<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:29:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740184" ref_strand="+" ref_description="SGN-E740184 [LC20BF11]">
      <seq>catatataaagttgctatttctgccgattctgaatttgttcttcagtttgcatgtttggattgtttaagtaaaggcttcgcttgaagttgatcttgtgtgaagggagattttcctgtttttgttttgttgtgaattgatttgtactggaagtgtttggaggatgagagatctgcgttgagtgtatgtgtttacgaaatggctacttctgagaattgccggaacgctgccggcgccggaaaagttgatgctgagaaagcgttgtacacggagctatggcgagcatgtgcaggtccgcttgtgacagtgccatgtgaaggcgagctggtgttctatttcccacaaggtcatattgaacaggttgaagcatcaacaaaccaagcttcagaccagcagatgccagtatataatcttccttctaagatcctctgtcgtgtgattaacgtcctgctgaaggctgaacccgatacagatgaggtgtatgcacaagtgactttgttgccagaaccaaatcaagatgagaatgtggtatcaaaggaaccgatgccctctccgccaccacgattccatgtgcactctttttgtaagacattaacagcctctgataccagcactcatggaggattttctgtcttgagacggcatgctgatgaatgcctcccgcctctggatatgtctcggcagcctccaacacaggagttggtggccaaagatttgcatgcaaatgagtggcgcttcaggcacatattccggggcccgcctaggaggcaccttcttcagagtggttggagtgtctttgttagttcgaaaaggcttgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4429" stop="7221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4729" g_stop="4970" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4971" i_stop="5119" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5120" g_stop="5235" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="358" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5236" i_stop="5403" i_length="168">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5404" g_stop="5499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="454" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5500" i_stop="5628" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5629" g_stop="5685" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="511" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5686" i_stop="5810" i_length="125">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5811" g_stop="5966" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="667" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="752" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6854" g_stop="6921" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="820" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E740184" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4729" e_stop="4970"/>
          <exon e_start="5120" e_stop="5235"/>
          <exon e_start="5404" e_stop="5499"/>
          <exon e_start="5629" e_stop="5685"/>
          <exon e_start="5811" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATAAAGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATTTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAGGTAATTTTTCTGTTATTAAAAGGGTTTACCATATGCAGCTGCTTTCCTGTTGTGTTTGTGCCTCAAATTGGACATCAAATTCTACTTTTGCTAATGAAAATTTCTGTAATTTGCTCTATAATTTTGAATTCTACGTGTTGTTTATGAAGTTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAGGTTTGCGTCTATATGTGCTTTCCAAACTGAGATATGTGCTTAATTTCATAGTTTTACCAATGAATCAACTAGGCTTTATTTGGACTAGTTTGGATTTTTTTTTATTCATTTTGGTCCATTCATCAGTCATGCCTATTTTTAGTTGACGTGTTTGAGTTTTTATGCTAGGTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAGGTGTCAGTTTTGTTGAATACAAAGTCTTGTTGTTTGGCCTAGCTTCCCTTTAGGATTTCCTGATGAATGATAGCCTATCAAGGATTCTGTAATCTTGGTGATTATGTTTTGACTTGTGTGTGTTCACAGGCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAATGTAAGTTTACAATGTGCCAGCCAAGAATTACTTCTTAGTTCTTTTTGAAGTTCCTATGTCGTTTTGAGACTTCAAATATTTCTGATCTTTGAGTTGGACATCTAATTAATGGAACATTCTTGTAGCAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCA</genome_strand>
        <mrna_strand>CATATATAAAGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATCTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAG.....................................................................................................................................................TTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAG........................................................................................................................................................................GTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAG.................................................................................................................................GCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAAT.............................................................................................................................CAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG......................................................................................GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738329" ref_strand="+" ref_description="SGN-E738329 [LC13BA12]">
      <seq>caatgttgctatttctgccgattctgaatttgttcttcagtttgcatgtttggattgtttaagtaaaggcttcgcttgaagttgatcttgtgtgaagggagattttcctgtttttgttttgttgtgaattgatttgtactggaagtgtttggaggatgagagatctgcgttgagtgtatgtgtttacgaaatggctacttctgagaattgccggaacgctgccggcgccggaaaagttgatgctgagaaagcgttgtacacggagctatggcgagcatgtgcaggtccgcttgtgacagtgccatgtgaaggcgagctggtgttctatttcccacaaggtcatattgaacaggttgaagcatcaacaaaccaagcttcagaccagcagatgccagtatataatcttccttctaagatcctctgtcgtgtgattaacgtcctgctgaaggctgaacccgatacagatgaggtgtatgcacaagtgactttgttgccagaaccaaatcaagatgagaatgtggtatcaaaggaaccgatgccctctccgccaccacgattccatgtgcactctttttgtaagacattaacagcctctgataccagcactcatggaggattttctgtcttgagacggcatgctgatgaatgcctcccgcctctggatatgtctcggcagcctccaacacaggagttggtggccaaagatttgcatgcaaatgagtggcgcttcaggcacatattccggggccagcctaggaggcaccttcttcaaagtggttggagtgtctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4436" stop="7200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4735" g_stop="4970" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4971" i_stop="5119" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5120" g_stop="5235" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="352" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5236" i_stop="5403" i_length="168">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5404" g_stop="5499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="448" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5500" i_stop="5628" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5629" g_stop="5685" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="505" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5686" i_stop="5810" i_length="125">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5811" g_stop="5966" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="661" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="746" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6854" g_stop="6900" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="793" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E738329" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4735" e_stop="4970"/>
          <exon e_start="5120" e_stop="5235"/>
          <exon e_start="5404" e_stop="5499"/>
          <exon e_start="5629" e_stop="5685"/>
          <exon e_start="5811" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATTTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAGGTAATTTTTCTGTTATTAAAAGGGTTTACCATATGCAGCTGCTTTCCTGTTGTGTTTGTGCCTCAAATTGGACATCAAATTCTACTTTTGCTAATGAAAATTTCTGTAATTTGCTCTATAATTTTGAATTCTACGTGTTGTTTATGAAGTTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAGGTTTGCGTCTATATGTGCTTTCCAAACTGAGATATGTGCTTAATTTCATAGTTTTACCAATGAATCAACTAGGCTTTATTTGGACTAGTTTGGATTTTTTTTTATTCATTTTGGTCCATTCATCAGTCATGCCTATTTTTAGTTGACGTGTTTGAGTTTTTATGCTAGGTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAGGTGTCAGTTTTGTTGAATACAAAGTCTTGTTGTTTGGCCTAGCTTCCCTTTAGGATTTCCTGATGAATGATAGCCTATCAAGGATTCTGTAATCTTGGTGATTATGTTTTGACTTGTGTGTGTTCACAGGCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAATGTAAGTTTACAATGTGCCAGCCAAGAATTACTTCTTAGTTCTTTTTGAAGTTCCTATGTCGTTTTGAGACTTCAAATATTTCTGATCTTTGAGTTGGACATCTAATTAATGGAACATTCTTGTAGCAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTT</genome_strand>
        <mrna_strand>CAATGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATCTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAG.....................................................................................................................................................TTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAG........................................................................................................................................................................GTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAG.................................................................................................................................GCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAAT.............................................................................................................................CAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG......................................................................................GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTAGGAGGCACCTTCTTCAAAGTGGTTGGAGTGTCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571384" ref_strand="+" ref_description="SGN-E571384 [13079]">
      <seq>ctaagattctatgccgtgtggtgaatgtcctgttaaaggctgaaccagatactgatgaggtgtatgcacaggtgactttgatgccggagccaaatcaagatgagaatacagtgaagaaggaacctatgcgccctcctccaccacgatttcatgtacactctttttgtaagactctaacagcctctgatacaagcactcacggtggattttccgtcttgagacgacatgctgatgaatgcctcccccaactggatatgtctcggcagcctcccacacaggagttggtggccaaagatttacatggaaatgagtggcgattcaggcatatattccggggccaacctaggaggcatcttcttcagagtggttggagtgtctttgttagttcgaagaggcttgttgctggggatgcattcatatttcttagaggtgagcaatggggagcttcgtgtaggagttagacgtgccatgagacagcaaggaaatgctccatcatcggtgatatccagtcatagcatgcatcttggtgtactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5320" stop="7438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5462" g_stop="5499" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5500" i_stop="5628" i_length="129">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5629" g_stop="5685" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="95" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5686" i_stop="5810" i_length="125">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5811" g_stop="5966" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="251" r_length="156" r_score="0.853"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="336" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6854" g_stop="6944" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7033" g_stop="7140" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="536" r_length="109" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E571384" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5462" e_stop="5499"/>
          <exon e_start="5629" e_stop="5685"/>
          <exon e_start="5811" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6944"/>
          <exon e_start="7033" e_stop="7140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAGGTGTCAGTTTTGTTGAATACAAAGTCTTGTTGTTTGGCCTAGCTTCCCTTTAGGATTTCCTGATGAATGATAGCCTATCAAGGATTCTGTAATCTTGGTGATTATGTTTTGACTTGTGTGTGTTCACAGGCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAATGTAAGTTTACAATGTGCCAGCCAAGAATTACTTCTTAGTTCTTTTTGAAGTTCCTATGTCGTTTTGAGACTTCAAATATTTCTGATCTTTGAGTTGGACATCTAATTAATGGAACATTCTTGTAGCAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGGTTAGCACTGACATACCGTCTCTTTTTTCCATTCTCCTGAGTTCATTAAATTCTAAAATGTTGGGTCACTCTATTGCTCTATTGTTAGAGGTGAG-AATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGC</genome_strand>
        <mrna_strand>CTAAGATTCTATGCCGTGTGGTGAATGTCCTGTTAAAG.................................................................................................................................GCTGAACCAGATACTGATGAGGTGTATGCACAGGTGACTTTGATGCCGGAGCCAAAT.............................................................................................................................CAAGATGAGAATACAGTGAAGAAGGAACCTATGCGCCCTCCTCCACCACGATTTCATGTACACTCTTTTTGTAAGACTCTAACAGCCTCTGATACAAGCACTCACGGTGGATTTTCCGTCTTGAGACGACATGCTGATGAATGCCTCCCCCAACTG......................................................................................GATATGTCTCGGCAGCCTCCCACACAGGAGTTGGTGGCCAAAGATTTACATGGAAATGAGTGGCGATTCAGGCATATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCTAGGAGGCATCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAGAGGCTTGTTGCTGGGGATGCATTCATATTTCTTAG........................................................................................AGGTGAGCAATGGGGAGCTTCGTGTAGGAGTTAGACGTGCCATGAGACAGCAAGGAAATGCTCCATCATCGGTGATATCCAGTCATAGCATGCATCTTGGTGTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737095" ref_strand="+" ref_description="SGN-E737095 [LC08BH06]">
      <seq>tctttttgtaagacattaacagcctctgataccagcactcatggaggattttctgtcttgagacggcatgctgatgaatgcctcccgcctctggatatgtctcggcagcctccaacacaggagttggtggccaaagatttgcatgcaaatgagtggcgcttcaggcacatattccggggccagcctaggaggcaccttcttcagagtggttggagtgtctttgttagttcgaaaaggcttgttgcaggggatgcattcatatttcttagaggtgagaatggggagcttcgtgttggagtccgacgtgccatgagacagcagggtaatgctccatcatcagtgatatccagtcatagcatgcatcttggtgtccttgctacagcttggcatgctattcagacgaaaacactgttcacagtatattataaaccaaggacgagccctgctgactttatagttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcattgaaaatgctgacctcaaaaggtggcctgagtcaaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttccaataccaaggcagaaaaggccgcgatcaaatgtcctgccctcgtctcctgattcttctgtacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5574" stop="8295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5874" g_stop="5966" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="178" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6854" g_stop="6944" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="269" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7033" g_stop="7197" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="434" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7340" g_stop="7459" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="554" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="630" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7831" g_stop="7995" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="795" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E737095" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5874" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6944"/>
          <exon e_start="7033" e_stop="7197"/>
          <exon e_start="7340" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="7995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGGTTAGCACTGACATACCGTCTCTTTTTTCCATTCTCCTGAGTTCATTAAATTCTAAAATGTTGGGTCACTCTATTGCTCTATTGTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACT</genome_strand>
        <mrna_strand>TCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG......................................................................................GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAG........................................................................................AGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG..............................................................................................................................................GACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTCCTGCCCTCGTCTCCTGATTCTTCTGTACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738861" ref_strand="+" ref_description="SGN-E738861 [LC15AH10]">
      <seq>tctttttgtaagacattaacagcctctgataccagcactcatggaggattttctgtcttgagacggcatgctgatgaatgcctcccgcctctggatatgtctcggcagcctccaacacaggagttggtggccaaagatttgcatgcaaatgagtggcgcttcaggcacatattccggggccagcctaggaggcaccttcttcagagtggttggagtgtctttgttagttcgaaaaggcttgttgcaggggatgcattcatatttcttagaggtgagaatggggagcttcgtgttggagtccgacgtgccatgagacagcagggtaatgctccatcatcagtgatatccagtcatagcatgcatcttggtgtccttgctacagcttggcatgctattcagacgaaaacactgttcacagtatattataaaccaaggacgagccctgctgactttatagttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcattgaaaatgctgacctcaaaaggtggcctgagtcaaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttccaataccaaggcagaaaaggccgcgatcaaatgtcctgccctcgtctcctgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5574" stop="8284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5874" g_stop="5966" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="178" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6854" g_stop="6944" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="269" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7033" g_stop="7197" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="434" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7340" g_stop="7459" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="554" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="630" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7831" g_stop="7984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="784" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E738861" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5874" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6944"/>
          <exon e_start="7033" e_stop="7197"/>
          <exon e_start="7340" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="7984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGGTTAGCACTGACATACCGTCTCTTTTTTCCATTCTCCTGAGTTCATTAAATTCTAAAATGTTGGGTCACTCTATTGCTCTATTGTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTT</genome_strand>
        <mrna_strand>TCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG......................................................................................GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAG........................................................................................AGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG..............................................................................................................................................GACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTCCTGCCCTCGTCTCCTGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339703" ref_strand="+" ref_description="SGN-E339703 [cTOE-16-C12]">
      <seq>ttgagacgacatgctgatgaatgcctcccccaactggacatgtctcggcagcctcccacacaggagttggtggccaaagatttacatggaaatgagtggcgattcaggcatatattccggggccagcctaggaggcatcttcttcagagtggttggagtgtctttgttagttcgaagaggcttgttgctggggatgcattcatatttcttagaggtgagaatggggagcttcgtgttggtgttagacgtgccatgagacagcaaggaaatgctccatcatcggtgatatccagtcatagcatgcatcttggtgtacttgcaacagcttggcatgccattcaaacaaaaacgatgttcactgtgtattacaagcccaggacaagccctgctgagtttatagttccatatgaccactatatggaatctgtgaagaataattactctattggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5631" stop="7715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5931" g_stop="5966" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6053" g_stop="6137" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="121" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6854" g_stop="6944" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="212" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7033" g_stop="7197" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="377" r_length="165" r_score="0.891"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="0.80"/>
            <acceptor a_prob="0.846" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7340" g_stop="7415" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="453" r_length="76" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E339703" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5931" e_stop="5966"/>
          <exon e_start="6053" e_stop="6137"/>
          <exon e_start="6854" e_stop="6944"/>
          <exon e_start="7033" e_stop="7197"/>
          <exon e_start="7340" e_stop="7415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTGGTTAGAAAGAATTCTTTCTCAATACAGTTATGGTGCCTGTATTTTGATAATGTAAGTAACTCATGGTGGTTAATTTTTTGTAATAGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGGTTAGCACTGACATACCGTCTCTTTTTTCCATTCTCCTGAGTTCATTAAATTCTAAAATGTTGGGTCACTCTATTGCTCTATTGTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATG</genome_strand>
        <mrna_strand>TTGAGACGACATGCTGATGAATGCCTCCCCCAACTG......................................................................................GACATGTCTCGGCAGCCTCCCACACAGGAGTTGGTGGCCAAAGATTTACATGGAAATGAGTGGCGATTCAGGCATATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTAGGAGGCATCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAGAGGCTTGTTGCTGGGGATGCATTCATATTTCTTAG........................................................................................AGGTGAGAATGGGGAGCTTCGTGTTGGTGTTAGACGTGCCATGAGACAGCAAGGAAATGCTCCATCATCGGTGATATCCAGTCATAGCATGCATCTTGGTGTACTTGCAACAGCTTGGCATGCCATTCAAACAAAAACGATGTTCACTGTGTATTACAAGCCCAG..............................................................................................................................................GACAAGCCCTGCTGAGTTTATAGTTCCATATGACCACTATATGGAATCTGTGAAGAATAATTACTCTATTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281154" ref_strand="+" ref_description="SGN-E281154 [cLER-7-N5]">
      <seq>cctcccacacaggagttggtggccaaagatttacatggaaatgagtggcgattcaggcatatattccggggccagcctaggaggcatcttcttcagagtggttggagtgtctttgttagttcgaagaggcttgttgctggggatgcattcatatttcttagaggtgagaatggggagcttcgtgttggtgttagacgtgccatgagacagcaaggaaatgctccatcatcggtgatatccagtcatagcatgcatcttggtgtacttgcaacagcttggcatgccattcaaacaaaaacgatgttcactgtgtattacaagcccaggacaagccctgctgagtttatagttccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5768" stop="7671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6068" g_stop="6137" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6854" g_stop="6944" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="161" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7033" g_stop="7197" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="326" r_length="165" r_score="0.891"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="0.80"/>
            <acceptor a_prob="0.846" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7340" g_stop="7371" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="358" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E281154" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6068" e_stop="6137"/>
          <exon e_start="6854" e_stop="6944"/>
          <exon e_start="7033" e_stop="7197"/>
          <exon e_start="7340" e_stop="7371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGTATGATGCTTAATGCATTCTTAATCACTCTGTGTCGTTAAATTTTGTGACATGTACCACCTCCCATTCCTTTTGGGTCAATCCTTGCAGACGTAAAAGATGCACTATCACAATGTTGCTTTTTCATAGATCATAGGCTTATTTAATTTGTATGATTATATCTTCATTGAAATTTATTTGTCTATGTATCACCCCAGTTACAATGTTAGAATATAGTGAGTGTAAGGCAATGCATTGTGACTTCAGATACCTTTGTAAAATTATTAGCTGATAGTTTGGCATAAATTTGGAGAGATAGGGAGGGAATCCCTTGTGTTTTAGCGATAAACCAAATGCATGTCATATTGTTTAAGTGGTTTATATAGTTAACTCAGGGAAGAAAAACTATTTTATGATCTCTCAATAATGAGATAGAATCAGTGTGAGGAGCAAAAACATTGGATTTCTTGCTGGAGGAGAAGGATGAGACATGAGTCAAGAAAAATTGCTACTGTGATTCAGAGACTAATCAAAAAAATATTTTTGCTTGTGTGGTCAAGGGTGTACTTTTGAACCTTTTGTCCCCTTCTTATTTCTTCTTTTTGGTTGTATGGGGAATTTGTTTTGAGAGTGTTGAGACTTGGAGCACTATTGCTTGATGTAAGGTGTGGCATTACAATGCATTGGTTGGTTGTTCTTGCTATGTTTATTGAGTTTTATTCTCATGCTACCATCAGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGGTTAGCACTGACATACCGTCTCTTTTTTCCATTCTCCTGAGTTCATTAAATTCTAAAATGTTGGGTCACTCTATTGCTCTATTGTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATG</genome_strand>
        <mrna_strand>CCTCCCACACAGGAGTTGGTGGCCAAAGATTTACATGGAAATGAGTGGCGATTCAGGCATATATTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTAGGAGGCATCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAGAGGCTTGTTGCTGGGGATGCATTCATATTTCTTAG........................................................................................AGGTGAGAATGGGGAGCTTCGTGTTGGTGTTAGACGTGCCATGAGACAGCAAGGAAATGCTCCATCATCGGTGATATCCAGTCATAGCATGCATCTTGGTGTACTTGCAACAGCTTGGCATGCCATTCAAACAAAAACGATGTTCACTGTGTATTACAAGCCCAG..............................................................................................................................................GACAAGCCCTGCTGAGTTTATAGTTCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364757" ref_strand="+" ref_description="SGN-E364757 [cLPT-4-D11]">
      <seq>aatgctccatcatcagtgatatccagtcatagcatgcatcttggtgtccttgctacagcttggcatgctattcagacgaaaacactgttcacagtatattataaaccaaggacgagccctgctgagtttatagttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcatcgaaaatgctgacctcaaaaggtggcctgagtcgaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttcctataccaaggcagaaaaggcctcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttcatccaaagtagctgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6788" stop="8516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7088" g_stop="7197" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7340" g_stop="7459" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="230" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="306" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7831" g_stop="8002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="478" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8103" g_stop="8216" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="592" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E364757" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7088" e_stop="7197"/>
          <exon e_start="7340" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8002"/>
          <exon e_start="8103" e_stop="8216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACT</genome_strand>
        <mrna_strand>AATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG..............................................................................................................................................GACGAGCCCTGCTGAGTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATCGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCGAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCTATACCAAGGCAGAAAAGGCCTCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG....................................................................................................GTTCATCCAAAGTAGCTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736110" ref_strand="+" ref_description="SGN-E736110 [LC04BF01]">
      <seq>catgcatcttggtgtccttgctacagcttggcatgctattcagacgaaaacactgttcacagtatattataaaccaaggacgagccctgctgactttatagttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcattgaaaatgctgacctcaaaaggtggcctgagtcaaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttccaataccaaggcagaaaaggccgcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttcatccaaagtagttgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtcaaggaaatgtatatcagataaacggcttcctttagggaggcctgaatcatcttttacagatcttttatcaggttttggggggcaatctagttcatctcatggattccattcacccactgggggccaaacagcacctgctagctgggttaagcgacaagctctggataaggaaactgatttcagcttactggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6820" stop="8778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7120" g_stop="7197" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7340" g_stop="7459" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="198" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="274" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7831" g_stop="8002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="446" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8103" g_stop="8478" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="822" r_length="376" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E736110" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7120" e_stop="7197"/>
          <exon e_start="7340" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8002"/>
          <exon e_start="8103" e_stop="8478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAGGCAAGTGATTCAAATGACCAGGGAAAAATAGTTTAAGCTTGTTCCATAAATTGAGATCTATATCATGAAAGGATTTGGCTTTGTTACCTACTTGTTGCTCTGGGATTTTCCTTCCTCACTGCTTCAGTTTTATGTATCATAGGACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAA</genome_strand>
        <mrna_strand>CATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG..............................................................................................................................................GACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG....................................................................................................GTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367307" ref_strand="+" ref_description="SGN-E367307 [cLPT-5-J8]">
      <seq>ttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaatctccagaacagaggtttactggaactatagttggcatcgaaaatgctgacctcaaaaggtggcctgagtcgaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctgtaaagtagagccagctcttagccctcctgcacttaatccacttcctataccaaggcagaaaaggcctcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttcatccaaagtagctgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtcaaggaaatgtatatcagataaacggcttcctttagggaggcctgaatcatcttttacagatcttttatcaggttttggggggcaatcaagttcatctcatgggttccattcacccactgggggccaaacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7063" stop="8716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7363" g_stop="7459" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="173" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7831" g_stop="8002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="345" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8103" g_stop="8416" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="659" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E367307" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7363" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8002"/>
          <exon e_start="8103" e_stop="8416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCA</genome_strand>
        <mrna_strand>TTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAATCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATCGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCGAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGTAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCTATACCAAGGCAGAAAAGGCCTCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG....................................................................................................GTTCATCCAAAGTAGCTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCAAGTTCATCTCATGGGTTCCATTCACCCACTGGGGGCCAAACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367136" ref_strand="+" ref_description="SGN-E367136 [cLPT-5-J9]">
      <seq>ttccatatgatcagtatatttagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcatcgaaaatgctgacctcaaaaggtggcctgagtcgaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttcctataccaaggcagaaaaggcctcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttcatccaaagtagctgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtcaaggaaatgtatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7063" stop="8598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7363" g_stop="7459" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="173" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7831" g_stop="8002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="345" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8103" g_stop="8298" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="541" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E367136" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7363" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8002"/>
          <exon e_start="8103" e_stop="8298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATC</genome_strand>
        <mrna_strand>TTCCATATGATCAGTATATTTAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATCGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCGAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCTATACCAAGGCAGAAAAGGCCTCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG....................................................................................................GTTCATCCAAAGTAGCTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367246" ref_strand="+" ref_description="SGN-E367246 [cLPT-5-I14]">
      <seq>ttccatatgatcagtatatggagtctctgaaaaacaattactccatcgggatgaggtttaaaatgaggtttgaaggtgaagaagctccagaacagaggtttactggaactatagttggcatcgaaaatgctgacctcaaaaggtggcctgagtcgaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttcctataccaaggcagaaaaggcctcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttcatccaaagtagctgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7063" stop="8584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7363" g_stop="7459" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="173" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7831" g_stop="8002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="345" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8103" g_stop="8284" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="527" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E367246" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7363" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8002"/>
          <exon e_start="8103" e_stop="8284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCA</genome_strand>
        <mrna_strand>TTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATAGTTGGCATCGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCGAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCTATACCAAGGCAGAAAAGGCCTCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG....................................................................................................GTTCATCCAAAGTAGCTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740836" ref_strand="+" ref_description="SGN-E740836 [LC23AD09]">
      <seq>cgctttagagaacaataactgctggggggggtcctgcatctcatctgtctatggattcggtgaataaacattactccatccggatgaggtttaaaatgaggcttgcaggtgatgaacctccagaacagaggtttactggaactatcgttggcattgaaaatgctgacctcaaaaggtggcctgagtcaaaatggagatgcctgaaggttcgatgggatgaaacttctgctattcctaggccagaccgagtttcaccctggaaagtagagccagctcttagccctcctgcacttaatccacttccaataccaaggcagaaaaggccgcgatcaaatgttctgccctcgtctcctgattcttctgtacttactagggaaggttataacttgcccttatatttgaattccataccctgaactgcgtttatatctacatttcaagctgagtgtttcttttgtacttttggcactttcttaaggttcatccaaagtagttgtagacacttcacaagccagtgggttttcaagagttttgcatggtcaagaaatatcgaccttgagaggcaattttgtataaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtcaaggaaatgtatatcagataaacggcttcctttagggaggcctgaatcatcttttacaaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7064" stop="8648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7377" g_stop="7459" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200">
            <donor d_prob="0.798" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7660" g_stop="7735" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="206" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7831" g_stop="8348" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="724" r_length="518" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E740836" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7377" e_stop="7459"/>
          <exon e_start="7660" e_stop="7735"/>
          <exon e_start="7831" e_stop="8348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTACATTAGCAGCACTAGAGGGATCGTTTTCCTTCTTTAGTAATACATGTGATTCGATGTGGTTTAGACTTTGATATGATATCAAGCATATCTGTATTATGGGCTTCAAATCAAATTCATACTATTTAGTGATATTTCGCATTAAATAAATTTCTTCTCTCAGAACCCCTGATTTTGTTGTTCACTCCAAAATCTTATAGGTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAGGTAGAATCCACGTTCACTTTTTTTTTTTTTTCTGGTTGGTTATCTTTCTCCCATATTTAATACTGAAATATCATTCTTTCTCCCCTGATTTTAAGGTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTT</genome_strand>
        <mrna_strand>TCTATGGATTCGGTGAATAAACATTACTCCATCCGGATGAGGTTTAAAATGAGGCTTGCAGGTGATGAACCTCCAGAACAGAG........................................................................................................................................................................................................GTTTACTGGAACTATCGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG...............................................................................................GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCATGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTATAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366611" ref_strand="+" ref_description="SGN-E366611 [cLPT-13-N14]">
      <seq>tttcttatggttcatccaaagtagctgtagacacttcacaagccagtgggttttcaagagttttgcaaggtcaagaaatatcgaccttgagaggcaattttgtagaaaataacgagtcggactcttctgagaagccacctatatggcaaccattactggatgacgagaaggctgatgttcattctgcgtcaaggaaatgtatatcagataaacggcttcctttagggaggcctgaatcatcttttacagatcttttatcaggttttggggggcaatcaagttcatctcatgggatccattcacccactgggggccaaacagcacctgctagctgggttaagcgacaagctctggataaggaaactgatttcagcttactgggaaaacaatggactctagtgtcttctggtctctcacttaatctgatggaatcaggattgaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7794" stop="8839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8094" g_stop="8539" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E366611" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8094" e_stop="8539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGT</genome_strand>
        <mrna_strand>TTTCTTATGGTTCATCCAAAGTAGCTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCGACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCAAGTTCATCTCATGGGATCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGGAAAACAATGGACTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570400" ref_strand="+" ref_description="SGN-E570400 [14978]">
      <seq>cctgaatcatcttttacagatcttttatccgggttttggggggcaatcgagttcctctcatgggttccattcacccactaggggccaaacagcacctgctagctgggttaaacgacaagcactggataaggaaactgatttcagcttactgggaaaacaatggtcactagtgtcttctggtctctcacttaatctgatggattcaggattgaagggtgcagatactctttatcaaatgcggggaacatctagactcaatggttttaacgagtatccaaccctccctgggtcatagaactgacaatcagcagggaaattggttaatgcccccggtccgtgttgccttggtattcagatgtccactcgttctggagaaattatgcctaaacccatgacttcaccacagcccgaagccatgaaagccaaagaagggaactgcaaactatttggcattccccttgtaagtaaatgtgctaccatagatcctgtcatgttgcggaaaaattctctgattgactcaacaagtaacatgcattttggtatacacccacatcaatttccctataactgaatctgatccaaaggtctgagcaatcaaaggggatcaaaggtaccagaatgaccggggatcacagttcatgatcaggaaagaacaattccaaactctcatcctggtactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8024" stop="9294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8324" g_stop="8994" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E570400" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8324" e_stop="8994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAATCATCTTTTACAGATCTTTTAT-CAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGTGCAGATACTCTGTATCAAATGCGGGGAACATCTCGACTCAATTGTTTTAACGAGTATCCAACCTTCCCT-GGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCC-GTCCGTGCTGCCTTA-TATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAA-TTCCCTATAATTGAATCTGAT-CAAAGGTCTGAGCAATCAAAGG-GATCAAAGCTACCAG-ATGA--TGGCTTCATAGTTCATGATCAGG-AAGAACAATTCCAAACCTCTCATCCTGGTACTCG</genome_strand>
        <mrna_strand>CCTGAATCATCTTTTACAGATCTTTTATCCGGGTTTTGGGGGGCAATCGAGTTCCTCTCATGGGTTCCATTCACCCACTAGGGGCCAAACAGCACCTGCTAGCTGGGTTAAACGACAAGCACTGGATAAGGAAACTGATTTCAGCTTACTGGGAAAACAATGGTCACTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGATTCAGGATTGAAGGGTGCAGATACTCTTTATCAAATGCGGGGAACATCTAGACTCAATGGTTTTAACGAGTATCCAACCCTCCCTGGGTCATAGAACTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGGTCCGTGTTGCCTTGGTATTCAGATGTCCACTCGTTCTGGAGAAATTATGCCTAAACCCATGACTTCACCACAGCCCGAAGCCATGAAAGCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCTACCATAGATCCTGTCATGTTGCGGAAAAATTCTCTGATTGACTCAACAAGTAACATGCATTTTGGTATACACCCACATCAATTTCCCTATAACTGAATCTGATCCAAAGGTCTGAGCAATCAAAGGGGATCAAAGGTACCAGAATGACCGGGGATCACAGTTCATGATCAGGAAAGAACAATTCCAAA-CTCTCATCCTGGTACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346488" ref_strand="+" ref_description="SGN-E346488 [cTOF-23-F14]">
      <seq>aaaacaatggtctctagtgtcttctggtctctcacttaatctgatggaatcaggattgaagggtgcagatactctgtatcaaatgcggggaacatctcgactcaattgttttaacgagtatccaaccttccctggtcatagacctgacaatcagcagggaaattggttaatgcccccgtccgtgctgccttatattcagatgtccgctcattctggagaaattatgcctaaacccatggcttcaccacagcccgaagccatgaaacccaaagaagggaactgcaaactatttggcattccccttgtaagtaaatgtgccaccatagatcctgtcatgttgcggaaaaattccccgattcactcaacaagtaacatgcactttggtatacatccacatcaattccctataattgaatctgatcaaaggtctgagcaatcaaagggatcaaagctaccagatgatggcttcatagttcatgatcaggaagaacaattccaaacctctcatcctggtactcgagatagagagggcaaaggccttgttcattcaacaaggagttgcaccaaggttcataaacagggtacagcccttggaaggtctgntgatcttgcaaagttcaacaactatgaagaattgatagctgaactggatcacatttttgattttaatggtgagctcaaggctcgtaacacgaactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8176" stop="9556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8476" g_stop="9043" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9124" g_stop="9256" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="701" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E346488" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8476" e_stop="9043"/>
          <exon e_start="9124" e_stop="9256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGTGCAGATACTCTGTATCAAATGCGGGGAACATCTCGACTCAATTGTTTTAACGAGTATCCAACCTTCCCTGGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGTCCGTGCTGCCTTATATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAGGTTTGCACCTAGGCTTTTGGCTTAACTTTTGCTTATGACATTTTAAGAAACTTCAATAATTTGGGTTATTTTGATTTAAGGTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGC</genome_strand>
        <mrna_strand>AAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGTGCAGATACTCTGTATCAAATGCGGGGAACATCTCGACTCAATTGTTTTAACGAGTATCCAACCTTCCCTGGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGTCCGTGCTGCCTTATATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAG................................................................................GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGNTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACACGAACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475394" ref_strand="+" ref_description="SGN-E475394 [cSTB-38-L8]">
      <seq>ccctggccatagaactgacaatcagcagggaaattggttaatgtccccgtccgtgttgccttatattcagatgtccactcgttctggagaaattatgcctaaacccatggcttcaccacagcccgaagccatgaaacccaaagaagggaactgcaaactatttggcattccccttgtaagtaaatgtgctaccatagatcctgtcatgttgcggaaaaattctccgattgactcaacaagtaacatgcattttggtatacacccacatcaattccctataactgaatctgatcaaaggtctgagcaatcaaagggatcaaagctaccagatgacgggatcacaggtcatgatcaggaagaacaattccaaacctctcatcctggtactcgagatagagagggcaaagtccttgttaattcaacaaggagttgcaccaaggttcataaacagggtacagcccttggaaggtctgtggatcttgcaaagttcaacaactatgaagaattgatagctgaactggatcacatttttgattttaatggtgagctcaaggctcggaacaagaactggctggttgtatatactgatgatgagggtgacatgatgcttgttggagatgatccatggcaagaattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8305" stop="9620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8605" g_stop="9043" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9124" g_stop="9314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="630" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9315" i_stop="9442" i_length="128">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9443" g_stop="9452" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="640" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E475394" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8605" e_stop="9043"/>
          <exon e_start="9124" e_stop="9314"/>
          <exon e_start="9443" e_stop="9452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGTCCGTGCTGCCTTATATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAGGTTTGCACCTAGGCTTTTGGCTTAACTTTTGCTTATGACATTTTAAGAAACTTCAATAATTTGGGTTATTTTGATTTAAGGTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGTAGTAAGTGGTCTCCTATTCTTTGTGATGCATAAAGGATGGAAGATGGTTATCTTTTTGGTGCTTCCTAAGTTCTGCAGTTATCTGAATTCTTATACTCTGCTTTGTCACCTGTTGTCTTTGTGAAACAGGGAATTTTGT</genome_strand>
        <mrna_strand>CCCTGGCCATAGAACTGACAATCAGCAGGGAAATTGGTTAATGTCCCCGTCCGTGTTGCCTTATATTCAGATGTCCACTCGTTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCTACCATAGATCCTGTCATGTTGCGGAAAAATTCTCCGATTGACTCAACAAGTAACATGCATTTTGGTATACACCCACATCAATTCCCTATAACTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGACGGGATCACAGGTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGTCCTTGTTAATTCAACAAGGAGTTGCACCAAG................................................................................GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTGGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGGAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGCA................................................................................................................................AGAATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304971" ref_strand="+" ref_description="SGN-E304971 [cLEX-10-F14]">
      <seq>acagcccgaagccatgaaacccaaagaagggaactgcaaactatttggcattccccttgtaagtaaatgtgccaccatagatcctgtcatgttgcggaaaaattccccgattcactcaacaagtaacatgcactttggtatacatccacatcaattccctataattgaatctgatcaaaggtctgagcaatcaaagggatcaaagctaccagatgatggcttcatagttcatgatcaggaagaacaattccaaacctctcatcctggtactcgagatagagagggcaaaggccttgttcattcaacaaggagttgcaccaaggttcataaacagggtacagcccttggaaggtctgttgatcttgcaaagttcaacaactatgaagaattgatagctgaactggatcacatttttgattttaatggtgagctcaaggctcgtaacaagaactggctggttgtatatactgatgatgagggtgacatgatgcttgttggagatgatccatggcaggaattttgtggtatggttcggaagatttttatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8422" stop="9780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8722" g_stop="9043" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9124" g_stop="9314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="513" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9315" i_stop="9442" i_length="128">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9443" g_stop="9480" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="551" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E304971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8722" e_stop="9043"/>
          <exon e_start="9124" e_stop="9314"/>
          <exon e_start="9443" e_stop="9480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAGGTTTGCACCTAGGCTTTTGGCTTAACTTTTGCTTATGACATTTTAAGAAACTTCAATAATTTGGGTTATTTTGATTTAAGGTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGTAGTAAGTGGTCTCCTATTCTTTGTGATGCATAAAGGATGGAAGATGGTTATCTTTTTGGTGCTTCCTAAGTTCTGCAGTTATCTGAATTCTTATACTCTGCTTTGTCACCTGTTGTCTTTGTGAAACAGGGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACA</genome_strand>
        <mrna_strand>ACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAG................................................................................GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGCA................................................................................................................................GGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301314" ref_strand="+" ref_description="SGN-E301314 [cLEW-24-C13]">
      <seq>atagatcctgtcatgttgccgaaaaatttcccgattcactcaacaagtcacatgcacttcggtatacatccacatcaattccctataattgaatctgatcaaaggtctgagcaatcaaagggatcaaagctaccagatgatggcttcatagttcatgatcaggaagaacaattccaaacctctcatcctggtactctagataaagagggcaaaggccttgttcattcaacaaggagttgcaccaaggttcataaacagggtacagcccttggaaggtctgttgatcttgcaaagttcaacaactatgaagaattgatagctgaactggatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8498" stop="9511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8798" g_stop="9043" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9124" g_stop="9211" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="334" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E301314" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8798" e_stop="9043"/>
          <exon e_start="9124" e_stop="9211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAGGTTTGCACCTAGGCTTTTGGCTTAACTTTTGCTTATGACATTTTAAGAAACTTCAATAATTTGGGTTATTTTGATTTAAGGTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACA</genome_strand>
        <mrna_strand>ATAGATCCTGTCATGTTGCCGAAAAATTTCCCGATTCACTCAACAAGTCACATGCACTTCGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCTAGATAAAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAG................................................................................GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734185" ref_strand="+" ref_description="SGN-E734185 [LB12AA08]">
      <seq>aggaattttgtggtatggttcggaagatttttatctacacgaaagatgaggtgcagcggatgaaccctgggactctcaattcaaaaggcgaggacaattcttctgttgcagaaggctctgatgctaaagaagtgaagaatctacagcttcacattgattccagtccggaagattcttagataatagagaagtcctccttaattgaggtttattaaaatctgtggaaaatactatatccacccagctgttggcatttttagggattctggaaggtggttacccacatcaaagtcccttttagcttccggatggctggtctccccattgatgcagcttctgtaatttgcagtttcgaccctttttggcgccaaattatgatgacttatctatatacagaatacatgaattatcagcctggtcacagtcttgctttcgcttatttccttatgtacatacccagttttaacagttcttctggcagctctagatgtaaataagaaaatgatacaacagcataatttatgtacaacttgtagccaactgctttgagtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9143" stop="10549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9314" g_stop="9314" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9315" i_stop="9442" i_length="128">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9443" g_stop="9647" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="206" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9648" i_stop="9902" i_length="255">
            <donor d_prob="0.401" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9903" g_stop="10245" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="549" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="572"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E734185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9314" e_stop="9314"/>
          <exon e_start="9443" e_stop="9647"/>
          <exon e_start="9903" e_stop="10245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTGGTCTCCTATTCTTTGTGATGCATAAAGGATGGAAGATGGTTATCTTTTTGGTGCTTCCTAAGTTCTGCAGTTATCTGAATTCTTATACTCTGCTTTGTCACCTGTTGTCTTTGTGAAACAGGGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAGGTATTGAAAGTAAAATGCCAAAGAAAATATCTGTTGGCTCATTTTTAGCTGCTGTTTGTGTGACTATAAATCATCTCATTAGGGGTAAATGGGAAGTTTGAAGTTAAATTGTTACTACTAAATATAGAAAGGTGTCATTTTTTTGGGATTGACTAAAAAGGAATTTTTTTTACATCAATTGGGACAGGGATGTGGGGTGACAGTTGCCCTGCTGCAATATCCAGTTCGTTGACAACTTTTAATCTAATTTGACAGGTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGA</genome_strand>
        <mrna_strand>A................................................................................................................................GGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAG...............................................................................................................................................................................................................................................................GTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275695" ref_strand="+" ref_description="SGN-E275695 [cLEN-18-J17]">
      <seq>ttttatctacacgaaagatgaggtgcagcggatgaaccctgggactctcaattcaaaaggcgaggacaattcttctgttgcagaaggctctgatgctaaagaagtgaagaatctacagcttcacattgattccagtccggaagattcttagataatagagaagtcctccttaattgaggtttattaaaatctgtggaaaatactatatccacccagctgttggcatttttagggattctggaaggtggttacccacatcaaagtcccttttagcttccggatggctggtctccccattgatgcagcttctgtaatttgcagtttcgaccctttttggcgccaaattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9170" stop="10377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9470" g_stop="9647" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9648" i_stop="9902" i_length="255">
            <donor d_prob="0.401" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9903" g_stop="10077" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="353" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E275695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9470" e_stop="9647"/>
          <exon e_start="9903" e_stop="10077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAGGTATTGAAAGTAAAATGCCAAAGAAAATATCTGTTGGCTCATTTTTAGCTGCTGTTTGTGTGACTATAAATCATCTCATTAGGGGTAAATGGGAAGTTTGAAGTTAAATTGTTACTACTAAATATAGAAAGGTGTCATTTTTTTGGGATTGACTAAAAAGGAATTTTTTTTACATCAATTGGGACAGGGATGTGGGGTGACAGTTGCCCTGCTGCAATATCCAGTTCGTTGACAACTTTTAATCTAATTTGACAGGTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGA</genome_strand>
        <mrna_strand>TTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAG...............................................................................................................................................................................................................................................................GTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703367" ref_strand="+" ref_description="SGN-E703367 [FA21BC02]">
      <seq>gccaaattatgatgacttatctatatacagaatacatgaattatcagcctggtcacagtcttgctttcgcttatttccttatgtacatacccagttttaacagttcttctggcagctctagatgtaaataagaaaatgatacaacagcataatttatgtacaacttgtagccaactgctttgagtttcctccgtatatcaggctatcagcagttgtggtcatccgggtgaacatgtcatgcaaaatattggtcttattgatcaagttactgcttcgtcccttttgattaaccgtggttgacgctcacatagggccaagttccttctgcaaacatcgggctattatagtagacatagtcagtatttctgaactggagcaaattccccaaagcttggtgacaccatggtgtggcaatttggtgccgttttgttaccagagtactggaggcccagagcttggcctgacaacatagaattggttcagttgttgatcgacaaggttgcagaacaatgtggggtatttggaggaagtgggcgatttcattgaaacttcatattgcagacagcaagtagatgttgccgaatataggtattttaaagttatcttcatgtagcatatggttgatggatcttgtgccgtccacccatggaatgatgagtccaggctccctctactgttcttttagtatctgatgttgctggatttcttgtatataagaaaaggtgtcactgaattacttttggtaaatcattgcttctatgaaacaagcatcgtagtgcatggattttgtgtctagcaatccttgggactggatggtgctgctgaatatactatggtatcggggcttctttttgctgctgcttgtttaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9763" stop="11235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10063" g_stop="10935" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E703367" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10063" e_stop="10935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGAGTTTCCTCCGTATATCAGGCTATCAGCAGTTGTGGTCATCCGGGTGAACATGTCATGCAAAATATTGGTCTTATTGATCAAGTTACTGCTTCGTCCCTTTTGATTAACCGTGGTTGACGCTCACATAGGGCCAAGTTCCTTCTGCAAACATCGGGCTATTATAGTAGACATAGTCAGTATTTCTGAACTGGAGCAAATTCTCCAAAGCTTGGTGACACCATGGTGTGGCAATTTGGTGCCGTTTTGTTACCAGAGTACTGGAGGCCCAGAGCTTGGCCTGACAACATAGAATTGGTTCAGTTGTTGATCGACAAGGTTGCAGAACAATGTGGGGTATTTGGAGGAAGTGGGCGATTTCATTGAAACTTCATATTGCAGACAGCAAGTAGATGTTGCCAAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTA</genome_strand>
        <mrna_strand>GCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGAGTTTCCTCCGTATATCAGGCTATCAGCAGTTGTGGTCATCCGGGTGAACATGTCATGCAAAATATTGGTCTTATTGATCAAGTTACTGCTTCGTCCCTTTTGATTAACCGTGGTTGACGCTCACATAGGGCCAAGTTCCTTCTGCAAACATCGGGCTATTATAGTAGACATAGTCAGTATTTCTGAACTGGAGCAAATTCCCCAAAGCTTGGTGACACCATGGTGTGGCAATTTGGTGCCGTTTTGTTACCAGAGTACTGGAGGCCCAGAGCTTGGCCTGACAACATAGAATTGGTTCAGTTGTTGATCGACAAGGTTGCAGAACAATGTGGGGTATTTGGAGGAAGTGGGCGATTTCATTGAAACTTCATATTGCAGACAGCAAGTAGATGTTGCCGAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225840" ref_strand="+" ref_description="SGN-E225840 [cLEL-17-G18](-)">
      <seq>gtagatgttgccaaatataggtattttaaagttatcttcatgtagcatatggttgatggatcttgtgccgtccacccatggaatgatgagtccaggctccctctactgttcttttagtatctgatgttgctggatttcttgtatataagaaaaggtgtcactgaattacttttggtaaatcattgcttctatgaaacaagcatcgtagtgcatggattttgtgtctagcaatccttgggactggatggtgctgctgaatatactatggtatcggggcttctttttgctgctgcttgtttaacttatttaagcagtagccatatcattttaagctttactttgtttatctcgatcctccgcccctttctccctcattgtatgaacacattaatggagctcgactaaaattgatctcttatgatgaaaaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10331" stop="82132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10631" g_stop="11054" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11055" i_stop="11622" i_length="568">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11623" g_stop="11643" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="445" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11644" i_stop="11808" i_length="165">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.572" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11809" g_stop="11813" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="450" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E225840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10631" e_stop="11054"/>
          <exon e_start="11623" e_stop="11643"/>
          <exon e_start="11809" e_stop="11813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGTTGCCAAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTATTTAAGCAGTAGCCATATCATTTTAAGCTTTACTTTGTTTATCTCGATCCTCCGCCCCTTTCTCCCTCATTGTATGAACACATTAATGGAGCTCGACTAAAATTGATCTCTTATGATGAATCTGTTGATATTTGTGAAATGTGTTTTGTTGTCTCGAAAGAAAGTATTCAGATATTTTGAAGTGAACCACAAAAATATTTTCTTTGTATGTGAACTACTCTAAAACTTGTGACCGAATTTTCTTGGAGTCCTCAATGTTTTAATTTTAAATACACTTCATTTATGTGCATCCAGTTCATTTGAATATATATATAAATTTATTCTATACTCAAAACTATGACATTGGACGCCTAAATATATTTAAGAGTTCCTATAACTCAACATATTCTACGTGTTCTAAAGCATTCATAAATTTACTTATAATATGTTGCCTCAATTAATTATGCATATCAATGTATATAACTTGTAATGAAACCTCATTTGATGTTGATGCGTAGATTTTGTGCTTAATTTATCTTCATAAATAGACGCTTCTAGAATACACACCCCTCCAAAATGAGCAGGAAGTAGCAATTTTAAGGTCTGCAGACGTATTTAGCCTACATAGTTAGATTATAACACATTCATAATGTAAACATTACTGAAATCATCATTATGTCACCCCCTAACTATTGTGATCTGAGCCAGATAATAATAATGAGAAAAGAGGTAAGCGCAGATAACTACATTAGATGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAA</genome_strand>
