<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:28:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7046-3" ref_strand="+" ref_description="SGN-M7046-3 C2_At1g73885-3 [cosii_markers]">
      <seq>caacaatggctctcacaggaaatcgaattctctgcaacagcgcatcaacaaaaataccgtttacccaattccctcttcgccgtcccttcttacttccctctcaggggagaagaagtcaattcactgtattggctgcaaagaagttcacttcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattggtagtgaagatagggtttctgcaactacaacaactggtgatgcttttgtgattccgaagcttcctggagaggaaactgacttttgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctaattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggcaactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcggatgtgttcgagtcaaatccaactgaagaggcacctagtttggaatagataagtttgctaagttcacttctaatgaagaattatgtcttcatattgtgataattacgggtaaaacagaagtccagctaagagcgcccaacttagattcaaagttactcttacaagctgaaatgtagacgtttttatactttgtatccatgtggaattgtagtgcaaaatatactgatgaaagtatggaagttgattctttattttcaactacaagtcaaaagaatgctcacagagtgattctcatgcaataatcgtttcatctttatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56069" stop="58556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56369" g_stop="56760" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58260" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="844" r_length="452" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-M7046-3" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7046-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56369" e_stop="56760"/>
          <exon e_start="57818" e_stop="58260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAG---------CAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGT</genome_strand>
        <mrna_strand>CAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCGCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGCCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGTATTGGCTGCAAAGAAGTTCACTTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGGTAGTGAAGATAGGGTTTCTGCAACTACAACAACTGGTGATGCTTTTGTGATTCCGAAGCTTCCTGGAGAGGAAACTGACTTTTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCAACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCGGATGTGTTCGAGTCAAATCCAACTGAAGAGGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTTCACTTCTAATGAAGAATTATGTCTTCATATTGTGATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGCGCCCAACTTAGATTCAAAGTTACTCTTACAAGCTGAAATGTAGACGTTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATGAAAGTATGGAAGTTGATTCTTTATTTTCAACTACAAGTCAAAAGAATGCTCACAGAGTGATTCTCATGCAATAATCGTTTCATCTTTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7046-2" ref_strand="+" ref_description="SGN-M7046-2 C2_At1g73885-2 [cosii_markers]">
      <seq>aatggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaactacaagtcacaagaatgttcacagagtgattctcttgcaattcttgttccatgttatacaatattgtgttagttttaagactcttgtcgccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56073" stop="58583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56373" g_stop="56760" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58283" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="854" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="882"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-M7046-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7046-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56373" e_stop="56760"/>
          <exon e_start="57818" e_stop="58283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</genome_strand>
        <mrna_strand>AATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2231" ref_strand="+" ref_description="SGN-M2231 T1734 [cos_markers]">
      <seq>tgccagcaattgttgaacttgcagaagatagacactggagggttcggcttgcaataattgagtacatacctctattggcaagtcagctgggtgttggcttttttgatgacaagcttggtgctctgtgcatgcaatggctaaaagataaggtttactctattagagatgcagcagcaaacaatgtaaagcgccttgctgaggaatttggtccaaaatgggcaatggagcatataattccacaggtgctggatatgattaatgacccacattatctttaccggatgaccatccttcatgcaatttctcttcttgcccctgtcttgggctcagaaattgcttgctccaaactcctgccggttataattactgcatcaaaagacagggtaccgaatatcaagttcaatgtggctaaggtgttgcagtctgttattccaatagttgaacaatctgttgtggagagcacaattcgaccgtgtttggttgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66174" stop="68771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66474" g_stop="66622" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66963" g_stop="67055" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="242" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67400" g_stop="67539" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