        <mrna_strand>GTAGATGTTGCCAAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTATTTAAGCAGTAGCCATATCATTTTAAGCTTTACTTTGTTTATCTCGATCCTCCGCCCCTTTCTCCCTCATTGTATGAACACATTAATGGAGCTCGACTAAAATTGATCTCTTATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACCAAAAAAAAAAAA.....................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368957" ref_strand="+" ref_description="SGN-E368957 [TUS-25-J5](-)">
      <seq>attatgagacttttagagaacagcatggctgagaaaatgcttgcaaataagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttacctcttttctcattattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12441" stop="11327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="11628" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="527"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E368957" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="11628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</genome_strand>
        <mrna_strand>ATTATGAGACTTTTAGAGAACAGCATGGCTGAGAAAATGCTTGCAAATAAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298795" ref_strand="+" ref_description="SGN-E298795 [cLET-44-E10]">
      <seq>ttagatcaggtgatcacattttagctcaactgtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttacctcttttctcattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12280" stop="11327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11980" g_stop="11628" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="365"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E298795" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11980" e_stop="11628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</genome_strand>
        <mrna_strand>TTAGATCAGGTGATCACATTTTAGCTCAACTGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349115" ref_strand="+" ref_description="SGN-E349115 [cTOS-2-L19]">
      <seq>tatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12574" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12274" g_stop="11636" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E349115" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12274" e_stop="11636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTC</genome_strand>
        <mrna_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350296" ref_strand="+" ref_description="SGN-E350296 [cTOS-4-N14]">
      <seq>tatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12574" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12274" g_stop="11636" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E350296" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12274" e_stop="11636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTC</genome_strand>
        <mrna_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739196" ref_strand="+" ref_description="SGN-E739196 [LC16CA05]">
      <seq>aaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12387" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12087" g_stop="11636" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739196" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12087" e_stop="11636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTC</genome_strand>
        <mrna_strand>AAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369962" ref_strand="+" ref_description="SGN-E369962 [TUS-26-J5](-)">
      <seq>tttagagacagggtggtttacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggccagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttttatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtagaagacagttgaatcgttatcctcgtattgctcattttatgtagttatctgcgcttgcctcttttaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12507" stop="11337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12207" g_stop="11637" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="593"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E369962" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12207" e_stop="11637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTT</genome_strand>
        <mrna_strand>TTTAGAGACAGGGTGGTTTACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGCCAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTTTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGAAGACAGTTGAATCGTTATCCTCGTATTGCTCATTTTATGTAGTTATCTGCGCTTGCCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349421" ref_strand="+" ref_description="SGN-E349421 [cTOS-1-N9]">
      <seq>ttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12597" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="11638" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E349421" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="11638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTT</genome_strand>
        <mrna_strand>TTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344963" ref_strand="-" ref_description="SGN-E344963 [cTOF-22-G24]">
      <seq>attatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtagttatctgcgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12441" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="11645" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="525"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E344963" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="11645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTA</genome_strand>
        <mrna_strand>ATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696503" ref_strand="+" ref_description="SGN-E696503 [LH_Ea09E21](-)">
      <seq>tcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaggaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccttcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcctttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgcgaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacaaagtatactggattaagattgtagttggtcacaagaaagtgttgtattgacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgttgtccacggattgctcatctaatgtagttatctgcgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12791" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12491" g_stop="11650" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="845" polyA_stop="858"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E696503" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12491" e_stop="11650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGC</genome_strand>
        <mrna_strand>TCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAGGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCTTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCCTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGCGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACA-AAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTGACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTTGTCCACGGATTGCTCATCTAATGTAGTTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348977" ref_strand="+" ref_description="SGN-E348977 [cTOF-29-D7]">
      <seq>ccaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtattgctcatctaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12478" stop="11359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12179" g_stop="11650" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E348977" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12179" e_stop="11650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGC</genome_strand>
        <mrna_strand>CCAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735808" ref_strand="+" ref_description="SGN-E735808 [LC03AH08]">
      <seq>ccgttttttagatgagcaatacgaggataacgattcaactgtcgcctacaataaactagatatgttttttgataaggagtgtcttgttaatacaatactttcttgtgaccaactacaatcttaatccagtatacttctgtaaaatcattaaagatcaacatagaaaggatgctgccttctcgacgtggcaagatttacctgagcattcccagagataaactcaaaagttgcttcataagccccacaaagcttagtggccaacacaaatgaactcttaaaagaccacacagagactgttgagctaaaatgtgatcacctgatctaaacggggataggctcaggagccggatccgagggagtaccactacttccattgaggacagtcacattgccatctgaatcaacgtccacgataactgaatcaccttctttaatctcatttgcaagcattttctcagccatgctgtcctctaaaagtctcataatagctcttctcagaggtcgtgctccatagctagggttgtatccctcgtcaaccaccctgtctctaaacctctctgtcacttgaagttctatctccttaactttcaacctctcaaagacctccttaagcatgatatcagctatctccttaacctctaacttagtgagctgacggaatacaatcatctcatccaatctgttcaaaaactctggcctgaagtactgcttcaattcttctgtcactaagctcttgatgcgattgtaactgctatccttctcatcaaggtcgagatcaaaacctatacgacggccacctttctcaattacactacttccaacattttgatgtccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11363" stop="12792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11656" g_stop="12492" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E735808" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11656" e_stop="12492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACATTAGATGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCTTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAAACCTATACGACGGCCACCTTTCTCAATTACACTACTTCCAACA-TTTGATGT-CATGAT</genome_strand>
        <mrna_strand>CCGTTTTTTAGATGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCTTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAAACCTATACGACGGCCACCTTTCTCAATTACACTACTTCCAACATTTTGATGTCCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589543" ref_strand="-" ref_description="SGN-E589543 [43119]">
      <seq>aggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggtttacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgttgtcctgtatctctcatcttatgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12654" stop="11358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12354" g_stop="11662" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="715"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E589543" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12354" e_stop="11662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAAT</genome_strand>
        <mrna_strand>AGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTTACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTTGTCCT-GTATCTCTCATCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617169" ref_strand="+" ref_description="SGN-E617169 [90644]">
      <seq>gctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgttgtccttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12300" stop="11375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12000" g_stop="11663" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E617169" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12000" e_stop="11663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAA</genome_strand>
        <mrna_strand>GCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTTGTCCTTGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397703" ref_strand="+" ref_description="SGN-E397703 [TUS-46-F11]">
      <seq>tttttttttacgaggatttcgattcaactgtcgcctacaataaactagatatgttttttgataaggagtgtcttgttaatacaatactttcttgtgaccaactacaatcttaatccagtatacttctgtaaaatcattaaagatcaacatagaaaggatgctgccttctcgacgtggcaagatttacctgagcattcccagagataaactcaaaagttgcttcataagccccacaaagcttattggccaacacaaatgaactcttaaaagaccacacagagactgttgagctaaaatgtgatcacctgatcttatcggggataggctcaagagccggatccgagggagtaccacaacttcctttgatgaacagtattttgcccatctgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11375" stop="12358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11667" g_stop="12058" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E397703" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11667" e_stop="12058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGA-GGACAGTCACATTGCCATCTGAATCA</genome_strand>
        <mrna_strand>TTTTTTTTTACGAGGATTTCGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTATTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTTATCGGGGATAGGCTCAAGAGCCGGATCCGAGGGAGTACCACAACTTCCTTTGATGAACAGTATTTTGCCCATCTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371435" ref_strand="+" ref_description="SGN-E371435 [TUS-29-H10]">
      <seq>ttttttttacgaggataacgattcaactgtcgcctacaataaactagatatgttttttgataaggagtgtcttgttaatacaatactttcttgtgaccaactacaatcttaatccagtatacttctgtaaaatcattaaagatcaacatagaaaggatgctgccttctcgacgtggcaagatttacctgagcattcccagagataaactcaaaagttgcttcataagccccacaaagcttagtggccaacacaaatgaactcttaaaagaccacacagagactgttgagctaaaatgtgatcacctgatctaaacggggataggctcaggagccggatccgagggagtaccactacttccattgaggacagtcacattgccatctgaatcaacgtccacgataactgaatcaccttctttaatctcatttgcaagcattttctcagccatgctgtcctctaaaagtctcataatagctcttctcagaggtcgtgctccatagctagggttgtatccctcgtcaaccaccctgtctctaaacctctctgtcacttgaagttctatctccttaactttcaacctctcaaagacctccttaagcatgatatcagctatctccttaacctctaacttagtgagctgacggaatacaatcatctcatccaatctgttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11375" stop="12644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11668" g_stop="12344" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E371435" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11668" e_stop="12344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAA</genome_strand>
        <mrna_strand>TTTTTTTTACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280435" ref_strand="+" ref_description="SGN-E280435 [cLER-1-H20]">
      <seq>ttttttttacgaggataacgattcaactgtcgcctacaataaactagatatgttttttgataaggagtgtcttgttaatacaatactttcttgtgaccaactacaatcttaatccagtatacttctgtaaaatcattaaagatcaacatagaaaggatgctgccttctcgacgtggcaagatttacctgagcattcccagagataaactcaaaagttgcttcataagccccacaaagcttagtggccaacacaaatgaactcttaaaagaccacacagagactgttgagctaaaatgtgatcacctgatctaaacggggataggctcaggagccggatccgagggagtaccactacttccattgaggacagtcacattgccatctgaatcaacgtccacgataactgaatcaccttctttaatctcatttgcaagcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11375" stop="12407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11668" g_stop="12107" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E280435" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11668" e_stop="12107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTT</genome_strand>
        <mrna_strand>TTTTTTTTACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612843" ref_strand="+" ref_description="SGN-E612843 [62610]">
      <seq>gttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgttgtccttgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12598" stop="11375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="11672" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E612843" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="11672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTG</genome_strand>
        <mrna_strand>GTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTTGTCCTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689847" ref_strand="+" ref_description="SGN-E689847 [LH_Ea01P13]">
      <seq>cattttgtcctcaatggaagtagtggtactccttcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcctttaagagttcatttgtgttggccactaagctttgtgggggtgatgaagcaacttttgagtttatctctgccaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacaaagtatactggattaagattgtagttggtcacaagaaagtgttgtattgacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgtgggggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12337" stop="11385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12042" g_stop="11675" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E689847" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12042" e_stop="11675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTA</genome_strand>
        <mrna_strand>CATTTTGTCCTCAATGGAAGTAGTGGTACTCCTTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCCTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGGTGATGAAGCAACTTTTGAGTTTATCTCTGCCAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACA-AAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTGACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTGGGGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617039" ref_strand="-" ref_description="SGN-E617039 [90512]">
      <seq>agaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaatcgttgtccttgtaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12595" stop="11375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12295" g_stop="11676" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="642"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E617039" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617039" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12295" e_stop="11676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGT</genome_strand>
        <mrna_strand>AGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATCGTTGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542990" ref_strand="+" ref_description="SGN-E542990 [TUS-64-J6](-)">
      <seq>agaagagctattatgagacttttagaggacagcatggctgagaaaatgctgcaaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttatcctcgtaaaaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12450" stop="11375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12150" g_stop="11676" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="499"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E542990" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12150" e_stop="11676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGT</genome_strand>
        <mrna_strand>AGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTGCAAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365710" ref_strand="-" ref_description="SGN-E365710 [cLPT-8-C10]">
      <seq>agtggtactccctcggatccggctcctgagcctatccccgtttagatcgggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacatttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcgcaagaaagtgttgtattgacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaattgttgtcctcgtaaaaaaaacaaaaaaaaaaactcgaggctagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12321" stop="11375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12021" g_stop="11676" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E365710" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12021" e_stop="11676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGT</genome_strand>
        <mrna_strand>AGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCGGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACATTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCGCAAGAAAGTGTTGTATTGACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAATTGTTGTCCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737965" ref_strand="+" ref_description="SGN-E737965 [LC11DD12]">
      <seq>cccgggctgcaggaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12774" stop="11389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12466" g_stop="11681" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="796" r_length="786" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E737965" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12466" e_stop="11681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATC</genome_strand>
        <mrna_strand>AGGAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696362" ref_strand="+" ref_description="SGN-E696362 [LH_Ea08O24](-)">
      <seq>catcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaggaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccttcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcctttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgcgaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacaaagtatactggattaagattgtagttggtcacaagaaagtgttgtattgacaagacactccttatcaaaggacatatctagtttatgtaggcgacagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12793" stop="11389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12493" g_stop="11684" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E696362" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12493" e_stop="11684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</genome_strand>
        <mrna_strand>CATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAGGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCTTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCCTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGCGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACA-AAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTGACAAGACACTCCTTATCAAAGGACATATCTAGTTTA-TGTAGGCGACAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556374" ref_strand="+" ref_description="SGN-E556374 [cTSD-3-E21]">
      <seq>ggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12592" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12292" g_stop="11684" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="632"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E556374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12292" e_stop="11684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</genome_strand>
        <mrna_strand>GGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239028" ref_strand="+" ref_description="SGN-E239028 [cLEL-9-C19](-)">
      <seq>agcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12420" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12120" g_stop="11684" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E239028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12120" e_stop="11684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</genome_strand>
        <mrna_strand>AGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239259" ref_strand="+" ref_description="SGN-E239259 [cLEL-9-C19](-)">
      <seq>aaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaatcgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12407" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12107" g_stop="11684" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E239259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12107" e_stop="11684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</genome_strand>
        <mrna_strand>AAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613899" ref_strand="+" ref_description="SGN-E613899 [63679]">
      <seq>ctaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgctgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12602" stop="11389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12302" g_stop="11686" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E613899" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12302" e_stop="11686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCG</genome_strand>
        <mrna_strand>CTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGCTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693687" ref_strand="+" ref_description="SGN-E693687 [LH_Ea01P13](-)">
      <seq>ctgtcctcaatggaagtagtggtactccttcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcctttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagttcatctctgcgaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacaaagtatactggattaagattgtagttggtcacaaaaggagtgttgtattgacaagacactccttatcaaaaatcaaatgtagtttattgtaggcgacagttaaatcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12338" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12038" g_stop="11687" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="367"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E693687" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12038" e_stop="11687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGA-AAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATC</genome_strand>
        <mrna_strand>CTGTCCTCAATGGAAGTAGTGGTACTCCTTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCCTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTCATCTCTGCGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACA-AAGTATACTGGATTAAGATTGTAGTTGGTCACAAAAGGAGTGTTGTATTGACAAGACACTCCTTATCAAAAATCAAATGTAGTTTATTGTAGGCGACAGTTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234573" ref_strand="+" ref_description="SGN-E234573 [cLEL-6-O2](-)">
      <seq>gtggggcttatgaagcaacttttgagtttatctctgggaatgttcaggtaaatcttgccgcgtcgagaaggcagcatcctttcaatgttgatctttaatgattttacagaagtatgctggattaagattgtagttggtcacaagaaagtattgtattatcaagacactccttatcaaaaaacaaatctagtttattgtaggcgacagttgaataattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12200" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11900" g_stop="11687" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="218" polyA_stop="234"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E234573" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11900" e_stop="11687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATC</genome_strand>
        <mrna_strand>GTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGTTCAGGTAAATCTTGCCGCGTCGAGAAGGCAGCATCCTTTCAATGTTGATCTTTAATGATTTTACAGAAGTATGCTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTATCAAGACACTCCTTATCAAAAAACAAATCTAGTTTATTGTAGGCGACAGTTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352496" ref_strand="+" ref_description="SGN-E352496 [cTOS-9-A10]">
      <seq>tatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaagcgacagttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12574" stop="11388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12274" g_stop="11688" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E352496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12274" e_stop="11688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAAT</genome_strand>
        <mrna_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAAGCGACAGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734538" ref_strand="+" ref_description="SGN-E734538 [LB12DG04]">
      <seq>gattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12635" stop="11389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12335" g_stop="11690" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="659"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E734538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12335" e_stop="11690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGA</genome_strand>
        <mrna_strand>GATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441388" ref_strand="-" ref_description="SGN-E441388 [cSTA-30-A14]">
      <seq>gctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgacagttaaaaaaaaaaaaaaaaaactcgaactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12579" stop="11389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12279" g_stop="11690" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="609"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E441388" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441388" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12279" e_stop="11690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGA</genome_strand>
        <mrna_strand>GCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352087" ref_strand="+" ref_description="SGN-E352087 [cTOS-13-F4]">
      <seq>tctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaacatatctagtttattgtaggcgacagttgaaatcgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12454" stop="11383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12154" g_stop="11690" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="489"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E352087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12154" e_stop="11690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGA</genome_strand>
        <mrna_strand>TCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATC-AAAAACATATCTAGTTTATTGTAGGCGACAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348393" ref_strand="+" ref_description="SGN-E348393 [cTOF-27-D13]">
      <seq>cttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtcacaagaaagtattgtattaacaagacactccttatcaaaaaacatatctagtttattgtaggcgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12685" stop="11395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12385" g_stop="11691" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E348393" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12385" e_stop="11691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTG</genome_strand>
        <mrna_strand>CTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698373" ref_strand="+" ref_description="SGN-E698373 [FA06AD12]">
      <seq>cgcgtttgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggatttaaattgtagttggtcacaagcaaagtattgtattaccaagacactccttatcaaaaaacatattctatttattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12842" stop="11402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12545" g_stop="11692" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E698373" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12545" e_stop="11692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAG-AAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTT</genome_strand>
        <mrna_strand>CGCGTTTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTTAAATTGTAGTTGGTCACAAGCAAAGTATTGTATTACCAAGACACTCCTTATCAAAAAACATATTCTATTTATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404957" ref_strand="+" ref_description="SGN-E404957 [PPC-15-P10]">
      <seq>gaaagtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgagctttaatgattttacagaaatatattggattaagattgtagttggtcacaagaaagtgttgtattaacaagacactccttatcaaaaaacatatctagtttattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12384" stop="11402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12084" g_stop="11702" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E404957" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12084" e_stop="11702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTA</genome_strand>
        <mrna_strand>GAAAGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTACAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378470" ref_strand="+" ref_description="SGN-E378470 [TUS-46-F11]">
      <seq>gataaggagtgtcttgttaatacaatactttcttgtgaccaactacaatcttaatccagtatacttctgtaaaatcattaaagatcaacatagaaaggatgctgccttctcgacgtggcaagatttacctgagcattcccagagataaactcaaaagttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11426" stop="12189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11726" g_stop="11889" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E378470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11726" e_stop="11889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTC</genome_strand>
        <mrna_strand>GATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323471" ref_strand="+" ref_description="SGN-E323471 [cTOC-7-E9]">
      <seq>gggctgcaggattcggcacgaggcaagttacatagaggtttatagacagggtggttgacgagggatacagccctatttatggagcacgacctctgacaaaagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcaggtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactggattaagattgtagttggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12522" stop="11461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12212" g_stop="11761" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="485" r_length="452" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E323471" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12212" e_stop="11761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCA</genome_strand>
        <mrna_strand>AGAGGTTTATAGACAGGGTGGTTGACGAGGGATACAGCCCTATTTATGGAGCACGACCTCTGACAAAAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253308" ref_strand="+" ref_description="SGN-E253308 [cLEG-26-F9]">
      <seq>tacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcangtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12702" stop="11480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12402" g_stop="11780" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E253308" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12402" e_stop="11780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGA</genome_strand>
        <mrna_strand>TACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCANGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353588" ref_strand="+" ref_description="SGN-E353588 [cTOS-15-F12]">
      <seq>tatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcangtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattttacagaagtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12574" stop="11483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12274" g_stop="11783" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E353588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12274" e_stop="11783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACT</genome_strand>
        <mrna_strand>TATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCANGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247905" ref_strand="+" ref_description="SGN-E247905 [cLEF-47-H15]">
      <seq>tcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtgtttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggaccacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcangtaaatcttgccacgtcgagaaggcagcatcctttctatgttgatctttaatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12692" stop="11497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12392" g_stop="11797" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E247905" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12392" e_stop="11797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTT</genome_strand>
        <mrna_strand>TCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTGTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGACCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCANGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406585" ref_strand="+" ref_description="SGN-E406585 [PPI-4-E12]">
      <seq>tgttagaaggacagcatggctgagaaaatgcttgcaggtgagatcaaagaaggtgaattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttaaacaggtgatcacattttagctcaacagtctgtctatcgtcttttaggagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagttttatctctgggaatgctcgggtaaatcttgccacgtcgagaangcagcatcctttctatgttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12431" stop="11507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11807" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E406585" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAG-AGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTG-ATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAG-TTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCT</genome_strand>
        <mrna_strand>TGTTAGAAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATCAAAGAAGGTGAATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTA-AACAGGTGATCACATTTTAGCTCAACAGTCTGTCTATCGTCTTTTAGGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTCGGGTAAATCTTGCCACGTCGAGAANGCAGCATCCTTTCTATGTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585606" ref_strand="+" ref_description="SGN-E585606 [68068]">
      <seq>tcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtgatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagatcaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagaacaggtgatcacattttagctcaacagtctgtctatcgtcttttaggagttcattttgtgttggcccactaaaggctttggtgggggcttatggaagacaactttttgagttttatctctgggaatgctcggggtaaatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12889" stop="11543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12589" g_stop="11843" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E585606" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12589" e_stop="11843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCG-CATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCA-TTTGTGTTGG-CCACT-AA-GCTTT-GT-GGGGCTTAT-GAAG-CAAC-TTTTGAG-TTTATCTCTGGGAATGCTC-AGGTAAATCTTGC</genome_strand>
        <mrna_strand>TCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTGATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATCAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGAACAGGTGATCACATTTTAGCTCAACAGTCTGTCTATCGTCTTTTAGGAGTTCATTTTGTGTTGGCCCACTAAAGGCTTTGGTGGGGGCTTATGGAAGACAACTTTTTGAGTTTTATCTCTGGGAATGCTCGGGGTAAATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403987" ref_strand="+" ref_description="SGN-E403987 [PPC-12-G18]">
      <seq>ttgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagatcaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagaacaggtgatcacattttagctcaacagtctgtctatcgtcttttaggagttcatttgtgttggcccactagctttgtggggcttatgaagcaacttttgagtttatctctgggaatgctcgggtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12899" stop="11548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12599" g_stop="11848" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E403987" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12599" e_stop="11848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAAT</genome_strand>
        <mrna_strand>TTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATCAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGAACAGGTGATCACATTTTAGCTCAACAGTCTGTCTATCGTCTTTTAGGAGTTCATTTGTGTTGGCCCACTAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCGGGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405196" ref_strand="+" ref_description="SGN-E405196 [PPC-16-P8]">
      <seq>tgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggacccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcatatgaaagcaacttttgagttttatctctgggaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12366" stop="11556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12067" g_stop="11856" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E405196" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12067" e_stop="11856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG-AAGCAACTTTTGAG-TTTATCTCTGGGAATGCTC</genome_strand>
        <mrna_strand>TGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCAACTTTTGAGTTTTATCTCTGGGAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292724" ref_strand="+" ref_description="SGN-E292724 [cLET-11-J21]">
      <seq>tgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatgaagcaacttttgagtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12577" stop="11571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12277" g_stop="11872" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="419"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E292724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12277" e_stop="11872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTT</genome_strand>
        <mrna_strand>TGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708823" ref_strand="+" ref_description="SGN-E708823 [FA36DE02]">
      <seq>gattcactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcgaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgaaaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttactgacagaaaaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttatagacagggtggttgacgagggatactaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13016" stop="11589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12716" g_stop="11889" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E708823" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12716" e_stop="11889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG</genome_strand>
        <mrna_strand>GATTCACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCGAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAAAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTACTGACAGAAAAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTATAGACAGGGTGGTTGACGAGGGATACTACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739511" ref_strand="+" ref_description="SGN-E739511 [LC17DA09]">
      <seq>ggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctctgtgtggtcttttaagagttcatttgtgttggccactaagctttgtggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13106" stop="11593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12806" g_stop="11893" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="914" r_length="914" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12806" e_stop="11893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCT</genome_strand>
        <mrna_strand>GGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692663" ref_strand="+" ref_description="SGN-E692663 [LH_Ea09E21]">
      <seq>ctgttaggatccccccctggttatgttggttacacagagggcggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaggaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttattgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccttcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctgtctgtggtccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12995" stop="11631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12699" g_stop="11931" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E692663" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12699" e_stop="11931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTA</genome_strand>
        <mrna_strand>CTGTTAGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGCGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAGGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATTGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCTTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213610" ref_strand="+" ref_description="SGN-E213610 [cLEC-76-K15]">
      <seq>agacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggagggtctttgagaaggtgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgaaggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12835" stop="11644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12535" g_stop="11944" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E213610" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12535" e_stop="11944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGA-GGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCT</genome_strand>
        <mrna_strand>AGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGGTCTTTGAGAAGGTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAAGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202621" ref_strand="+" ref_description="SGN-E202621 [cLEC-19-H8]">
      <seq>agacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgagattaaagaaggtgattcagttatcgtggacgttgattcagatggcaatgtgactgtcctcaatggaagtagtggtactccctcggatccggctcctgagcctatccccgtttagatcaggtgatcacattttagctcaacagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12835" stop="11644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12535" g_stop="11944" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E202621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12535" e_stop="11944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCT</genome_strand>
        <mrna_strand>AGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571855" ref_strand="+" ref_description="SGN-E571855 [30918]">
      <seq>ctcattggatccccccctggtttatgttggttacacggagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagaaaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgcaggtgagattaaagaaggtgattcagttattgtgggaccgttgattcagatgggcaatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12999" stop="11739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12699" g_stop="12042" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E571855" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12699" e_stop="12042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGATCCCCCCCTGG-TTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGT-GGA-CGTTGATTCAGAT-GGCAATG</genome_strand>
        <mrna_strand>CTCATTGGATCCCCCCCTGGTTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGGGACCGTTGATTCAGATGGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281930" ref_strand="+" ref_description="SGN-E281930 [cLES-2-H6]">
      <seq>aagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12828" stop="11791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12528" g_stop="12091" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E281930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12528" e_stop="12091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAG</genome_strand>
        <mrna_strand>AAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279864" ref_strand="+" ref_description="SGN-E279864 [cLER-8-A21]">
      <seq>aaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttatagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12781" stop="11791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12481" g_stop="12091" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E279864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12481" e_stop="12091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAG</genome_strand>
        <mrna_strand>AAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTATAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263908" ref_strand="+" ref_description="SGN-E263908 [cLEG-64-E7]">
      <seq>ggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13081" stop="11793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12781" g_stop="12093" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E263908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12781" e_stop="12093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATG</genome_strand>
        <mrna_strand>GGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344961" ref_strand="+" ref_description="SGN-E344961 [cTOF-22-G20]">
      <seq>ctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgcttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13187" stop="11795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12887" g_stop="12095" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E344961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12887" e_stop="12095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAA</genome_strand>
        <mrna_strand>CTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410015" ref_strand="+" ref_description="SGN-E410015 [PPI-15-F4]">
      <seq>attggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtatttgagaggttgaaagttaaggaaatagaacttcaagtgacagagaggtttagagacagggtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagactgttagaggacagcatggctgagaaaatgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12996" stop="11798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12696" g_stop="12098" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E410015" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12696" e_stop="12098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGC</genome_strand>
        <mrna_strand>ATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGAAAGTTAAGGAAATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293537" ref_strand="+" ref_description="SGN-E293537 [cLET-15-B17]">
      <seq>tttgatctcgaccttgatgagaaggatagcagttacaatcgcatcacgagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagagggtaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttagagacagtgtggttgacgagggatacaaccctagctatggagcacgacctctgagaagagctattatgagacttttagaggacagcatggctgagaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12735" stop="11802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12435" g_stop="12102" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E293537" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12435" e_stop="12102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGC</genome_strand>
        <mrna_strand>TTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCACGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGGTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGTGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293538" ref_strand="+" ref_description="SGN-E293538 [cLET-15-B17](-)">
      <seq>gcattttctcagccatgctgtcctctaaaagtctcataatagctcttctcagaggtcgtgctccatagctagggttgtatccctcgtcaaccacactgtctctaaacctctctgtcacttgaagttctatctccttaactttcaacctctcaaagacctccttaagcatgatatcagctatctccttaccctctaacttagtgagctgacggaatacaatcatctcatccaatctgttcaaaaactctggcctgaagtactgcttcaattcttctgtcactaagctcgtgatgcgattgtaactgctatccttctcatcaaggtcgagatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11802" stop="12735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12102" g_stop="12435" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E293538" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12102" e_stop="12435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCTTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAA</genome_strand>
        <mrna_strand>GCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACACTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTACCCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCGTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420445" ref_strand="+" ref_description="SGN-E420445 [STM-31-A16]">
      <seq>gtcgaccttacactgttgtgctctttgatgagattgagaaggctcatcctgatgtctttaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggcagaactgtcgacttcaagaatacactcctcatcatgacatcgaatgttggaagcagtgtgatagagaaaggaggtcgtcgtataggttttgatctagattttgacgagaaggatagtagttacaaccgtatcaagagcttggtgactgaggagttgaaacagtacttcaggccagagttcttaaacagattagatgagatgattgtattccgtcagctcactaagttggaggtgaaggagattgctgatatcatgcttaaggaggtctttgtgaggttgaagaataaggagatagaacttcaagtgacagagaggtttagagacagggtggttgatgaaggatacaacccaagctatggagctaggccattgaggagagctattatgagactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12932" stop="11831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12632" g_stop="12128" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E420445" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12632" e_stop="12128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTT</genome_strand>
        <mrna_strand>GTCGACCTTACACTGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTTAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGCAGAACTGTCGACTTCAAGAATACACTCCTCATCATGACATCGAATGTTGGAAGCAGTGTGATAGAGAAAGGAGGTCGTCGTATAGGTTTTGATCTAGATTTTGACGAGAAGGATAGTAGTTACAACCGTATCAAGAGCTTGGTGACTGAGGAGTTGAAACAGTACTTCAGGCCAGAGTTCTTAAACAGATTAGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTGGAGGTGAAGGAGATTGCTGATATCATGCTTAAGGAGGTCTTTGTGAGGTTGAAGAATAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGATGAAGGATACAACCCAAGCTATGGAGCTAGGCCATTGAGGAGAGCTATTATGAGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737310" ref_strand="+" ref_description="SGN-E737310 [LC09BA05]">
      <seq>agaaggtctccactgacgaatcttaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgcttaaggaggtctttgagaggttgaaagttaaggagatagaacttcaagtgacagagaggtttaaagacagggtggttgacgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13289" stop="11881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12989" g_stop="12181" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E737310" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12989" e_stop="12181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGA</genome_strand>
        <mrna_strand>AGAAGGTCTCCACTGACGAATCTTACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAAAGACAGGGTGGTTGACGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254171" ref_strand="+" ref_description="SGN-E254171 [cLEG-34-K16]">
      <seq>ttgatatgagtgagtttatggaaagacacactgtgtctaaactcatcggttcaccccctgggtatgttggttacactgaaggtggtcaattaactgaagctgtgaggcgtcgaccttacactgttgtgctctttgacgagattgagaaggctcatcctgatgtctttaacatgatgcttcaaattcttgaagatggaagattgacagacagcaaaggcagaactgtcgacttcaagaatacactcctcatcatgacatcgaatgttggaagcagtgtgatagagaaaggaggtcgtcgtataggttttgatctagattttgacgagaaggatagtagttacaaccgtatcaagagcttggtgactgaggagttgaaacagtacttcaggccagagtttttaaacagattagatgagatgattgtattccgtcagctcactaagttggaggtgaaggagattgccgatatcatgcttaaggaggtctttgtgaggttgaagaataaggagatagaactccaagtgacagagaggtttagagatagggtagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13040" stop="11886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12740" g_stop="12186" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E254171" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12740" e_stop="12186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACG</genome_strand>
        <mrna_strand>TTGATATGAGTGAGTTTATGGAAAGACACACTGTGTCTAAACTCATCGGTTCACCCCCTGGGTATGTTGGTTACACTGAAGGTGGTCAATTAACTGAAGCTGTGAGGCGTCGACCTTACACTGTTGTGCTCTTTGACGAGATTGAGAAGGCTCATCCTGATGTCTTTAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAAGGCAGAACTGTCGACTTCAAGAATACACTCCTCATCATGACATCGAATGTTGGAAGCAGTGTGATAGAGAAAGGAGGTCGTCGTATAGGTTTTGATCTAGATTTTGACGAGAAGGATAGTAGTTACAACCGTATCAAGAGCTTGGTGACTGAGGAGTTGAAACAGTACTTCAGGCCAGAGTTTTTAAACAGATTAGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTGGAGGTGAAGGAGATTGCCGATATCATGCTTAAGGAGGTCTTTGTGAGGTTGAAGAATAAGGAGATAGAACTCCAAGTGACAGAGAGGTTTAGAGATAGGGTAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402835" ref_strand="+" ref_description="SGN-E402835 [PPC-8-H24]">
      <seq>taaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaataggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacacggtctctaagctcattggatccccccctggttatgttggttacacggagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcactaagttagaggttaaggagatagctgatatcatgcttaaggangtatttgagaggttgaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13256" stop="11938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12956" g_stop="12238" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E402835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12956" e_stop="12238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTT</genome_strand>
        <mrna_strand>TAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTCATTGGATCCCCCCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGANGTATTTGAGAGGTTGAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279098" ref_strand="+" ref_description="SGN-E279098 [cLEL-4-K4](-)">
      <seq>ttcaaagacttccttaagcatgatatcagctatatccttagcatctaacttagttagctgtaggaatacaatcatctcatccgatctgttcaaaaactctggcctgaagtactgtttcaattcttctgtcactaagctcttaatgcgattgtaactgctatccttctcatcaaggtcgagatcaaaacctatacgacggccacctttctcaattacactacttccaacatttgatgtcatgatgataagtgtgttcttgaaatctacaggtctacccttgctgtcagtcaatcttccatcttcaagaatttgaagcatcatgttgaagacatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11951" stop="12888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12250" g_stop="12585" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E279098" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12250" e_stop="12585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCTTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAAACCTATACGACGGCCACCTTTCTCAATTACACTACTTCCAACATTTGATGTCATGATGAGAAGTGTGTTCTTGAAATCTACAGTTCTACCCTTGCTGTCTGTCAATCTTCCATCTTCAAGAATTTGAAGCATCATGTTGAAGACATCAGG</genome_strand>
        <mrna_strand>TTCAAAGACTTCCTTAAGCATGATATCAGCTATATCCTTAGCATCTAACTTAGTTAGCTGTAGGAATACAATCATCTCATCCGATCTGTTCAAAAACTCTGGCCTGAAGTACTGTTTCAATTCTTCTGTCACTAAGCTCTTAATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAAACCTATACGACGGCCACCTTTCTCAATTACACTACTTCCAACATTTGATGTCATGATGATAAGTGTGTTCTTGAAATCTACAGGTCTACCCTTGCTGTCAGTCAATCTTCCATCTTCAAGAATTTGAAGCATCATGTTGAAGACATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704385" ref_strand="+" ref_description="SGN-E704385 [FA24AF01]">
      <seq>gacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaangagatagctgatatcatgcttaaggaggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13275" stop="11952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12975" g_stop="12252" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E704385" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12975" e_stop="12252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTG</genome_strand>
        <mrna_strand>GACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAANGAGATAGCTGATATCATGCTTAAGGAGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211909" ref_strand="+" ref_description="SGN-E211909 [cLEC-66-O11]">
      <seq>gaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagttttttgacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13105" stop="11966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12805" g_stop="12266" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E211909" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12805" e_stop="12266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCT</genome_strand>
        <mrna_strand>GAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTTGACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336945" ref_strand="+" ref_description="SGN-E336945 [cTOE-5-O23]">
      <seq>aaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagttagaggttaaggagatagctgatatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13019" stop="11966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12719" g_stop="12266" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E336945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12719" e_stop="12266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCT</genome_strand>
        <mrna_strand>AAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262057" ref_strand="+" ref_description="SGN-E262057 [cLEG-58-N16]">
      <seq>cgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13318" stop="11996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13018" g_stop="12296" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E262057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13018" e_stop="12296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTT</genome_strand>
        <mrna_strand>CGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246555" ref_strand="+" ref_description="SGN-E246555 [cLEF-45-B13]">
      <seq>cagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcactaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13326" stop="11998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13026" g_stop="12298" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E246555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13026" e_stop="12298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAG</genome_strand>
        <mrna_strand>CAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590299" ref_strand="+" ref_description="SGN-E590299 [43891]">
      <seq>cagatacaggtcctcttggtaacagaagcagatattcagcacatcgtctcttctgggactggtatccctggttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaataggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacacggtctctaagctcattggatccccccctggttatgttggttacacggagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcaactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13361" stop="12001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13061" g_stop="12301" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E590299" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13061" e_stop="12301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATACAGGTCCACTT-GTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCT-GTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACT</genome_strand>
        <mrna_strand>CAGATACAGGTCCTCTTGGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTGGGACTGGTATCCCTGGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTCATTGGATCCCCCCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294543" ref_strand="+" ref_description="SGN-E294543 [cLET-22-I8]">
      <seq>acgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13174" stop="12002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12874" g_stop="12302" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E294543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12874" e_stop="12302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCAC</genome_strand>
        <mrna_strand>ACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247492" ref_strand="+" ref_description="SGN-E247492 [cLEF-42-E15]">
      <seq>caggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattccgtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13218" stop="12006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12918" g_stop="12306" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E247492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12918" e_stop="12306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGC</genome_strand>
        <mrna_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708631" ref_strand="+" ref_description="SGN-E708631 [FA36BB11]">
      <seq>caaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaaacagtacttcaggccagagtttttaaacagattggatgagatgaatgtattccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13399" stop="12011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13099" g_stop="12311" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E708631" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13099" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCG</genome_strand>
        <mrna_strand>CAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAACAGTACTTCAGGCCAGAGTTTTTAAACAGATTGGATGAGATGAATGTATTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709061" ref_strand="+" ref_description="SGN-E709061 [FA42CD01]">
      <seq>ccgcgtgaaggtctccactgacgaatctgaccgtctcctaaaactggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtactgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatgattgtattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13290" stop="12012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12995" g_stop="12312" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E709061" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12995" e_stop="12312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCC</genome_strand>
        <mrna_strand>CCG-CGTGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAACTGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTACTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272768" ref_strand="+" ref_description="SGN-E272768 [cLEM-21-B20]">
      <seq>caggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtacttcaggccagagtttttgaacagattggatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13218" stop="12021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12918" g_stop="12321" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E272768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12918" e_stop="12321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGA</genome_strand>
        <mrna_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404714" ref_strand="+" ref_description="SGN-E404714 [PPC-15-C21]">
      <seq>agtgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaataagcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacacggtctctaagctcattggatccccccctggttatgttggttacacggagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaagatagcagttacaatcgtatcaagagctcagtgactgaagaattgaagcagtacttcaagccagagtttttgaacagattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13213" stop="12027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12915" g_stop="12327" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E404714" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12915" e_stop="12327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATG</genome_strand>
        <mrna_strand>AGTGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATAAGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTCATTGGATCCCCCCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAAGATAGCAGTTACAATCGTATCAAGAGCTCAGTGACTGAAGAATTGAAGCAGTACTTCAAGCCAGAGTTTTTGAACAGATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404070" ref_strand="+" ref_description="SGN-E404070 [PPC-12-H9]">
      <seq>gaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttcaggccagagtttttgaacagattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12895" stop="12027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12595" g_stop="12327" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E404070" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12595" e_stop="12327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATG</genome_strand>
        <mrna_strand>GAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274296" ref_strand="+" ref_description="SGN-E274296 [cLEN-15-A1]">
      <seq>tgttgggaaatcacaactggcaaaggcactggctgcatattactttggttctgaagaagcactgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgacattgagaaggctcatcctgatgtcttcagcatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttatcatcatgacatcaaatgttggaagtagagtaattgacaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagctacaatcgcatcaagagcttagtgaccgaagaattgaagcattacttcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13111" stop="12051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12811" g_stop="12351" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E274296" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12811" e_stop="12351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGC</genome_strand>
        <mrna_strand>TGTTGGGAAATCACAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCACTGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGACATTGAGAAGGCTCATCCTGATGTCTTCAGCATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTATCATCATGACATCAAATGTTGGAAGTAGAGTAATTGACAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGCTACAATCGCATCAAGAGCTTAGTGACCGAAGAATTGAAGCATTACTTCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601023" ref_strand="+" ref_description="SGN-E601023 [54049]">
      <seq>ctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaataggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacggtctctaagctcattggatccccccctggttatgttggttacacggagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgactttgatgagaaggatagcagttacaatcgtatcaagagcttagtgactgaagaattgaagcagtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13376" stop="12055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13076" g_stop="12355" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E601023" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13076" e_stop="12355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTC</genome_strand>
        <mrna_strand>CTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAG--ACACGGTCTCTAAGCTCATTGGATCCCCCCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACTTTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261406" ref_strand="+" ref_description="SGN-E261406 [cLEG-57-D17]">
      <seq>aggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataagttttgatctcgacgttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13388" stop="12057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13088" g_stop="12357" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E261406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13088" e_stop="12357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACT</genome_strand>
        <mrna_strand>AGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAAGTTTTGATCTCGACGTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276113" ref_strand="+" ref_description="SGN-E276113 [cLEN-12-P7]">
      <seq>acagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattgaagcagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13151" stop="12057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12851" g_stop="12357" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E276113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12851" e_stop="12357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACT</genome_strand>
        <mrna_strand>ACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698100" ref_strand="+" ref_description="SGN-E698100 [FA05BA06]">
      <seq>gagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtactgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaagagcttagtgacagaagaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13439" stop="12066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13139" g_stop="12366" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E698100" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13139" e_stop="12366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGA</genome_strand>
        <mrna_strand>GAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTACTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272697" ref_strand="+" ref_description="SGN-E272697 [cLEM-21-C10]">
      <seq>caggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgcatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13218" stop="12088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12918" g_stop="12388" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E272697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12918" e_stop="12388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAG</genome_strand>
        <mrna_strand>CAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249110" ref_strand="+" ref_description="SGN-E249110 [cLEF-49-B18]">
      <seq>tttggttctgaagaagcaatgatcccncgaggggattatttagatcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaggtggccgtcgtataggttttgatctcgaccttgatgagaaggatagcagttacaatcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13068" stop="12093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12768" g_stop="12393" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E249110" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12768" e_stop="12393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCTGAAGAAGCAATGATCCGGC-TTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCA</genome_strand>
        <mrna_strand>TTTGGTTCTGAAGAAGCAATGATCCCNCGAGGGGATTATTTAGATCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692522" ref_strand="+" ref_description="SGN-E692522 [LH_Ea08O24]">
      <seq>tagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgtgctattcgacgtgcacgagttgggctcaagaatcccaacaggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattgagaaaagtggccgtcgtataggttttgatctcgaccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13657" stop="12118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13358" g_stop="13285" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12418" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="815" r_length="741" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E692522" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13358" e_stop="13285"/>
          <exon e_start="13158" e_stop="12418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGAT</genome_strand>
        <mrna_strand>TAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGTGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAAGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285440" ref_strand="+" ref_description="SGN-E285440 [cLES-10-G13]">
      <seq>ttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactggtgatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgttattgagaaaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12974" stop="12149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12674" g_stop="12449" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E285440" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12674" e_stop="12449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGG</genome_strand>
        <mrna_strand>TTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGGTGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTTATTGAGAAAGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254850" ref_strand="+" ref_description="SGN-E254850 [cLEG-33-N11]">
      <seq>gaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggaggaagctgtcaaagccattagtcgcgctattcgacgtgcaccagttgggctcaagaaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagaacacacctgtctctaaactcattggatcccccccctggttatgttggttacaccagagggtggtcaattgactgaagctgttaggcgtcgaccttataccagttgtgctctttgatgaaattgagaaagctcatcctgatgtcttcaacatgatgcttcaaattcttgaagaatggaagaattgacagacagcaagggtagaactgtagatttcaagatacacacttctcatcatgacatcaaatgttggaagtagtgtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13272" stop="12159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12972" g_stop="12459" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E254850" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12972" e_stop="12459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAG-AATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAG-ACACA-CTGTCTCTAAACTCATTGGAT-CCCCCCCTGGTTATGTTGGTTACA-CAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATA-CAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAG-ATGGAAG-ATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGA-ACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTG</genome_strand>
        <mrna_strand>GAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGAGGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACCAGTTGGGCTCAAGAAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGAACACACCTGTCTCTAAACTCATTGGATCCCCCCCCTGGTTATGTTGGTTACACCAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACCAGTTGTGCTCTTTGATGAAATTGAGAAAGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGAATGGAAGAATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGATACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274438" ref_strand="+" ref_description="SGN-E274438 [cLEN-19-K1]">
      <seq>ggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcatattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttggaagtagtgtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13065" stop="12159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12765" g_stop="12459" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E274438" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12765" e_stop="12459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTG</genome_strand>
        <mrna_strand>GGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCATATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267998" ref_strand="+" ref_description="SGN-E267998 [cLEI-15-C12]">
      <seq>aatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgataggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatactgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagagttcaagaacacacttttgattatgacatcaaatgttggaagtagtgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13252" stop="12160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12952" g_stop="12460" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E267998" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12952" e_stop="12460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATT</genome_strand>
        <mrna_strand>AATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGATAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATACTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGAGTTCAAGAACACACTTTTGATTATGACATCAAATGTTGGAAGTAGTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313187" ref_strand="+" ref_description="SGN-E313187 [cTOA-18-J5]">
      <seq>ttcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatcatgacatcaaatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13328" stop="12172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13028" g_stop="12472" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E313187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13028" e_stop="12472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGA</genome_strand>
        <mrna_strand>TTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264625" ref_strand="+" ref_description="SGN-E264625 [cLEG-72-A20]">
      <seq>ctggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctattaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttccacatgatgcttcaaatcttgaagaaggaagattgacagacaagcagggtagaactgtaaatttcaagaacacacttctcatcatgacatcaaatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13304" stop="12173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13004" g_stop="12473" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E264625" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13004" e_stop="12473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGG</genome_strand>
        <mrna_strand>CTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTATTAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCCACATGATGCTTCAAA-TCTTGAAGAAGGAAGATTGACAGACAAGCAGGGTAGAACTGTAAATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702951" ref_strand="+" ref_description="SGN-E702951 [FA20AF03]">
      <seq>cacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtctttcacatgatgcttcaaattcttggagatggaagattgacagacagcaagggtagaactgtagatttcaagaacacacttctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14214" stop="12190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13914" g_stop="13850" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="141" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="231" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12490" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="900" r_length="669" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E702951" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13914" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATC</genome_strand>
        <mrna_strand>CACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTTCACATGATGCTTCAAATTCTTGGAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246366" ref_strand="+" ref_description="SGN-E246366 [cLEF-52-I10]">
      <seq>gaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtcacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13437" stop="12217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13137" g_stop="12517" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E246366" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13137" e_stop="12517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACT</genome_strand>
        <mrna_strand>GAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTCACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448987" ref_strand="+" ref_description="SGN-E448987 [cSTS-5-E1]">
      <seq>atcacagtcctcatagacaaaaacaaagaggtgagcaaggctgaaattgaggctgcagatacaggtcctcttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgacagtctcctaaaaatggaagaaactcttcacacgcgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaagaatcccaacaggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacacggtctctaagcttattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagcaagggtagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13416" stop="12217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13116" g_stop="12517" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E448987" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13116" e_stop="12517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACT</genome_strand>
        <mrna_strand>ATCACAGTCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAATTGAGGCTGCAGATACAGGTCCTCTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACAGTCTCCTAAAAATGGAAGAAACTCTTCACACGCGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGAATCCCAACAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTTATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207970" ref_strand="+" ref_description="SGN-E207970 [cLEC-34-B10]">
      <seq>agataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattgacagacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13634" stop="12229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13334" g_stop="13285" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12529" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="680" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E207970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13334" e_stop="13285"/>
          <exon e_start="13158" e_stop="12529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGC</genome_strand>
        <mrna_strand>AGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252813" ref_strand="+" ref_description="SGN-E252813 [cLEG-16-K3]">
      <seq>gatagagaaatggatctgaaagcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaagcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagaatgacagacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13443" stop="12230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13143" g_stop="12530" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E252813" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13143" e_stop="12530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAG</genome_strand>
        <mrna_strand>GATAGAGAAATGGATCTGAAAGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAAGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGAATGACAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323351" ref_strand="+" ref_description="SGN-E323351 [cTOC-10-O19]">
      <seq>cgtctcctaaaaatggaagaaacacttcacgcacgaaggattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaagatggaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13263" stop="12237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12963" g_stop="12537" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E323351" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12963" e_stop="12537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGA</genome_strand>
        <mrna_strand>CGTCTCCTAAAAATGGAAGAAACACTTCACGCACGAAGGATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248016" ref_strand="+" ref_description="SGN-E248016 [cLEF-47-G4]">
      <seq>cttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatgcctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaattcttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13347" stop="12248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13047" g_stop="12548" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E248016" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13047" e_stop="12548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGA</genome_strand>
        <mrna_strand>CTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATGCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265788" ref_strand="+" ref_description="SGN-E265788 [cLEI-11-L20]">
      <seq>tgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcacaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagctgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacatgatgcttcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13375" stop="12256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13075" g_stop="12556" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E265788" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13075" e_stop="12556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATT</genome_strand>
        <mrna_strand>TGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCACAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGCTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285251" ref_strand="+" ref_description="SGN-E285251 [cLER-20-L16]">
      <seq>tcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgtcgaccttatacagttgtgctctttgatgagattgagaaggctcatcctgatgtcttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13464" stop="12269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13300" g_stop="13285" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12569" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="606" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E285251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13300" e_stop="13285"/>
          <exon e_start="13158" e_stop="12569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACAT</genome_strand>
        <mrna_strand>TCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309995" ref_strand="+" ref_description="SGN-E309995 [cTOA-4-C11]">
      <seq>acgaatctgaccgtctcctaaaaatggaagaaacacttgacacacgaatcattggccaggatgaaactgtcaaagccattagtcgcgctattcgacgtgcacgaggtgggctcaagaatcccaacagacctattgctagtttcatcttttccggacccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggacccccccctggttatgttggttacacagagggtggtcaattgactgaagctgttaggcgccgaccttatacagttgtgctctttgatgagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13274" stop="12296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12974" g_stop="12596" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E309995" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12974" e_stop="12596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGA</genome_strand>
        <mrna_strand>ACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTGACACACGAATCATTGGCCAGGATGAAACTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGGTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGACCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGACCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGCCGACCTTATACAGTTGTGCTCTTTGATGAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624345" ref_strand="+" ref_description="SGN-E624345 [GI|38639312]">
      <seq>atcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaataggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctacatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacacggtctctaagctcattggatccccccctggttatgttggttacacggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13838" stop="12361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13539" g_stop="13459" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="171" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13158" g_stop="12661" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="669" r_length="498" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E624345" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13539" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAG</genome_strand>
        <mrna_strand>ATCAGTGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTCATTGGATCCCCCCCTGGTTATGTTGGTTACACGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249568" ref_strand="+" ref_description="SGN-E249568 [cLEF-56-J24]">
      <seq>gaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccctggttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13668" stop="12374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13368" g_stop="13285" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12674" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="569" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E249568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13368" e_stop="13285"/>
          <exon e_start="13158" e_stop="12674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGT</genome_strand>
        <mrna_strand>GAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325848" ref_strand="+" ref_description="SGN-E325848 [cTOC-12-B18]">
      <seq>gaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgagttcatggaaagacacactgtctctaaactcattggatccccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13614" stop="12382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13314" g_stop="13285" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12682" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="507" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E325848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13314" e_stop="13285"/>
          <exon e_start="13158" e_stop="12682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCT</genome_strand>
        <mrna_strand>GAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554180" ref_strand="+" ref_description="SGN-E554180 [cTSC-3-H24]">
      <seq>gagattccaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaaacaatgatccggcttgatatggagtgagttcatggaaagacaccctgtctctaaactcattggatccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14302" stop="12383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14002" g_stop="13850" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="228" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="318" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12683" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="795" r_length="477" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E554180" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14002" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATAT-GAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCC</genome_strand>
        <mrna_strand>GAGATTCC-ACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAACAATGATCCGGCTTGATATGGAGTGAGTTCATGGAAAGACACCCTGTCTCTAAACTCATTGGATCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258742" ref_strand="+" ref_description="SGN-E258742 [cLEG-50-I23]">
      <seq>tgcagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactggctgcatattactttggttctgaagaagcaatgatccggcttgatatgagtgaggtcatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13343" stop="12418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13043" g_stop="12718" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E258742" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13043" e_stop="12718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAA</genome_strand>
        <mrna_strand>TG-CAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGGTCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345301" ref_strand="+" ref_description="SGN-E345301 [cTOF-13-H4]">
      <seq>cttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggctcaagaatcccaacagacctattgctagtttcatcttttcccgtcccactgggtgtgggaaatcagaactggcaaaggcactggctgcatattactttggttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14238" stop="12458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13938" g_stop="13850" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="165" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="255" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12758" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="656" r_length="401" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E345301" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13938" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGA</genome_strand>
        <mrna_strand>CTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCCGTCCCACTGGGTGTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479781" ref_strand="+" ref_description="SGN-E479781 [cSTD-11-G14]">
      <seq>tggaggagtttccaaccagttaaggtccctgaacctacctgttgatgaaactatacagattctgaaagggcttcgtgagaagtatgagattcatcacaaacttcgttacactgacgaaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttggcctcaagaatcccaatangcctattgctagtttcatcttttccggtccacctggtgtttgggaaatcagaactggcaaaggcactggctacatattactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14305" stop="12466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14007" g_stop="13850" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="236" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="326" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12765" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="721" r_length="395" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E479781" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14007" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTA-CTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAA-GCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTG-TTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTG</genome_strand>
        <mrna_strand>TGGAGGAGTTTCCAACCAGTTAAGGTCCCTGAACCTACCTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAAGTATGAGATTCATCACAAACTTCGTTACACTGACGAAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGCCTCAAGAATCCCAATANGCCTATTGCTAGTTTCATCTTTTCCGGTCCACCTGGTGTTTGGGAAATCAGAACTGGCAAAGGCACTGGCTACATATTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568145" ref_strand="+" ref_description="SGN-E568145 [12382]">
      <seq>cttcgtcagattacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagtcctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctggttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaactcttcacacgcgaatcattgggcaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaaggaatcccaacaggcctattgctaggtttcatcttttccggtcccactgggtgtctgggaaatcagaactggcaaggcactgggtacatattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13641" stop="12467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13341" g_stop="13285" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12767" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="453" r_length="396" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E568145" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13341" e_stop="13285"/>
          <exon e_start="13158" e_stop="12767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCT-GTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAA-GAATCCCAACAGACCTATTGCTA-GTTTCATCTTTTCCGGTCCCACT-GGTGT-TGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTT</genome_strand>
        <mrna_strand>CTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGTCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACTCTTCACACGCGAATCATTGGGCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGGAATCCCAACAGGCCTATTGCTAGGTTTCATCTTTTCCGGTCCCACTGGGTGTCTGGGAAATCAGAACTGGC-AAGGCACTGGGTACATATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728673" ref_strand="+" ref_description="SGN-E728673 [LA18CC12]">
      <seq>gaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaagaatcccaacagacctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactggcaaaggcactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14323" stop="12480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14023" g_stop="13850" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="250" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="340" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12780" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="719" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E728673" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14023" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGG</genome_strand>
        <mrna_strand>GAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366588" ref_strand="+" ref_description="SGN-E366588 [cLPT-13-D3]">
      <seq>aaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagtcctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaagaatcccaacaggcctattgctagtttcatcttttccggtcccactggtgttgggaaatcagaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13660" stop="12492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13360" g_stop="13285" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12792" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="443" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E366588" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13360" e_stop="13285"/>
          <exon e_start="13158" e_stop="12792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGG</genome_strand>
        <mrna_strand>AAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGTCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAAGAATCCCAACAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591057" ref_strand="+" ref_description="SGN-E591057 [44761]">
      <seq>ctacagaggagatccaaccagttaaggtccatgaaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacaccgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagtcctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtgacagaagcagatattcagcacatcgtctcttcttggaccggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaactcttcacacgcgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14310" stop="12560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14010" g_stop="13850" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="237" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="327" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12860" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="626" r_length="299" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E591057" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14010" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTG-AACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAA</genome_strand>
        <mrna_strand>CTACAGAGGAGA-TCCAACCAGTTAAGGTCCATGAAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACCGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGTCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACCGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACTCTTCACACGCGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603026" ref_strand="+" ref_description="SGN-E603026 [56104]">
      <seq>cttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacggtggatgaatacagaaagcatattgagaaagatcctgcactagagaggagatccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttagaccgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagtcctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaactcttcacacgcgaattcttggccaggatgaagttgtcaaagccattagtcgcgctattcgacgtgcgcgagttgggctcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14612" stop="12557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14312" g_stop="14279" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="251" r_length="217" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="327" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="417" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="12862" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="714" r_length="297" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E603026" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14312" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTC</genome_strand>
        <mrna_strand>CTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACGGTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGA-TCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTAGACCGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGTCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACTCTTCACACGCGAATTCTTGGCCAGGATGAAGTTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268619" ref_strand="+" ref_description="SGN-E268619 [cLEI-13-H18]">
      <seq>attctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcacgagttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14250" stop="12563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13950" g_stop="13850" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="177" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="267" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12863" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="563" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E268619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13950" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCT</genome_strand>
        <mrna_strand>ATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409679" ref_strand="+" ref_description="SGN-E409679 [PPI-14-D12]">
      <seq>gcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaatggaagaacacttcacacacgaatcattggccaggatgaagctgtcaaagccattagtcgcgctattcgacgtgcgcgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14641" stop="12567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14341" g_stop="14279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="281" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="357" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="12867" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="737" r_length="290" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E409679" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14341" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTG</genome_strand>
        <mrna_strand>GCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCT-AAAATGGAAG-AACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGCGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597031" ref_strand="-" ref_description="SGN-E597031 [40526]">
      <seq>aaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggaccaggatgaagctgtcaaagccattagtcgcgctattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13647" stop="12579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13347" g_stop="13285" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13158" g_stop="12879" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="343" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E597031" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597031" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13347" e_stop="13285"/>
          <exon e_start="13158" e_stop="12879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGG-CCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGAC</genome_strand>
        <mrna_strand>AAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGAC-AAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGACCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415047" ref_strand="+" ref_description="SGN-E415047 [STM-20-L11]">
      <seq>actagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattggccaggatgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14311" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14011" g_stop="13850" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="238" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="328" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12907" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="580" r_length="252" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E415047" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14011" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCT</genome_strand>
        <mrna_strand>ACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250479" ref_strand="+" ref_description="SGN-E250479 [cLEG-18-M20]">
      <seq>atgctgcaaacatcttgaaacctgccctagctcgaggtgaacgacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14625" stop="12621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14325" g_stop="14279" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="265" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="341" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="12921" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="669" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E250479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14325" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTG</genome_strand>
        <mrna_strand>ATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACGACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265600" ref_strand="+" ref_description="SGN-E265600 [cLEI-14-E12]">
      <seq>tctgaaagggcttcgcgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacacttcacacacgaatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14248" stop="12621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13948" g_stop="13850" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="175" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="265" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12921" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="503" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E265600" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13948" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTG</genome_strand>
        <mrna_strand>TCTGAAAGGGCTTCGCGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739053" ref_strand="+" ref_description="SGN-E739053 [LC15DH05]">
      <seq>caataattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgaaaaggtctccactgacgaatctgaccgtctcctaaaaatggaagaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15348" stop="12639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="15003" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="263" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="481" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="557" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="647" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13158" g_stop="12939" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="867" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739053" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACAC</genome_strand>
        <mrna_strand>CAATAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAAAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466635" ref_strand="+" ref_description="SGN-E466635 [cPRO-25-I8]">
      <seq>ctggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgntacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttgagaaggtctccactgacgaatctgaccgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14349" stop="12659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14049" g_stop="13850" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="276" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="366" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="12959" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="566" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E466635" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14049" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCT</genome_strand>
        <mrna_strand>CTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGNTACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736596" ref_strand="+" ref_description="SGN-E736596 [LC06BF03]">
      <seq>caggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggactggtatccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15388" stop="12690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15088" g_stop="15003" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="302" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="520" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="596" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="686" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13158" g_stop="12990" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="855" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E736596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15088" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTG</genome_strand>
        <mrna_strand>CAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341891" ref_strand="+" ref_description="SGN-E341891 [cTOF-9-E3]">
      <seq>agagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggaactggtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14700" stop="12696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14400" g_stop="14279" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="340" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="416" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="506" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="12996" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="670" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E341891" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14400" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="12996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGG-ACTGGTATCC</genome_strand>
        <mrna_strand>AGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGAACTGGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471322" ref_strand="+" ref_description="SGN-E471322 [cSTB-23-J1]">
      <seq>gagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14232" stop="12702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13932" g_stop="13850" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="159" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="249" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="13002" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="406" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E471322" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13932" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTG</genome_strand>
        <mrna_strand>GAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474979" ref_strand="+" ref_description="SGN-E474979 [cSTB-38-J11]">
      <seq>actatagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgtgacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaacatttcgaaaaggctggggagttacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcacggctgaaagtgaggctgcagatacaggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14311" stop="12703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14011" g_stop="13850" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="238" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="328" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="13003" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="484" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E474979" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14011" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACT</genome_strand>
        <mrna_strand>ACTATAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTGACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAACATTTCGAAAAG..............................................................................................................................GCTGGGGAGTTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCACGGCTGAAAGTGAGGCTGCAGATACAGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204238" ref_strand="+" ref_description="SGN-E204238 [cLEC-13-L17]">
      <seq>ctggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctgtttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtgacagaagcagatattcagcacatcgtctcttcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14349" stop="12704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14049" g_stop="13850" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="276" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="366" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="13004" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="521" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E204238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14049" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGAC</genome_strand>
        <mrna_strand>CTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGTTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417356" ref_strand="+" ref_description="SGN-E417356 [STM-25-E14]">
      <seq>gtttgaggaaagggctaaaaaagctgatggaggaaattaaacagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagagcttcgtcagattacaaaggagaagaatgaagctgttcgcggtcaagatttcgaaaaggctggggagntacgtgatagagaaatggatcttaaggcacagatcacagccctcatagacaaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacagggtcctcttgtaacagaagcagatattcagcacatcgtctcttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14741" stop="12706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14441" g_stop="14279" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="382" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="458" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="548" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="13006" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="702" r_length="154" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E417356" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14441" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGGAAA-GGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACA-GGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGG</genome_strand>
        <mrna_strand>GTTTGAGGAAAGGGCTAAAAAAGCTGATGGAGGAAATTAAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAGNTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGGTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339156" ref_strand="+" ref_description="SGN-E339156 [cTOF-6-H13]">
      <seq>tgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaaatgaagctgttcgtggtcaagatttcgaaaaggctggggaaattacgtgatagaaaaatggatctgaaggcacagatcacagccctcatagacaaaacaaagaggtgagcaaggctgaaagtgaggctgcagatacaggtccacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15324" stop="12742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15024" g_stop="15003" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="238" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="456" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="532" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="623" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13158" g_stop="13042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="740" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E339156" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15024" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAG-AATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGG-AATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTG</genome_strand>
        <mrna_strand>TGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAAATTACGTGATAGAAAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGAC-AAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295878" ref_strand="+" ref_description="SGN-E295878 [cLET-27-K5]">
      <seq>gagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14646" stop="12789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14346" g_stop="14279" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="286" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="362" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="13089" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="522" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E295878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14346" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAG</genome_strand>
        <mrna_strand>GAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271541" ref_strand="+" ref_description="SGN-E271541 [cLEM-23-G2]">
      <seq>gaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatagacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14710" stop="12794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14410" g_stop="14279" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="350" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="426" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="516" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="13094" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="581" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E271541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14410" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAA</genome_strand>
        <mrna_strand>GAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316272" ref_strand="+" ref_description="SGN-E316272 [cTOA-23-D6]">
      <seq>tttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatctgaaggcacagatcacagccctcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14740" stop="12801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14440" g_stop="14279" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="380" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="456" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="546" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="13101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="604" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E316272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14440" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAG</genome_strand>
        <mrna_strand>TTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367427" ref_strand="+" ref_description="SGN-E367427 [cLPT-7-P9]">
      <seq>catcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctgtgttcgactcccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgatagagaaatggatcttaaggcacagatcacagtcctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14217" stop="12802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13917" g_stop="13850" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="141" r_length="73" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="231" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13158" g_stop="13102" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="288" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E367427" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13917" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATA</genome_strand>
        <mrna_strand>CATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCT-GTGTTCGAC-TC-CCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGAGAAATGGATCTTAAGGCACAGATCACAGTCCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301498" ref_strand="+" ref_description="SGN-E301498 [cLEW-23-I17]">
      <seq>gaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagaaggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtggtcaagatttcgaaaaggctggggaattacgtgataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14710" stop="12838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14410" g_stop="14279" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="350" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="426" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="516" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13158" g_stop="13138" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="537" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E301498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14410" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13285"/>
          <exon e_start="13158" e_stop="13138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGTACTGAGTTTGTCATGTACATCTAAAGAACCCCTCAAAAATGGTTGTTATATAGCCCAACTATTTTCTTATCAAGTATTATAATTAAAGAATTTTCTAATGACATGGTTTTGGATTAATGGACAGGCTGGGGAATTACGTGATAGA</genome_strand>
        <mrna_strand>GAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAAGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG..............................................................................................................................GCTGGGGAATTACGTGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248483" ref_strand="+" ref_description="SGN-E248483 [cLEF-59-J12]">
      <seq>tgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcngataacaaaggagaagaatgaagctgttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14762" stop="13002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14462" g_stop="14279" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="402" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="478" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13302" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="551" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E248483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14462" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTG</genome_strand>
        <mrna_strand>TGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCNGATAACAAAGGAGAAGAATGAAGCTGTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258071" ref_strand="+" ref_description="SGN-E258071 [cLEG-48-C24]">
      <seq>gaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaaggagaagaatgaagctgttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14671" stop="13002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14371" g_stop="14279" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="311" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="387" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13302" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="460" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E258071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14371" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTG</genome_strand>
        <mrna_strand>GAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739992" ref_strand="+" ref_description="SGN-E739992 [LC19CF04]">
      <seq>cccttattggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaaacaattgatttgattgatgaagctggttctcgtgttcgacttccccatgctcagctccccgaggaagcaaaagagctcgagaaagaacttcgtcagataacaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15476" stop="13022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15175" g_stop="15003" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="389" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="607" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="683" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13322" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="736" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739992" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15175" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGA</genome_strand>
        <mrna_strand>CCCTTATTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAACAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCCCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589100" ref_strand="+" ref_description="SGN-E589100 [42667]">
      <seq>tgctaagaacaacccttgtcttattggagaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaacggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaaacagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgagggaagcaaaagagctcgagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15418" stop="13044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15120" g_stop="15003" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="334" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="552" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="628" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13344" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="660" r_length="32" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E589100" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15120" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGA-GGAAGCAAAAGAGCTCGAGAAAG</genome_strand>
        <mrna_strand>TGCTAAGAACAACCCTTGTCTTATTGGAGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAACGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGGAAGCAAAAGAGCTCGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368958" ref_strand="+" ref_description="SGN-E368958 [TUS-25-J5]">
      <seq>tcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15438" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15138" g_stop="15003" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="352" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="570" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="646" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13346" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="675" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E368958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15138" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGAA</genome_strand>
        <mrna_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247943" ref_strand="+" ref_description="SGN-E247943 [cLEF-47-H20]">
      <seq>aacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15321" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15021" g_stop="15003" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="235" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="453" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="529" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13349" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="555" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E247943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15021" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCTCGA</genome_strand>
        <mrna_strand>AACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465513" ref_strand="+" ref_description="SGN-E465513 [cPRO-21-G18]">
      <seq>aaacagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctcagctccccgaggaagcaaaagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14704" stop="13052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14404" g_stop="14279" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="344" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="420" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13374" g_stop="13352" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="443" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E465513" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14404" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAAGCAAAAGAGCT</genome_strand>
        <mrna_strand>AAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAAGCAAAAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578936" ref_strand="+" ref_description="SGN-E578936 [86059]">
      <seq>atttgacaaaattggcggaagagggaaaattggacccctgttgttggaagacagccgcaacattgcaacgggtcactcaaatcttgcggtcggcggactaaagaacaaacccgttgtcttatctggagaaccatggtgttggcaagaacacgctattgctgagggttaggcacaaatgaagttgcaaacggtgatgtccctgaaacaattgaagggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagttcgaggaaaggctaaaagaatgctgatggaggaaattaaacagagtgatgaactaatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaataccgaaagcatatggagaaagatcctgtactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaagtatacagattctgaaagggcttcgtgagaggtatgagattcatcacaagcttcgttacaccgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgatagagcagttgatctgattgatgaaactggttctcgtgtccgagttcgccatgctcagctccccgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15581" stop="13159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15281" g_stop="15259" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="222" r_length="199" r_score="0.839"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.88"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="440" r_length="218" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="658" r_length="218" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="734" r_length="76" r_score="0.908"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13374" g_stop="13363" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="746" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E578936" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15281" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCC-GTTGTTGGAAGACAGCCGCAA-ATTG-AACGGGTCACTCAAATCTTG-GGTCGGCGGACT-AAGAAC-AACCC-TTGTCTTAT-TGGTGAACCA-GGTGTTGGCAA-AACA-GCTATTGCTGAGGGTTTGGCACAAA-GAA-TTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAA-AA-GCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCCCGAGGAA</genome_strand>
        <mrna_strand>ATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCTGTTGTTGGAAGACAGCCGCAACATTGCAACGGGTCACTCAAATCTTGCGGTCGGCGGACTAAAGAACAAACCCGTTGTCTTATCTGGAGAACCATGGTGTTGGCAAGAACACGCTATTGCTGAGGGTTAGGCACAAATGAAGTTGCAAACGGTGATGTCCCTGAAACAATTGAAGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTCGAGGAAAGGCTAAAAGAATGCTGATGGAGGAAATTAAACAGAGTGATGAACTAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACCGAAAGCATATGGAGAAAGATCCTGTACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAAGTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAGCTTCGTTACACCGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAGAGCAGTTGATCTGATTGATGAAACTGGTTCTCGTGTCCGAGTTCGCCATGCTCAG....................................................................................CTCCCCGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212872" ref_strand="+" ref_description="SGN-E212872 [cLEC-73-D21]">
      <seq>aaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcctgagaagtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatgaagctgggtctcgtgttcgacttcgccatgctcagctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15349" stop="13159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="15003" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="263" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="481" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="557" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13374" g_stop="13370" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="562" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E212872" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
          <exon e_start="13374" e_stop="13370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGGCATGAAATGCTCTCTTAGTCTCTCTTTTAATCTGTCATTGCCCTACTATTTGTTGAGTGACAATGCTCTGTTGTTGCCTCCAGCTCCC</genome_strand>
        <mrna_strand>AAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCCTGAGAAGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGGTCTCGTGTTCGACTTCGCCATGCTCAG....................................................................................CTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262657" ref_strand="+" ref_description="SGN-E262657 [cLEG-63-A3]">
      <seq>gaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctngaagggcttcgtgagaggtatgaaatttcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcattgattttgattgatgaagctggttctcgtgttcgacttcgccatgctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14671" stop="13159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14371" g_stop="14279" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="312" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13459" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="388" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E262657" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14371" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAA-TTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG</genome_strand>
        <mrna_strand>GAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTNGAAGGGCTTCGTGAGAGGTATGAAATTTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCATTGATTTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446012" ref_strand="+" ref_description="SGN-E446012 [cSTA-19-L13]">
      <seq>gtttgaggaaaggctaaaaaagctgatggaggaaattaaacagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacgaggccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgataaagcaattgatttgattgatgaagctggttctcgtgttcgacttcgccatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14741" stop="13160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14441" g_stop="14279" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="381" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13534" g_stop="13460" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E446012" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14441" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCA</genome_strand>
        <mrna_strand>GTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247696" ref_strand="+" ref_description="SGN-E247696 [cLEF-42-O21]">
      <seq>aagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacaccattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctacctacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgaccaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatttctgcctgacaaagcaattgatttgattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15348" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15048" g_stop="15003" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="263" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="482" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13534" g_stop="13494" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="523" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E247696" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15048" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
          <exon e_start="13534" e_stop="13494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACA-CATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTA-CTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGGTATCTAATCTCTACCATTTTCCTATGTCTTCTTGTACGTTTTTACTCTTTTCTCGTCCTGAATTGTTGATGCATTGGTACCTTGAAGAAATATGTTTGCTTTAAGACGGTAGACCTGAAGTTCAACTTATTTTATGATAGTTAAGTGTGATAATAGAAGTTGGTTTACTTTTGTTTATCAGCATCTAATTAGGTTTTTATGCTTATCTCTAGAAAAGATTGTCCTAGATTCCACGATATAGATTTTCGTATAAAGTTTTTTTTTCCTTGTTCTGCTAAGTGATACATCTTTTCACTTGCGTTTTCACATTTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATG</genome_strand>
        <mrna_strand>AAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACCATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACCTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACCAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG...........................................................................................................................................................................................................................................................................................................................TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330373" ref_strand="+" ref_description="SGN-E330373 [cTOD-4-G9]">
      <seq>gaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgaaggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttcgttacactgacgaagccttagtggctgctgctcagctctcataccagtacatcagtgaccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15414" stop="13541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15114" g_stop="15003" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="328" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13850" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="546" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E330373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15114" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG</genome_strand>
        <mrna_strand>GAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAAGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369963" ref_strand="+" ref_description="SGN-E369963 [TUS-26-J5]">
      <seq>tcaaatcttgggtcggcggactaagaacagcccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggagataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaacgggcttcgtgagaggtatgaaattcatcacagacttcggtacactgacgaagccttagtggctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15438" stop="13574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15138" g_stop="15003" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="352" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13874" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="546" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E369963" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15138" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGC</genome_strand>
        <mrna_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAGCCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAACGGGCTTCGTGAGAGGTATGAAATTCATCACAGACTTCGGTACACTGACGAAGCCTTAGTGGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365676" ref_strand="+" ref_description="SGN-E365676 [cLPT-8-E23]">
      <seq>gaattcggcacgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggagaggctaaaaaagctgatggaggaaattaaacagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgagattcatcacaaacttcgttacactgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14800" stop="13592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="239" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13892" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="415" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E365676" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGA</genome_strand>
        <mrna_strand>GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAGAGGCTAAAAAAGCTGATGGAGGAAATTAAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249090" ref_strand="+" ref_description="SGN-E249090 [cLEF-49-J21]">
      <seq>tcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaagtatgaaattcatcacaaacttcgttacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15438" stop="13596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15138" g_stop="15003" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="352" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13896" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="524" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E249090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15138" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTG</genome_strand>
        <mrna_strand>TCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAAGTATGAAATTCATCACAAACTTCGTTACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328568" ref_strand="+" ref_description="SGN-E328568 [cTOC-23-B21]">
      <seq>actggaggagtatggaacaaatttgataaaattggcggaattgggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15601" stop="13605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15301" g_stop="15259" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="229" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="445" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14067" g_stop="13905" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="608" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E328568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15301" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTC</genome_strand>
        <mrna_strand>ACTGGAGGAGTATGGAACAAATTTGATAAAATTGGCGGAATTG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208671" ref_strand="+" ref_description="SGN-E208671 [cLEC-39-F7]">
      <seq>taagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaagggcttcgtgagaggtatgaaattcatcacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15417" stop="13608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15117" g_stop="15003" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="331" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14067" g_stop="13908" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="491" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E208671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15117" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="13908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAAC</genome_strand>
        <mrna_strand>TAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312029" ref_strand="+" ref_description="SGN-E312029 [cTOA-16-P20]">
      <seq>aggaaaaagctgatggaggaaatgggggcatagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagagtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactagagaggagattccaaccagttaaggtccctgaacctactgttgatgaaactatacagattctgaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14725" stop="13639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14428" g_stop="14279" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14067" g_stop="13939" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E312029" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14428" e_stop="14279"/>
          <exon e_start="14067" e_stop="13939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAAGCTGATGGAGGAAAT-TAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGG</genome_strand>
        <mrna_strand>AGGAAAAAGCTGATGGAGGAAATGGGGGCATAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................AGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740700" ref_strand="+" ref_description="SGN-E740700 [LC22CB04]">
      <seq>ggttttgttgctgtagagatcccttttacccctcgtgccgagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16221" stop="13707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15921" g_stop="15840" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="198" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="321" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="507" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="723" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14067" g_stop="14007" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="784" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E740700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15921" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="14007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAG</genome_strand>
        <mrna_strand>GGTTTTGTTGCTGTAGAGATCCCTTTTACCCCTCGTGCCGAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331943" ref_strand="+" ref_description="SGN-E331943 [cTOD-16-E14]">
      <seq>aagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggtgaactacagtgtatcggagctactacactggatgaatacagaaagcatattgagaaagatcctgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16182" stop="13709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15882" g_stop="15840" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="159" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="282" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="468" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14494" g_stop="14279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="684" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14067" g_stop="14009" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="743" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E331943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15882" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14279"/>
          <exon e_start="14067" e_stop="14009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGGTAAGTTCCTCCTTCGCTTGTTCTTTCCTTTCTGTTCTTTCTAGAAATTAAAAATGAGAACTAAGAATATTTCTGTTAACAACTCAATGTTTTAGAAGATATATCATTGTTTTAACATGCATTTTACCGCCTCATAAGAAGGTTAAAAATGACTGCTCAGTTAAAGCAGGAGAAAAAACTTCTACATGTGTATTTACTTGGCTTCTTGCAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACT</genome_strand>
        <mrna_strand>AAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG...................................................................................................................................................................................................................TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244125" ref_strand="+" ref_description="SGN-E244125 [cLEE-1-M9](-)">
      <seq>ctaaattgaaatatgtcaaattatattttcagtgtctgtgttctcttgaatttttttatatataaattcttccgtgctacttgttctcttggcatatttctttttagtagattgatttgtcgatctatgcttataactaattgagcaaaaacgattagtatcccttgttgaacttaatttcttagctcaaactatcaaactgaagtgatttcaagtgagaaaggtccaccacctattcttgtgaatctaatccatctgaaactttgtcaaatgtttcgtgctatgatatagctacctttctcgttgttcctaagagtcgctttttttggtgataattaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctagctcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15133" stop="13987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14833" g_stop="14290" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E244125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14833" e_stop="14290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAG</genome_strand>
        <mrna_strand>CTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736637" ref_strand="+" ref_description="SGN-E736637 [LC06CC08]">
      <seq>gtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaacctgccctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15358" stop="13996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15058" g_stop="15003" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14494" g_stop="14296" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="255" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E736637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15058" e_stop="15003"/>
          <exon e_start="14494" e_stop="14296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAG</genome_strand>
        <mrna_strand>GTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247625" ref_strand="+" ref_description="SGN-E247625 [cLEF-42-H12]">
      <seq>tcggagcacttgctacttggattgctacgtgaaggtggaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaagtgcacacattgattggagctggagcagcagagggggccatcgatgctgcaaacatcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15901" stop="14006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15601" g_stop="15503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="222" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="408" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14494" g_stop="14306" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="597" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E247625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15601" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAA</genome_strand>
        <mrna_strand>TCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGGAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268768" ref_strand="+" ref_description="SGN-E268768 [cLEM-16-D8]">
      <seq>agtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatggaggaaattaagcagagtgatgaaataatactatttatcgatgaaatgcacacattgattggagctggagcaacagagggggccatcgatgctgcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15660" stop="14014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15360" g_stop="15259" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="288" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14494" g_stop="14314" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="469" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E268768" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15360" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACA</genome_strand>
        <mrna_strand>AGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAATGCACACATTGATTGGAGCTGGAGCAACAGAGGGGGCCATCGATGCTGCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735864" ref_strand="+" ref_description="SGN-E735864 [LC03BG06]">
      <seq>gttagacgacttggtcacaattttgttggcagtggggggatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggtgaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaatggtgatgtccctgaaacaattgaggggaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccgtggagagtttgaggaaaggctaaaaaagctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16374" stop="14112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16077" g_stop="15840" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="354" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="477" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="663" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14494" g_stop="14412" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="746" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E735864" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16077" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGA</genome_strand>
        <mrna_strand>GTTAGACGACTTGGTCACAATTTTGTTGGCAGTGGGGGGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586072" ref_strand="+" ref_description="SGN-E586072 [73497]">
      <seq>gctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgttacttggattgctacgtgaaggtgaaggtgtggctgcccgtgtccttgaaaacttgggtgctgaccccagcaacatccgtactcaggtgatccgaatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtacggaacaaatttgacaaaattggcggaagagggaaaattggacccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaagccttgtcttattggagaaccaggtgttggccaaaacagctattgctgagggtttggcacaaagaattgcaaacggtgatgtccctgaaaccaattgaagggaaagaaggtgataactcttgatatgggattgcttgttgctgggacaaaataccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16212" stop="14148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15912" g_stop="15840" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="189" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="312" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="502" r_length="190" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.88"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14494" g_stop="14448" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="549" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E586072" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15912" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGA-CCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGG-CAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAA-CAATTG-AGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCG</genome_strand>
        <mrna_strand>GCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGTTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTCCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGTACTCAG.........................................................................................................................GTGATCCGAATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTACGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAAGCCTTGTCTTATTGGAGAACCAGGTGTTGGCCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAACGGTGATGTCCCTGAAACCAATTGAAGGGAAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586101" ref_strand="+" ref_description="SGN-E586101 [73526]">
      <seq>aagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgttacttggattgctacgtgaaggtgaaggtgtggctgcccgtgtccttgaaaacttgggtgctgaccccaggcacatccgtactcaggtgatccgaatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactggaggagtacggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttggaagacagccgcaaattgaacgggtcactcaaatcttgggtcggcggactaagaacaacccttgtcttattggagaaccaggtgttggcaaaacagctattgctgagggtttggcacaaagaattgcaaacggtgatgtccctgaaacaattgaagggaagaaggtgataactcttgatatgggattgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16182" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15882" g_stop="15840" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="159" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="282" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15188" g_stop="15003" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="468" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14494" g_stop="14467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="496" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E586101" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15882" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15003"/>
          <exon e_start="14494" e_stop="14467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAGGTACGTCATGTGGATAGCTTGCAGAATGTGATGTTTACCTGTGCCCTTTCTTCTCCCATTTGTTGTATCATATGGTGAACCCAGAAGCTGAGCAGGGTTATGAGGTGCAGTCTAGTGGTATTTTCGATTCACAAGGATTGGGTTCAAATGAATGTGCATTCTATCTCCACTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTG</genome_strand>
        <mrna_strand>AAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGTTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTCCTTGAAAACTTGGGTGCTGACCCCAGGCACATCCGTACTCAG.........................................................................................................................GTGATCCGAATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTACGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGAGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAACGGTGATGTCCCTGAAACAATTGAAGGGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACTCTTGATATGGGATTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738232" ref_strand="+" ref_description="SGN-E738232 [LC12DE04]">
      <seq>cttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgngtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccnacactggaggagtatggaacaaatttgacaaaattggcggaagagggaaaattggaccccgttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19142" stop="14866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18842" g_stop="18792" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="623" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="739" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15259" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="862" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15188" g_stop="15166" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="885" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E738232" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18842" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15259"/>
          <exon e_start="15188" e_stop="15166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGTAATCTAAAAAACTATATTTGTGATGATATGTGAACAGTTATGAATAATTGTCCATTTTTGGTTTGTAGGGAAAATTGGACCCCGTTGTTGG</genome_strand>
        <mrna_strand>CTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGNGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCNACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG......................................................................GGAAAATTGGACCCCGTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739808" ref_strand="+" ref_description="SGN-E739808 [LC18DH09]">
      <seq>ccttaatcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaagtggaacttctggccaaaaaatgccaacactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19176" stop="14997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18876" g_stop="18792" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="657" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="773" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15297" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="858" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739808" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18876" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGG</genome_strand>
        <mrna_strand>CCTTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAAGTGGAACTTCTGGCCAAAAAATGCCAACACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738557" ref_strand="+" ref_description="SGN-E738557 [LC14AE05]">
      <seq>cctaatcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgacctcagcaacatccgcactcaagtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19175" stop="14998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18875" g_stop="18792" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="656" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="772" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15298" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="856" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E738557" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18875" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTG</genome_strand>
        <mrna_strand>CCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCTCAGCAACATCCGCACTCAA.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738722" ref_strand="+" ref_description="SGN-E738722 [LC14DA08]">
      <seq>ctaatcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaagtggaacttctggccaaaaaatgccaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19174" stop="14999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18874" g_stop="18792" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="655" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="771" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15299" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="854" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E738722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18874" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACT</genome_strand>
        <mrna_strand>CTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAAGTGGAACTTCTGGCCAAAAAATGCCAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738597" ref_strand="+" ref_description="SGN-E738597 [LC14BA12]">
      <seq>atcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggccaaaaaatgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19171" stop="15003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18871" g_stop="18792" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="652" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="768" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15303" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="847" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E738597" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18871" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAA</genome_strand>
        <mrna_strand>ATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738209" ref_strand="+" ref_description="SGN-E738209 [LC12DB06]">
      <seq>atcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaagtgatccggatggttggtgagagtaatgaggctgttggtgctagcgttggaggtggaacttctggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19171" stop="15015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18871" g_stop="18792" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="652" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="768" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15315" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="835" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E738209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18871" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCC</genome_strand>
        <mrna_strand>ATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAA.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737032" ref_strand="+" ref_description="SGN-E737032 [LC08BA03]">
      <seq>ccctaatcccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgagagtaatgaggctgttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19176" stop="15040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18876" g_stop="18792" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="657" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="773" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15340" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="815" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E737032" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18876" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCT</genome_strand>
        <mrna_strand>CCCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736881" ref_strand="+" ref_description="SGN-E736881 [LC07CF10]">
      <seq>cttccccttttccatctatattcttcaacaatctcccagattcttcagggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaggtgatccggatggttggtgaaagtaatgaagctgttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19148" stop="15040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18848" g_stop="18792" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="629" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="745" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15340" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="787" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E736881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18848" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCT</genome_strand>
        <mrna_strand>CTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG.........................................................................................................................GTGATCCGGATGGTTGGTGAAAGTAATGAAGCTGTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739162" ref_strand="+" ref_description="SGN-E739162 [LC16BE06]">
      <seq>ccctttttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgaccccagcaacatccgcactcaagtgatccggatggttggtgagagtaatgaggctgttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19169" stop="15041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18869" g_stop="18792" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="650" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15503" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="766" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15381" g_stop="15341" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="807" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18869" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15503"/>
          <exon e_start="15381" e_stop="15341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGCAAGTAGTAGATCTCACATGCTTCCTCTGGGTAGTCTAATATTGTGCTTTTGTGGGAAGTTGGATTTTTTGGTTTCATCATGACCAGTGTTCATTGGTTTTATTCTTCTTCTAAAAATAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGC</genome_strand>
        <mrna_strand>CCCTTTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAA.........................................................................................................................GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739233" ref_strand="+" ref_description="SGN-E739233 [LC16CE04]">
      <seq>ccttttttcgtctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttcaaggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaacttgggtgctgacccccacaacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19169" stop="15211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18869" g_stop="18792" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="650" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15511" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="758" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739233" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18869" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCC</genome_strand>
        <mrna_strand>CCTTTTTTCGTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAAGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCCACAACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737686" ref_strand="+" ref_description="SGN-E737686 [LC10DD11]">
      <seq>attccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaagtgtggctgcccgtgttcttgaaaacttgggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19171" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18871" g_stop="18792" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="652" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15528" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="743" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E737686" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18871" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGC</genome_strand>
        <mrna_strand>ATTCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAAGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740015" ref_strand="+" ref_description="SGN-E740015 [LC19CH11]">
      <seq>ccattttcctctaaacccatcttccccttttccatctatattcttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgttcttgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19168" stop="15236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18868" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="649" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15536" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="732" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E740015" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18868" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAAC</genome_strand>
        <mrna_strand>CCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484664" ref_strand="+" ref_description="SGN-E484664 [cSTE-14-C12]">
      <seq>tattcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcatcagttgctggtgaaaggacgaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggacaaactctccaatccaaagtagctgctgcaacttatgtcagacgaccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggttcgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgctacgtgaaggtgaaggtgtggctgcccgtgtccttgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16714" stop="15236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="579" r_length="572" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15618" g_stop="15536" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="662" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E484664" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAAC</genome_strand>
        <mrna_strand>GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCATCAGTTGCTGGTGAAAGGACGACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGACAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGACCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTCGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTCCTTGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739416" ref_strand="+" ref_description="SGN-E739416 [LC17BE04]">
      <seq>cccctaagggctctaaacccatcttccccttttccatctatatccttcaacaatctcccagattcttctgggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctctggaggaagcccgccagctagggcataactatattggttcggagcacttgctacttggattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19160" stop="15275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18870" g_stop="18792" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15840" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="651" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15618" g_stop="15575" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="695" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E739416" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18870" e_stop="18792"/>
          <exon e_start="16411" e_stop="15840"/>
          <exon e_start="15618" e_stop="15575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGTATCCTTTTTTGATTGTCTGTATTTGTTGTATTACCTTTGGGACATGTCTAAAAGTGGTTCTCCGGTTGAGTCTTATTCTCATGTTGCTTCGTTGACACCTTTGGTTTTCTCTAAAATTCATTGATTTTCTTTCTCTTTGCTTGCCTTTCTGGTCTTCTACATGCACCAGCATGATTATTTGTCTAAATATTTATTCCATTTATAAACTGGTTGGTTCAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTA</genome_strand>
        <mrna_strand>CCCCTAAGGGCTCTAAACCCATCTTCCCCTTTTCCATCTATATCCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG.............................................................................................................................................................................................................................GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580960" ref_strand="+" ref_description="SGN-E580960 [6203]">
      <seq>atctggacaaactctccaatccaaagtagctgctgcaacttatgtcagacgaccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggttcgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaactctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16516" stop="15560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16216" g_stop="15860" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E580960" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16216" e_stop="15860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCT</genome_strand>
        <mrna_strand>ATCTGGACAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGACCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTCGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302362" ref_strand="+" ref_description="SGN-E302362 [cLEW-27-I4]">
      <seq>tccccttttccatctatattcttcaacaatctcccagattcttcagggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagataattggaaggggtagtgggtttgttgctgttgagatcccttttacccctcgtgccaagcgtgttctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19146" stop="15567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18846" g_stop="18792" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15867" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="600" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E302362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18846" e_stop="18792"/>
          <exon e_start="16411" e_stop="15867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAAC</genome_strand>
        <mrna_strand>TCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542991" ref_strand="+" ref_description="SGN-E542991 [TUS-64-J6]">
      <seq>ttccccttttccatctatattcttcaacaatctcccagattcttcagggacttcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcgtcagttgctggtgaaaggacaaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggccaaactctccaatccaaagtagctgctgcaacttatgtcagacggccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgcttgcacaagaagaggccagacgacttggtcacaattttgttggcactgagcagatcttgttgggtctaattggtgagggaactggtattgctgccaaggttcttaaatcgatggggatcaatttgaaagatgctcgtgtggaagtggaaaagaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19147" stop="15632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18847" g_stop="18792" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16411" g_stop="15932" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="535" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E542991" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18847" e_stop="18792"/>
          <exon e_start="16411" e_stop="15932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAGGTTGTCTTTCTTTTTACCTAATCTTTTATGGCTGATTTGTTCATATCTTATAGTTTTCATATTTGGGTTTCTCTTTATTGTTTCAAATTTTACCTTTTTTTTATTGAAATTCTTGCTGACTGCATACGCAAAAGATAAGCTAATTTTCTAATTCAGTGGTAAAGTTTGCAACTTTTTAGCTAATTTTCTTGTTTTTTCAGTTGCTTCGAGTCACTTGTGGTATTACACTGAGTGGGTGTGTTGTTATTTTGTTAGTTGAGTTGCTTTGAGCTGTTTCTTGAGCAAATTTCTTGTTTTCGATATTTCTGTAAATCAAACTTAAGGATAAGGTAAGATTTGAGAATTTGAAAAATCTTATTTTGTGTCTTACAAGACAATTTTCTTTATCAAGGCTAATTTTTTTTTAGTAGTTTTAGAATGGATGGGACCAAATAAAGTGGGGCTAATATAGAGGATTCTTGTAGGTTGTAGCCAAAATTAGTTTGGGACTGAAGCATAGTTGATTGGTAGATGTGTCTTCAGTTTATACTAACTGGTGTTTGTTTCATTGTTTGAAGAGCTTTGCTTGAACATGTTTTGAGTATTGGAATGAGATGGGTTTAAACTGGAGTGAAATGGATAGTGAGGATTTGTATAGCTAACCAAAACTAGCTGGGGATTGAGGTTTAGGTGTTGTAGTACTTATGGTGGGATTCTTGGCTCGTTTATAAAATGTCTATCTTCATAGGGATATGAAGTAGCTCAACCCTTTCACAACTCTTTTGAGCAGTTCAAATGGTTGTGGGTACTTGCTACGAATTTAGCTCACGGACTCAACCCTTCACCAAATACTCAAAGTATTCAATTTAGTTGGTATTTAGGATCACCCGTGTAACTGGGACTATCTTGAGGGAGTGGATGTTTCTCTTGCCCTTTGGTCTTAATCTTTTTTGTTGAGACGAAGATCCTTTCCAGTTGGTACGAGATCATGGGAATGTCAATTTCATTTTGGTTCAGACTTTATATTTTGTTGTTATTGTTGTTGATTGTGTAGATTTTCTAGAGAATCATAATATATATCTTGTATGTGGAATGTTCTGCTCATATCTATATAGGAATATCTGTCTGCCAACCAAATTCTCTAATTTCACCCAAATTCCCCATATTTTTCATGTTTGTATCCCTAACATCGTTTGTCGGCAATTTATTATAATGCATCAATATTGAACAAATTGAATAGACTTCAATTGCATCCACATGGATTTAACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAGACCAAACCTCCCATTCTAATGTGTTGCAACAAACTATTAGGGGAGTTTTAAGGAAGAGAAAAATGGGGGATAATGCTACACAATGCTAACCTATTATAATCATCTATTTAGTTTGCAAACCCCACATATCTCTGTGTGTATTGTCCTATTTGTTCAATCTATTCATGAAACCTTGGCTACTCAATCCTGGATTGCGCACGTACTACTCAGCAGTTGCGTAGTGTTTCAGTTCTTATATCTTGGAGGGTAGACTGAATTTGGTTTATGTCATTGAATCATGTTTCACACAGATGGTTACATATTTTATTACATAGAATCTATATGTCATGCATCGACTCCTGTCGAGTATGGATACTTCCTACTTCTTCTTGGGAACTCTCTGATTGAGTTATCTTTCTGCTAATGGACTGTGCCTCACTATTTTTATCTTCCTCTGGATTGGAAAATATGGACATTCACTTGTTATCAATTTTTGAATTAATAATTTGTTGATATGTTGGCTGATTGATGTGTCATTGACTTCATATACTGTTATGGGTTTGTCATGTGGAAGATTTGATATTTTTCGATTATCTAAGGAGAGCTTTTTTGATTATTTTCTTATCCTGGGCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGG</genome_strand>
        <mrna_strand>TTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGA-AATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426989" ref_strand="+" ref_description="SGN-E426989 [STM-47-H3]">
      <seq>tattcaggtccatcatggctagagctctagttcagtcaacaagcatcccatcatcagttgctggtgaaaggacgaccaaattcaatggatctgggaaaacaaaaagagctgttacaatgctatgcaatgcacaatcatcttcacttacactgagggattttacaggattgcgaggatgcaatgcaatagatacactagttagatctggacaaactctccaatccaaagtagctgctgcaacttatgtcagacgaccacgaggttgccgatttgtaccaaaagcaatgtttgagcgcttcacagagaaggcgataaaagtcattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16714" stop="15791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16411" g_stop="16091" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="328" r_length="321" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E426989" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16411" e_stop="16091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCT</genome_strand>
        <mrna_strand>GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCATCAGTTGCTGGTGAAAGGACGACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGACAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGACCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244124" ref_strand="+" ref_description="SGN-E244124 [cLEE-1-M9]">
      <seq>actaaaccaaaagagaacaattggatcaagcttctgtagcccaaagttgtgtcctttcacttcttgtctactcctcatactgtctcttccaaattcaacagttgccactgtcgatttttcagcagtaaatttaccttgctcaatatcaactccccatagcccacccaaacttctcttcatttttataataatgacgttgcatgtttcatacctcgcctaggaatgtgtctactgaatcctgtcatttgctacatcatatcttgttcttgttcttcactctttttccttttctttcctgtactctcgatcgtgtagttaggattttgtactgaaaccgttgggttatcagttttacagacctttaagcagtctctctagggtttactaagagctggaaatttgaataatctgatcaaaattgctgaggttcttttaatccttctaaagatctctgtagcagagtggtgaaagcggaacaggggggaatactcggtacaaatggtgttgtgttcaattgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17846" stop="16725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17546" g_stop="17025" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E244124" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17546" e_stop="17025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAG</genome_strand>
        <mrna_strand>ACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTGTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGATCGTGTAGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722848" ref_strand="+" ref_description="SGN-E722848 [FC18CB02]">
      <seq>ggctctccactgcatactattaatttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcaaacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctannaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="7453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="556" r_length="87" r_score="0.897"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56784" i_stop="55687" i_length="1098">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55686" g_stop="55663" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="579" r_length="23" r_score="0.583"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55662" i_stop="55151" i_length="512">
            <donor d_prob="0.205" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55150" g_stop="55113" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="613" r_length="34" r_score="0.632"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55112" i_stop="55040" i_length="73">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55039" g_stop="54974" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="681" r_length="68" r_score="0.818"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54973" i_stop="51686" i_length="3288">
            <donor d_prob="0.000" d_score="0.79"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51685" g_stop="51589" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="778" r_length="97" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E722848" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
          <exon e_start="55686" e_stop="55663"/>
          <exon e_start="55150" e_stop="55113"/>
          <exon e_start="55039" e_stop="54974"/>
          <exon e_start="51685" e_stop="51589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGCTGTTTTCTAGCTTTACCAACAGGATTGCTAAGCAACGAATCAAACAAGATATTGAGTAATTACACAAGTCATGTTTAACTGATAAGTTTACAAATTGAAGACTGTTATTGGTTTAGGGTTCAAAATCTTGAAAAGGGTGTAAAACCTCTTCCCTAGTGGGATTATCTAGAGCGCGAACCCCATTGCTTTCAATCACCCTCCAAATCAGGAGGCACCATCAATCTTATTATGTCAATTTTGATCCTGATCGAATAGACTTGATGTAGTGTTGTACTAACAACTTGAAGTCGTGCAACAATAAGACATTTTGTTTTCATTTTTTTTAGTTAAAAGCATCCCATAATATAGCAATAGTGCCACCATGCCTGCAGCTGTGGAGTGGAGTCCGCCATCCCTTGAAAACACCTTCCAGATGGGAGGTTTAGAGTGAATATTATTAGTAAAGATACACATATAAAGTGCATATATACTATAACTTCAAAAGAAAAAATAGATCCAAAATATATTATTTATCAATCTCAAGTGTTGCGAAGTAGGTTATTTTCTCTAGGTATAGAAAATGCAACGTAGTAAGAAATTGAGGATTGATGTACTAAATCTCACTTAGCTGATTCCATTAATAACTTGTAGTTATAGTACATTAAAATATACTACTTGTAAAACTTCTTATTAGCCAGGGATTCGAGTTATGCATTTCTTTGTTCAAAACTCTTGGTACCTTATAAATCCTACCTTGAGAAGTAGAAATGTTGTTTTTGATTCTTTCACATTGTTTTTTAGTTGAAATTGTAGAAGCTTACAAAATGATTTTTTAGATTTATGTGCTTGTTAACGCCTTGTAACGACAAGTTACATAAAACTAGTATAGTAGTTTAGGCTCCCATACTGACAATGGCACTGGAAGCAATTTTTTTTCTGCTTTGTAAAACTGCTTGATTTCACTTTCGTTCTATGGTCTAACTCAGGGGTGATTTGACAGTGTTAAAAAAAAGACATGTGCATTAGGCCTTCAAATTTAAGGGGCCTCATTTTTAATAATAATAGGTTATAAGTTATTAATTTATAACAAATATTGAATACTATTTATAGAAAAAGTAAACTTTTCATGAAAAATGAAGGAATTATAGAAGAAATTTGACATATTTGAAGTACTATATCTCATGAAAAATAATTTAAAAATAAGAATGATTATATTATCAATTGAAAACTAGAAGAAATCAATTATATAAAGTTATTGATGATCCAAGCTTAAGGTCCCATTTAATTTTTGCTTTAGGCCACTAATACGGTTAAGCTGCTCAAGAAGGAGATCATGTTATTATTGGATAGTGTATGTTAGGACCTTATTTTGATTTATCTATAGTAACTTTTCATCAGTTGTTGTTATTGTACGTGATAAAATTTTGTACTTTGCATATCTTTATCCAAAATTAGGATGTTTAATGTCTTGAAGGTGATTTTAATCGGCTTTGGTGATGGTGGGACTTTTTCTTTTTAACCCAAATATGAGCTTGAGTGCTTCTATTTTAGGAGGTAAGACTTTCATTGCTTTTCTTGAATTCTAGTCTTCATAGATATTCC--TCTGAGCTTCAAATTTTAAAACTTAATGCTACAAACAAATTTTCTTTACTCGTCTTATAAGATGTTTGACGATTGAACCTTTTAAATTTCTTAATTTTTCTTTTTGGTGATTTAATCTAATGATACATTGCCATTTGCCACAATGAATACTTAAATATCATCAAATTCTCTTTGTCTTGAAAATCGTGAGAGAATATATATTGTTTGCATATGTAATGGTAAAAAATTATGTATATTATAAGTTCTCTATAATTTTGTTCCCATACGTATGAGATCTATGAAAAACATAAAAGACAATATTTGTGAAGTTACTTATACCAACGATCCAAAACCTAAATAATAAATATGGTAGGATAGTTACTAACTATTGTACACTAGCTAATTCACAATGAAGTTTTGATAGGAAATGTGTATAAAGAGGGCAACACATGTGAGAAAATAATTATATCAACTATAGTTTAGAATCTGTTTCAATAAAGTGTCTTAACAATCACATCTATAGGTTAATCGAAGTTATAATTATTTATAAATCTATTTTAATTTTTTGTATATTTCTTATAAGAACTTTTTTTCATGTAAGAAGTACGAATAAAACTATTTACTCGAGATTGTTAAATTAAACAATATATGTAAAGCTTAAACAAAAAGCCGTCTTAGCTCAGTGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATCCCCACAGACGGCGCTACTTATTTTTTTTCTCATTCAACAAGTTTATTTTGCATAATTTTTGTTTTAATATCTTTTTCATTCAACAAATTTATTTTGCATAATTTTTGTTCTACTTTTTTTCTCTACATTTCCGTCTTGTCATCTTCTATTTTCCCTTCCCTATTATATAATTTATTCTTAAAATGCAAAAAATTAATTAGACTAACTTTGTATTCGAATTTGTGGCCAATTTCTACTTTTATCTGTGAAATAATAAGATACTTATTACTTCATTAGATCCTTAGGATTTGCAATACTTATGATTTTTTCCATTAGATCATAAATTTGTCAAAATTTTAGTAAAAATCTTACATTGATCAAGTAACATAAATAAAATCATTGTTTCAGCTTTCAAATATGCCAAACAACTTAGAAGGACAAGCATATTTATTAGCTTGGATTGTCAAAGGTTGAGTCAAGATTTGAAAAGTGACTCAAAATTTAGCATGAGTCACTTGCTCAACCAAATGATCGATCTGGGCTTTAGGAACCTTGAGCTCCACATCATTTGCCACATTCCTACTCACATAAGCTCTTCGAAGAGCCATATCCTAAAAATACAGGACAAGAGTTAGGAGAGAGACCTGAAATGAACTCTATGATACGACTTTAGAGTAGTGAAAGAAGTGAAGCTTCCTTATTTCTTTGTAGCCTTCTATTCATAAATGTGGCATATAATATAAGTTCACGTGCTTCACATTTATGAACAATATTCTAATCAATGCGGTTTTTCAGGCCTAAGACCTTTTCTAAAACTTTTTGCTCTGAATATCAAGTTTCTTACGATTCAAAGTATACCCTAGACTTGACATGACATATAGGACCTTGAGAGACACTATACAAGTCACTTGTCATGCATACAACACAATAGAATATAGCATAAGAGAGTCAATAAAAGTATCATATATGCCGAAATACTAAAAATTTGTCTTCATAAGTAAATCTAAACCAAAATAAGAATAGTTGGGATGTAACTCATATACCACGTACAAAGTCTCAAAGGAAAACAACAAAAATCAATCAAGTTTTCATGTCTTTGCCCTCGCCCTCTGAGTATGAGAACTGAGCAATCCAATAGTAGTAAAAGAGAGATCCAAGCTATCCACAAGCAGGAGACAAGAAGCGTCGAACCCTATATTTTAAATAATATAGAAACAAGTATGCATTTGTACATGAAATGTAACAAATATGGAGAAATGCATAAGAACATAAACATGATCATAATGAGGACTATAACATGATATGCATGACCAGGCTAAAACATAATAAGGAGCCTTTAAAGATGGCTAACTAGAAAAAAGACATCTTCCCTGCTCATCAACTTCACGCCGCCGTTCGTTTTCTACCGAGGTCGGGGTTCTTTTGAAGACAAATCCATCATTGAAGGGCTAGAGGGCGGATCGCTCACTCAACAATTTCTGCTTCTCCAAATGGGAGCCTTTACTAGTAAGGGCGCGTGGAACCGGGGAGGCGGATGGGACTCTATTTAAAGGCTTCAGGTCGAGCCCCCTCCCTTCAAGAAATTGTAAATCATGAACAAGGTTACTTTCATAAAAGCCTTTGAAAGTAACTTAATTTTTTTAAAAAAATCTTTACCATTAATCGACATAGACCATGTGAGCTATAACATGGAATTCGATGTCTTAATCCCTCACCAAAGAGAGATGTCCTATTTGTCAAGGTAAGAACCATAAACTTCTAGTTTAGGTGGATCCACTAACTTGGTCACTTAAGAAAATTCTATGAGAGCACGTAGTTAAGAACAAAGAAATTGCTACTAGATACTCGATCTCTACTAATGGGAAGACATCCATCCCAAAGTTCTCTCGGTGCTAAGTAAAATTTTAACAAAATTAATTAAAAACATATTCATACCTTTATACTTGGAAAAACACAATTAAACCACCAATCCAATCATAAGTTATCATATATTAGCTCCTTTAAGTCATGATTCATATATATGTGAGACACCCTTTCACAACCATGATTTAATTATATGTGAGAAAAATTTTCACAATTCATTGATACTTATCTCAAAGATCTTTTCATAAAATATGCATAGCTTTTACAAATCATATTCATAAGTTCATAAGCTTTCTTTATAAATCCATCATCATAATCAAGTATCAATATGAAATCAACTGAAAACATATATTTGAATCAAATCGTGCATAAAAAAAATTGAAAATAATAAATTGAATCATAATTAAAAAAGGACCTATGAAGATTGACATAAATCCTAATTTAATTGGAGATTGAAGAACTTTTGGGACCTAGTGGATGAGTGGAATCCATTGGTGAATGCTCACATACCTCAATAATCAAAGACCTTAAAATCAAGGGAGATTGGAGAACTTAAACCCTAACGTTCTTCCTTGAGTTTGAGAGAGAATGAGAGGGAATGAACTTATATGGATTTTACGAATTTCAGGGAATTGGAGAATTTGGACGGCGTAAGGGTTTAAGTGACCGTATTGATTAAGGGATTATTACTATTTTTGTTTTCAGAGTCGCCACTGGGAATTGAGTTATGGTGTTTAAAAACACCTTTTCTTTTTAATCCCTAACCAAAAAGAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAAACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA-CTTGATTGTTTCTATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTT-ACATCTAGAA-ATGATGTCAA--GGCATAT.........................................................................TTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTAACAAGCTTTTCTTTCCTANNAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544656" ref_strand="+" ref_description="SGN-E544656 [TUS-67-B16](-)">
      <seq>gtttttttaagctctaagaagaccggaaagggaaagagcccaggaaagggaggcaatcgatattttaggagtatcggtttaggattcaagactccttgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtttcagagatatgagaagagacactccaatattccagctcacatatccccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccacccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59343" stop="54701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59136" g_stop="59126" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="112" r_length="101" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="257" r_length="145" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="347" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="434" r_length="87" r_score="0.885"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56784" i_stop="55687" i_length="1098">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55686" g_stop="55663" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="457" r_length="23" r_score="0.583"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55662" i_stop="55151" i_length="512">
            <donor d_prob="0.205" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55150" g_stop="55113" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="491" r_length="34" r_score="0.632"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55112" i_stop="55040" i_length="73">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55039" g_stop="54973" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="560" r_length="69" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="622"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E544656" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59136" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
          <exon e_start="55686" e_stop="55663"/>
          <exon e_start="55150" e_stop="55113"/>
          <exon e_start="55039" e_stop="54973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGCTGTTTTCTAGCTTTACCAACAGGATTGCTAAGCAACGAATCAAACAAGATATTGAGTAATTACACAAGTCATGTTTAACTGATAAGTTTACAAATTGAAGACTGTTATTGGTTTAGGGTTCAAAATCTTGAAAAGGGTGTAAAACCTCTTCCCTAGTGGGATTATCTAGAGCGCGAACCCCATTGCTTTCAATCACCCTCCAAATCAGGAGGCACCATCAATCTTATTATGTCAATTTTGATCCTGATCGAATAGACTTGATGTAGTGTTGTACTAACAACTTGAAGTCGTGCAACAATAAGACATTTTGTTTTCATTTTTTTTAGTTAAAAGCATCCCATAATATAGCAATAGTGCCACCATGCCTGCAGCTGTGGAGTGGAGTCCGCCATCCCTTGAAAACACCTTCCAGATGGGAGGTTTAGAGTGAATATTATTAGTAAAGATACACATATAAAGTGCATATATACTATAACTTCAAAAGAAAAAATAGATCCAAAATATATTATTTATCAATCTCAAGTGTTGCGAAGTAGGTTATTTTCTCTAGGTATAGAAAATGCAACGTAGTAAGAAATTGAGGATTGATGTACTAAATCTCACTTAGCTGATTCCATTAATAACTTGTAGTTATAGTACATTAAAATATACTACTTGTAAAACTTCTTATTAGCCAGGGATTCGAGTTATGCATTTCTTTGTTCAAAACTCTTGGTACCTTATAAATCCTACCTTGAGAAGTAGAAATGTTGTTTTTGATTCTTTCACATTGTTTTTTAGTTGAAATTGTAGAAGCTTACAAAATGATTTTTTAGATTTATGTGCTTGTTAACGCCTTGTAACGACAAGTTACATAAAACTAGTATAGTAGTTTAGGCTCCCATACTGACAATGGCACTGGAAGCAATTTTTTTTCTGCTTTGTAAAACTGCTTGATTTCACTTTCGTTCTATGGTCTAACTCAGGGGTGATTTGACAGTGTTAAAAAAAAGACATGTGCATTAGGCCTTCAAATTTAAGGGGCCTCATTTTTAATAATAATAGGTTATAAGTTATTAATTTATAACAAATATTGAATACTATTTATAGAAAAAGTAAACTTTTCATGAAAAATGAAGGAATTATAGAAGAAATTTGACATATTTGAAGTACTATATCTCATGAAAAATAATTTAAAAATAAGAATGATTATATTATCAATTGAAAACTAGAAGAAATCAATTATATAAAGTTATTGATGATCCAAGCTTAAGGTCCCATTTAATTTTTGCTTTAGGCCACTAATACGGTTAAGCTGCTCAAGAAGGAGATCATGTTATTATTGGATAGTGTATGTTAGGACCTTATTTTGATTTATCTATAGTAACTTTTCATCAGTTGTTGTTATTGTACGTGATAAAATTTTGTACTTTGCATATCTTTATCCAAAATTAGGATGTTTAATGTCTTGAAGGTGATTTTAATCGGCTTTGGTGATGGTGGGACTTTTTCTTTTTAACCCAAATATGAGCTTGAGTGCTTCTATTTTAGGAGGTAAGACTTTCATTGCTTTTCTTGAATTCTAGTCTTCATAGATATTCC--TCTGAGCTTCAAATTTTAAAACTTAATGCTA</genome_strand>
        <mrna_strand>GTTTTTTTAAG....................................................................................CTCTAAGAAGACCGGAAAGGGAAAGAGCCCAGGAAAGGGAGGCAATCGATATTTTAGGAGTATCGGTTTAGGATTCAAGACTCCTTGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTTTCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCCCCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCACCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA-CTTGATTGTTTCTATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTT-ACATCTAGAA-ATGATGTCAA--GGCATAT.........................................................................TTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351430" ref_strand="+" ref_description="SGN-E351430 [cTOS-12-L1]">
      <seq>atgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57548" stop="54701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57248" g_stop="57123" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="216" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56784" i_stop="55687" i_length="1098">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55686" g_stop="55663" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="326" r_length="23" r_score="0.583"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55662" i_stop="55151" i_length="512">
            <donor d_prob="0.205" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55150" g_stop="55113" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="360" r_length="34" r_score="0.632"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55112" i_stop="55040" i_length="73">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55039" g_stop="54973" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="429" r_length="69" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E351430" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57248" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
          <exon e_start="55686" e_stop="55663"/>
          <exon e_start="55150" e_stop="55113"/>
          <exon e_start="55039" e_stop="54973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGCTGTTTTCTAGCTTTACCAACAGGATTGCTAAGCAACGAATCAAACAAGATATTGAGTAATTACACAAGTCATGTTTAACTGATAAGTTTACAAATTGAAGACTGTTATTGGTTTAGGGTTCAAAATCTTGAAAAGGGTGTAAAACCTCTTCCCTAGTGGGATTATCTAGAGCGCGAACCCCATTGCTTTCAATCACCCTCCAAATCAGGAGGCACCATCAATCTTATTATGTCAATTTTGATCCTGATCGAATAGACTTGATGTAGTGTTGTACTAACAACTTGAAGTCGTGCAACAATAAGACATTTTGTTTTCATTTTTTTTAGTTAAAAGCATCCCATAATATAGCAATAGTGCCACCATGCCTGCAGCTGTGGAGTGGAGTCCGCCATCCCTTGAAAACACCTTCCAGATGGGAGGTTTAGAGTGAATATTATTAGTAAAGATACACATATAAAGTGCATATATACTATAACTTCAAAAGAAAAAATAGATCCAAAATATATTATTTATCAATCTCAAGTGTTGCGAAGTAGGTTATTTTCTCTAGGTATAGAAAATGCAACGTAGTAAGAAATTGAGGATTGATGTACTAAATCTCACTTAGCTGATTCCATTAATAACTTGTAGTTATAGTACATTAAAATATACTACTTGTAAAACTTCTTATTAGCCAGGGATTCGAGTTATGCATTTCTTTGTTCAAAACTCTTGGTACCTTATAAATCCTACCTTGAGAAGTAGAAATGTTGTTTTTGATTCTTTCACATTGTTTTTTAGTTGAAATTGTAGAAGCTTACAAAATGATTTTTTAGATTTATGTGCTTGTTAACGCCTTGTAACGACAAGTTACATAAAACTAGTATAGTAGTTTAGGCTCCCATACTGACAATGGCACTGGAAGCAATTTTTTTTCTGCTTTGTAAAACTGCTTGATTTCACTTTCGTTCTATGGTCTAACTCAGGGGTGATTTGACAGTGTTAAAAAAAAGACATGTGCATTAGGCCTTCAAATTTAAGGGGCCTCATTTTTAATAATAATAGGTTATAAGTTATTAATTTATAACAAATATTGAATACTATTTATAGAAAAAGTAAACTTTTCATGAAAAATGAAGGAATTATAGAAGAAATTTGACATATTTGAAGTACTATATCTCATGAAAAATAATTTAAAAATAAGAATGATTATATTATCAATTGAAAACTAGAAGAAATCAATTATATAAAGTTATTGATGATCCAAGCTTAAGGTCCCATTTAATTTTTGCTTTAGGCCACTAATACGGTTAAGCTGCTCAAGAAGGAGATCATGTTATTATTGGATAGTGTATGTTAGGACCTTATTTTGATTTATCTATAGTAACTTTTCATCAGTTGTTGTTATTGTACGTGATAAAATTTTGTACTTTGCATATCTTTATCCAAAATTAGGATGTTTAATGTCTTGAAGGTGATTTTAATCGGCTTTGGTGATGGTGGGACTTTTTCTTTTTAACCCAAATATGAGCTTGAGTGCTTCTATTTTAGGAGGTAAGACTTTCATTGCTTTTCTTGAATTCTAGTCTTCATAGATATTCC--TCTGAGCTTCAAATTTTAAAACTTAATGCTA</genome_strand>
        <mrna_strand>ATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA-CTTGATTGTTTCTATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTT-ACATCTAGAA-ATGATGTCAA--GGCATAT.........................................................................TTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734113" ref_strand="+" ref_description="SGN-E734113 [LB11DC07]">
      <seq>ggcttctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59522" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59222" g_stop="59126" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="433" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56583" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="724" r_length="291" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E734113" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59222" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGCTG</genome_strand>
        <mrna_strand>GGCTTCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458876" ref_strand="+" ref_description="SGN-E458876 [cPRO-32-N5]">
      <seq>gtcagttgattttccttagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaatttttaaacttaatgcttagtaagttatgtttaattaagcctctgaactagcttataaaatgttgtttgattgaaccttatacaaaaaggatgtctggtgattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59509" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59209" g_stop="59126" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="330" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56585" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="707" r_length="287" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E458876" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59209" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAA-TTTTGAACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGC</genome_strand>
        <mrna_strand>GTCAGTTGATTTTCCTTAGTAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTTAAACTTAATGCTTAGTAAGTTATGTTTAATTAAGCCTCTGAACTAGCTTATAAAATGTTGTTTGATTGAAC-CTTATACAAAAAGGATGTCTGGTGATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349183" ref_strand="+" ref_description="SGN-E349183 [cTOS-2-E4]">
      <seq>tctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatggttgttgattgaactttttatataaaaggatattaggtgattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59516" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59216" g_stop="59126" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="192" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="337" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="427" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56589" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="710" r_length="283" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E349183" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59216" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAAC-TTTTATATAAAAAGGATATTAGGTGATTAAAATAG</genome_strand>
        <mrna_strand>TCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGGTTGTTGATTGAACTTTTTATAT-AAAAGGATATTAGGTGATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578365" ref_strand="-" ref_description="SGN-E578365 [LE12CH09]">
      <seq>ccgtcagttgatcttccttagtaacatcaattcatggcggaacagacggagaaggcgttttgaagcagccaggtgtgtttctaagctctaagaagaccggaaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgattaaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59511" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59211" g_stop="59126" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="186" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="331" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="421" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56590" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="703" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="721"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E578365" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59211" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATA</genome_strand>
        <mrna_strand>CCGTCAGTTGATCTTCCTTAGTAACATCAATTCATGGCGGAACAGACGGAGAAGGCG-TTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGAAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722402" ref_strand="+" ref_description="SGN-E722402 [FC17AG02]">
      <seq>gggcgaattggcggccaatcggccgaattgctctgcaattagggtccgttatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgattanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59240" g_stop="59126" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="144" r_length="114" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="245" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="390" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="480" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56593" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="759" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="772"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E722402" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59240" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</genome_strand>
        <mrna_strand>CTCTGC-AATTAGGGTCCGTTATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724911" ref_strand="+" ref_description="SGN-E724911 [FC25CA11]">
      <seq>gggcgattggcggccaatcggccgaattgctctgcaattagcgtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgattaaaaaaaantttnnnnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59240" g_stop="59126" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="143" r_length="114" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="244" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="389" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="479" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56593" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="758" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="795"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E724911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59240" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</genome_strand>
        <mrna_strand>CTCTGC-AATTAGCGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691091" ref_strand="+" ref_description="SGN-E691091 [LH_Ea05D09]">
      <seq>ccgtgtagttgatcttccttagtaacaatcaatcatggcggacctgacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgataagaaatgcccattcactggcaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgtcgcaattacctacattatgtcaagaagtatcagagatatgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactatcggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccggaatgtaatgtgtttttccttttcaaattttgtttcttgtaggaatattatgccaaaactcttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactggctttaaaatgttggtttattgaacctttatataaaaaggatatttggtgattaaaaannaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59509" stop="56292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59211" g_stop="59126" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="188" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="333" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="423" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56593" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="701" r_length="278" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="718"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E691091" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59211" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGT-CAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</genome_strand>
        <mrna_strand>CCGTGTAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGACCTGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGATAAGAAATGCCCATTCACTGGCAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATCGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGAATGTAATGTGTTTTTCCTTTTCAAATTTTGTTTCTTGTAGGAATATTATGCCAAAACTCTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTGGC-TTTAAAATGTTGGTTTATTGAACCTTTATATAAAAAGGATATTTGGTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694931" ref_strand="+" ref_description="SGN-E694931 [LH_Ea05D09](-)">
      <seq>gtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgataagaaatgcccattcactggcaatgtttctattcgaggtcgtatccttgctggtacatgccccagtgctaagatgaacagaaccatcattgttcgtcgcaattacctacattatgtcaagaagtatcagagatatgagaagaggcactccaatattccagctcacatatccccgtgcttccgtgtgaaagagggagatcatgttactatcggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccagctggttctggtggtggcgggaagaaagctttccccggaatgtaatgtgtttttccttttcaaattttgtttcttgtaggaatattatgccaaaactcttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactggctttaaaatgttggtttattgaccctaaagataaaaaggatatttggtgattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59509" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59209" g_stop="59126" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="330" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56593" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="698" r_length="278" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="714"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E694931" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59209" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</genome_strand>
        <mrna_strand>GTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGATAAGAAATGCCCATTCACTGGCAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCCCAGTGCTAAGATGAACAGAACCATCATTGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCCCCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATCGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCCCCGGAATGTAATGTGTTTTTCCTTTTCAAATTTTGTTTCTTGTAGGAATATTATGCCAAAACTCTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTGGC-TTTAAAATGTTGGTTTATTGACCCTAAAGATAAAAAGGATATTTGGTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288347" ref_strand="-" ref_description="SGN-E288347 [cLES-16-C5]">
      <seq>cgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57457" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57157" g_stop="57123" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="125" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56593" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="404" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="417"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E288347" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288347" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57157" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</genome_strand>
        <mrna_strand>CGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715979" ref_strand="+" ref_description="SGN-E715979 [FB15DB11]">
      <seq>ctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59517" stop="56297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59217" g_stop="59126" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="193" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="428" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56597" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="705" r_length="277" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E715979" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59217" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</genome_strand>
        <mrna_strand>CTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351071" ref_strand="+" ref_description="SGN-E351071 [cTOS-6-D15]">
      <seq>aagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59286" stop="56297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58986" g_stop="58941" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="191" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="281" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56597" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="556" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E351071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58986" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</genome_strand>
        <mrna_strand>AAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351290" ref_strand="+" ref_description="SGN-E351290 [cTOS-6-D16]">
      <seq>aagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59286" stop="56297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58986" g_stop="58941" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="191" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="281" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56597" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="556" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E351290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58986" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</genome_strand>
        <mrna_strand>AAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719506" ref_strand="+" ref_description="SGN-E719506 [FC08AC07]">
      <seq>tgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaatgttgtttgattgaacttttatataaaaaggatattaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59503" stop="56299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59203" g_stop="59126" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="179" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="324" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="414" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56599" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="687" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E719506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59203" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTG</genome_strand>
        <mrna_strand>TGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397399" ref_strand="+" ref_description="SGN-E397399 [TUS-45-L5](-)">
      <seq>aacagaaccatcatggtttgtggcaattacctaccttatgtcaagaagtatcagggattcgagaaggggcactccaatattccagctcacatatccccgtggttccgagagaaagggggggatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgttttgaaggggattccggctggttttggtggtggcgggaagaaagctttccctggaatgtaatgtgtttttccctttcaaattttgttttttgtaggaatattatgtcaaaacgtttttacgttttactgagttgttttttcaaattttgaacttaaagttagtaagttatgttttattaagcctttgaactagcttttaaaatgttgtttgattgaacttttttataaaaaggatattagggggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57478" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57178" g_stop="57123" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="146" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56602" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="416" r_length="270" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E397399" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57178" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAG</genome_strand>
        <mrna_strand>AACAGAACCATCATGGTTTGTGGCAATTACCTACCTTATGTCAAGAAGTATCAGGG...........................................................................ATTCGAGAAGGGGCACTCCAATATTCCAGCTCACATATCCCCGTGGTTCCGAGAGAAAGGGGGGGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTTTTGAAGGGGATTCCGGCTGGTTTTGGTGGTGGCGGGAAGAAAGCTTTCCCTGGAATGTAATGTGTTTTTCCCTTTCAAATTTTGTTTTTTGTAGGAATATTATGTCAAAACGTTTTTACGTTTTACTGAGTTGTTTTTTCAAATTTTGAACTTAAAGTTAGTAAGTTATGTTTTATTAAGCCTTTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTTTATAAAAAGGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429513" ref_strand="-" ref_description="SGN-E429513 [STM-52-O3]">
      <seq>agtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagcccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttattaagcctctgaactagcttataaaatgttgtttgattgaacccttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59492" stop="56306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59192" g_stop="59126" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="168" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="313" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="403" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56606" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="670" r_length="267" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E429513" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429513" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59192" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATA</genome_strand>
        <mrna_strand>AGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGCCCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTATAAAATGTTGTTTGATTGAACCCTTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429512" ref_strand="+" ref_description="SGN-E429512 [STM-52-O3]">
      <seq>gtttggcatctctcgccgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtangaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttatttagcctctgaactagcttataaaatgttgtttgattgaacccctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59526" stop="56324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59226" g_stop="59126" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="202" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56607" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="703" r_length="266" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E429512" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59226" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGAT</genome_strand>
        <mrna_strand>GTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTCAGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTANGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTTAGCCTCTGAACTAGCTTATAAAATGTTGTTTGATTGAACCCCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592960" ref_strand="+" ref_description="SGN-E592960 [36180]">
      <seq>ggaaagggaggcaatcgatacttcaagagtatcggtttagtgattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttccaatttttaaacttaatgcttagtaagttatgtttaattaagcctctgaactagcttataaaatgttgttttgattgaaccttatacaaaaaaaggatgtctgggggngggaggcccgggtaacccaaatttcggccttatagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59310" stop="56299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59010" g_stop="58941" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="216" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="306" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56607" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="574" r_length="268" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E592960" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59010" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAG-GATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTG-TTTGATTGAA-CTTTTATATAAAAAGGAT</genome_strand>
        <mrna_strand>GGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGTGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAGTTATCT-TCCAATTTTTAAACTTAATGCTTAGTAAGTTATGTTTAATTAAGCCTCTGAACTAGCTTATAAAATGTTGTTTTGATTGAACCTTATACAAAAAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617885" ref_strand="+" ref_description="SGN-E617885 [68557]">
      <seq>ctagtggatcccccggcctgcaggtggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaatttttaaacttaatgcttagtaagttatgtttaattaagcctctgaactagcttataaaatgttgtttgattgaaccttatacaaaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59315" stop="56307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59004" g_stop="58941" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="89" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="234" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="324" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56607" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="589" r_length="265" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E617885" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59004" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAA-TTTTGAACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGAT</genome_strand>
        <mrna_strand>GGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTTAAACTTAATGCTTAGTAAGTTATGTTTAATTAAGCCTCTGAACTAGCTTATAAAATGTTGTTTGATTGAAC-CTTATACAAAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616790" ref_strand="+" ref_description="SGN-E616790 [90260]">
      <seq>atgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttattaagcctctgaactagcttataaaatgttgtttgattgaacccttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57481" stop="56311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57181" g_stop="57123" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="149" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56607" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="415" r_length="266" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E616790" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57181" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGAT</genome_strand>
        <mrna_strand>ATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTATAAAATGTTGTTTGATTGAACCCTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414179" ref_strand="+" ref_description="SGN-E414179 [STM-19-I1]">
      <seq>gccttccgttgatcttcctttcatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgagactactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttcgatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatatgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagctttaccgggatgtaatcttcgtgcctccctttcaaattttgtttcttgtaggaatatgatgtcaagacttttttgccttttactgagttattatcttcaaattttggaacttaatgctagntaagttgtttattaagcctctgaactagcttatgttatgttatttgattgaagaacctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59181" g_stop="59126" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="78" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="179" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="324" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="414" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56611" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="675" r_length="261" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E414179" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59181" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTT-TCTTCAAATTTTG-AACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAA</genome_strand>
        <mrna_strand>ATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGACTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCGATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTT-ACCGGGATGTAATCTTCGTGCCTCCCTTTCAAATTTTGTTTCTTGTAGGAATATGATGTCAAGACTTTTTTGCCTTTTACTGAGTTATTATCTTCAAATTTTGGAACTTAATGCTAGNTAAGT-TG-TTTATTAAGCCTCTGAACTAGCTTATGTTATGTTATTTGATTGAA-GAACCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348142" ref_strand="+" ref_description="SGN-E348142 [cTOF-27-M7]">
      <seq>agttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtangaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaactttatgntagtaagttatgttttattaagccctctgactagcttttnaatgttgtttgattgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59506" stop="56321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59206" g_stop="59126" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="182" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="327" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="417" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56621" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="667" r_length="250" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E348142" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59206" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAG-CCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTT</genome_strand>
        <mrna_strand>AGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTANGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTTATGNTAGTAAGTTATGTTTTATTAAGCCCTCTG-ACTAGCTTTT-NAATGTTGTTTGATTGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601026" ref_strand="-" ref_description="SGN-E601026 [54052]">
      <seq>taagccaccctcgttgagttctgcgtcctttggtaatcctcagtcatgcggagcagacagagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccatttactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgcaattacctacattatgtcaagaagtatcaaagatatgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccagctggttctggtggtggcgggaaaaaggctttcaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaaaacttttttgctttttactgagttatcatcttcaaattttggaacttaatgctagtaagtttgttattaagcctctgaactagcttatataatgttatttgattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="97" r_length="64" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="433" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56624" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="682" r_length="249" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E601026" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601026" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGT-TTCTTCAAATTTT-GAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAAC</genome_strand>
        <mrna_strand>TAATCCTCAGTCAT-GCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTTACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAAAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAGGCTTTCACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACTTTTTTGCTTTTTACTGAGTTATCATCTTCAAATTTTGGAACTTAATGCTAGTAAGTT-TG--TTATTAAGCCTCTGAACTAGCTTATATAATGTTATTTGATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373254" ref_strand="+" ref_description="SGN-E373254 [TUS-31-H11](-)">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttttaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaaaatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatccccgtgcttccgtgtgaaaaagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttttggtggtggcgggaaaaaagctttcactggaatgtaatgtgtttttccatttcaaattttgttttttgtaggaatattatgtcaaaacgtttttacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59521" stop="56340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56641" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="663" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E373254" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</genome_strand>
        <mrna_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTTTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAAATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCCCCGTGCTTCCGTGTGAAAAAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTTTGGTGGTGGCGGGAAAAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTTTTGTAGGAATATTATGTCAAAACGTTTTTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348683" ref_strand="+" ref_description="SGN-E348683 [cTOF-30-N21]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactggagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59521" stop="56340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56641" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="664" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="676"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E348683" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACT-GAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</genome_strand>
        <mrna_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373255" ref_strand="+" ref_description="SGN-E373255 [TUS-31-H11]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59520" stop="56340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56641" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="662" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="683"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E373255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</genome_strand>
        <mrna_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304184" ref_strand="+" ref_description="SGN-E304184 [cLEX-6-K5](-)">
      <seq>caggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59312" stop="56340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59012" g_stop="58941" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="217" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="307" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56641" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="538" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="555"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E304184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59012" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</genome_strand>
        <mrna_strand>CAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355492" ref_strand="+" ref_description="SGN-E355492 [cTOS-25-M23]">
      <seq>gaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59253" stop="56341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58953" g_stop="58941" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="158" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="248" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56642" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="478" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E355492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58953" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAA</genome_strand>
        <mrna_strand>GAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602793" ref_strand="+" ref_description="SGN-E602793 [55865]">
      <seq>cggcacgaggcgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttattaagcctctgaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59517" stop="56350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56644" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="660" r_length="229" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E602793" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTT</genome_strand>
        <mrna_strand>CGGCACGAGGCGTCAGTTGATCTTCCTCAGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTAAGCCTCTGAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457404" ref_strand="+" ref_description="SGN-E457404 [cPRO-2-J17]">
      <seq>gtttggcatctctcgccgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttattaagcctctgaactagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59526" stop="56346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59226" g_stop="59126" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="202" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56645" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="665" r_length="228" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E457404" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59226" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTT</genome_strand>
        <mrna_strand>GTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTCAGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213708" ref_strand="+" ref_description="SGN-E213708 [cLEC-76-P9]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="56345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56645" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="652" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E213708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTT</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734744" ref_strand="+" ref_description="SGN-E734744 [LB13BH09]">
      <seq>gccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctctgaactaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59512" stop="56350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="188" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="333" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="423" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56650" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="647" r_length="224" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="665"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E734744" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTA</genome_strand>
        <mrna_strand>GCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595053" ref_strand="+" ref_description="SGN-E595053 [38317]">
      <seq>gtcaagaagtattcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgcttagtaagttatgttttattaagcctctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57349" stop="56351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57139" g_stop="57123" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="108" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56651" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="330" r_length="222" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E595053" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57139" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGAAGTA-TCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATG-TTAGTAAGTTATGTTTTATTAAGCCTCTGAACT</genome_strand>
        <mrna_strand>GTCAAGAAGTATTCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTTAGTAAGTTATGTTTTATTAAGCCTCTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307190" ref_strand="+" ref_description="SGN-E307190 [cLEY-15-B5]">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggnttctgtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaaacttaatgttagtaagttatgttttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59524" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59224" g_stop="59126" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="435" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56653" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="655" r_length="220" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E307190" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59224" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGG-TTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGNTTCT-GTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAAACTTAATGTTAGTAAGTTATGTTTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288836" ref_strand="+" ref_description="SGN-E288836 [cLES-17-L11]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56653" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="644" r_length="219" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E288836" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAA</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304757" ref_strand="+" ref_description="SGN-E304757 [cLEX-11-J22]">
      <seq>tttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagtttgttcttcaaattttgaacttaatgttagtaaattatgttttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59454" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59154" g_stop="59126" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="130" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="275" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="365" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56654" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="583" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E304757" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59154" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGA</genome_strand>
        <mrna_strand>TTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTTGTTCTTCAAATTTTGAACTTAATGTTAGTAAATTATGTTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561964" ref_strand="-" ref_description="SGN-E561964 [20729]">
      <seq>cctccgccgtcagttgatttttccttagtaacgatcaatcatgcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaattntgtttcttgtaggaatattatgtcaagactttctgcttttactgagtatcttcaatttttaactaatgctagtaagtatgttatctcgtgccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59517" stop="56406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59218" g_stop="59126" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="193" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="428" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="638" r_length="210" r_score="0.825"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E561964" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561964" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59218" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGCCGTCAGTTGA-TCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTG</genome_strand>
        <mrna_strand>CCTC-CGCCGTCAGTTGATTTTTCCTTAGTAACGATCAATCAT-GCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTC-AATTNTGTTTCTTGTAGGAATATTATGTCAAGAC-TTTCTGC-TTTTACTGA---GTATCTTC-AATTTTTAAC-TAATGCTAGTAAG-TATGTTATCTCGTGCCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346910" ref_strand="+" ref_description="SGN-E346910 [cTOF-32-F21]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59520" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56656" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="647" r_length="216" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E346910" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCT</genome_strand>
        <mrna_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723682" ref_strand="+" ref_description="SGN-E723682 [FC21BD03]">
      <seq>ggccgattgctctgcaattagggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="56357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59249" g_stop="59126" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="369" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="459" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56657" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="674" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E723682" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59249" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCTCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTC</genome_strand>
        <mrna_strand>GGCCGATTGCTCTGCAA-TTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352175" ref_strand="+" ref_description="SGN-E352175 [cTOS-13-G22]">
      <seq>tcctctgcaaattagggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59242" g_stop="59126" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="218" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="363" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="453" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56657" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="668" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E352175" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59242" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTC</genome_strand>
        <mrna_strand>TCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699846" ref_strand="+" ref_description="SGN-E699846 [FA11BE07]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56657" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="642" r_length="217" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E699846" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTC</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309270" ref_strand="+" ref_description="SGN-E309270 [cLEY-22-M10]">
      <seq>taaaaagaccgggaagggaaagaggccgagtaagggaggcagtcaatacttcaaaagtatgggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcacacatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgagaggttcattgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtatttccatttcaaattttgtttgttgtaggaatattatgtcaaaacgtggctacgttctactgagttgactcttcaaattttgaacttaatgttagtaagttatgtttcattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59338" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59038" g_stop="58941" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="243" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="333" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56658" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="547" r_length="214" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E309270" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59038" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCT</genome_strand>
        <mrna_strand>TAAAAAGACCGGGAAGGGAAAGAGGCCGAGTAAGGGAGGCAGTCAATACTTCAAAAGTATGGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCACAC...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGAGAGGTTCATTGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTATTTCCATTTCAAATTTTGTTTGTTGTAGGAATATTATGTCAAAACGTGGCTACGTTCTACTGAGTTGACTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711748" ref_strand="+" ref_description="SGN-E711748 [FB02DE02]">
      <seq>tttggcatctttcgattaaaggtgatcttccttagtaacaatcaatcatggcggccctaaaggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59506" stop="56363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59225" g_stop="59126" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56661" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="647" r_length="211" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E711748" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59225" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAG</genome_strand>
        <mrna_strand>TTTGGCATCTTTCGATTAAAGGTGATCTTCCTTAGTAACAATCAATCATGGCGGCCCTAAAGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718046" ref_strand="+" ref_description="SGN-E718046 [FC03CA06]">
      <seq>aatcggccgaattgctcctcctctgcaaccatggtttggcatctctcgccgtcagttgatcttccttagcccaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcaaagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59552" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59260" g_stop="59126" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56662" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="679" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="733"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E718046" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59260" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACTCAGTCTCCTCCTCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCCTCTGCA-ACCATGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAG-CCCAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAAAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353823" ref_strand="+" ref_description="SGN-E353823 [cTOS-10-O24]">
      <seq>tcctctgcaaattagggtttggcatctctcgccgtcagttgatcttccttagtaacatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtangaatattatgtcaaaacgtttctacgttttactgagttgtttcttccaattttgaacttaatgttagtaagttatgttttattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59242" g_stop="59126" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="217" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="362" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56662" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="662" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E353823" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59242" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>TCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAAC-ATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTANGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCCAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221440" ref_strand="+" ref_description="SGN-E221440 [cLEL-10-G3](-)">
      <seq>tatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttatggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57512" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57212" g_stop="57123" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="180" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56662" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="390" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="407"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E221440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57212" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>TATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTATGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606366" ref_strand="+" ref_description="SGN-E606366 [22307]">
      <seq>agggtcgtcgcaacttacctacattatgtcaagaagtatccagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaatttttaaacttaatgcttagtaagttatgtttaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57463" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57165" g_stop="57123" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.84"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="135" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56662" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="346" r_length="211" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="356"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E606366" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57165" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCGTCGCAA-TTACCTACATTATGTCAAGAAGTAT-CAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATG-TTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>AGGGTCGTCGCAACTTACCTACATTATGTCAAGAAGTATCCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAGTTATCT-TCAAATTTTTAAACTTAATGCTTAGTAAGTTATGTTTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224124" ref_strand="+" ref_description="SGN-E224124 [cLEL-19-K4](-)">
      <seq>aaaaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaacagggagatcatgttactattggacagtgcaggcctttatccaaacccgtaaggttcaatgtcttgaaggtgattccggctggttctggtggtggccgaaacaaagctccctctggaatgtaatgcgattctccattacaaattttgtttcttgtaggaatagtatgtcaaaacgtttttacgtttgtttgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57340" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57040" g_stop="56958" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56871" g_stop="56662" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="293" r_length="210" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="294" polyA_stop="311"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E224124" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57040" e_stop="56958"/>
          <exon e_start="56871" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>AAAAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAACAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAACCCGTAAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCCGAAACAAAGCTCCCTCTGGAATGTAATGCGATTCTCCATTACAAATTTTGTTTCTTGTAGGAATAGTATGTCAAAACGTTTTTACGTTTGTTTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723948" ref_strand="+" ref_description="SGN-E723948 [FC22CC05]">
      <seq>cggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaaaaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagtttatgttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59465" stop="56364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59165" g_stop="59126" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="141" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="286" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="376" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56664" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="585" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E723948" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59165" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAG-TTATGTTTTATT</genome_strand>
        <mrna_strand>CGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTTATGTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346415" ref_strand="+" ref_description="SGN-E346415 [cTOF-23-K24]">
      <seq>ttagggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagntatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59531" stop="56366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59231" g_stop="59126" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="207" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="352" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="442" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56666" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="648" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E346415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59231" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTA</genome_strand>
        <mrna_strand>TTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGNTATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304045" ref_strand="+" ref_description="SGN-E304045 [cLEX-6-K5]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59520" stop="56366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56666" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="637" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E304045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTA</genome_strand>
        <mrna_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724052" ref_strand="+" ref_description="SGN-E724052 [FC22DF08]">
      <seq>gggcgattggcggccaatcggccgaattgctcctctgcaattcgggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59545" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59243" g_stop="59126" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="146" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="247" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="392" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="482" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="687" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="699"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E724052" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59243" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>CTCCTCTGC-AATTCGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714601" ref_strand="+" ref_description="SGN-E714601 [FB11DF05]">
      <seq>agggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59529" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59229" g_stop="59126" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="205" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="350" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="440" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="647" r_length="207" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="665"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E714601" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59229" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>AGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717017" ref_strand="+" ref_description="SGN-E717017 [FB18CG10]">
      <seq>atctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59519" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59219" g_stop="59126" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="195" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="340" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="635" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="655"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E717017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59219" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>ATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552431" ref_strand="+" ref_description="SGN-E552431 [cTSB-3-O14]">
      <seq>ggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59301" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59001" g_stop="58941" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="206" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="296" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="501" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="541"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E552431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59001" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>GGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226310" ref_strand="+" ref_description="SGN-E226310 [cLEL-26-F1](-)">
      <seq>ttaggatttaaaactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59274" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58974" g_stop="58941" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="179" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="269" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="474" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="493"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E226310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58974" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>TTAGGATTTAAAACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226680" ref_strand="+" ref_description="SGN-E226680 [cLEL-26-F1](-)">
      <seq>ctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57574" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="154" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="244" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56667" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="449" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E226680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</genome_strand>
        <mrna_strand>GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461616" ref_strand="+" ref_description="SGN-E461616 [cPRO-9-E5]">
      <seq>cggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccatttactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgcaattacctacattatgtcaagaagtatcaaagatatgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccagctggttctggtggtggcgggaaaaaggctttcaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaaaacttttttgctttttactgagttatcatcttcaaattttggaacttaatgctagtaagtttgttattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59465" stop="56407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59165" g_stop="59126" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="141" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="286" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="376" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56674" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="578" r_length="202" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="597"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E461616" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59165" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGT-TTCTTCAAATTTT-GAACTTAATGTTAGTAAGTT</genome_strand>
        <mrna_strand>CGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTTACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAAAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAGGCTTTCACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACTTTTTTGCTTTTTACTGAGTTATCATCTTCAAATTTTGGAACTTAATGCTAGTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264983" ref_strand="+" ref_description="SGN-E264983 [cLEI-10-D19]">
      <seq>caaattagggtttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgttttactgagttgtttcttcaaaatttgaacttaatgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59535" stop="56376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59235" g_stop="59126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="356" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="446" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56676" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="642" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E264983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59235" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAG</genome_strand>
        <mrna_strand>CAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAAATTTGAACTTAATGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453593" ref_strand="+" ref_description="SGN-E453593 [cSTS-20-D13]">
      <seq>tcccccgggctgcnggcggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaatttttaaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59469" stop="56404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59164" g_stop="59126" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="56" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="157" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="302" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="392" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56678" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="586" r_length="194" r_score="0.835"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E453593" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59164" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTA</genome_strand>
        <mrna_strand>GGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAGTTATCT-TCAAATTTTTAAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570221" ref_strand="+" ref_description="SGN-E570221 [14771]">
      <seq>tcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaattttgaaacttaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59508" stop="56404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59208" g_stop="59126" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="184" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="329" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="419" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56681" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="610" r_length="191" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E570221" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59208" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAATGTTA</genome_strand>
        <mrna_strand>TCAGTTGATCTTCCTCAGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTTGAAACTTAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585166" ref_strand="+" ref_description="SGN-E585166 [66885]">
      <seq>cgtccttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggaaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattatctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaagtgattccagctggttctggtggtggagggaaaaaagcttttaccgggatgtaatcttcattcctccatttcaaaatttgtgttttgtgtaggaatatgatgtcaaaacttttctgcttctactgagttatcttcaaattttgaaacttaatatgccagcaagtttgtattcttaaaatagcagcggtattctagtcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59199" g_stop="59126" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="175" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="320" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="410" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56685" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="599" r_length="189" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E585166" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59199" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTC-AAATTT-TGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAAT</genome_strand>
        <mrna_strand>CGTCCTTGGTAATCCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGAAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTATCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAAGTGATTCCAGCTGGTTCTGGTGGTGGAGGGAAAAAAGCTTTTACCGGGATGTAATCTTCATTCCTCCATTTCAAAATTTGTGTTTTGTGTAGGAATATGATGTCAAAACTTTTCTGC-TTCTACTGAG-T-TATCTTCAAATTTTGAAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603908" ref_strand="+" ref_description="SGN-E603908 [67097]">
      <seq>cgataagccaccctcgttgagttctgcgtccttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggaaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattatctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaagtgattccagctggttctggtggtggagggaaaaaagcttttaccgggatgtaatcttcattcctccatttcaaaatttgtgtaccgtgtaggaatatgatgtcaaaacttttctgcttctactgagttatcttcaaattttgaaacttaatatgccagcaaggtttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="100" r_length="65" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56685" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="625" r_length="189" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E603908" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTC-AAATTT-TGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAAT</genome_strand>
        <mrna_strand>TAATCCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGAAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTATCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAAGTGATTCCAGCTGGTTCTGGTGGTGGAGGGAAAAAAGCTTTTACCGGGATGTAATCTTCATTCCTCCATTTCAAAATTTGTGTACCGTGTAGGAATATGATGTCAAAACTTTTCTGC-TTCTACTGAG-T-TATCTTCAAATTTTGAAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587664" ref_strand="-" ref_description="SGN-E587664 [41200]">
      <seq>aatcctcagtcatggcggaggcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggaaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattatctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaagtgattccagctggttctggtggtggagggaaaaaagcttttaccgggatgtaatcttcattcctccatttcaaaatttgtgttttgtgtaggaatatgatgtcaaaacttttctgcttctactgagttatcttcaaattttgaaacttaatatgccagcaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59469" stop="56470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59189" g_stop="59126" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="166" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="311" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="401" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56685" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="590" r_length="189" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E587664" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587664" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59189" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCAATCATGGCGGA-ACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTC-AAATTT-TGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTG-AACTTAAT</genome_strand>
        <mrna_strand>AATCCTCAGTCATGGCGGAGGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGAAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTATCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAAGTGATTCCAGCTGGTTCTGGTGGTGGAGGGAAAAAAGCTTTTACCGGGATGTAATCTTCATTCCTCCATTTCAAAATTTGTGTTTTGTGTAGGAATATGATGTCAAAACTTTTCTGC-TTCTACTGAG-T-TATCTTCAAATTTTGAAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586304" ref_strand="+" ref_description="SGN-E586304 [60357]">
      <seq>acgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttactgagttatcttcaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57345" stop="56404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57045" g_stop="56958" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56871" g_stop="56694" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="265" r_length="177" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E586304" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57045" e_stop="56958"/>
          <exon e_start="56871" e_stop="56694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTT</genome_strand>
        <mrna_strand>ACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC-TTTTACTGAG-T-TATCTTCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567072" ref_strand="+" ref_description="SGN-E567072 [11141]">
      <seq>ggtttttgctacccagcatctctcgccttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccgggatgtaattttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagcacttttctgcttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59521" stop="56433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="111" r_length="96" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56710" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="612" r_length="165" r_score="0.827"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E567072" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAA-AACGTTTCTACGTTTTACTGAGT</genome_strand>
        <mrna_strand>GCATCTCTCGCCTTCATTTCATCTTCCTTTGCAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATTTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGCACTTTTCTGCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733797" ref_strand="+" ref_description="SGN-E733797 [LB10DH06]">
      <seq>gttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttctacgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59505" stop="56421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59205" g_stop="59126" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="326" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="416" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56722" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="568" r_length="152" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="585"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E733797" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59205" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGT-A-ATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTAC</genome_strand>
        <mrna_strand>GTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596080" ref_strand="-" ref_description="SGN-E596080 [39367]">
      <seq>ccgtagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59496" stop="56416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59196" g_stop="59126" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="317" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="407" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56722" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="559" r_length="152" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="576"/>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E596080" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596080" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59196" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAAT-GT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTAC</genome_strand>
        <mrna_strand>CCGTAGTAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTTCGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAGACTTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202742" ref_strand="+" ref_description="SGN-E202742 [cLEB-1-G16]">
      <seq>gcacgagctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaaggttagtaatctgagcaacctgttaaagttcgtaacttggggagatattttagcctaagatttgcgttttttctgataccggcagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttcttgtaggaatattatgtcaaaacgtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59515" stop="56423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="58941" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="427" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="517" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56723" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="666" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E202742" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-TCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTA</genome_strand>
        <mrna_strand>GCACGAGCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586260" ref_strand="+" ref_description="SGN-E586260 [60313]">
      <seq>gtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgtaattttcgtgcctccatttcaaatttgttcttgtaggaatattatgtcaagactttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57516" stop="56424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57216" g_stop="57123" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="184" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56724" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="333" r_length="149" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E586260" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57216" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAA-TGT-GTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAAC-GTTTCT</genome_strand>
        <mrna_strand>GTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGATGTAATTTTCGTGCCTCCATTTCAAA-TTTG-TTCTTGTAGGAATATTATGTCAAGACTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350297" ref_strand="+" ref_description="SGN-E350297 [cTOS-4-N18]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59525" stop="56451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59225" g_stop="59126" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56751" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="556" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E350297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59225" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTT</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTG-TTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281802" ref_strand="+" ref_description="SGN-E281802 [cLER-14-P11]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="56451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56751" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="546" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E281802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTT</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319224" ref_strand="+" ref_description="SGN-E319224 [cTOB-16-N24]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59521" stop="56485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E319224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339799" ref_strand="+" ref_description="SGN-E339799 [cTOE-16-L20]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59521" stop="56485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E339799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439031" ref_strand="+" ref_description="SGN-E439031 [cSTA-10-L19]">
      <seq>gccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaagttcaatgtattgaaagtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59512" stop="56485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="189" r_length="101" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="334" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="424" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="511" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E439031" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCG-TCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>GCCGTTCATTTCATCTTCCTTTGCAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAAGTTCAATGTATTGAAAGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473410" ref_strand="+" ref_description="SGN-E473410 [cSTB-32-C12]">
      <seq>gccttccgttgatcttcctttcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgagactactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttcgatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatatgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagctttcaccgggatgtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="415" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="502" r_length="87" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E473410" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>GCCTTCCGTTGATCTTCCTT--T--CAATC-AT---GGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGACTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCGATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTCACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337177" ref_strand="+" ref_description="SGN-E337177 [cTOE-7-J12]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaaagctttaccggaatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="109" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="532" r_length="87" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E337177" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212118" ref_strand="+" ref_description="SGN-E212118 [cLEC-75-D11]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="109" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="532" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E212118" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544657" ref_strand="+" ref_description="SGN-E544657 [TUS-67-B16]">
      <seq>ggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="113" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="536" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E544657" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562486" ref_strand="+" ref_description="SGN-E562486 [926]">
      <seq>gaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcggtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactgcctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59326" stop="56470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59026" g_stop="58941" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="232" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="409" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E562486" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59026" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTC-GTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>GAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTGCCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604995" ref_strand="+" ref_description="SGN-E604995 [57014]">
      <seq>atcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57469" stop="56482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57169" g_stop="57123" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56871" g_stop="56785" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E604995" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57169" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</genome_strand>
        <mrna_strand>ATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295412" ref_strand="+" ref_description="SGN-E295412 [cLET-23-L19]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56801" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="518" r_length="71" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E295412" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGA</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571324" ref_strand="+" ref_description="SGN-E571324 [12556]">
      <seq>agacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgagtgctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttggctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagcatcatgttactattggacagtgcaggcctttatccaaaatgtgaggttcaatgtatccgaaggtgattccgagccggttctggtggtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59468" stop="56657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59168" g_stop="59126" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.95"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="145" r_length="102" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="291" r_length="146" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="382" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56808" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E571324" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59168" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAG-GCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTT-GCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAG-ATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCT-TGAAGGTGATTCCG-GCTGGTTCTGGTGGTGGC</genome_strand>
        <mrna_strand>AGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGTGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGCATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAA-TGTGAGGTTCAATGTATCCGAAGGTGATTCCGAGCCGGTTCTGGTGGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302442" ref_strand="+" ref_description="SGN-E302442 [cLEW-27-M12]">
      <seq>tttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59204" g_stop="59126" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="326" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="416" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56827" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="461" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E302442" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59204" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTTCCTTAGT-AACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCC</genome_strand>
        <mrna_strand>TTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290513" ref_strand="+" ref_description="SGN-E290513 [cLES-20-O11]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaatgcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttatgattcaagactcctcgtgaggctactgaaggtacatatattggcgagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatattaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56837" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="482" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E290513" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGA</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAATGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTATGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGGCGAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATTACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269168" ref_strand="+" ref_description="SGN-E269168 [cLEI-16-K18]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaagatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaagcctttatccaaaaccgtgaggttcaatgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="56538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56838" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E269168" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTG</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAAGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAA......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283173" ref_strand="+" ref_description="SGN-E283173 [cLER-17-D17]">
      <seq>gccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgctttcgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56838" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E283173" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCG-TCAGTTGATCTTCCTTAGT-AACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTG</genome_strand>
        <mrna_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTTCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404574" ref_strand="+" ref_description="SGN-E404574 [PPC-14-B11]">
      <seq>taccgataagctatcctcgttgagttctgcgtcttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagacggggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtattggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggaaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatatgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcagacctttatccaaaaccgcgaggttcaatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="102" r_length="65" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="203" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="348" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56839" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="471" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E404574" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTT</genome_strand>
        <mrna_strand>TAATCCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACGGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATTGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGAAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................ACCTTTATCCAAAACCGCGAGGTTCAATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443964" ref_strand="+" ref_description="SGN-E443964 [cSTA-40-L16]">
      <seq>gccgtcagttgattttccttagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59512" stop="56541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="188" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="333" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="423" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56841" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="454" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E443964" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTC</genome_strand>
        <mrna_strand>GCCGTCAGTTGATTTTCCTTAGTAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292103" ref_strand="+" ref_description="SGN-E292103 [cLET-1-I7]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56852" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="467" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E292103" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGA</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG......................................................................................GCCTTTATCCAAAACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458536" ref_strand="+" ref_description="SGN-E458536 [cPRO-6-E17]">
      <seq>gttgagttctgcgtcttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagacggggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtattggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggaaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtctagaagtatcagagatatgagaagaggcactccaatatcccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggacagtgcagacctttatccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59484" stop="56658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59210" g_stop="59126" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="330" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56857" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="435" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E458536" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59210" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAAC</genome_strand>
        <mrna_strand>GTTGAGTTCTGCGT-CTTGGTAATCCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACGGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATTGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGAAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCTAGAAGTATCAGAG...........................................................................ATATGAGAAGAGGCACTCCAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................ACCTTTATCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291768" ref_strand="+" ref_description="SGN-E291768 [cLET-6-P2]">
      <seq>catctgtcggcgacagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttacgatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttgcgtgtgaaagagggagatcatgttactattggacagtgcaggccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59520" stop="56657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56958" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56871" g_stop="56865" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="438" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E291768" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56958"/>
          <exon e_start="56871" e_stop="56865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTA</genome_strand>
        <mrna_strand>CATCTGTCGGCGACAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTACGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTGCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476768" ref_strand="+" ref_description="SGN-E476768 [cSTB-45-L22]">
      <seq>gtttggcatctctcgccgtcagttgattttccttagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59526" stop="56662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59226" g_stop="59126" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="202" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56962" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="433" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E476768" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59226" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</genome_strand>
        <mrna_strand>GTTTGGCATCTCTCGCCGTCAGTTGATTTTCCTTAGTAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294495" ref_strand="-" ref_description="SGN-E294495 [cLET-14-L18](-)">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59524" stop="56664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59224" g_stop="59126" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E294495" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59224" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294494" ref_strand="+" ref_description="SGN-E294494 [cLET-14-L18]">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59524" stop="56664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59224" g_stop="59126" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E294494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59224" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278954" ref_strand="+" ref_description="SGN-E278954 [cLER-2-B13]">
      <seq>ggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59522" stop="56664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59222" g_stop="59126" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="427" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E278954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59222" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>GGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335931" ref_strand="+" ref_description="SGN-E335931 [cTOE-6-K17]">
      <seq>gagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59223" g_stop="59126" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56970" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="424" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E335931" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59223" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATCTCTCGCCG-TCAGTTGATCTTCCTTAGTA-ACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</genome_strand>
        <mrna_strand>GAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580737" ref_strand="+" ref_description="SGN-E580737 [5980]">
      <seq>ctcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattatctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59261" stop="56672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58961" g_stop="58941" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="166" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57047" g_stop="56972" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="242" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E580737" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58961" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACT</genome_strand>
        <mrna_strand>CTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTATCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280189" ref_strand="-" ref_description="SGN-E280189 [cLEL-7-O24](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttncgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59522" stop="56693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59228" g_stop="59126" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="349" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56993" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="404" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E280189" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59228" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTG</genome_strand>
        <mrna_strand>GCACGAGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTNCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397400" ref_strand="+" ref_description="SGN-E397400 [TUS-45-L5]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgtttttttttattacctacattatgtcaagaagtatcggagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59525" stop="56693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59225" g_stop="59126" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.86"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="56993" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="401" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E397400" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59225" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="56993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTG</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTTTTTTTTATTACCTACATTATGTCAAGAAGTATCGGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280121" ref_strand="-" ref_description="SGN-E280121 [cLEL-7-C15](-)">
      <seq>gcacgagcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59489" stop="56702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="79" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="57002" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="371" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E280121" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="57002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGC</genome_strand>
        <mrna_strand>AAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290383" ref_strand="+" ref_description="SGN-E290383 [cLES-20-K6]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59520" stop="56716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59220" g_stop="59126" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57047" g_stop="57016" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="373" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E290383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59220" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
          <exon e_start="57047" e_stop="57016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTC</genome_strand>
        <mrna_strand>CATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG...........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279283" ref_strand="-" ref_description="SGN-E279283 [cLEL-4-O14](-)">
      <seq>gcacgagctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59515" stop="56823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59126" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57123" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E279283" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-TCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG</genome_strand>
        <mrna_strand>GCACGAGCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277177" ref_strand="-" ref_description="SGN-E277177 [cLEL-3-H2](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgttttcgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59522" stop="56840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59228" g_stop="59126" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="332" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E277177" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59228" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTAT</genome_strand>
        <mrna_strand>GCACGAGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTCGAAGCAGCCAGGTGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416534" ref_strand="+" ref_description="SGN-E416534 [STM-23-M17]">
      <seq>gccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59512" stop="56888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59212" g_stop="59126" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="189" r_length="101" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="269" r_length="80" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E416534" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59212" e_stop="59126"/>
          <exon e_start="59041" e_stop="58941"/>
          <exon e_start="57267" e_stop="57188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCG-TCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAGGTACGTATTCATTTTGCTCAATTACTCTGCATTGTTGATTTATATTTTTGATATGAGCTTTCATATTTGCATAGTTGTGTGTCAGTCTAAATAACAATTAGTGTTGTGGAACGCCAAATTAGACATTTGTAGTCGAGGAATTCAGTCTTTCCTGCCTTTGTTGAAGGTTCAGTTTGCAGTCGCTTTGGATAAGATAGTCTTCATGAACCTGGGCCTTAAGAACTTGGAGCTTCTGCTTCTAACTTAGACGTCACAAATTTAGTGTATTTAGAATGAGTTGCGAATTGCGATCCTGACCTGTGGTTGAGATGTTCTGGGTGGAGAATATGTTATTATGGTCTGAATGGAGCCAAACATAAAATCTGTAAGACTACTAGTCTTCGATTTCCACTTCCCATCTATGAGAAGCAGTATTTTTTTTTTCCTGCACTGTCTTGATGTGTTGAGTACCAACTAGTTTAGGATTAAGTTGAGGGGAACAAGTGTAGGATTAAGGTTCTTGTACAAATTGTTCATGCCTTAAGTAATGGGTCTACATGCTTTAAATGGTCAAACTATCACTTCTATTATGTTTCTGCAGCTTAGTTGGCATTTGGTAAATCTTTCTACTATGAAGTTAAATTTTTTGCGATGTGGTTGGCTCTTTGTAAATCTTTCTTTAAGTTTTAGTGTTTCCACTGTAGTTGCCATTTGGTAAATATTTCTATTATGAAGTTATTTGCCATGCATCTGAAATGCATGAAATATGGTTTAATGCAATTTGAGTACACAAGGGGAAACATCGTATACTTGTTCTATAACTTCTTATTAGCTGGGGACTCAGTATATTAAGGCAATGTGGGTGCAAGTTATCCATATGTGTTTTAACCGGTTATGTGGCCTTCTCTTGATTTTATTTTAAATATGCTACAGAATTTCGGATAAAACCAAAGCATTTAGGATTGAAGCAATTCTGTTCTTCTCCTTAGCTTCTTCTCGTGAAGCTCTTGATTCTGCCTTTGCTTCACATAAACTAGATACTGGTTTTCCAACAATTAAACCTTTGACAGAACTAGGCTTCTGGGATTACAGGCCAAGTTGCAAGTTGCAACTCTTTTACTTGGACTTTTTTGTTCCATTTGTCAAATCGACTAAATACCTTCACGTTGTTAGCGTTTGTTTATATTTATGGAGCTTACATAGTGTATGATACTGTGAATAAAAACCTTCATATTACTGTCAATTAGTGGTGGGTATGGATCTCAATAGTGTGATGTTTATGATGTGGATAAGCTTAATATATCAAAAAAGTGCTGAATGAGTGGTGGGATAATTTCGGAGAACAGCAGGGCATTGAATTTTAGCTTATTTATTCTTTTTTGTTTCCTACATCAACCTGACCAGAATAAGATCAATAGCACATGGTAAATTCTTATGTGGGCATTCCAAAGAGACTACATTTACTTACATTTAAGTAAAGCTTGTAAATAAAAGATACTTCCTAAATAGCTATCTATGTGACCTTTATGTGGACATGTTGCTTGCTAGCTATAATGTTATCTAGATGTTGGATAGTTGAGAATGACTTTCATAACAAAGATTTCCTCAGATTTCAAGTTATCTTTTATATATGTTGGCACCAAATATCATTGATTATTTCATGGTAACCTTATGTTTGGTCTATTTAAATATAGGTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGT</genome_strand>
        <mrna_strand>GCCGTTCATTTCATCTTCCTTTGCAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG....................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579065" ref_strand="+" ref_description="SGN-E579065 [86189]">
      <seq>tcgccgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaaggagtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="-" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59514" stop="58677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59214" g_stop="59126" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59041" g_stop="58977" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="155" r_length="66" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="-" ref_id="SGN-E579065" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59214" e_stop="59126"/>
          <exon e_start="59041" e_stop="58977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAA-GAGTATTG</genome_strand>
        <mrna_strand>TCGCCGTCAGTTGATCTTCCTCAGTAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG....................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGGAGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281535" ref_strand="+" ref_description="SGN-E281535 [cLEL-1-L5](-)">
      <seq>cttacctggcctctttcccttcccggtcttcttagagctgccggtatcagaaaaaacgcaaatcttaggctaaaatatctccccaagttacgaactttaacaggttgctcagattactaaccttagaaacacacctggctgcttcaaaaacgccttctccgtctgttccgccatgattgattgttactaaggaagatcaactgacggcgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012A08-y58gU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0012A08.1" temp_strand="+" temp_description="C06HBa0012A08.1  AC211021.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012A08 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58705" stop="59515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59005" g_stop="59221" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012A08.1" gen_strand="+" ref_id="SGN-E281535" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59005" e_stop="59221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCTGGCCTCTTTCCCTTCCCGGTCTTCTTAGAGCTGCCGGTATCAGAAAAAACGCAAATCTTAGGCTAAAATATCTCCCCAAGTTACGAACTTTAACAGGTTGCTCAGATTACTAACCTTAGAAACACACCTGGCTGCTTCAAAAACGCCTTCTCCGTCTGTTCCGCCATGATTGATTGTTACTAAGGAAGATCAACTGACGGCGAG-AGATGC</genome_strand>
        <mrna_strand>CTTACCTGGCCTCTTTCCCTTCCCGGTCTTCTTAGAGCTGCCGGTATCAGAAAAAACGCAAATCTTAGGCTAAAATATCTCCCCAAGTTACGAACTTTAACAGGTTGCTCAGATTACTAACCTTAGAAACACACCTGGCTGCTTCAAAAACGCCTTCTCCGTCTGTTCCGCCATGATTGATTGTTACTAAGGAAGATCAACTGACGGCGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>312</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4729" PGL_stop="12585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4729" e_stop="4970"/>
            <exon e_start="5120" e_stop="5235"/>
            <exon e_start="5404" e_stop="5499"/>
            <exon e_start="5629" e_stop="5685"/>
            <exon e_start="5811" e_stop="5966"/>
            <exon e_start="6053" e_stop="6137"/>
            <exon e_start="6854" e_stop="6944"/>
            <exon e_start="7033" e_stop="7197"/>
            <exon e_start="7340" e_stop="7459"/>
            <exon e_start="7660" e_stop="7735"/>
            <exon e_start="7831" e_stop="8002"/>
            <exon e_start="8103" e_stop="9043"/>
            <exon e_start="9124" e_stop="9314"/>
            <exon e_start="9443" e_stop="9647"/>
            <exon e_start="9903" e_stop="11054"/>
            <exon e_start="11623" e_stop="11643"/>
            <exon e_start="11809" e_stop="11813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.798" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.978" e_score="0.917"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.401" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.203" e_score="0.998"/>
          <exon-intron don_prob="0.901" acc_prob="0.572" e_score="0.571"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="4729" e_stop="4970" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4971" i_stop="5119" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5120" e_stop="5235" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="5236" i_stop="5403" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5404" e_stop="5499" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5500" i_stop="5628" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5629" e_stop="5685" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5686" i_stop="5810" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5811" e_stop="5966" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6053" e_stop="6137" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.833">
            <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6854" e_stop="6944" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.911">
            <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7033" e_stop="7197" e_length="165"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.846">
            <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7340" e_stop="7459" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.798" acc_prob="0.932">
            <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7660" e_stop="7735" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7831" e_stop="8002" e_length="172"/>
          </exon>
          <intron i_serial="11" don_prob="0.943" acc_prob="0.852">
            <gDNA_intron_boundary i_start="8003" i_stop="8102" i_length="100"/>
          </intron>
          <exon e_serial="12" e_score="0.917">
            <gDNA_exon_boundary e_start="8103" e_stop="9043" e_length="941"/>
          </exon>
          <intron i_serial="12" don_prob="0.976" acc_prob="0.978">
            <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="9124" e_stop="9314" e_length="191"/>
          </exon>
          <intron i_serial="13" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9315" i_stop="9442" i_length="128"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="9443" e_stop="9647" e_length="205"/>
          </exon>
          <intron i_serial="14" don_prob="0.401" acc_prob="0.764">
            <gDNA_intron_boundary i_start="9648" i_stop="9902" i_length="255"/>
          </intron>
          <exon e_serial="15" e_score="0.998">
            <gDNA_exon_boundary e_start="9903" e_stop="11054" e_length="1152"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.203">
            <gDNA_intron_boundary i_start="11055" i_stop="11622" i_length="568"/>
          </intron>
          <exon e_serial="16" e_score="0.571">
            <gDNA_exon_boundary e_start="11623" e_stop="11643" e_length="21"/>
          </exon>
          <intron i_serial="16" don_prob="0.901" acc_prob="0.572">
            <gDNA_intron_boundary i_start="11644" i_stop="11808" i_length="165"/>
          </intron>
          <exon e_serial="17" e_score="0.600">
            <gDNA_exon_boundary e_start="11809" e_stop="11813" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4729" stop="4970"/>
              <exon start="5120" stop="5235"/>
              <exon start="5404" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4735" stop="4970"/>
              <exon start="5120" stop="5235"/>
              <exon start="5404" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5462" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5874" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7459"/>
              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="7995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5874" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7459"/>
              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="7984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5931" stop="5966"/>
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              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6068" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7088" stop="7197"/>
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              <exon start="8103" stop="8216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7120" stop="7197"/>
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              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="8002"/>
              <exon start="8103" stop="8478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7363" stop="7459"/>
              <exon start="7660" stop="7735"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7363" stop="7459"/>
              <exon start="7660" stop="7735"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7363" stop="7459"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8324" stop="8994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8476" stop="9043"/>
              <exon start="9124" stop="9256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8605" stop="9043"/>
              <exon start="9124" stop="9314"/>
              <exon start="9443" stop="9452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8722" stop="9043"/>
              <exon start="9124" stop="9314"/>
              <exon start="9443" stop="9480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8798" stop="9043"/>
              <exon start="9124" stop="9211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9314" stop="9314"/>
              <exon start="9443" stop="9647"/>
              <exon start="9903" stop="10245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9470" stop="9647"/>
              <exon start="9903" stop="10077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10063" stop="10935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10631" stop="11054"/>
              <exon start="11623" stop="11643"/>
              <exon start="11809" stop="11813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGATAAAGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATTTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAG : TTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAG : GTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAG : GCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAAT : CAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG : GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG : GCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAG : AGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG : GACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG : GTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG : GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAG : GTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGTGCAGATACTCTGTATCAAATGCGGGGAACATCTCGACTCAATTGTTTTAACGAGTATCCAACCTTCCCTGGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGTCCGTGCTGCCTTATATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAG : GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGTA : GGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAG : GTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGAGTTTCCTCCGTATATCAGGCTATCAGCAGTTGTGGTCATCCGGGTGAACATGTCATGCAAAATATTGGTCTTATTGATCAAGTTACTGCTTCGTCCCTTTTGATTAACCGTGGTTGACGCTCACATAGGGCCAAGTTCCTTCTGCAAACATCGGGCTATTATAGTAGACATAGTCAGTATTTCTGAACTGGAGCAAATTCTCCAAAGCTTGGTGACACCATGGTGTGGCAATTTGGTGCCGTTTTGTTACCAGAGTACTGGAGGCCCAGAGCTTGGCCTGACAACATAGAATTGGTTCAGTTGTTGATCGACAAGGTTGCAGAACAATGTGGGGTATTTGGAGGAAGTGGGCGATTTCATTGAAACTTCATATTGCAGACAGCAAGTAGATGTTGCCAAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTATTTAAGCAGTAGCCATATCATTTTAAGCTTTACTTTGTTTATCTCGATCCTCCGCCCCTTTCTCCCTCATTGTATGAACACATTAATGGAGCTCGACTAAAATTGATCTCTTATGATGA : ATAATAATAATGAGAAAAGAG : ATCAA</gDNA_template>
            <first_frame> Q  R  *  S  C  Y  F  C  R  F  *  I  C  S  S  V  C  M  F  G  L  F  K  *  R  L  R  L  K  L  I  L  C  E  G  R  F  S  C  F  C  F  V  V  N  *  F  V  L  E  V  F  G  G  *  E  I  C  V  E  C  M  C  L  R  N  G  Y  F  *  E  L  P  E  R  C  R  R  R  K  S :   *  C  *  E  S  V  V  H  G  A  M  A  S  M  C  R  S  A  C  D  S  A  M  *  R  R  A  G  V  L  F  P  T  R  S  Y  *  T   : G  *  S  I  N  K  P  S  F  R  P  A  D  A  S  I  *  S  S  F  *  D  P  L  S  C  D  *  R  P  A  E   : G  *  T  R  Y  R  *  G  V  C  T  S  D  F  V  A  R  T  K   : S  R  *  E  C  G  I  K  G  T  D  A  L  S  A  T  T  I  P  C  A  L  F  L  *  D  I  N  S  L  *  Y  Q  H  S  W  R  I  F  C  L  E  T  A  C  *  *  M  P  P  A  S   : G  Y  V  S  A  A  S  N  T  G  V  G  G  Q  R  F  A  C  K  *  V  A  L  Q  A  H  I  P  G :   P  A  *  E  A  P  S  S  E  W  L  E  C  L  C  *  F  E  K  A  C  C  R  G  C  I  H  I  S  *  :  R  *  E  W  G  A  S  C  W  S  P  T  C  H  E  T  A  G  *  C  S  I  I  S  D  I  Q  S  *  H  A  S  W  C  P  C  Y  S  L  A  C  Y  S  D  E  N  T  V  H  S  I  L  *  T  K  :  D  E  P  C  *  L  Y  S  S  I  *  S  V  Y  G  V  S  E  K  Q  L  L  H  R  D  E  V  *  N  E  V  *  R  *  R  S  S  R  T  E  :  V  Y  W  N  Y  S  W  H  *  K  C  *  P  Q  K  V  A  *  V  K  M  E  M  P  E   : G  S  M  G  *  N  F  C  Y  S  *  A  R  P  S  F  T  L  E  S  R  A  S  S  *  P  S  C  T  *  S  T  S  N  T  K  A  E  K  A  A  I  K  C  S  A  L  V  S  *  F  F  C  T  Y  *  G  R :   F  I  Q  S  S  C  R  H  F  T  S  Q  W  V  F  K  S  F  A  R  S  R  N  I  N  L  E  R  Q  F  C  R  K  *  R  V  G  L  F  *  E  A  T  Y  M  A  T  I  T  G  *  R  E  G  *  C  S  F  C  V  K  E  M  Y  I  R  *  T  A  S  F  R  E  A  *  I  I  F  Y  R  S  F  I  R  F  W  G  A  I  *  F  I  S  W  I  P  F  T  H  W  G  P  N  S  T  C  *  L  G  *  A  T  S  S  G  *  G  N  *  F  Q  L  T  G  K  T  M  V  S  S  V  F  W  S  L  T  *  S  D  G  I  R  I  E  G  C  R  Y  S  V  S  N  A  G  N  I  S  T  Q  L  F  *  R  V  S  N  L  P  W  S  *  T  *  Q  S  A  G  K  L  V  N  A  P  V  R  A  A  L  Y  S  D  V  R  S  F  W  R  N  Y  A  *  T  H  G  F  T  T  A  R  S  H  E  T  Q  R  R  E  L  Q  T  I  W  H  S  P  C  K  *  M  C  H  H  R  S  C  H  V  A  E  K  F  P  D  S  L  N  K  *  H  A  L  W  Y  T  S  T  S  I  P  Y  N  *  I  *  S  K  V  *  A  I  K  G  I  K  A  T  R  *  W  L  H  S  S  *  S  G  R  T  I  P  N  L  S  S  W  Y  S  R  *  R  G  Q  R  P  C  S  F  N  K  E  L  H  Q   : G  S  *  T  G  Y  S  P  W  K  V  C  *  S  C  K  V  Q  Q  L  *  R  I  D  S  *  T  G  S  H  F  *  F  *  W  *  A  Q  G  S  *  Q  E  L  A  G  C  I  Y  *  *  *  G  *  H  D  A  C  W  R  *  S  M  V  :  G  I  L  W  Y  G  S  E  D  F  Y  L  H  E  R  *  G  A  A  D  E  P  W  D  S  Q  F  K  R  R  G  Q  F  F  C  C  R  R  L  *  C  *  R  S  E  E  S  T  A  S  H  *  F  Q  S  G  R  F  L  D  N  R  E  V  L  L  N  *   : G  L  L  K  S  V  E  N  T  I  S  T  Q  L  L  A  F  L  G  I  L  E  G  G  Y  P  H  Q  S  P  F  *  L  P  D  G  W  S  P  H  *  C  S  F  C  N  L  Q  F  R  P  F  L  A  P  N  Y  D  D  L  S  I  Y  R  I  H  E  L  S  A  W  S  Q  S  C  F  R  L  F  P  Y  V  H  T  Q  F  *  Q  F  F  W  Q  L  *  M  *  I  R  K  *  Y  N  S  I  I  Y  V  Q  L  V  A  N  C  F  E  F  P  P  Y  I  R  L  S  A  V  V  V  I  R  V  N  M  S  C  K  I  L  V  L  L  I  K  L  L  L  R  P  F  *  L  T  V  V  D  A  H  I  G  P  S  S  F  C  K  H  R  A  I  I  V  D  I  V  S  I  S  E  L  E  Q  I  L  Q  S  L  V  T  P  W  C  G  N  L  V  P  F  C  Y  Q  S  T  G  G  P  E  L  G  L  T  T  *  N  W  F  S  C  *  S  T  R  L  Q  N  N  V  G  Y  L  E  E  V  G  D  F  I  E  T  S  Y  C  R  Q  Q  V  D  V  A  K  Y  R  Y  F  K  V  I  F  M  *  H  M  V  D  G  S  C  A  V  H  P  W  N  D  E  S  R  L  P  L  L  F  F  *  Y  L  M  L  L  D  F  L  Y  I  R  K  G  V  T  E  L  L  L  V  N  H  C  F  Y  E  T  S  I  V  V  H  G  F  C  V  *  Q  S  L  G  L  D  G  A  A  E  Y  T  M  V  S  G  L  L  F  A  A  A  C  L  T  Y  L  S  S  S  H  I  I  L  S  F  T  L  F  I  S  I  L  R  P  F  L  P  H  C  M  N  T  L  M  E  L  D  *  N  *  S  L  M  M   : N  N  N  N  E  K  R   : D  Q </first_frame>
            <second_frame>  R  D  K  V  A  I  S  A  D  S  E  F  V  L  Q  F  A  C  L  D  C  L  S  K  G  F  A  *  S  *  F  C  V  K  G  D  F  P  V  F  V  L  L  *  I  D  L  Y  W  K  C  L  E  D  E  R  S  A  L  S  V  C  V  Y  E  M  A  T  S  E  N  C  R  N  A  A  G  A  G  K   : V  D  A  E  K  A  L  Y  T  E  L  W  R  A  C  A  G  P  L  V  T  V  P  C  E  G  E  L  V  F  Y  F  P  Q  G  H  I  E  Q  :  V  E  A  S  T  N  Q  A  S  D  Q  Q  M  P  V  Y  N  L  P  S  K  I  L  C  R  V  I  N  V  L  L  K  :  A  E  P  D  T  D  E  V  Y  A  Q  V  T  L  L  P  E  P  N  :  Q  D  E  N  V  V  S  K  E  P  M  P  S  P  P  P  R  F  H  V  H  S  F  C  K  T  L  T  A  S  D  T  S  T  H  G  G  F  S  V  L  R  R  H  A  D  E  C  L  P  P  L  :  D  M  S  R  Q  P  P  T  Q  E  L  V  A  K  D  L  H  A  N  E  W  R  F  R  H  I  F  R   : G  Q  P  R  R  H  L  L  Q  S  G  W  S  V  F  V  S  S  K  R  L  V  A  G  D  A  F  I  F  L  R :   G  E  N  G  E  L  R  V  G  V  R  R  A  M  R  Q  Q  G  N  A  P  S  S  V  I  S  S  H  S  M  H  L  G  V  L  A  T  A  W  H  A  I  Q  T  K  T  L  F  T  V  Y  Y  K  P  R :   T  S  P  A  D  F  I  V  P  Y  D  Q  Y  M  E  S  L  K  N  N  Y  S  I  G  M  R  F  K  M  R  F  E  G  E  E  A  P  E  Q  R :   F  T  G  T  I  V  G  I  E  N  A  D  L  K  R  W  P  E  S  K  W  R  C  L  K  :  V  R  W  D  E  T  S  A  I  P  R  P  D  R  V  S  P  W  K  V  E  P  A  L  S  P  P  A  L  N  P  L  P  I  P  R  Q  K  R  P  R  S  N  V  L  P  S  S  P  D  S  S  V  L  T  R  E   : G  S  S  K  V  V  V  D  T  S  Q  A  S  G  F  S  R  V  L  Q  G  Q  E  I  S  T  L  R  G  N  F  V  E  N  N  E  S  D  S  S  E  K  P  P  I  W  Q  P  L  L  D  D  E  K  A  D  V  H  S  A  S  R  K  C  I  S  D  K  R  L  P  L  G  R  P  E  S  S  F  T  D  L  L  S  G  F  G  G  Q  S  S  S  S  H  G  F  H  S  P  T  G  G  Q  T  A  P  A  S  W  V  K  R  Q  A  L  D  K  E  T  D  F  S  L  L  A  K  Q  W  S  L  V  S  S  G  L  S  L  N  L  M  E  S  G  L  K  G  A  D  T  L  Y  Q  M  R  G  T  S  R  L  N  C  F  N  E  Y  P  T  F  P  G  H  R  P  D  N  Q  Q  G  N  W  L  M  P  P  S  V  L  P  Y  I  Q  M  S  A  H  S  G  E  I  M  P  K  P  M  A  S  P  Q  P  E  A  M  K  P  K  E  G  N  C  K  L  F  G  I  P  L  V  S  K  C  A  T  I  D  P  V  M  L  R  K  N  S  P  I  H  S  T  S  N  M  H  F  G  I  H  P  H  Q  F  P  I  I  E  S  D  Q  R  S  E  Q  S  K  G  S  K  L  P  D  D  G  F  I  V  H  D  Q  E  E  Q  F  Q  T  S  H  P  G  T  R  D  R  E  G  K  G  L  V  H  S  T  R  S  C  T  K  :  V  H  K  Q  G  T  A  L  G  R  S  V  D  L  A  K  F  N  N  Y  E  E  L  I  A  E  L  D  H  I  F  D  F  N  G  E  L  K  A  R  N  K  N  W  L  V  V  Y  T  D  D  E  G  D  M  M  L  V  G  D  D  P  W  * :   E  F  C  G  M  V  R  K  I  F  I  Y  T  K  D  E  V  Q  R  M  N  P  G  T  L  N  S  K  G  E  D  N  S  S  V  A  E  G  S  D  A  K  E  V  K  N  L  Q  L  H  I  D  S  S  P  E  D  S  *  I  I  E  K  S  S  L  I  E  :  V  Y  *  N  L  W  K  I  L  Y  P  P  S  C  W  H  F  *  G  F  W  K  V  V  T  H  I  K  V  P  F  S  F  R  M  A  G  L  P  I  D  A  A  S  V  I  C  S  F  D  P  F  W  R  Q  I  M  M  T  Y  L  Y  T  E  Y  M  N  Y  Q  P  G  H  S  L  A  F  A  Y  F  L  M  Y  I  P  S  F  N  S  S  S  G  S  S  R  C  K  *  E  N  D  T  T  A  *  F  M  Y  N  L  *  P  T  A  L  S  F  L  R  I  S  G  Y  Q  Q  L  W  S  S  G  *  T  C  H  A  K  Y  W  S  Y  *  S  S  Y  C  F  V  P  F  D  *  P  W  L  T  L  T  *  G  Q  V  P  S  A  N  I  G  L  L  *  *  T  *  S  V  F  L  N  W  S  K  F  S  K  A  W  *  H  H  G  V  A  I  W  C  R  F  V  T  R  V  L  E  A  Q  S  L  A  *  Q  H  R  I  G  S  V  V  D  R  Q  G  C  R  T  M  W  G  I  W  R  K  W  A  I  S  L  K  L  H  I  A  D  S  K  *  M  L  P  N  I  G  I  L  K  L  S  S  C  S  I  W  L  M  D  L  V  P  S  T  H  G  M  M  S  P  G  S  L  Y  C  S  F  S  I  *  C  C  W  I  S  C  I  *  E  K  V  S  L  N  Y  F  W  *  I  I  A  S  M  K  Q  A  S  *  C  M  D  F  V  S  S  N  P  W  D  W  M  V  L  L  N  I  L  W  Y  R  G  F  F  L  L  L  L  V  *  L  I  *  A  V  A  I  S  F  *  A  L  L  C  L  S  R  S  S  A  P  F  S  L  I  V  *  T  H  *  W  S  S  T  K  I  D  L  L  *  *  :  I  I  I  M  R  K  E  :  I   </second_frame>
            <third_frame>   E  I  K  L  L  F  L  P  I  L  N  L  F  F  S  L  H  V  W  I  V  *  V  K  A  S  L  E  V  D  F  V  *  R  E  I  F  L  F  L  F  C  C  E  L  I  C  T  G  S  V  W  R  M  R  D  L  R  *  V  Y  V  F  T  K  W  L  L  L  R  I  A  G  T  L  P  A  P  E  K  :  L  M  L  R  K  R  C  T  R  S  Y  G  E  H  V  Q  V  R  L  *  Q  C  H  V  K  A  S  W  C  S  I  S  H  K  V  I  L  N  R :   L  K  H  Q  Q  T  K  L  Q  T  S  R  C  Q  Y  I  I  F  L  L  R  S  S  V  V  *  L  T  S  C  *  R :   L  N  P  I  Q  M  R  C  M  H  K  *  L  C  C  Q  N  Q  I :   K  M  R  M  W  Y  Q  R  N  R  C  P  L  R  H  H  D  S  M  C  T  L  F  V  R  H  *  Q  P  L  I  P  A  L  M  E  D  F  L  S  *  D  G  M  L  M  N  A  S  R  L  W :   I  C  L  G  S  L  Q  H  R  S  W  W  P  K  I  C  M  Q  M  S  G  A  S  G  T  Y  S  G  :  A  S  L  G  G  T  F  F  R  V  V  G  V  S  L  L  V  R  K  G  L  L  Q  G  M  H  S  Y  F  L   : E  V  R  M  G  S  F  V  L  E  S  D  V  P  *  D  S  R  V  M  L  H  H  Q  *  Y  P  V  I  A  C  I  L  V  S  L  L  Q  L  G  M  L  F  R  R  K  H  C  S  Q  Y  I  I  N  Q   : G  R  A  L  L  T  L  *  F  H  M  I  S  I  W  S  L  *  K  T  I  T  P  S  G  *  G  L  K  *  G  L  K  V  K  K  L  Q  N  R   : G  L  L  E  L  *  L  A  L  K  M  L  T  S  K  G  G  L  S  Q  N  G  D  A  *  R :   F  D  G  M  K  L  L  L  F  L  G  Q  T  E  F  H  P  G  K  *  S  Q  L  L  A  L  L  H  L  I  H  F  Q  Y  Q  G  R  K  G  R  D  Q  M  F  C  P  R  L  L  I  L  L  Y  L  L  G  K  :  V  H  P  K  *  L  *  T  L  H  K  P  V  G  F  Q  E  F  C  K  V  K  K  Y  Q  P  *  E  A  I  L  *  K  I  T  S  R  T  L  L  R  S  H  L  Y  G  N  H  Y  W  M  T  R  R  L  M  F  I  L  R  Q  G  N  V  Y  Q  I  N  G  F  L  *  G  G  L  N  H  L  L  Q  I  F  Y  Q  V  L  G  G  N  L  V  H  L  M  D  S  I  H  P  L  G  A  K  Q  H  L  L  A  G  L  S  D  K  L  W  I  R  K  L  I  S  A  Y  W  Q  N  N  G  L  *  C  L  L  V  S  H  L  I  *  W  N  Q  D  *  R  V  Q  I  L  C  I  K  C  G  E  H  L  D  S  I  V  L  T  S  I  Q  P  S  L  V  I  D  L  T  I  S  R  E  I  G  *  C  P  R  P  C  C  L  I  F  R  C  P  L  I  L  E  K  L  C  L  N  P  W  L  H  H  S  P  K  P  *  N  P  K  K  G  T  A  N  Y  L  A  F  P  L  *  V  N  V  P  P  *  I  L  S  C  C  G  K  I  P  R  F  T  Q  Q  V  T  C  T  L  V  Y  I  H  I  N  S  L  *  L  N  L  I  K  G  L  S  N  Q  R  D  Q  S  Y  Q  M  M  A  S  *  F  M  I  R  K  N  N  S  K  P  L  I  L  V  L  E  I  E  R  A  K  A  L  F  I  Q  Q  G  V  A  P  R :   F  I  N  R  V  Q  P  L  E  G  L  L  I  L  Q  S  S  T  T  M  K  N  *  *  L  N  W  I  T  F  L  I  L  M  V  S  S  R  L  V  T  R  T  G  W  L  Y  I  L  M  M  R  V  T  *  C  L  L  E  M  I  H  G   : R  N  F  V  V  W  F  G  R  F  L  S  T  R  K  M  R  C  S  G  *  T  L  G  L  S  I  Q  K  A  R  T  I  L  L  L  Q  K  A  L  M  L  K  K  *  R  I  Y  S  F  T  L  I  P  V  R  K  I  L  R  *  *  R  S  P  P  *  L  R :   F  I  K  I  C  G  K  Y  Y  I  H  P  A  V  G  I  F  R  D  S  G  R  W  L  P  T  S  K  S  L  L  A  S  G  W  L  V  S  P  L  M  Q  L  L  *  F  A  V  S  T  L  F  G  A  K  L  *  *  L  I  Y  I  Q  N  T  *  I  I  S  L  V  T  V  L  L  S  L  I  S  L  C  T  Y  P  V  L  T  V  L  L  A  A  L  D  V  N  K  K  M  I  Q  Q  H  N  L  C  T  T  C  S  Q  L  L  *  V  S  S  V  Y  Q  A  I  S  S  C  G  H  P  G  E  H  V  M  Q  N  I  G  L  I  D  Q  V  T  A  S  S  L  L  I  N  R  G  *  R  S  H  R  A  K  F  L  L  Q  T  S  G  Y  Y  S  R  H  S  Q  Y  F  *  T  G  A  N  S  P  K  L  G  D  T  M  V  W  Q  F  G  A  V  L  L  P  E  Y  W  R  P  R  A  W  P  D  N  I  E  L  V  Q  L  L  I  D  K  V  A  E  Q  C  G  V  F  G  G  S  G  R  F  H  *  N  F  I  L  Q  T  A  S  R  C  C  Q  I  *  V  F  *  S  Y  L  H  V  A  Y  G  *  W  I  L  C  R  P  P  M  E  *  *  V  Q  A  P  S  T  V  L  L  V  S  D  V  A  G  F  L  V  Y  K  K  R  C  H  *  I  T  F  G  K  S  L  L  L  *  N  K  H  R  S  A  W  I  L  C  L  A  I  L  G  T  G  W  C  C  *  I  Y  Y  G  I  G  A  S  F  C  C  C  L  F  N  L  F  K  Q  *  P  Y  H  F  K  L  Y  F  V  Y  L  D  P  P  P  L  S  P  S  L  Y  E  H  I  N  G  A  R  L  K  L  I  S  Y  D  E :   *  *  *  *  E  K  R :   S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4862" stop="4970"/>
                    <exon start="5120" stop="5235"/>
                    <exon start="5404" stop="5499"/>
                    <exon start="5629" stop="5685"/>
                    <exon start="5811" stop="5966"/>
                    <exon start="6053" stop="6137"/>
                    <exon start="6854" stop="6944"/>
                    <exon start="7033" stop="7197"/>
                    <exon start="7340" stop="7459"/>
                    <exon start="7660" stop="7735"/>
                    <exon start="7831" stop="8002"/>
                    <exon start="8103" stop="9043"/>
                    <exon start="9124" stop="9443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2373</number_coding_nucleotides>
                  <number_encoded_amino_acids>791</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDLYWKCLEDERSALSVCVYEMATSENCRNAAGAGKVDAEKALYTELWRACAGPLVTVPCEGELVFYFPQGHIEQVEASTNQASDQQMPVYNLPSKILCRVINVLLKAEPDTDEVYAQVTLLPEPNQDENVVSKEPMPSPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNAPSSVISSHSMHLGVLATAWHAIQTKTLFTVYYKPRTSPADFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIENADLKRWPESKWRCLKVRWDETSAIPRPDRVSPWKVEPALSPPALNPLPIPRQKRPRSNVLPSSPDSSVLTREGSSKVVVDTSQASGFSRVLQGQEISTLRGNFVENNESDSSEKPPIWQPLLDDEKADVHSASRKCISDKRLPLGRPESSFTDLLSGFGGQSSSSHGFHSPTGGQTAPASWVKRQALDKETDFSLLAKQWSLVSSGLSLNLMESGLKGADTLYQMRGTSRLNCFNEYPTFPGHRPDNQQGNWLMPPSVLPYIQMSAHSGEIMPKPMASPQPEAMKPKEGNCKLFGIPLVSKCATIDPVMLRKNSPIHSTSNMHFGIHPHQFPIIESDQRSEQSKGSKLPDDGFIVHDQEEQFQTSHPGTRDREGKGLVHSTRSCTKVHKQGTALGRSVDLAKFNNYEELIAELDHIFDFNGELKARNKNWLVVYTDDEGDMMLVGDDPW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9957" stop="10193"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWKVVTHIKVPFSFRMAGLPIDAASVICSFDPFWRQIMMTYLYTEYMNYQPGHSLAFAYFLMYIPSFNSSSGSSRCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4729" e_stop="4970"/>
            <exon e_start="5120" e_stop="5235"/>
            <exon e_start="5404" e_stop="5499"/>
            <exon e_start="5629" e_stop="5685"/>
            <exon e_start="5811" e_stop="5966"/>
            <exon e_start="6053" e_stop="6137"/>
            <exon e_start="6854" e_stop="6944"/>
            <exon e_start="7033" e_stop="7197"/>
            <exon e_start="7340" e_stop="7459"/>
            <exon e_start="7660" e_stop="7735"/>
            <exon e_start="7831" e_stop="9043"/>
            <exon e_start="9124" e_stop="9314"/>
            <exon e_start="9443" e_stop="9647"/>
            <exon e_start="9903" e_stop="11054"/>
            <exon e_start="11623" e_stop="11643"/>
            <exon e_start="11809" e_stop="11813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.798" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.978" e_score="0.917"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.401" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.203" e_score="0.998"/>
          <exon-intron don_prob="0.901" acc_prob="0.572" e_score="0.571"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="4729" e_stop="4970" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4971" i_stop="5119" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5120" e_stop="5235" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="5236" i_stop="5403" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5404" e_stop="5499" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5500" i_stop="5628" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5629" e_stop="5685" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5686" i_stop="5810" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5811" e_stop="5966" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5967" i_stop="6052" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6053" e_stop="6137" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.833">
            <gDNA_intron_boundary i_start="6138" i_stop="6853" i_length="716"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6854" e_stop="6944" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.911">
            <gDNA_intron_boundary i_start="6945" i_stop="7032" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7033" e_stop="7197" e_length="165"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.846">
            <gDNA_intron_boundary i_start="7198" i_stop="7339" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7340" e_stop="7459" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.798" acc_prob="0.932">
            <gDNA_intron_boundary i_start="7460" i_stop="7659" i_length="200"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7660" e_stop="7735" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="7736" i_stop="7830" i_length="95"/>
          </intron>
          <exon e_serial="11" e_score="0.917">
            <gDNA_exon_boundary e_start="7831" e_stop="9043" e_length="1213"/>
          </exon>
          <intron i_serial="11" don_prob="0.976" acc_prob="0.978">
            <gDNA_intron_boundary i_start="9044" i_stop="9123" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="9124" e_stop="9314" e_length="191"/>
          </exon>
          <intron i_serial="12" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9315" i_stop="9442" i_length="128"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="9443" e_stop="9647" e_length="205"/>
          </exon>
          <intron i_serial="13" don_prob="0.401" acc_prob="0.764">
            <gDNA_intron_boundary i_start="9648" i_stop="9902" i_length="255"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="9903" e_stop="11054" e_length="1152"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.203">
            <gDNA_intron_boundary i_start="11055" i_stop="11622" i_length="568"/>
          </intron>
          <exon e_serial="15" e_score="0.571">
            <gDNA_exon_boundary e_start="11623" e_stop="11643" e_length="21"/>
          </exon>
          <intron i_serial="15" don_prob="0.901" acc_prob="0.572">
            <gDNA_intron_boundary i_start="11644" i_stop="11808" i_length="165"/>
          </intron>
          <exon e_serial="16" e_score="0.600">
            <gDNA_exon_boundary e_start="11809" e_stop="11813" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4729" stop="4970"/>
              <exon start="5120" stop="5235"/>
              <exon start="5404" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4735" stop="4970"/>
              <exon start="5120" stop="5235"/>
              <exon start="5404" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5462" stop="5499"/>
              <exon start="5629" stop="5685"/>
              <exon start="5811" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5874" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7459"/>
              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="7995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5874" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7459"/>
              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="7984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5931" stop="5966"/>
              <exon start="6053" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6068" stop="6137"/>
              <exon start="6854" stop="6944"/>
              <exon start="7033" stop="7197"/>
              <exon start="7340" stop="7371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7377" stop="7459"/>
              <exon start="7660" stop="7735"/>
              <exon start="7831" stop="8348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8094" stop="8539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8324" stop="8994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8476" stop="9043"/>
              <exon start="9124" stop="9256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8605" stop="9043"/>
              <exon start="9124" stop="9314"/>
              <exon start="9443" stop="9452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8722" stop="9043"/>
              <exon start="9124" stop="9314"/>
              <exon start="9443" stop="9480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8798" stop="9043"/>
              <exon start="9124" stop="9211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9314" stop="9314"/>
              <exon start="9443" stop="9647"/>
              <exon start="9903" stop="10245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9470" stop="9647"/>
              <exon start="9903" stop="10077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10063" stop="10935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10631" stop="11054"/>
              <exon start="11623" stop="11643"/>
              <exon start="11809" stop="11813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGATAAAGTTGCTATTTCTGCCGATTCTGAATTTGTTCTTCAGTTTGCATGTTTGGATTGTTTAAGTAAAGGCTTCGCTTGAAGTTGATTTTGTGTGAAGGGAGATTTTCCTGTTTTTGTTTTGTTGTGAATTGATTTGTACTGGAAGTGTTTGGAGGATGAGAGATCTGCGTTGAGTGTATGTGTTTACGAAATGGCTACTTCTGAGAATTGCCGGAACGCTGCCGGCGCCGGAAAAG : TTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGGCGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAG : GTTGAAGCATCAACAAACCAAGCTTCAGACCAGCAGATGCCAGTATATAATCTTCCTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAG : GCTGAACCCGATACAGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAAT : CAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCGCCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCGCCTCTG : GATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGG : GCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAG : AGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCTATTCAGACGAAAACACTGTTCACAGTATATTATAAACCAAG : GACGAGCCCTGCTGACTTTATAGTTCCATATGATCAGTATATGGAGTCTCTGAAAAACAATTACTCCATCGGGATGAGGTTTAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAG : GTTTACTGGAACTATAGTTGGCATTGAAAATGCTGACCTCAAAAGGTGGCCTGAGTCAAAATGGAGATGCCTGAAG : GTTCGATGGGATGAAACTTCTGCTATTCCTAGGCCAGACCGAGTTTCACCCTGGAAAGTAGAGCCAGCTCTTAGCCCTCCTGCACTTAATCCACTTCCAATACCAAGGCAGAAAAGGCCGCGATCAAATGTTCTGCCCTCGTCTCCTGATTCTTCTGTACTTACTAGGGAAGGTTATAACTTGCCCTTATATTTGAATTCCATACCCTGAACTGCGTTTATATCTACATTTCAAGCTGAGTGTTTCTTTTGTACTTTTGGCACTTTCTTAAGGTTCATCCAAAGTAGTTGTAGACACTTCACAAGCCAGTGGGTTTTCAAGAGTTTTGCAAGGTCAAGAAATATCAACCTTGAGAGGCAATTTTGTAGAAAATAACGAGTCGGACTCTTCTGAGAAGCCACCTATATGGCAACCATTACTGGATGACGAGAAGGCTGATGTTCATTCTGCGTCAAGGAAATGTATATCAGATAAACGGCTTCCTTTAGGGAGGCCTGAATCATCTTTTACAGATCTTTTATCAGGTTTTGGGGGGCAATCTAGTTCATCTCATGGATTCCATTCACCCACTGGGGGCCAAACAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGCAAAACAATGGTCTCTAGTGTCTTCTGGTCTCTCACTTAATCTGATGGAATCAGGATTGAAGGGTGCAGATACTCTGTATCAAATGCGGGGAACATCTCGACTCAATTGTTTTAACGAGTATCCAACCTTCCCTGGTCATAGACCTGACAATCAGCAGGGAAATTGGTTAATGCCCCCGTCCGTGCTGCCTTATATTCAGATGTCCGCTCATTCTGGAGAAATTATGCCTAAACCCATGGCTTCACCACAGCCCGAAGCCATGAAACCCAAAGAAGGGAACTGCAAACTATTTGGCATTCCCCTTGTAAGTAAATGTGCCACCATAGATCCTGTCATGTTGCGGAAAAATTCCCCGATTCACTCAACAAGTAACATGCACTTTGGTATACATCCACATCAATTCCCTATAATTGAATCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGCTACCAGATGATGGCTTCATAGTTCATGATCAGGAAGAACAATTCCAAACCTCTCATCCTGGTACTCGAGATAGAGAGGGCAAAGGCCTTGTTCATTCAACAAGGAGTTGCACCAAG : GTTCATAAACAGGGTACAGCCCTTGGAAGGTCTGTTGATCTTGCAAAGTTCAACAACTATGAAGAATTGATAGCTGAACTGGATCACATTTTTGATTTTAATGGTGAGCTCAAGGCTCGTAACAAGAACTGGCTGGTTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGTA : GGAATTTTGTGGTATGGTTCGGAAGATTTTTATCTACACGAAAGATGAGGTGCAGCGGATGAACCCTGGGACTCTCAATTCAAAAGGCGAGGACAATTCTTCTGTTGCAGAAGGCTCTGATGCTAAAGAAGTGAAGAATCTACAGCTTCACATTGATTCCAGTCCGGAAGATTCTTAGATAATAGAGAAGTCCTCCTTAATTGAG : GTTTATTAAAATCTGTGGAAAATACTATATCCACCCAGCTGTTGGCATTTTTAGGGATTCTGGAAGGTGGTTACCCACATCAAAGTCCCTTTTAGCTTCCGGATGGCTGGTCTCCCCATTGATGCAGCTTCTGTAATTTGCAGTTTCGACCCTTTTTGGCGCCAAATTATGATGACTTATCTATATACAGAATACATGAATTATCAGCCTGGTCACAGTCTTGCTTTCGCTTATTTCCTTATGTACATACCCAGTTTTAACAGTTCTTCTGGCAGCTCTAGATGTAAATAAGAAAATGATACAACAGCATAATTTATGTACAACTTGTAGCCAACTGCTTTGAGTTTCCTCCGTATATCAGGCTATCAGCAGTTGTGGTCATCCGGGTGAACATGTCATGCAAAATATTGGTCTTATTGATCAAGTTACTGCTTCGTCCCTTTTGATTAACCGTGGTTGACGCTCACATAGGGCCAAGTTCCTTCTGCAAACATCGGGCTATTATAGTAGACATAGTCAGTATTTCTGAACTGGAGCAAATTCTCCAAAGCTTGGTGACACCATGGTGTGGCAATTTGGTGCCGTTTTGTTACCAGAGTACTGGAGGCCCAGAGCTTGGCCTGACAACATAGAATTGGTTCAGTTGTTGATCGACAAGGTTGCAGAACAATGTGGGGTATTTGGAGGAAGTGGGCGATTTCATTGAAACTTCATATTGCAGACAGCAAGTAGATGTTGCCAAATATAGGTATTTTAAAGTTATCTTCATGTAGCATATGGTTGATGGATCTTGTGCCGTCCACCCATGGAATGATGAGTCCAGGCTCCCTCTACTGTTCTTTTAGTATCTGATGTTGCTGGATTTCTTGTATATAAGAAAAGGTGTCACTGAATTACTTTTGGTAAATCATTGCTTCTATGAAACAAGCATCGTAGTGCATGGATTTTGTGTCTAGCAATCCTTGGGACTGGATGGTGCTGCTGAATATACTATGGTATCGGGGCTTCTTTTTGCTGCTGCTTGTTTAACTTATTTAAGCAGTAGCCATATCATTTTAAGCTTTACTTTGTTTATCTCGATCCTCCGCCCCTTTCTCCCTCATTGTATGAACACATTAATGGAGCTCGACTAAAATTGATCTCTTATGATGA : ATAATAATAATGAGAAAAGAG : ATCAA</gDNA_template>
            <first_frame> Q  R  *  S  C  Y  F  C  R  F  *  I  C  S  S  V  C  M  F  G  L  F  K  *  R  L  R  L  K  L  I  L  C  E  G  R  F  S  C  F  C  F  V  V  N  *  F  V  L  E  V  F  G  G  *  E  I  C  V  E  C  M  C  L  R  N  G  Y  F  *  E  L  P  E  R  C  R  R  R  K  S :   *  C  *  E  S  V  V  H  G  A  M  A  S  M  C  R  S  A  C  D  S  A  M  *  R  R  A  G  V  L  F  P  T  R  S  Y  *  T   : G  *  S  I  N  K  P  S  F  R  P  A  D  A  S  I  *  S  S  F  *  D  P  L  S  C  D  *  R  P  A  E   : G  *  T  R  Y  R  *  G  V  C  T  S  D  F  V  A  R  T  K   : S  R  *  E  C  G  I  K  G  T  D  A  L  S  A  T  T  I  P  C  A  L  F  L  *  D  I  N  S  L  *  Y  Q  H  S  W  R  I  F  C  L  E  T  A  C  *  *  M  P  P  A  S   : G  Y  V  S  A  A  S  N  T  G  V  G  G  Q  R  F  A  C  K  *  V  A  L  Q  A  H  I  P  G :   P  A  *  E  A  P  S  S  E  W  L  E  C  L  C  *  F  E  K  A  C  C  R  G  C  I  H  I  S  *  :  R  *  E  W  G  A  S  C  W  S  P  T  C  H  E  T  A  G  *  C  S  I  I  S  D  I  Q  S  *  H  A  S  W  C  P  C  Y  S  L  A  C  Y  S  D  E  N  T  V  H  S  I  L  *  T  K  :  D  E  P  C  *  L  Y  S  S  I  *  S  V  Y  G  V  S  E  K  Q  L  L  H  R  D  E  V  *  N  E  V  *  R  *  R  S  S  R  T  E  :  V  Y  W  N  Y  S  W  H  *  K  C  *  P  Q  K  V  A  *  V  K  M  E  M  P  E   : G  S  M  G  *  N  F  C  Y  S  *  A  R  P  S  F  T  L  E  S  R  A  S  S  *  P  S  C  T  *  S  T  S  N  T  K  A  E  K  A  A  I  K  C  S  A  L  V  S  *  F  F  C  T  Y  *  G  R  L  *  L  A  L  I  F  E  F  H  T  L  N  C  V  Y  I  Y  I  S  S  *  V  F  L  L  Y  F  W  H  F  L  K  V  H  P  K  *  L  *  T  L  H  K  P  V  G  F  Q  E  F  C  K  V  K  K  Y  Q  P  *  E  A  I  L  *  K  I  T  S  R  T  L  L  R  S  H  L  Y  G  N  H  Y  W  M  T  R  R  L  M  F  I  L  R  Q  G  N  V  Y  Q  I  N  G  F  L  *  G  G  L  N  H  L  L  Q  I  F  Y  Q  V  L  G  G  N  L  V  H  L  M  D  S  I  H  P  L  G  A  K  Q  H  L  L  A  G  L  S  D  K  L  W  I  R  K  L  I  S  A  Y  W  Q  N  N  G  L  *  C  L  L  V  S  H  L  I  *  W  N  Q  D  *  R  V  Q  I  L  C  I  K  C  G  E  H  L  D  S  I  V  L  T  S  I  Q  P  S  L  V  I  D  L  T  I  S  R  E  I  G  *  C  P  R  P  C  C  L  I  F  R  C  P  L  I  L  E  K  L  C  L  N  P  W  L  H  H  S  P  K  P  *  N  P  K  K  G  T  A  N  Y  L  A  F  P  L  *  V  N  V  P  P  *  I  L  S  C  C  G  K  I  P  R  F  T  Q  Q  V  T  C  T  L  V  Y  I  H  I  N  S  L  *  L  N  L  I  K  G  L  S  N  Q  R  D  Q  S  Y  Q  M  M  A  S  *  F  M  I  R  K  N  N  S  K  P  L  I  L  V  L  E  I  E  R  A  K  A  L  F  I  Q  Q  G  V  A  P  R :   F  I  N  R  V  Q  P  L  E  G  L  L  I  L  Q  S  S  T  T  M  K  N  *  *  L  N  W  I  T  F  L  I  L  M  V  S  S  R  L  V  T  R  T  G  W  L  Y  I  L  M  M  R  V  T  *  C  L  L  E  M  I  H  G   : R  N  F  V  V  W  F  G  R  F  L  S  T  R  K  M  R  C  S  G  *  T  L  G  L  S  I  Q  K  A  R  T  I  L  L  L  Q  K  A  L  M  L  K  K  *  R  I  Y  S  F  T  L  I  P  V  R  K  I  L  R  *  *  R  S  P  P  *  L  R :   F  I  K  I  C  G  K  Y  Y  I  H  P  A  V  G  I  F  R  D  S  G  R  W  L  P  T  S  K  S  L  L  A  S  G  W  L  V  S  P  L  M  Q  L  L  *  F  A  V  S  T  L  F  G  A  K  L  *  *  L  I  Y  I  Q  N  T  *  I  I  S  L  V  T  V  L  L  S  L  I  S  L  C  T  Y  P  V  L  T  V  L  L  A  A  L  D  V  N  K  K  M  I  Q  Q  H  N  L  C  T  T  C  S  Q  L  L  *  V  S  S  V  Y  Q  A  I  S  S  C  G  H  P  G  E  H  V  M  Q  N  I  G  L  I  D  Q  V  T  A  S  S  L  L  I  N  R  G  *  R  S  H  R  A  K  F  L  L  Q  T  S  G  Y  Y  S  R  H  S  Q  Y  F  *  T  G  A  N  S  P  K  L  G  D  T  M  V  W  Q  F  G  A  V  L  L  P  E  Y  W  R  P  R  A  W  P  D  N  I  E  L  V  Q  L  L  I  D  K  V  A  E  Q  C  G  V  F  G  G  S  G  R  F  H  *  N  F  I  L  Q  T  A  S  R  C  C  Q  I  *  V  F  *  S  Y  L  H  V  A  Y  G  *  W  I  L  C  R  P  P  M  E  *  *  V  Q  A  P  S  T  V  L  L  V  S  D  V  A  G  F  L  V  Y  K  K  R  C  H  *  I  T  F  G  K  S  L  L  L  *  N  K  H  R  S  A  W  I  L  C  L  A  I  L  G  T  G  W  C  C  *  I  Y  Y  G  I  G  A  S  F  C  C  C  L  F  N  L  F  K  Q  *  P  Y  H  F  K  L  Y  F  V  Y  L  D  P  P  P  L  S  P  S  L  Y  E  H  I  N  G  A  R  L  K  L  I  S  Y  D  E :   *  *  *  *  E  K  R :   S  </first_frame>
            <second_frame>  R  D  K  V  A  I  S  A  D  S  E  F  V  L  Q  F  A  C  L  D  C  L  S  K  G  F  A  *  S  *  F  C  V  K  G  D  F  P  V  F  V  L  L  *  I  D  L  Y  W  K  C  L  E  D  E  R  S  A  L  S  V  C  V  Y  E  M  A  T  S  E  N  C  R  N  A  A  G  A  G  K   : V  D  A  E  K  A  L  Y  T  E  L  W  R  A  C  A  G  P  L  V  T  V  P  C  E  G  E  L  V  F  Y  F  P  Q  G  H  I  E  Q  :  V  E  A  S  T  N  Q  A  S  D  Q  Q  M  P  V  Y  N  L  P  S  K  I  L  C  R  V  I  N  V  L  L  K  :  A  E  P  D  T  D  E  V  Y  A  Q  V  T  L  L  P  E  P  N  :  Q  D  E  N  V  V  S  K  E  P  M  P  S  P  P  P  R  F  H  V  H  S  F  C  K  T  L  T  A  S  D  T  S  T  H  G  G  F  S  V  L  R  R  H  A  D  E  C  L  P  P  L  :  D  M  S  R  Q  P  P  T  Q  E  L  V  A  K  D  L  H  A  N  E  W  R  F  R  H  I  F  R   : G  Q  P  R  R  H  L  L  Q  S  G  W  S  V  F  V  S  S  K  R  L  V  A  G  D  A  F  I  F  L  R :   G  E  N  G  E  L  R  V  G  V  R  R  A  M  R  Q  Q  G  N  A  P  S  S  V  I  S  S  H  S  M  H  L  G  V  L  A  T  A  W  H  A  I  Q  T  K  T  L  F  T  V  Y  Y  K  P  R :   T  S  P  A  D  F  I  V  P  Y  D  Q  Y  M  E  S  L  K  N  N  Y  S  I  G  M  R  F  K  M  R  F  E  G  E  E  A  P  E  Q  R :   F  T  G  T  I  V  G  I  E  N  A  D  L  K  R  W  P  E  S  K  W  R  C  L  K  :  V  R  W  D  E  T  S  A  I  P  R  P  D  R  V  S  P  W  K  V  E  P  A  L  S  P  P  A  L  N  P  L  P  I  P  R  Q  K  R  P  R  S  N  V  L  P  S  S  P  D  S  S  V  L  T  R  E  G  Y  N  L  P  L  Y  L  N  S  I  P  *  T  A  F  I  S  T  F  Q  A  E  C  F  F  C  T  F  G  T  F  L  R  F  I  Q  S  S  C  R  H  F  T  S  Q  W  V  F  K  S  F  A  R  S  R  N  I  N  L  E  R  Q  F  C  R  K  *  R  V  G  L  F  *  E  A  T  Y  M  A  T  I  T  G  *  R  E  G  *  C  S  F  C  V  K  E  M  Y  I  R  *  T  A  S  F  R  E  A  *  I  I  F  Y  R  S  F  I  R  F  W  G  A  I  *  F  I  S  W  I  P  F  T  H  W  G  P  N  S  T  C  *  L  G  *  A  T  S  S  G  *  G  N  *  F  Q  L  T  G  K  T  M  V  S  S  V  F  W  S  L  T  *  S  D  G  I  R  I  E  G  C  R  Y  S  V  S  N  A  G  N  I  S  T  Q  L  F  *  R  V  S  N  L  P  W  S  *  T  *  Q  S  A  G  K  L  V  N  A  P  V  R  A  A  L  Y  S  D  V  R  S  F  W  R  N  Y  A  *  T  H  G  F  T  T  A  R  S  H  E  T  Q  R  R  E  L  Q  T  I  W  H  S  P  C  K  *  M  C  H  H  R  S  C  H  V  A  E  K  F  P  D  S  L  N  K  *  H  A  L  W  Y  T  S  T  S  I  P  Y  N  *  I  *  S  K  V  *  A  I  K  G  I  K  A  T  R  *  W  L  H  S  S  *  S  G  R  T  I  P  N  L  S  S  W  Y  S  R  *  R  G  Q  R  P  C  S  F  N  K  E  L  H  Q   : G  S  *  T  G  Y  S  P  W  K  V  C  *  S  C  K  V  Q  Q  L  *  R  I  D  S  *  T  G  S  H  F  *  F  *  W  *  A  Q  G  S  *  Q  E  L  A  G  C  I  Y  *  *  *  G  *  H  D  A  C  W  R  *  S  M  V  :  G  I  L  W  Y  G  S  E  D  F  Y  L  H  E  R  *  G  A  A  D  E  P  W  D  S  Q  F  K  R  R  G  Q  F  F  C  C  R  R  L  *  C  *  R  S  E  E  S  T  A  S  H  *  F  Q  S  G  R  F  L  D  N  R  E  V  L  L  N  *   : G  L  L  K  S  V  E  N  T  I  S  T  Q  L  L  A  F  L  G  I  L  E  G  G  Y  P  H  Q  S  P  F  *  L  P  D  G  W  S  P  H  *  C  S  F  C  N  L  Q  F  R  P  F  L  A  P  N  Y  D  D  L  S  I  Y  R  I  H  E  L  S  A  W  S  Q  S  C  F  R  L  F  P  Y  V  H  T  Q  F  *  Q  F  F  W  Q  L  *  M  *  I  R  K  *  Y  N  S  I  I  Y  V  Q  L  V  A  N  C  F  E  F  P  P  Y  I  R  L  S  A  V  V  V  I  R  V  N  M  S  C  K  I  L  V  L  L  I  K  L  L  L  R  P  F  *  L  T  V  V  D  A  H  I  G  P  S  S  F  C  K  H  R  A  I  I  V  D  I  V  S  I  S  E  L  E  Q  I  L  Q  S  L  V  T  P  W  C  G  N  L  V  P  F  C  Y  Q  S  T  G  G  P  E  L  G  L  T  T  *  N  W  F  S  C  *  S  T  R  L  Q  N  N  V  G  Y  L  E  E  V  G  D  F  I  E  T  S  Y  C  R  Q  Q  V  D  V  A  K  Y  R  Y  F  K  V  I  F  M  *  H  M  V  D  G  S  C  A  V  H  P  W  N  D  E  S  R  L  P  L  L  F  F  *  Y  L  M  L  L  D  F  L  Y  I  R  K  G  V  T  E  L  L  L  V  N  H  C  F  Y  E  T  S  I  V  V  H  G  F  C  V  *  Q  S  L  G  L  D  G  A  A  E  Y  T  M  V  S  G  L  L  F  A  A  A  C  L  T  Y  L  S  S  S  H  I  I  L  S  F  T  L  F  I  S  I  L  R  P  F  L  P  H  C  M  N  T  L  M  E  L  D  *  N  *  S  L  M  M   : N  N  N  N  E  K  R   : D  Q </second_frame>
            <third_frame>   E  I  K  L  L  F  L  P  I  L  N  L  F  F  S  L  H  V  W  I  V  *  V  K  A  S  L  E  V  D  F  V  *  R  E  I  F  L  F  L  F  C  C  E  L  I  C  T  G  S  V  W  R  M  R  D  L  R  *  V  Y  V  F  T  K  W  L  L  L  R  I  A  G  T  L  P  A  P  E  K  :  L  M  L  R  K  R  C  T  R  S  Y  G  E  H  V  Q  V  R  L  *  Q  C  H  V  K  A  S  W  C  S  I  S  H  K  V  I  L  N  R :   L  K  H  Q  Q  T  K  L  Q  T  S  R  C  Q  Y  I  I  F  L  L  R  S  S  V  V  *  L  T  S  C  *  R :   L  N  P  I  Q  M  R  C  M  H  K  *  L  C  C  Q  N  Q  I :   K  M  R  M  W  Y  Q  R  N  R  C  P  L  R  H  H  D  S  M  C  T  L  F  V  R  H  *  Q  P  L  I  P  A  L  M  E  D  F  L  S  *  D  G  M  L  M  N  A  S  R  L  W :   I  C  L  G  S  L  Q  H  R  S  W  W  P  K  I  C  M  Q  M  S  G  A  S  G  T  Y  S  G  :  A  S  L  G  G  T  F  F  R  V  V  G  V  S  L  L  V  R  K  G  L  L  Q  G  M  H  S  Y  F  L   : E  V  R  M  G  S  F  V  L  E  S  D  V  P  *  D  S  R  V  M  L  H  H  Q  *  Y  P  V  I  A  C  I  L  V  S  L  L  Q  L  G  M  L  F  R  R  K  H  C  S  Q  Y  I  I  N  Q   : G  R  A  L  L  T  L  *  F  H  M  I  S  I  W  S  L  *  K  T  I  T  P  S  G  *  G  L  K  *  G  L  K  V  K  K  L  Q  N  R   : G  L  L  E  L  *  L  A  L  K  M  L  T  S  K  G  G  L  S  Q  N  G  D  A  *  R :   F  D  G  M  K  L  L  L  F  L  G  Q  T  E  F  H  P  G  K  *  S  Q  L  L  A  L  L  H  L  I  H  F  Q  Y  Q  G  R  K  G  R  D  Q  M  F  C  P  R  L  L  I  L  L  Y  L  L  G  K  V  I  T  C  P  Y  I  *  I  P  Y  P  E  L  R  L  Y  L  H  F  K  L  S  V  S  F  V  L  L  A  L  S  *  G  S  S  K  V  V  V  D  T  S  Q  A  S  G  F  S  R  V  L  Q  G  Q  E  I  S  T  L  R  G  N  F  V  E  N  N  E  S  D  S  S  E  K  P  P  I  W  Q  P  L  L  D  D  E  K  A  D  V  H  S  A  S  R  K  C  I  S  D  K  R  L  P  L  G  R  P  E  S  S  F  T  D  L  L  S  G  F  G  G  Q  S  S  S  S  H  G  F  H  S  P  T  G  G  Q  T  A  P  A  S  W  V  K  R  Q  A  L  D  K  E  T  D  F  S  L  L  A  K  Q  W  S  L  V  S  S  G  L  S  L  N  L  M  E  S  G  L  K  G  A  D  T  L  Y  Q  M  R  G  T  S  R  L  N  C  F  N  E  Y  P  T  F  P  G  H  R  P  D  N  Q  Q  G  N  W  L  M  P  P  S  V  L  P  Y  I  Q  M  S  A  H  S  G  E  I  M  P  K  P  M  A  S  P  Q  P  E  A  M  K  P  K  E  G  N  C  K  L  F  G  I  P  L  V  S  K  C  A  T  I  D  P  V  M  L  R  K  N  S  P  I  H  S  T  S  N  M  H  F  G  I  H  P  H  Q  F  P  I  I  E  S  D  Q  R  S  E  Q  S  K  G  S  K  L  P  D  D  G  F  I  V  H  D  Q  E  E  Q  F  Q  T  S  H  P  G  T  R  D  R  E  G  K  G  L  V  H  S  T  R  S  C  T  K  :  V  H  K  Q  G  T  A  L  G  R  S  V  D  L  A  K  F  N  N  Y  E  E  L  I  A  E  L  D  H  I  F  D  F  N  G  E  L  K  A  R  N  K  N  W  L  V  V  Y  T  D  D  E  G  D  M  M  L  V  G  D  D  P  W  * :   E  F  C  G  M  V  R  K  I  F  I  Y  T  K  D  E  V  Q  R  M  N  P  G  T  L  N  S  K  G  E  D  N  S  S  V  A  E  G  S  D  A  K  E  V  K  N  L  Q  L  H  I  D  S  S  P  E  D  S  *  I  I  E  K  S  S  L  I  E  :  V  Y  *  N  L  W  K  I  L  Y  P  P  S  C  W  H  F  *  G  F  W  K  V  V  T  H  I  K  V  P  F  S  F  R  M  A  G  L  P  I  D  A  A  S  V  I  C  S  F  D  P  F  W  R  Q  I  M  M  T  Y  L  Y  T  E  Y  M  N  Y  Q  P  G  H  S  L  A  F  A  Y  F  L  M  Y  I  P  S  F  N  S  S  S  G  S  S  R  C  K  *  E  N  D  T  T  A  *  F  M  Y  N  L  *  P  T  A  L  S  F  L  R  I  S  G  Y  Q  Q  L  W  S  S  G  *  T  C  H  A  K  Y  W  S  Y  *  S  S  Y  C  F  V  P  F  D  *  P  W  L  T  L  T  *  G  Q  V  P  S  A  N  I  G  L  L  *  *  T  *  S  V  F  L  N  W  S  K  F  S  K  A  W  *  H  H  G  V  A  I  W  C  R  F  V  T  R  V  L  E  A  Q  S  L  A  *  Q  H  R  I  G  S  V  V  D  R  Q  G  C  R  T  M  W  G  I  W  R  K  W  A  I  S  L  K  L  H  I  A  D  S  K  *  M  L  P  N  I  G  I  L  K  L  S  S  C  S  I  W  L  M  D  L  V  P  S  T  H  G  M  M  S  P  G  S  L  Y  C  S  F  S  I  *  C  C  W  I  S  C  I  *  E  K  V  S  L  N  Y  F  W  *  I  I  A  S  M  K  Q  A  S  *  C  M  D  F  V  S  S  N  P  W  D  W  M  V  L  L  N  I  L  W  Y  R  G  F  F  L  L  L  L  V  *  L  I  *  A  V  A  I  S  F  *  A  L  L  C  L  S  R  S  S  A  P  F  S  L  I  V  *  T  H  *  W  S  S  T  K  I  D  L  L  *  *  :  I  I  I  M  R  K  E  :  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4862" stop="4970"/>
                    <exon start="5120" stop="5235"/>
                    <exon start="5404" stop="5499"/>
                    <exon start="5629" stop="5685"/>
                    <exon start="5811" stop="5966"/>
                    <exon start="6053" stop="6137"/>
                    <exon start="6854" stop="6944"/>
                    <exon start="7033" stop="7197"/>
                    <exon start="7340" stop="7459"/>
                    <exon start="7660" stop="7735"/>
                    <exon start="7831" stop="8040"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDLYWKCLEDERSALSVCVYEMATSENCRNAAGAGKVDAEKALYTELWRACAGPLVTVPCEGELVFYFPQGHIEQVEASTNQASDQQMPVYNLPSKILCRVINVLLKAEPDTDEVYAQVTLLPEPNQDENVVSKEPMPSPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNAPSSVISSHSMHLGVLATAWHAIQTKTLFTVYYKPRTSPADFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIENADLKRWPESKWRCLKVRWDETSAIPRPDRVSPWKVEPALSPPALNPLPIPRQKRPRSNVLPSSPDSSVLTREGYNLPLYLNSIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8102" stop="9043"/>
                    <exon start="9124" stop="9443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSKVVVDTSQASGFSRVLQGQEISTLRGNFVENNESDSSEKPPIWQPLLDDEKADVHSASRKCISDKRLPLGRPESSFTDLLSGFGGQSSSSHGFHSPTGGQTAPASWVKRQALDKETDFSLLAKQWSLVSSGLSLNLMESGLKGADTLYQMRGTSRLNCFNEYPTFPGHRPDNQQGNWLMPPSVLPYIQMSAHSGEIMPKPMASPQPEAMKPKEGNCKLFGIPLVSKCATIDPVMLRKNSPIHSTSNMHFGIHPHQFPIIESDQRSEQSKGSKLPDDGFIVHDQEEQFQTSHPGTRDREGKGLVHSTRSCTKVHKQGTALGRSVDLAKFNNYEELIAELDHIFDFNGELKARNKNWLVVYTDDEGDMMLVGDDPW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9957" stop="10193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWKVVTHIKVPFSFRMAGLPIDAASVICSFDPFWRQIMMTYLYTEYMNYQPGHSLAFAYFLMYIPSFNSSSGSSRCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11656" e_stop="12585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="11656" e_stop="12585" e_length="930"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11656" stop="12492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11667" stop="12058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11668" stop="12344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11668" stop="12107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11726" stop="11889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12102" stop="12435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12250" stop="12585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTACATTAGATGAGCAATACGAGGATAACGATTCAACTGTCGCCTACAATAAACTAGATATGTTTTTTGATAAGGAGTGTCTTGTTAATACAATACTTTCTTGTGACCAACTACAATCTTAATCCAGTATACTTCTGTAAAATCATTAAAGATCAACATAGAAAGGATGCTGCCTTCTCGACGTGGCAAGATTTACCTGAGCATTCCCAGAGATAAACTCAAAAGTTGCTTCATAAGCCCCACAAAGCTTAGTGGCCAACACAAATGAACTCTTAAAAGACCACACAGAGACTGTTGAGCTAAAATGTGATCACCTGATCTAAACGGGGATAGGCTCAGGAGCCGGATCCGAGGGAGTACCACTACTTCCATTGAGGACAGTCACATTGCCATCTGAATCAACGTCCACGATAACTGAATCACCTTCTTTAATCTCATTTGCAAGCATTTTCTCAGCCATGCTGTCCTCTAAAAGTCTCATAATAGCTCTTCTCAGAGGTCGTGCTCCATAGCTAGGGTTGTATCCCTCGTCAACCACCCTGTCTCTAAACCTCTCTGTCACTTGAAGTTCTATCTCCTTAACTTTCAACCTCTCAAAGACCTCCTTAAGCATGATATCAGCTATCTCCTTAACCTCTAACTTAGTGAGCTGACGGAATACAATCATCTCATCCAATCTGTTCAAAAACTCTGGCCTGAAGTACTGCTTCAATTCTTCTGTCACTAAGCTCTTGATGCGATTGTAACTGCTATCCTTCTCATCAAGGTCGAGATCAAAACCTATACGACGGCCACCTTTCTCAATTACACTACTTCCAACATTTGATGTCATGATGAGAAGTGTGTTCTTGAAATCTACAGTTCTACCCTTGCTGTCTGTCAATCTTCCATCTTCAAGAATTTGAAGCATCATGTTGAAGACATCAGG</gDNA_template>
            <first_frame> N  Y  I  R  *  A  I  R  G  *  R  F  N  C  R  L  Q  *  T  R  Y  V  F  *  *  G  V  S  C  *  Y  N  T  F  L  *  P  T  T  I  L  I  Q  Y  T  S  V  K  S  L  K  I  N  I  E  R  M  L  P  S  R  R  G  K  I  Y  L  S  I  P  R  D  K  L  K  S  C  F  I  S  P  T  K  L  S  G  Q  H  K  *  T  L  K  R  P  H  R  D  C  *  A  K  M  *  S  P  D  L  N  G  D  R  L  R  S  R  I  R  G  S  T  T  T  S  I  E  D  S  H  I  A  I  *  I  N  V  H  D  N  *  I  T  F  F  N  L  I  C  K  H  F  L  S  H  A  V  L  *  K  S  H  N  S  S  S  Q  R  S  C  S  I  A  R  V  V  S  L  V  N  H  P  V  S  K  P  L  C  H  L  K  F  Y  L  L  N  F  Q  P  L  K  D  L  L  K  H  D  I  S  Y  L  L  N  L  *  L  S  E  L  T  E  Y  N  H  L  I  Q  S  V  Q  K  L  W  P  E  V  L  L  Q  F  F  C  H  *  A  L  D  A  I  V  T  A  I  L  L  I  K  V  E  I  K  T  Y  T  T  A  T  F  L  N  Y  T  T  S  N  I  *  C  H  D  E  K  C  V  L  E  I  Y  S  S  T  L  A  V  C  Q  S  S  I  F  K  N  L  K  H  H  V  E  D  I  R </first_frame>
            <second_frame>  T  T  L  D  E  Q  Y  E  D  N  D  S  T  V  A  Y  N  K  L  D  M  F  F  D  K  E  C  L  V  N  T  I  L  S  C  D  Q  L  Q  S  *  S  S  I  L  L  *  N  H  *  R  S  T  *  K  G  C  C  L  L  D  V  A  R  F  T  *  A  F  P  E  I  N  S  K  V  A  S  *  A  P  Q  S  L  V  A  N  T  N  E  L  L  K  D  H  T  E  T  V  E  L  K  C  D  H  L  I  *  T  G  I  G  S  G  A  G  S  E  G  V  P  L  L  P  L  R  T  V  T  L  P  S  E  S  T  S  T  I  T  E  S  P  S  L  I  S  F  A  S  I  F  S  A  M  L  S  S  K  S  L  I  I  A  L  L  R  G  R  A  P  *  L  G  L  Y  P  S  S  T  T  L  S  L  N  L  S  V  T  *  S  S  I  S  L  T  F  N  L  S  K  T  S  L  S  M  I  S  A  I  S  L  T  S  N  L  V  S  *  R  N  T  I  I  S  S  N  L  F  K  N  S  G  L  K  Y  C  F  N  S  S  V  T  K  L  L  M  R  L  *  L  L  S  F  S  S  R  S  R  S  K  P  I  R  R  P  P  F  S  I  T  L  L  P  T  F  D  V  M  M  R  S  V  F  L  K  S  T  V  L  P  L  L  S  V  N  L  P  S  S  R  I  *  S  I  M  L  K  T  S   </second_frame>
            <third_frame>   L  H  *  M  S  N  T  R  I  T  I  Q  L  S  P  T  I  N  *  I  C  F  L  I  R  S  V  L  L  I  Q  Y  F  L  V  T  N  Y  N  L  N  P  V  Y  F  C  K  I  I  K  D  Q  H  R  K  D  A  A  F  S  T  W  Q  D  L  P  E  H  S  Q  R  *  T  Q  K  L  L  H  K  P  H  K  A  *  W  P  T  Q  M  N  S  *  K  T  T  Q  R  L  L  S  *  N  V  I  T  *  S  K  R  G  *  A  Q  E  P  D  P  R  E  Y  H  Y  F  H  *  G  Q  S  H  C  H  L  N  Q  R  P  R  *  L  N  H  L  L  *  S  H  L  Q  A  F  S  Q  P  C  C  P  L  K  V  S  *  *  L  F  S  E  V  V  L  H  S  *  G  C  I  P  R  Q  P  P  C  L  *  T  S  L  S  L  E  V  L  S  P  *  L  S  T  S  Q  R  P  P  *  A  *  Y  Q  L  S  P  *  P  L  T  *  *  A  D  G  I  Q  S  S  H  P  I  C  S  K  T  L  A  *  S  T  A  S  I  L  L  S  L  S  S  *  C  D  C  N  C  Y  P  S  H  Q  G  R  D  Q  N  L  Y  D  G  H  L  S  Q  L  H  Y  F  Q  H  L  M  S  *  *  E  V  C  S  *  N  L  Q  F  Y  P  C  C  L  S  I  F  H  L  Q  E  F  E  A  S  C  *  R  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0012A08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18876" PGL_stop="11628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18876" e_stop="18792"/>
            <exon e_start="16411" e_stop="15840"/>
            <exon e_start="15618" e_stop="15503"/>
            <exon e_start="15381" e_stop="15259"/>
            <exon e_start="15188" e_stop="15003"/>
            <exon e_start="14494" e_stop="14279"/>
            <exon e_start="14067" e_stop="13850"/>
            <exon e_start="13534" e_stop="13459"/>
            <exon e_start="13374" e_stop="13285"/>
            <exon e_start="13158" e_stop="11628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18876" e_stop="18792" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="18791" i_stop="16412" i_length="2380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16411" e_stop="15840" e_length="572"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15839" i_stop="15619" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15618" e_stop="15503" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15502" i_stop="15382" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15381" e_stop="15259" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15258" i_stop="15189" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15188" e_stop="15003" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15002" i_stop="14495" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14494" e_stop="14279" e_length="216"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14067" e_stop="13850" e_length="218"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13534" e_stop="13459" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13374" e_stop="13285" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13158" e_stop="11628" e_length="1531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18876" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18876" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18875" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18874" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18871" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18871" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18871" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18870" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18869" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18869" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18868" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18848" stop="18792"/>
              <exon start="16411" stop="15840"/>
              <exon start="15618" stop="15503"/>
              <exon start="15381" stop="15340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18847" stop="18792"/>
              <exon start="16411" stop="15932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542991" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E617169" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E234573" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCAGGGACTTCAG : GTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATACACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAG : GGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAG : GTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAG : GGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTGGTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGAAG : GTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG : TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG : TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG : CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG : GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</gDNA_template>
            <first_frame> P  *  S  H  F  P  L  N  P  S  S  P  F  P  S  I  F  F  N  N  L  P  D  S  S  G  T  S   : G  P  S  W  L  E  L  *  F  S  Q  Q  A  S  H  R  Q  L  L  V  K  G  Q  P  N  S  M  D  L  G  K  Q  K  E  L  L  Q  C  Y  A  M  H  N  H  L  H  L  H  *  G  I  L  Q  D  C  E  D  A  M  Q  *  I  H  *  L  D  L  A  K  L  S  N  P  K  *  L  L  Q  L  M  S  D  G  H  E  V  A  D  L  Y  Q  K  Q  C  L  S  A  S  Q  R  R  R  *  K  S  L  C  L  H  K  K  R  P  D  D  L  V  T  I  L  L  A  L  S  R  S  C  W  V  *  L  V  R  E  L  V  L  L  P  R  F  L  N  R  W  G  S  I  *  K  M  L  V  W  K  W  K  R  *  L  E  G  V  V  G  L  L  L  L  R  S  L  L  P  L  V  P  S  V  F  W  N  S  L  W  R  K  P  A  S  *  :  G  I  T  I  L  V  R  S  T  C  Y  L  D  C  Y  V  K  V  K  V  W  L  P  V  F  L  K  T  W  V  L  T  P  A  T  S  A  L  R :   *  S  G  W  L  V  R  V  M  R  L  L  V  L  A  L  E  V  E  L  L  A  K  K  C  Q  H  W  R  S  M  E  Q  I  *  Q  N  W  R  K  R :   E  N  W  T  P  L  L  E  D  S  R  K  L  N  G  S  L  K  S  W  V  G  G  L  R  T  T  L  V  L  L  V  N  Q  V  L  A  K  Q  L  L  L  R  V  W  H  K  E  L  Q  M  V  M  S  L  K  Q  L  R  G  R  R :   *  *  L  L  I  W  D  C  L  L  L  G  Q  N  T  V  E  S  L  R  K  G  *  K  S  *  W  R  K  L  S  R  V  M  K  *  Y  Y  L  S  M  K  C  T  H  *  L  E  L  E  Q  Q  R  G  P  S  M  L  Q  T  S  *  N  L  P  *  L  E  V  N  Y  S :   V  S  E  L  L  H  W  M  N  T  E  S  I  L  R  K  I  L  H  *  R  G  D  S  N  Q  L  R  S  L  N  L  L  L  M  K  L  Y  R  F  *  K  G  F  V  R  G  M  K  F  I  T  N  F  V  T  L  T  K  P  *  W  L  L  L  S  S  H  T  S  T  S   : V  T  D  F  C  L  T  K  Q  L  I  *  L  M  K  L  V  L  V  F  D  F  A  M  L  S :   S  P  R  K  Q  K  S  S  R  K  N  F  V  R  *  Q  R  R  R  M  K  L  F  V  V  K  I  S  K  R :   L  G  N  Y  V  I  E  K  W  I  *  R  H  R  S  Q  P  S  *  T  K  T  K  R  *  A  R  L  K  V  R  L  Q  I  Q  V  H  L  *  Q  K  Q  I  F  S  T  S  S  L  L  G  L  V  S  L  L  R  R  S  P  L  T  N  L  T  V  S  *  K  W  K  K  H  F  T  H  E  S  L  A  R  M  K  L  S  K  P  L  V  A  L  F  D  V  H  E  L  G  S  R  I  P  T  D  L  L  L  V  S  S  F  P  V  P  L  V  L  G  N  Q  N  W  Q  R  H  W  L  H  I  T  L  V  L  K  K  Q  *  S  G  L  I  *  V  S  S  W  K  D  T  L  S  L  N  S  L  D  P  P  L  V  M  L  V  T  Q  R  V  V  N  *  L  K  L  L  G  V  D  L  I  Q  L  C  S  L  M  R  L  R  R  L  I  L  M  S  S  T  *  C  F  K  F  L  K  M  E  D  *  Q  T  A  R  V  E  L  *  I  S  R  T  H  F  S  S  *  H  Q  M  L  E  V  V  *  L  R  K  V  A  V  V  *  V  L  I  S  T  L  M  R  R  I  A  V  T  I  A  S  R  A  *  *  Q  K  N  *  S  S  T  S  G  Q  S  F  *  T  D  W  M  R  *  L  Y  S  V  S  S  L  S  *  R  L  R  R  *  L  I  S  C  L  R  R  S  L  R  G  *  K  L  R  R  *  N  F  K  *  Q  R  G  L  E  T  G  W  L  T  R  D  T  T  L  A  M  E  H  D  L  *  E  E  L  L  *  D  F  *  R  T  A  W  L  R  K  C  L  Q  M  R  L  K  K  V  I  Q  L  S  W  T  L  I  Q  M  A  M  *  L  S  S  M  E  V  V  V  L  P  R  I  R  L  L  S  L  S  P  F  R  S  G  D  H  I  L  A  Q  Q  S  L  C  G  L  L  R  V  H  L  C  W  P  L  S  F  V  G  L  M  K  Q  L  L  S  L  S  L  G  M  L  R  *  I  L  P  R  R  E  G  S  I  L  S  M  L  I  F  N  D  F  T  E  V  Y  W  I  K  I  V  V  G  H  K  K  V  L  Y  *  Q  D  T  P  Y  Q  K  T  Y  L  V  Y  C  R  R  Q  L  N  R  Y  P  R  I  A  H  L  M  *  L  S  A  L  T  S  F  L  I  I </first_frame>
            <second_frame>  P  N  P  I  F  L  *  T  H  L  P  L  F  H  L  Y  S  S  T  I  S  Q  I  L  Q  G  L  Q  :  V  H  H  G  *  S  S  S  S  V  N  K  H  P  I  V  S  C  W  *  K  D  N  Q  I  Q  W  I  W  E  N  K  K  S  C  Y  N  A  M  Q  C  T  I  I  F  T  Y  T  E  G  F  Y  R  I  A  R  M  Q  C  N  R  Y  T  S  *  I  W  P  N  S  P  I  Q  S  S  C  C  N  L  C  Q  T  A  T  R  L  P  I  C  T  K  S  N  V  *  A  L  H  R  E  G  D  K  S  H  Y  A  C  T  R  R  G  Q  T  T  W  S  Q  F  C  W  H  *  A  D  L  V  G  S  N  W  *  G  N  W  Y  C  C  Q  G  S  *  I  D  G  D  Q  F  E  R  C  S  C  G  S  G  K  D  N  W  K  G  *  W  V  C  C  C  *  D  P  F  Y  P  S  C  Q  A  C  S  G  T  L  S  G  G  S  P  P  A  R :   A  *  L  Y  W  F  G  A  L  A  T  W  I  A  T  *  R  *  R  C  G  C  P  C  S  *  K  L  G  C  *  P  Q  Q  H  P  H  S   : G  D  P  D  G  W  *  E  *  *  G  C  W  C  *  R  W  R  W  N  F  W  P  K  N  A  N  T  G  G  V  W  N  K  F  D  K  I  G  G  R   : G  K  I  G  P  R  C  W  K  T  A  A  N  *  T  G  H  S  N  L  G  S  A  D  *  E  Q  P  L  S  Y  W  *  T  R  C  W  Q  N  S  Y  C  *  G  F  G  T  K  N  C  K  W  *  C  P  *  N  N  *  G  E  E   : G  D  N  S  *  Y  G  I  A  C  C  W  D  K  I  P  W  R  V  *  G  K  A  K  K  A  D  G  G  N  *  A  E  *  *  N  N  T  I  Y  R  *  S  A  H  I  D  W  S  W  S  S  R  G  G  H  R  C  C  K  H  L  E  T  C  P  S  S  R  *  T  T   : V  Y  R  S  Y  Y  T  G  *  I  Q  K  A  Y  *  E  R  S  C  T  R  E  E  I  P  T  S  *  G  P  *  T  Y  C  *  *  N  Y  T  D  S  E  R  A  S  *  E  V  *  N  S  S  Q  T  S  L  H  *  R  S  L  S  G  C  C  S  A  L  I  P  V  H  Q  :  *  P  I  S  A  *  Q  S  N  *  F  D  *  *  S  W  F  S  C  S  T  S  P  C  S   : A  P  R  G  S  K  R  A  R  E  R  T  S  S  D  N  K  G  E  E  *  S  C  S  W  S  R  F  R  K   : G  W  G  I  T  *  *  R  N  G  S  E  G  T  D  H  S  P  H  R  Q  K  Q  R  G  E  Q  G  *  K  *  G  C  R  Y  R  S  T  C  D  R  S  R  Y  S  A  H  R  L  F  L  D  W  Y  P  C  *  E  G  L  H  *  R  I  *  P  S  P  K  N  G  R  N  T  S  H  T  N  H  W  P  G  *  S  C  Q  S  H  *  S  R  Y  S  T  C  T  S  W  A  Q  E  S  Q  Q  T  Y  C  *  F  H  L  F  R  S  H  W  C  W  E  I  R  T  G  K  G  T  G  C  I  L  L  W  F  *  R  S  N  D  P  A  *  Y  E  *  V  H  G  K  T  H  C  L  *  T  H  W  I  P  P  W  L  C  W  L  H  R  G  W  S  I  D  *  S  C  *  A  S  T  L  Y  S  C  A  L  *  *  D  *  E  G  S  S  *  C  L  Q  H  D  A  S  N  S  *  R  W  K  I  D  R  Q  Q  G  *  N  C  R  F  Q  E  H  T  S  H  H  D  I  K  C  W  K  *  C  N  *  E  R  W  P  S  Y  R  F  *  S  R  P  *  *  E  G  *  Q  L  Q  S  H  Q  E  L  S  D  R  R  I  E  A  V  L  Q  A  R  V  F  E  Q  I  G  *  D  D  C  I  P  S  A  H  *  V  R  G  *  G  D  S  *  Y  H  A  *  G  G  L  *  E  V  E  S  *  G  D  R  T  S  S  D  R  E  V  *  R  Q  G  G  *  R  G  I  Q  P  *  L  W  S  T  T  S  E  K  S  Y  Y  E  T  F  R  G  Q  H  G  *  E  N  A  C  K  *  D  *  R  R  *  F  S  Y  R  G  R  *  F  R  W  Q  C  D  C  P  Q  W  K  *  W  Y  S  L  G  S  G  S  *  A  Y  P  R  L  D  Q  V  I  T  F  *  L  N  S  L  C  V  V  F  *  E  F  I  C  V  G  H  *  A  L  W  G  L  *  S  N  F  *  V  Y  L  W  E  C  S  G  K  S  C  H  V  E  K  A  A  S  F  L  C  *  S  L  M  I  L  Q  K  Y  T  G  L  R  L  *  L  V  T  R  K  Y  C  I  N  K  T  L  L  I  K  K  H  I  *  F  I  V  G  D  S  *  I  V  I  L  V  L  L  I  *  C  S  Y  L  R  L  P  L  F  S  L   </second_frame>
            <third_frame>   L  I  P  F  S  S  K  P  I  F  P  F  S  I  Y  I  L  Q  Q  S  P  R  F  F  R  D  F  R :   S  I  M  A  R  A  L  V  Q  S  T  S  I  P  S  S  V  A  G  E  R  T  T  K  F  N  G  S  G  K  T  K  R  A  V  T  M  L  C  N  A  Q  S  S  S  L  T  L  R  D  F  T  G  L  R  G  C  N  A  I  D  T  L  V  R  S  G  Q  T  L  Q  S  K  V  A  A  A  T  Y  V  R  R  P  R  G  C  R  F  V  P  K  A  M  F  E  R  F  T  E  K  A  I  K  V  I  M  L  A  Q  E  E  A  R  R  L  G  H  N  F  V  G  T  E  Q  I  L  L  G  L  I  G  E  G  T  G  I  A  A  K  V  L  K  S  M  G  I  N  L  K  D  A  R  V  E  V  E  K  I  I  G  R  G  S  G  F  V  A  V  E  I  P  F  T  P  R  A  K  R  V  L  E  L  S  L  E  E  A  R  Q  L   : G  H  N  Y  I  G  S  E  H  L  L  L  G  L  L  R  E  G  E  G  V  A  A  R  V  L  E  N  L  G  A  D  P  S  N  I  R  T  Q  :  V  I  R  M  V  G  E  S  N  E  A  V  G  A  S  V  G  G  G  T  S  G  Q  K  M  P  T  L  E  E  Y  G  T  N  L  T  K  L  A  E  E  :  G  K  L  D  P  V  V  G  R  Q  P  Q  I  E  R  V  T  Q  I  L  G  R  R  T  K  N  N  P  C  L  I  G  E  P  G  V  G  K  T  A  I  A  E  G  L  A  Q  R  I  A  N  G  D  V  P  E  T  I  E  G  K  K  :  V  I  T  L  D  M  G  L  L  V  A  G  T  K  Y  R  G  E  F  E  E  R  L  K  K  L  M  E  E  I  K  Q  S  D  E  I  I  L  F  I  D  E  V  H  T  L  I  G  A  G  A  A  E  G  A  I  D  A  A  N  I  L  K  P  A  L  A  R  G  E  L  Q  :  C  I  G  A  T  T  L  D  E  Y  R  K  H  I  E  K  D  P  A  L  E  R  R  F  Q  P  V  K  V  P  E  P  T  V  D  E  T  I  Q  I  L  K  G  L  R  E  R  Y  E  I  H  H  K  L  R  Y  T  D  E  A  L  V  A  A  A  Q  L  S  Y  Q  Y  I  S :   D  R  F  L  P  D  K  A  I  D  L  I  D  E  A  G  S  R  V  R  L  R  H  A  Q  :  L  P  E  E  A  K  E  L  E  K  E  L  R  Q  I  T  K  E  K  N  E  A  V  R  G  Q  D  F  E  K  :  A  G  E  L  R  D  R  E  M  D  L  K  A  Q  I  T  A  L  I  D  K  N  K  E  V  S  K  A  E  S  E  A  A  D  T  G  P  L  V  T  E  A  D  I  Q  H  I  V  S  S  W  T  G  I  P  V  E  K  V  S  T  D  E  S  D  R  L  L  K  M  E  E  T  L  H  T  R  I  I  G  Q  D  E  A  V  K  A  I  S  R  A  I  R  R  A  R  V  G  L  K  N  P  N  R  P  I  A  S  F  I  F  S  G  P  T  G  V  G  K  S  E  L  A  K  A  L  A  A  Y  Y  F  G  S  E  E  A  M  I  R  L  D  M  S  E  F  M  E  R  H  T  V  S  K  L  I  G  S  P  P  G  Y  V  G  Y  T  E  G  G  Q  L  T  E  A  V  R  R  R  P  Y  T  V  V  L  F  D  E  I  E  K  A  H  P  D  V  F  N  M  M  L  Q  I  L  E  D  G  R  L  T  D  S  K  G  R  T  V  D  F  K  N  T  L  L  I  M  T  S  N  V  G  S  S  V  I  E  K  G  G  R  R  I  G  F  D  L  D  L  D  E  K  D  S  S  Y  N  R  I  K  S  L  V  T  E  E  L  K  Q  Y  F  R  P  E  F  L  N  R  L  D  E  M  I  V  F  R  Q  L  T  K  L  E  V  K  E  I  A  D  I  M  L  K  E  V  F  E  R  L  K  V  K  E  I  E  L  Q  V  T  E  R  F  R  D  R  V  V  D  E  G  Y  N  P  S  Y  G  A  R  P  L  R  R  A  I  M  R  L  L  E  D  S  M  A  E  K  M  L  A  N  E  I  K  E  G  D  S  V  I  V  D  V  D  S  D  G  N  V  T  V  L  N  G  S  S  G  T  P  S  D  P  A  P  E  P  I  P  V  *  I  R  *  S  H  F  S  S  T  V  S  V  W  S  F  K  S  S  F  V  L  A  T  K  L  C  G  A  Y  E  A  T  F  E  F  I  S  G  N  A  Q  V  N  L  A  T  S  R  R  Q  H  P  F  Y  V  D  L  *  *  F  Y  R  S  I  L  D  *  D  C  S  W  S  Q  E  S  I  V  L  T  R  H  S  L  S  K  N  I  S  S  L  L  *  A  T  V  E  S  L  S  S  Y  C  S  S  N  V  V  I  C  A  Y  L  F  S  H  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18874" stop="18792"/>
                    <exon start="16411" stop="15840"/>
                    <exon start="15618" stop="15503"/>
                    <exon start="15381" stop="15259"/>
                    <exon start="15188" stop="15003"/>
                    <exon start="14494" stop="14279"/>
                    <exon start="14067" stop="13850"/>
                    <exon start="13534" stop="13459"/>
                    <exon start="13374" stop="13285"/>
                    <exon start="13158" stop="11977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2859</number_coding_nucleotides>
                  <number_encoded_amino_acids>953</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIPFSSKPIFPFSIYILQQSPRFFRDFRSIMARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGQTLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14833" e_stop="14279"/>
            <exon e_start="14067" e_stop="13850"/>
            <exon e_start="13534" e_stop="13459"/>
            <exon e_start="13374" e_stop="13285"/>
            <exon e_start="13158" e_stop="11628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14833" e_stop="14279" e_length="555"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14278" i_stop="14068" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14067" e_stop="13850" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13849" i_stop="13535" i_length="315"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13534" e_stop="13459" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13374" e_stop="13285" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13158" e_stop="11628" e_length="1531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14494" stop="14279"/>
              <exon start="14067" stop="13892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14462" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14441" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14441" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14440" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14428" stop="14279"/>
              <exon start="14067" stop="13939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14410" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14410" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14404" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14400" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14371" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14371" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14346" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14341" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14325" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14279"/>
              <exon start="14067" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14049" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14049" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14023" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14011" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14011" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14010" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14007" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14002" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13950" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13948" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13938" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13932" stop="13850"/>
              <exon start="13534" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="13002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13917" stop="13850"/>
              <exon start="13534" stop="13459"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13914" stop="13850"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13368" stop="13285"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="13158" stop="12792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13285"/>
              <exon start="13158" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13341" stop="13285"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13334" stop="13285"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="13158" stop="12682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13143" stop="12530"/>
            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13139" stop="12366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13137" stop="12517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246366" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13061" stop="12301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13047" stop="12548"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13026" stop="12298"/>
            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12995" stop="12312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E309995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12963" stop="12537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12956" stop="12238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12952" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12918" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12918" stop="12321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12918" stop="12388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12915" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12887" stop="12095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12874" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12851" stop="12357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12811" stop="12351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12806" stop="11893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12805" stop="12266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12781" stop="12093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12768" stop="12393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12765" stop="12459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12740" stop="12186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12719" stop="12266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12716" stop="11889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="12042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12696" stop="12098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12674" stop="12449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12632" stop="12128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12599" stop="11848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12595" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12589" stop="11843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12545" stop="11692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12535" stop="11944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12535" stop="11944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12528" stop="12091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12493" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12491" stop="11650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12481" stop="12091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12466" stop="11681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12435" stop="12102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12402" stop="11780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12392" stop="11797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12385" stop="11691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12354" stop="11662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12335" stop="11690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12302" stop="11686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="11672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="11638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12295" stop="11676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617039" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12279" stop="11690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441388" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12277" stop="11872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12274" stop="11636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12274" stop="11636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12274" stop="11688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12274" stop="11783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12212" stop="11761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12207" stop="11637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12179" stop="11650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12154" stop="11690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12150" stop="11676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12141" stop="11628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12141" stop="11645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12120" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12107" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12087" stop="11636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12084" stop="11702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12067" stop="11856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12042" stop="11675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12038" stop="11687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12021" stop="11676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12000" stop="11663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11980" stop="11628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11900" stop="11687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAATTGAAATATGTCAAATTATATTTTCAGTGTCTGTGTTCTCTTGAATTTTTTTATATATAAATTCTTCCGTGCTACTTGTTCTCTTGGCATATTTCTTTTTAGTAGATTGATTTGTCGATCTATGCTTATAACTAATTGAGCAAAAACGATTAGTATCCCTTGTTGAACTTAATTTCTTAGCTCAAACTATCAAACTGAAGTGATTTCAAGTGAGAAAGGTCCACCACCTATTCTTGTGAATCTAATCCATCTGAAACTTTGTCAAATGTTTCGTGCTATGATATAGCTACCTTTCTCGTTGTTCCTAAGAGTCGCTTTTTTTGGTGATAATTAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAATTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAG : TGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGTATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAG : TGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG : CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG : GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</gDNA_template>
            <first_frame> L  N  *  N  M  S  N  Y  I  F  S  V  C  V  L  L  N  F  F  I  Y  K  F  F  R  A  T  C  S  L  G  I  F  L  F  S  R  L  I  C  R  S  M  L  I  T  N  *  A  K  T  I  S  I  P  C  *  T  *  F  L  S  S  N  Y  Q  T  E  V  I  S  S  E  K  G  P  P  P  I  L  V  N  L  I  H  L  K  L  C  Q  M  F  R  A  M  I  *  L  P  F  S  L  F  L  R  V  A  F  F  G  D  N  *  V  I  T  L  D  M  G  L  L  V  A  G  T  K  Y  R  G  E  F  E  E  R  L  K  K  L  M  E  E  I  K  Q  S  D  E  I  I  L  F  I  D  E  V  H  T  L  I  G  A  G  A  A  E  G  A  I  D  A  A  N  I  L  K  P  A  L  A  R  G  E  L  Q  :  C  I  G  A  T  T  L  D  E  Y  R  K  H  I  E  K  D  P  A  L  E  R  R  F  Q  P  V  K  V  P  E  P  T  V  D  E  T  I  Q  I  L  K  G  L  R  E  R  Y  E  I  H  H  K  L  R  Y  T  D  E  A  L  V  A  A  A  Q  L  S  Y  Q  Y  I  S :   D  R  F  L  P  D  K  A  I  D  L  I  D  E  A  G  S  R  V  R  L  R  H  A  Q  :  L  P  E  E  A  K  E  L  E  K  E  L  R  Q  I  T  K  E  K  N  E  A  V  R  G  Q  D  F  E  K  :  A  G  E  L  R  D  R  E  M  D  L  K  A  Q  I  T  A  L  I  D  K  N  K  E  V  S  K  A  E  S  E  A  A  D  T  G  P  L  V  T  E  A  D  I  Q  H  I  V  S  S  W  T  G  I  P  V  E  K  V  S  T  D  E  S  D  R  L  L  K  M  E  E  T  L  H  T  R  I  I  G  Q  D  E  A  V  K  A  I  S  R  A  I  R  R  A  R  V  G  L  K  N  P  N  R  P  I  A  S  F  I  F  S  G  P  T  G  V  G  K  S  E  L  A  K  A  L  A  A  Y  Y  F  G  S  E  E  A  M  I  R  L  D  M  S  E  F  M  E  R  H  T  V  S  K  L  I  G  S  P  P  G  Y  V  G  Y  T  E  G  G  Q  L  T  E  A  V  R  R  R  P  Y  T  V  V  L  F  D  E  I  E  K  A  H  P  D  V  F  N  M  M  L  Q  I  L  E  D  G  R  L  T  D  S  K  G  R  T  V  D  F  K  N  T  L  L  I  M  T  S  N  V  G  S  S  V  I  E  K  G  G  R  R  I  G  F  D  L  D  L  D  E  K  D  S  S  Y  N  R  I  K  S  L  V  T  E  E  L  K  Q  Y  F  R  P  E  F  L  N  R  L  D  E  M  I  V  F  R  Q  L  T  K  L  E  V  K  E  I  A  D  I  M  L  K  E  V  F  E  R  L  K  V  K  E  I  E  L  Q  V  T  E  R  F  R  D  R  V  V  D  E  G  Y  N  P  S  Y  G  A  R  P  L  R  R  A  I  M  R  L  L  E  D  S  M  A  E  K  M  L  A  N  E  I  K  E  G  D  S  V  I  V  D  V  D  S  D  G  N  V  T  V  L  N  G  S  S  G  T  P  S  D  P  A  P  E  P  I  P  V  *  I  R  *  S  H  F  S  S  T  V  S  V  W  S  F  K  S  S  F  V  L  A  T  K  L  C  G  A  Y  E  A  T  F  E  F  I  S  G  N  A  Q  V  N  L  A  T  S  R  R  Q  H  P  F  Y  V  D  L  *  *  F  Y  R  S  I  L  D  *  D  C  S  W  S  Q  E  S  I  V  L  T  R  H  S  L  S  K  N  I  S  S  L  L  *  A  T  V  E  S  L  S  S  Y  C  S  S  N  V  V  I  C  A  Y  L  F  S  H  Y  </first_frame>
            <second_frame>  *  I  E  I  C  Q  I  I  F  S  V  S  V  F  S  *  I  F  L  Y  I  N  S  S  V  L  L  V  L  L  A  Y  F  F  L  V  D  *  F  V  D  L  C  L  *  L  I  E  Q  K  R  L  V  S  L  V  E  L  N  F  L  A  Q  T  I  K  L  K  *  F  Q  V  R  K  V  H  H  L  F  L  *  I  *  S  I  *  N  F  V  K  C  F  V  L  *  Y  S  Y  L  S  R  C  S  *  E  S  L  F  L  V  I  I  R  *  *  L  L  I  W  D  C  L  L  L  G  Q  N  T  V  E  S  L  R  K  G  *  K  S  *  W  R  K  L  S  R  V  M  K  *  Y  Y  L  S  M  K  C  T  H  *  L  E  L  E  Q  Q  R  G  P  S  M  L  Q  T  S  *  N  L  P  *  L  E  V  N  Y  S :   V  S  E  L  L  H  W  M  N  T  E  S  I  L  R  K  I  L  H  *  R  G  D  S  N  Q  L  R  S  L  N  L  L  L  M  K  L  Y  R  F  *  K  G  F  V  R  G  M  K  F  I  T  N  F  V  T  L  T  K  P  *  W  L  L  L  S  S  H  T  S  T  S   : V  T  D  F  C  L  T  K  Q  L  I  *  L  M  K  L  V  L  V  F  D  F  A  M  L  S :   S  P  R  K  Q  K  S  S  R  K  N  F  V  R  *  Q  R  R  R  M  K  L  F  V  V  K  I  S  K  R :   L  G  N  Y  V  I  E  K  W  I  *  R  H  R  S  Q  P  S  *  T  K  T  K  R  *  A  R  L  K  V  R  L  Q  I  Q  V  H  L  *  Q  K  Q  I  F  S  T  S  S  L  L  G  L  V  S  L  L  R  R  S  P  L  T  N  L  T  V  S  *  K  W  K  K  H  F  T  H  E  S  L  A  R  M  K  L  S  K  P  L  V  A  L  F  D  V  H  E  L  G  S  R  I  P  T  D  L  L  L  V  S  S  F  P  V  P  L  V  L  G  N  Q  N  W  Q  R  H  W  L  H  I  T  L  V  L  K  K  Q  *  S  G  L  I  *  V  S  S  W  K  D  T  L  S  L  N  S  L  D  P  P  L  V  M  L  V  T  Q  R  V  V  N  *  L  K  L  L  G  V  D  L  I  Q  L  C  S  L  M  R  L  R  R  L  I  L  M  S  S  T  *  C  F  K  F  L  K  M  E  D  *  Q  T  A  R  V  E  L  *  I  S  R  T  H  F  S  S  *  H  Q  M  L  E  V  V  *  L  R  K  V  A  V  V  *  V  L  I  S  T  L  M  R  R  I  A  V  T  I  A  S  R  A  *  *  Q  K  N  *  S  S  T  S  G  Q  S  F  *  T  D  W  M  R  *  L  Y  S  V  S  S  L  S  *  R  L  R  R  *  L  I  S  C  L  R  R  S  L  R  G  *  K  L  R  R  *  N  F  K  *  Q  R  G  L  E  T  G  W  L  T  R  D  T  T  L  A  M  E  H  D  L  *  E  E  L  L  *  D  F  *  R  T  A  W  L  R  K  C  L  Q  M  R  L  K  K  V  I  Q  L  S  W  T  L  I  Q  M  A  M  *  L  S  S  M  E  V  V  V  L  P  R  I  R  L  L  S  L  S  P  F  R  S  G  D  H  I  L  A  Q  Q  S  L  C  G  L  L  R  V  H  L  C  W  P  L  S  F  V  G  L  M  K  Q  L  L  S  L  S  L  G  M  L  R  *  I  L  P  R  R  E  G  S  I  L  S  M  L  I  F  N  D  F  T  E  V  Y  W  I  K  I  V  V  G  H  K  K  V  L  Y  *  Q  D  T  P  Y  Q  K  T  Y  L  V  Y  C  R  R  Q  L  N  R  Y  P  R  I  A  H  L  M  *  L  S  A  L  T  S  F  L  I  I </second_frame>
            <third_frame>   K  L  K  Y  V  K  L  Y  F  Q  C  L  C  S  L  E  F  F  Y  I  *  I  L  P  C  Y  L  F  S  W  H  I  S  F  *  *  I  D  L  S  I  Y  A  Y  N  *  L  S  K  N  D  *  Y  P  L  L  N  L  I  S  *  L  K  L  S  N  *  S  D  F  K  *  E  R  S  T  T  Y  S  C  E  S  N  P  S  E  T  L  S  N  V  S  C  Y  D  I  A  T  F  L  V  V  P  K  S  R  F  F  W  *  *  L  G  D  N  S  *  Y  G  I  A  C  C  W  D  K  I  P  W  R  V  *  G  K  A  K  K  A  D  G  G  N  *  A  E  *  *  N  N  T  I  Y  R  *  S  A  H  I  D  W  S  W  S  S  R  G  G  H  R  C  C  K  H  L  E  T  C  P  S  S  R  *  T  T   : V  Y  R  S  Y  Y  T  G  *  I  Q  K  A  Y  *  E  R  S  C  T  R  E  E  I  P  T  S  *  G  P  *  T  Y  C  *  *  N  Y  T  D  S  E  R  A  S  *  E  V  *  N  S  S  Q  T  S  L  H  *  R  S  L  S  G  C  C  S  A  L  I  P  V  H  Q  :  *  P  I  S  A  *  Q  S  N  *  F  D  *  *  S  W  F  S  C  S  T  S  P  C  S   : A  P  R  G  S  K  R  A  R  E  R  T  S  S  D  N  K  G  E  E  *  S  C  S  W  S  R  F  R  K   : G  W  G  I  T  *  *  R  N  G  S  E  G  T  D  H  S  P  H  R  Q  K  Q  R  G  E  Q  G  *  K  *  G  C  R  Y  R  S  T  C  D  R  S  R  Y  S  A  H  R  L  F  L  D  W  Y  P  C  *  E  G  L  H  *  R  I  *  P  S  P  K  N  G  R  N  T  S  H  T  N  H  W  P  G  *  S  C  Q  S  H  *  S  R  Y  S  T  C  T  S  W  A  Q  E  S  Q  Q  T  Y  C  *  F  H  L  F  R  S  H  W  C  W  E  I  R  T  G  K  G  T  G  C  I  L  L  W  F  *  R  S  N  D  P  A  *  Y  E  *  V  H  G  K  T  H  C  L  *  T  H  W  I  P  P  W  L  C  W  L  H  R  G  W  S  I  D  *  S  C  *  A  S  T  L  Y  S  C  A  L  *  *  D  *  E  G  S  S  *  C  L  Q  H  D  A  S  N  S  *  R  W  K  I  D  R  Q  Q  G  *  N  C  R  F  Q  E  H  T  S  H  H  D  I  K  C  W  K  *  C  N  *  E  R  W  P  S  Y  R  F  *  S  R  P  *  *  E  G  *  Q  L  Q  S  H  Q  E  L  S  D  R  R  I  E  A  V  L  Q  A  R  V  F  E  Q  I  G  *  D  D  C  I  P  S  A  H  *  V  R  G  *  G  D  S  *  Y  H  A  *  G  G  L  *  E  V  E  S  *  G  D  R  T  S  S  D  R  E  V  *  R  Q  G  G  *  R  G  I  Q  P  *  L  W  S  T  T  S  E  K  S  Y  Y  E  T  F  R  G  Q  H  G  *  E  N  A  C  K  *  D  *  R  R  *  F  S  Y  R  G  R  *  F  R  W  Q  C  D  C  P  Q  W  K  *  W  Y  S  L  G  S  G  S  *  A  Y  P  R  L  D  Q  V  I  T  F  *  L  N  S  L  C  V  V  F  *  E  F  I  C  V  G  H  *  A  L  W  G  L  *  S  N  F  *  V  Y  L  W  E  C  S  G  K  S  C  H  V  E  K  A  A  S  F  L  C  *  S  L  M  I  L  Q  K  Y  T  G  L  R  L  *  L  V  T  R  K  Y  C  I  N  K  T  L  L  I  K  K  H  I  *  F  I  V  G  D  S  *  I  V  I  L  V  L  L  I  *  C  S  Y  L  R  L  P  L  F  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14494" stop="14279"/>
                    <exon start="14067" stop="13850"/>
                    <exon start="13534" stop="13459"/>
                    <exon start="13374" stop="13285"/>
                    <exon start="13158" stop="11977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13539" e_stop="13459"/>
            <exon e_start="13374" e_stop="13285"/>
            <exon e_start="13158" e_stop="11628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="0.975"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="13539" e_stop="13459" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="13458" i_stop="13375" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13374" e_stop="13285" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13284" i_stop="13159" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13158" e_stop="11628" e_length="1531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13539" stop="13459"/>
              <exon start="13374" stop="13285"/>
              <exon start="13158" stop="12661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13368" stop="13285"/>
              <exon start="13158" stop="12674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13360" stop="13285"/>
              <exon start="13158" stop="12792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13358" stop="13285"/>
              <exon start="13158" stop="12418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13285"/>
              <exon start="13158" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13341" stop="13285"/>
              <exon start="13158" stop="12767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13334" stop="13285"/>
              <exon start="13158" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13314" stop="13285"/>
              <exon start="13158" stop="12682"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E617169" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E234573" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTGACCGATTTCTGCCTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAG : CTCCCCGAGGAAGCAAAAGAGCTCGAGAAAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAG : GCTGGGGAATTACGTGATAGAGAAATGGATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCAAGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGATAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTATTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATTTTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGGATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTGAATCGTTATCCTCGTATTGCTCATCTAATGTAGTTATCTGCGCTTACCTCTTTTCTCATTATT</gDNA_template>
            <first_frame> F  S  D  R  F  L  P  D  K  A  I  D  L  I  D  E  A  G  S  R  V  R  L  R  H  A  Q  :  L  P  E  E  A  K  E  L  E  K  E  L  R  Q  I  T  K  E  K  N  E  A  V  R  G  Q  D  F  E  K  :  A  G  E  L  R  D  R  E  M  D  L  K  A  Q  I  T  A  L  I  D  K  N  K  E  V  S  K  A  E  S  E  A  A  D  T  G  P  L  V  T  E  A  D  I  Q  H  I  V  S  S  W  T  G  I  P  V  E  K  V  S  T  D  E  S  D  R  L  L  K  M  E  E  T  L  H  T  R  I  I  G  Q  D  E  A  V  K  A  I  S  R  A  I  R  R  A  R  V  G  L  K  N  P  N  R  P  I  A  S  F  I  F  S  G  P  T  G  V  G  K  S  E  L  A  K  A  L  A  A  Y  Y  F  G  S  E  E  A  M  I  R  L  D  M  S  E  F  M  E  R  H  T  V  S  K  L  I  G  S  P  P  G  Y  V  G  Y  T  E  G  G  Q  L  T  E  A  V  R  R  R  P  Y  T  V  V  L  F  D  E  I  E  K  A  H  P  D  V  F  N  M  M  L  Q  I  L  E  D  G  R  L  T  D  S  K  G  R  T  V  D  F  K  N  T  L  L  I  M  T  S  N  V  G  S  S  V  I  E  K  G  G  R  R  I  G  F  D  L  D  L  D  E  K  D  S  S  Y  N  R  I  K  S  L  V  T  E  E  L  K  Q  Y  F  R  P  E  F  L  N  R  L  D  E  M  I  V  F  R  Q  L  T  K  L  E  V  K  E  I  A  D  I  M  L  K  E  V  F  E  R  L  K  V  K  E  I  E  L  Q  V  T  E  R  F  R  D  R  V  V  D  E  G  Y  N  P  S  Y  G  A  R  P  L  R  R  A  I  M  R  L  L  E  D  S  M  A  E  K  M  L  A  N  E  I  K  E  G  D  S  V  I  V  D  V  D  S  D  G  N  V  T  V  L  N  G  S  S  G  T  P  S  D  P  A  P  E  P  I  P  V  *  I  R  *  S  H  F  S  S  T  V  S  V  W  S  F  K  S  S  F  V  L  A  T  K  L  C  G  A  Y  E  A  T  F  E  F  I  S  G  N  A  Q  V  N  L  A  T  S  R  R  Q  H  P  F  Y  V  D  L  *  *  F  Y  R  S  I  L  D  *  D  C  S  W  S  Q  E  S  I  V  L  T  R  H  S  L  S  K  N  I  S  S  L  L  *  A  T  V  E  S  L  S  S  Y  C  S  S  N  V  V  I  C  A  Y  L  F  S  H  Y  </first_frame>
            <second_frame>  S  V  T  D  F  C  L  T  K  Q  L  I  *  L  M  K  L  V  L  V  F  D  F  A  M  L  S :   S  P  R  K  Q  K  S  S  R  K  N  F  V  R  *  Q  R  R  R  M  K  L  F  V  V  K  I  S  K  R :   L  G  N  Y  V  I  E  K  W  I  *  R  H  R  S  Q  P  S  *  T  K  T  K  R  *  A  R  L  K  V  R  L  Q  I  Q  V  H  L  *  Q  K  Q  I  F  S  T  S  S  L  L  G  L  V  S  L  L  R  R  S  P  L  T  N  L  T  V  S  *  K  W  K  K  H  F  T  H  E  S  L  A  R  M  K  L  S  K  P  L  V  A  L  F  D  V  H  E  L  G  S  R  I  P  T  D  L  L  L  V  S  S  F  P  V  P  L  V  L  G  N  Q  N  W  Q  R  H  W  L  H  I  T  L  V  L  K  K  Q  *  S  G  L  I  *  V  S  S  W  K  D  T  L  S  L  N  S  L  D  P  P  L  V  M  L  V  T  Q  R  V  V  N  *  L  K  L  L  G  V  D  L  I  Q  L  C  S  L  M  R  L  R  R  L  I  L  M  S  S  T  *  C  F  K  F  L  K  M  E  D  *  Q  T  A  R  V  E  L  *  I  S  R  T  H  F  S  S  *  H  Q  M  L  E  V  V  *  L  R  K  V  A  V  V  *  V  L  I  S  T  L  M  R  R  I  A  V  T  I  A  S  R  A  *  *  Q  K  N  *  S  S  T  S  G  Q  S  F  *  T  D  W  M  R  *  L  Y  S  V  S  S  L  S  *  R  L  R  R  *  L  I  S  C  L  R  R  S  L  R  G  *  K  L  R  R  *  N  F  K  *  Q  R  G  L  E  T  G  W  L  T  R  D  T  T  L  A  M  E  H  D  L  *  E  E  L  L  *  D  F  *  R  T  A  W  L  R  K  C  L  Q  M  R  L  K  K  V  I  Q  L  S  W  T  L  I  Q  M  A  M  *  L  S  S  M  E  V  V  V  L  P  R  I  R  L  L  S  L  S  P  F  R  S  G  D  H  I  L  A  Q  Q  S  L  C  G  L  L  R  V  H  L  C  W  P  L  S  F  V  G  L  M  K  Q  L  L  S  L  S  L  G  M  L  R  *  I  L  P  R  R  E  G  S  I  L  S  M  L  I  F  N  D  F  T  E  V  Y  W  I  K  I  V  V  G  H  K  K  V  L  Y  *  Q  D  T  P  Y  Q  K  T  Y  L  V  Y  C  R  R  Q  L  N  R  Y  P  R  I  A  H  L  M  *  L  S  A  L  T  S  F  L  I  I </second_frame>
            <third_frame>   Q  *  P  I  S  A  *  Q  S  N  *  F  D  *  *  S  W  F  S  C  S  T  S  P  C  S   : A  P  R  G  S  K  R  A  R  E  R  T  S  S  D  N  K  G  E  E  *  S  C  S  W  S  R  F  R  K   : G  W  G  I  T  *  *  R  N  G  S  E  G  T  D  H  S  P  H  R  Q  K  Q  R  G  E  Q  G  *  K  *  G  C  R  Y  R  S  T  C  D  R  S  R  Y  S  A  H  R  L  F  L  D  W  Y  P  C  *  E  G  L  H  *  R  I  *  P  S  P  K  N  G  R  N  T  S  H  T  N  H  W  P  G  *  S  C  Q  S  H  *  S  R  Y  S  T  C  T  S  W  A  Q  E  S  Q  Q  T  Y  C  *  F  H  L  F  R  S  H  W  C  W  E  I  R  T  G  K  G  T  G  C  I  L  L  W  F  *  R  S  N  D  P  A  *  Y  E  *  V  H  G  K  T  H  C  L  *  T  H  W  I  P  P  W  L  C  W  L  H  R  G  W  S  I  D  *  S  C  *  A  S  T  L  Y  S  C  A  L  *  *  D  *  E  G  S  S  *  C  L  Q  H  D  A  S  N  S  *  R  W  K  I  D  R  Q  Q  G  *  N  C  R  F  Q  E  H  T  S  H  H  D  I  K  C  W  K  *  C  N  *  E  R  W  P  S  Y  R  F  *  S  R  P  *  *  E  G  *  Q  L  Q  S  H  Q  E  L  S  D  R  R  I  E  A  V  L  Q  A  R  V  F  E  Q  I  G  *  D  D  C  I  P  S  A  H  *  V  R  G  *  G  D  S  *  Y  H  A  *  G  G  L  *  E  V  E  S  *  G  D  R  T  S  S  D  R  E  V  *  R  Q  G  G  *  R  G  I  Q  P  *  L  W  S  T  T  S  E  K  S  Y  Y  E  T  F  R  G  Q  H  G  *  E  N  A  C  K  *  D  *  R  R  *  F  S  Y  R  G  R  *  F  R  W  Q  C  D  C  P  Q  W  K  *  W  Y  S  L  G  S  G  S  *  A  Y  P  R  L  D  Q  V  I  T  F  *  L  N  S  L  C  V  V  F  *  E  F  I  C  V  G  H  *  A  L  W  G  L  *  S  N  F  *  V  Y  L  W  E  C  S  G  K  S  C  H  V  E  K  A  A  S  F  L  C  *  S  L  M  I  L  Q  K  Y  T  G  L  R  L  *  L  V  T  R  K  Y  C  I  N  K  T  L  L  I  K  K  H  I  *  F  I  V  G  D  S  *  I  V  I  L  V  L  L  I  *  C  S  Y  L  R  L  P  L  F  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13539" stop="13459"/>
                    <exon start="13374" stop="13285"/>
                    <exon start="13158" stop="11977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17546" e_stop="17025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="17546" e_stop="17025" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17546" stop="17025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAACCAAAAGAGAACAATTGGATCAAGCTTCTGTAGCCCAAAGTTTTGTCCTTTCACTTCTTGTCTACTCCTCATACTGTCTCTTCCAAATTCAACAGTTGCCACTGTCGATTTTTCAGCAGTAAATTTACCTTGCTCAATATCAACTCCCCATAGCCCACCCAAACTTCTCTTCATTTTTATAATAATGACGTTGCATGTTTCATACCTCGCCTAGGAATGTGTCTACTGAATCCTGTCATTTGCTACATCATATCTTGTTCTTGTTCTTCACTCTTTTTCCTTTTCTTTCCTGTACTCTCGTTCGTGTTGTTAGGATTTTGTACTGAAACCGTTGGGTTATCAGTTTTACAGACCTTTAAGCAGTCTCTCTAGGGTTTACTAAGAGCTGGAAATTTGAATAATCTGATCAAAATTGCTGAGGTTCTTTTAATCCTTCTAAAGATCTCTGTAGCAGAGTGGTGAAAGCGGAACAGGGGGGAATACTCGGTACAAATGGTGTTGTGTTCAATTGCAAAG</gDNA_template>
            <first_frame> T  K  P  K  E  N  N  W  I  K  L  L  *  P  K  V  L  S  F  H  F  L  S  T  P  H  T  V  S  S  K  F  N  S  C  H  C  R  F  F  S  S  K  F  T  L  L  N  I  N  S  P  *  P  T  Q  T  S  L  H  F  Y  N  N  D  V  A  C  F  I  P  R  L  G  M  C  L  L  N  P  V  I  C  Y  I  I  S  C  S  C  S  S  L  F  F  L  F  F  P  V  L  S  F  V  L  L  G  F  C  T  E  T  V  G  L  S  V  L  Q  T  F  K  Q  S  L  *  G  L  L  R  A  G  N  L  N  N  L  I  K  I  A  E  V  L  L  I  L  L  K  I  S  V  A  E  W  *  K  R  N  R  G  E  Y  S  V  Q  M  V  L  C  S  I  A  K </first_frame>
            <second_frame>  L  N  Q  K  R  T  I  G  S  S  F  C  S  P  K  F  C  P  F  T  S  C  L  L  L  I  L  S  L  P  N  S  T  V  A  T  V  D  F  S  A  V  N  L  P  C  S  I  S  T  P  H  S  P  P  K  L  L  F  I  F  I  I  M  T  L  H  V  S  Y  L  A  *  E  C  V  Y  *  I  L  S  F  A  T  S  Y  L  V  L  V  L  H  S  F  S  F  S  F  L  Y  S  R  S  C  C  *  D  F  V  L  K  P  L  G  Y  Q  F  Y  R  P  L  S  S  L  S  R  V  Y  *  E  L  E  I  *  I  I  *  S  K  L  L  R  F  F  *  S  F  *  R  S  L  *  Q  S  G  E  S  G  T  G  G  N  T  R  Y  K  W  C  C  V  Q  L  Q   </second_frame>
            <third_frame>   *  T  K  R  E  Q  L  D  Q  A  S  V  A  Q  S  F  V  L  S  L  L  V  Y  S  S  Y  C  L  F  Q  I  Q  Q  L  P  L  S  I  F  Q  Q  *  I  Y  L  A  Q  Y  Q  L  P  I  A  H  P  N  F  S  S  F  L  *  *  *  R  C  M  F  H  T  S  P  R  N  V  S  T  E  S  C  H  L  L  H  H  I  L  F  L  F  F  T  L  F  P  F  L  S  C  T  L  V  R  V  V  R  I  L  Y  *  N  R  W  V  I  S  F  T  D  L  *  A  V  S  L  G  F  T  K  S  W  K  F  E  *  S  D  Q  N  C  *  G  S  F  N  P  S  K  D  L  C  S  R  V  V  K  A  E  Q  G  G  I  L  G  T  N  G  V  V  F  N  C  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17387" stop="17169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTQTSLHFYNNDVACFIPRLGMCLLNPVICYIISCSCSSLFFLFFPVLSFVLLGFCTETVGLSVLQTFKQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17545" stop="17327"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNQKRTIGSSFCSPKFCPFTSCLLLILSLPNSTVATVDFSAVNLPCSISTPHSPPKLLFIFIIMTLHVSYLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="59260" PGL_stop="51589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59260" e_stop="59126"/>
            <exon e_start="59041" e_stop="58941"/>
            <exon e_start="57267" e_stop="57123"/>
            <exon e_start="57047" e_stop="56958"/>
            <exon e_start="56871" e_stop="56583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59260" e_stop="59126" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59041" e_stop="58941" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57267" e_stop="57123" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57047" e_stop="56958" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56871" e_stop="56583" e_length="289"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59206" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59205" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59204" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59203" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59199" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59196" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596080" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59192" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429513" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601026" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="57002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59189" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587664" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59168" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59165" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59165" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59164" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59154" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59038" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59026" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59012" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59010" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59004" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59001" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58986" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58986" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58974" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58961" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58953" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57216" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57212" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57181" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57178" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57169" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57165" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57157" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288347" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57139" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57045" stop="56958"/>
              <exon start="56871" stop="56694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57040" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCACTCAGTCTCCTCCTCCTCTGCAAATTAGGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG : GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAAATAGCAGCTG</gDNA_template>
            <first_frame> P  H  S  V  S  S  S  S  A  N  *  G  L  A  S  L  A  V  S  *  S  S  L  V  T  I  N  H  G  G  T  D  G  E  G  V  F  E  A  A  R  C  V  S  K  :  L  *  E  D  R  E  G  K  E  A  R  *  G  R  Q  S  I  L  Q  E  Y  W  L  R  I  *  D  S  S  *  G  Y  *  R :   Y  V  Y  *  Q  E  M  P  I  H  W  *  C  F  Y  S  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  R  S  S  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  A  L  Q  Y  S  S  S  H  I  T  V  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  R  E  V  Q  C  L  E  G  D  S  G  W  F  W  W  W  R  E  E  S  F  H  W  N  V  M  C  F  S  I  S  N  F  V  S  C  R  N  I  M  S  K  R  F  Y  V  L  L  S  C  F  F  K  F  *  T  *  C  *  *  V  M  F  Y  *  A  S  E  L  A  F  K  M  L  F  D  *  T  F  I  *  K  G  Y  *  V  I  K  I  A  A  </first_frame>
            <second_frame>  L  T  Q  S  P  P  P  L  Q  I  R  V  W  H  L  S  P  S  V  D  L  P  *  *  Q  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  G  G  K  K  A  F  T  G  M  *  C  V  F  P  F  Q  I  L  F  L  V  G  I  L  C  Q  N  V  S  T  F  Y  *  V  V  S  S  N  F  E  L  N  V  S  K  L  C  F  I  K  P  L  N  *  L  L  K  C  C  L  I  E  L  L  Y  K  K  D  I  R  *  L  K  *  Q  L </second_frame>
            <third_frame>   S  L  S  L  L  L  L  C  K  L  G  F  G  I  S  R  R  Q  L  I  F  L  S  N  N  Q  S  W  R  N  R  R  R  R  R  F  *  S  S  Q  V  C  F  *   : A  L  R  R  P  G  R  E  R  G  Q  V  R  E  A  I  D  T  S  R  V  L  A  *  D  L  R  L  L  V  R  L  L  K  :  V  R  I  L  T  R  N  A  H  S  L  V  M  F  L  F  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  S  F  V  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  G  T  P  I  F  Q  L  T  Y  H  R  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  P  *  G  S  M  S  *  R  *  F  R  L  V  L  V  V  A  G  R  K  L  S  L  E  C  N  V  F  F  H  F  K  F  C  F  L  *  E  Y  Y  V  K  T  F  L  R  F  T  E  L  F  L  Q  I  L  N  L  M  L  V  S  Y  V  L  L  S  L  *  T  S  F  *  N  V  V  *  L  N  F  Y  I  K  R  I  L  G  D  *  N  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59187" stop="59126"/>
                    <exon start="59041" stop="58941"/>
                    <exon start="57267" stop="57123"/>
                    <exon start="57047" stop="56958"/>
                    <exon start="56871" stop="56781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGGGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59228" e_stop="59126"/>
            <exon e_start="59041" e_stop="58941"/>
            <exon e_start="57267" e_stop="57123"/>
            <exon e_start="57047" e_stop="56958"/>
            <exon e_start="56871" e_stop="56785"/>
            <exon e_start="55686" e_stop="55663"/>
            <exon e_start="55150" e_stop="55113"/>
            <exon e_start="55039" e_stop="54973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.205" acc_prob="0.956" e_score="0.583"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.632"/>
          <exon-only e_score="0.821"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59228" e_stop="59126" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59041" e_stop="58941" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57267" e_stop="57123" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57047" e_stop="56958" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56871" e_stop="56785" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56784" i_stop="55687" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="0.583">
            <gDNA_exon_boundary e_start="55686" e_stop="55663" e_length="24"/>
          </exon>
          <intron i_serial="6" don_prob="0.205" acc_prob="0.956">
            <gDNA_intron_boundary i_start="55662" i_stop="55151" i_length="512"/>
          </intron>
          <exon e_serial="7" e_score="0.632">
            <gDNA_exon_boundary e_start="55150" e_stop="55113" e_length="38"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55112" i_stop="55040" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.821">
            <gDNA_exon_boundary e_start="55039" e_stop="54973" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59228" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59228" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59226" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59225" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59224" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59224" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59223" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59222" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59220" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59220" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="57016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59214" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59214" stop="59126"/>
              <exon start="59041" stop="58977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59210" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59204" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="57002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59168" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59136" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
              <exon start="55686" stop="55663"/>
              <exon start="55150" stop="55113"/>
              <exon start="55039" stop="54973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59026" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58961" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57248" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
              <exon start="55686" stop="55663"/>
              <exon start="55150" stop="55113"/>
              <exon start="55039" stop="54973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57169" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG : GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT : TGGAAGCAATTTTTTTTCTGCTTT : GATGTTTAATGTCTTGAAGGTGATTTTAATCGGCTTTG : TTGCTTTTCTTGAATTCTAGTCTTCATAGATATTCCTCTGAGCTTCAAATTTTAAAACTTAATGCTA</gDNA_template>
            <first_frame> G  F  G  I  S  R  R  Q  L  I  F  L  S  N  N  Q  S  W  R  N  R  R  R  R  R  F  *  S  S  Q  V  C  F  *   : A  L  R  R  P  G  R  E  R  G  Q  V  R  E  A  I  D  T  S  R  V  L  A  *  D  L  R  L  L  V  R  L  L  K  :  V  R  I  L  T  R  N  A  H  S  L  V  M  F  L  F  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  S  F  V  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  G  T  P  I  F  Q  L  T  Y  H  R  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  P  *  G  S  M  S  *  R  *  F  R  L  V  L  V  V  A  G  R  K  L  S  L  E   : L  E  A  I  F  F  L  L   : *  C  L  M  S  *  R  *  F  *  S  A  L  :  L  L  F  L  N  S  S  L  H  R  Y  S  S  E  L  Q  I  L  K  L  N  A  </first_frame>
            <second_frame>  G  L  A  S  L  A  V  S  *  S  S  L  V  T  I  N  H  G  G  T  D  G  E  G  V  F  E  A  A  R  C  V  S  K  :  L  *  E  D  R  E  G  K  E  A  R  *  G  R  Q  S  I  L  Q  E  Y  W  L  R  I  *  D  S  S  *  G  Y  *  R :   Y  V  Y  *  Q  E  M  P  I  H  W  *  C  F  Y  S  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  R  S  S  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  A  L  Q  Y  S  S  S  H  I  T  V  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  R  E  V  Q  C  L  E  G  D  S  G  W  F  W  W  W  R  E  E  S  F  H  W  N  :  W  K  Q  F  F  F  C  F  :  D  V  *  C  L  E  G  D  F  N  R  L  C :   C  F  S  *  I  L  V  F  I  D  I  P  L  S  F  K  F  *  N  L  M  L </second_frame>
            <third_frame>   V  W  H  L  S  P  S  V  D  L  P  *  *  Q  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  G  G  K  K  A  F  T  G  I :   G  S  N  F  F  S  A  L :   M  F  N  V  L  K  V  I  L  I  G  F   : V  A  F  L  E  F  *  S  S  *  I  F  L  *  A  S  N  F  K  T  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59187" stop="59126"/>
                    <exon start="59041" stop="58941"/>
                    <exon start="57267" stop="57123"/>
                    <exon start="57047" stop="56958"/>
                    <exon start="56871" stop="56785"/>
                    <exon start="55686" stop="55663"/>
                    <exon start="55150" stop="55113"/>
                    <exon start="55039" stop="55020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGGGKKAFTGIGSNFFSALMFNVLKVILIGFVAFLEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59228" e_stop="59126"/>
            <exon e_start="59041" e_stop="58941"/>
            <exon e_start="57267" e_stop="57123"/>
            <exon e_start="57047" e_stop="56958"/>
            <exon e_start="56871" e_stop="56785"/>
            <exon e_start="55686" e_stop="55663"/>
            <exon e_start="55150" e_stop="55113"/>
            <exon e_start="55039" e_stop="54974"/>
            <exon e_start="51685" e_stop="51589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.205" acc_prob="0.956" e_score="0.583"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.632"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.818"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59228" e_stop="59126" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59125" i_stop="59042" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59041" e_stop="58941" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57267" e_stop="57123" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57047" e_stop="56958" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56871" e_stop="56785" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56784" i_stop="55687" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="0.583">
            <gDNA_exon_boundary e_start="55686" e_stop="55663" e_length="24"/>
          </exon>
          <intron i_serial="6" don_prob="0.205" acc_prob="0.956">
            <gDNA_intron_boundary i_start="55662" i_stop="55151" i_length="512"/>
          </intron>
          <exon e_serial="7" e_score="0.632">
            <gDNA_exon_boundary e_start="55150" e_stop="55113" e_length="38"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55112" i_stop="55040" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.818">
            <gDNA_exon_boundary e_start="55039" e_stop="54974" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54973" i_stop="51686" i_length="3288"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="51685" e_stop="51589" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59228" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59228" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59226" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59225" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59224" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59224" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59223" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59222" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59220" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59220" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="57016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59214" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59214" stop="59126"/>
              <exon start="59041" stop="58977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59212" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59210" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59204" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
              <exon start="55686" stop="55663"/>
              <exon start="55150" stop="55113"/>
              <exon start="55039" stop="54974"/>
              <exon start="51685" stop="51589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="57002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59168" stop="59126"/>
              <exon start="59041" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59026" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58961" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57169" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTTGGCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG : GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT : TGGAAGCAATTTTTTTTCTGCTTT : GATGTTTAATGTCTTGAAGGTGATTTTAATCGGCTTTG : TTGCTTTTCTTGAATTCTAGTCTTCATAGATATTCCTCTGAGCTTCAAATTTTAAAACTTAATGCT : AGAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> G  F  G  I  S  R  R  Q  L  I  F  L  S  N  N  Q  S  W  R  N  R  R  R  R  R  F  *  S  S  Q  V  C  F  *   : A  L  R  R  P  G  R  E  R  G  Q  V  R  E  A  I  D  T  S  R  V  L  A  *  D  L  R  L  L  V  R  L  L  K  :  V  R  I  L  T  R  N  A  H  S  L  V  M  F  L  F  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  S  F  V  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  G  T  P  I  F  Q  L  T  Y  H  R  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  P  *  G  S  M  S  *  R  *  F  R  L  V  L  V  V  A  G  R  K  L  S  L  E   : L  E  A  I  F  F  L  L   : *  C  L  M  S  *  R  *  F  *  S  A  L  :  L  L  F  L  N  S  S  L  H  R  Y  S  S  E  L  Q  I  L  K  L  N  A  :  R  N  D  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  G  L  A  S  L  A  V  S  *  S  S  L  V  T  I  N  H  G  G  T  D  G  E  G  V  F  E  A  A  R  C  V  S  K  :  L  *  E  D  R  E  G  K  E  A  R  *  G  R  Q  S  I  L  Q  E  Y  W  L  R  I  *  D  S  S  *  G  Y  *  R :   Y  V  Y  *  Q  E  M  P  I  H  W  *  C  F  Y  S  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  R  S  S  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  A  L  Q  Y  S  S  S  H  I  T  V  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  R  E  V  Q  C  L  E  G  D  S  G  W  F  W  W  W  R  E  E  S  F  H  W  N  :  W  K  Q  F  F  F  C  F  :  D  V  *  C  L  E  G  D  F  N  R  L  C :   C  F  S  *  I  L  V  F  I  D  I  P  L  S  F  K  F  *  N  L  M  L :   E  M  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   V  W  H  L  S  P  S  V  D  L  P  *  *  Q  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  G  G  K  K  A  F  T  G  I :   G  S  N  F  F  S  A  L :   M  F  N  V  L  K  V  I  L  I  G  F   : V  A  F  L  E  F  *  S  S  *  I  F  L  *  A  S  N  F  K  T  *  C   : *  K  *  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59187" stop="59126"/>
                    <exon start="59041" stop="58941"/>
                    <exon start="57267" stop="57123"/>
                    <exon start="57047" stop="56958"/>
                    <exon start="56871" stop="56785"/>
                    <exon start="55686" stop="55663"/>
                    <exon start="55150" stop="55113"/>
                    <exon start="55039" stop="55020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGGGKKAFTGIGSNFFSALMFNVLKVILIGFVAFLEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="59221" e_stop="58941"/>
            <exon e_start="57267" e_stop="57123"/>
            <exon e_start="57047" e_stop="56958"/>
            <exon e_start="56871" e_stop="56593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.982"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="59221" e_stop="58941" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="58940" i_stop="57268" i_length="1673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57267" e_stop="57123" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="57122" i_stop="57048" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57047" e_stop="56958" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56957" i_stop="56872" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56871" e_stop="56593" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59038" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59026" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59012" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59010" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59004" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59001" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58986" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58986" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58974" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58961" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58953" stop="58941"/>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57267" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57216" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57212" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57181" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57178" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57169" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57165" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57157" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288347" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57139" stop="57123"/>
              <exon start="57047" stop="56958"/>
              <exon start="56871" stop="56651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57045" stop="56958"/>
              <exon start="56871" stop="56694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57040" stop="56958"/>
              <exon start="56871" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATCTCTCGCCGTCAGTTGATCTTCCTTAGTAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAGGTTAGTAATCTGAGCAACCTGTTAAAGTTCGTAACTTGGGGAGATATTTTAGCCTAAGATTTGCGTTTTTTCTGATACCGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG : GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAGGTGATTAAA</gDNA_template>
            <first_frame> A  S  L  A  V  S  *  S  S  L  V  T  I  N  H  G  G  T  D  G  E  G  V  F  E  A  A  R  C  V  S  K  V  S  N  L  S  N  L  L  K  F  V  T  W  G  D  I  L  A  *  D  L  R  F  F  *  Y  R  Q  L  *  E  D  R  E  G  K  E  A  R  *  G  R  Q  S  I  L  Q  E  Y  W  L  R  I  *  D  S  S  *  G  Y  *  R :   Y  V  Y  *  Q  E  M  P  I  H  W  *  C  F  Y  S  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  R  S  S  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  A  L  Q  Y  S  S  S  H  I  T  V  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  R  E  V  Q  C  L  E  G  D  S  G  W  F  W  W  W  R  E  E  S  F  H  W  N  V  M  C  F  S  I  S  N  F  V  S  C  R  N  I  M  S  K  R  F  Y  V  L  L  S  C  F  F  K  F  *  T  *  C  *  *  V  M  F  Y  *  A  S  E  L  A  F  K  M  L  F  D  *  T  F  I  *  K  G  Y  *  V  I  K </first_frame>
            <second_frame>  H  L  S  P  S  V  D  L  P  *  *  Q  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  R  L  V  I  *  A  T  C  *  S  S  *  L  G  E  I  F  *  P  K  I  C  V  F  S  D  T  G  S  S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  G  G  K  K  A  F  T  G  M  *  C  V  F  P  F  Q  I  L  F  L  V  G  I  L  C  Q  N  V  S  T  F  Y  *  V  V  S  S  N  F  E  L  N  V  S  K  L  C  F  I  K  P  L  N  *  L  L  K  C  C  L  I  E  L  L  Y  K  K  D  I  R  *  L   </second_frame>
            <third_frame>   I  S  R  R  Q  L  I  F  L  S  N  N  Q  S  W  R  N  R  R  R  R  R  F  *  S  S  Q  V  C  F  *  G  *  *  S  E  Q  P  V  K  V  R  N  L  G  R  Y  F  S  L  R  F  A  F  F  L  I  P  A  A  L  R  R  P  G  R  E  R  G  Q  V  R  E  A  I  D  T  S  R  V  L  A  *  D  L  R  L  L  V  R  L  L  K  :  V  R  I  L  T  R  N  A  H  S  L  V  M  F  L  F  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  S  F  V  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  G  T  P  I  F  Q  L  T  Y  H  R  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  P  *  G  S  M  S  *  R  *  F  R  L  V  L  V  V  A  G  R  K  L  S  L  E  C  N  V  F  F  H  F  K  F  C  F  L  *  E  Y  Y  V  K  T  F  L  R  F  T  E  L  F  L  Q  I  L  N  L  M  L  V  S  Y  V  L  L  S  L  *  T  S  F  *  N  V  V  *  L  N  F  Y  I  K  R  I  L  G  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012A08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59073" stop="58941"/>
                    <exon start="57267" stop="57123"/>
                    <exon start="57047" stop="56958"/>
                    <exon start="56871" stop="56781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKICVFSDTGSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGGGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="59005" PGL_stop="59221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59005" e_stop="59221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="59005" e_stop="59221" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59005" stop="59221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTACCTGGCCTCTTTCCCTTCCCGGTCTTCTTAGAGCTGCCGGTATCAGAAAAAACGCAAATCTTAGGCTAAAATATCTCCCCAAGTTACGAACTTTAACAGGTTGCTCAGATTACTAACCTTAGAAACACACCTGGCTGCTTCAAAAACGCCTTCTCCGTCTGTTCCGCCATGATTGATTGTTACTAAGGAAGATCAACTGACGGCGAGAGATGC</gDNA_template>
            <first_frame> L  T  W  P  L  S  L  P  G  L  L  R  A  A  G  I  R  K  N  A  N  L  R  L  K  Y  L  P  K  L  R  T  L  T  G  C  S  D  Y  *  P  *  K  H  T  W  L  L  Q  K  R  L  L  R  L  F  R  H  D  *  L  L  L  R  K  I  N  *  R  R  E  M  </first_frame>
            <second_frame>  L  P  G  L  F  P  F  P  V  F  L  E  L  P  V  S  E  K  T  Q  I  L  G  *  N  I  S  P  S  Y  E  L  *  Q  V  A  Q  I  T  N  L  R  N  T  P  G  C  F  K  N  A  F  S  V  C  S  A  M  I  D  C  Y  *  G  R  S  T  D  G  E  R  C </second_frame>
            <third_frame>   Y  L  A  S  F  P  S  R  S  S  *  S  C  R  Y  Q  K  K  R  K  S  *  A  K  I  S  P  Q  V  T  N  F  N  R  L  L  R  L  L  T  L  E  T  H  L  A  A  S  K  T  P  S  P  S  V  P  P  *  L  I  V  T  K  E  D  Q  L  T  A  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0012A08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 559 chains have been computed
$ 
$ memory statistics:
$ 882016 bytes spliced alignments in total
$ 312 spliced alignments have been stored
$ 2826 bytes was the average size of a spliced alignment
$ 18784 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 4696 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 616 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:33:04
-->
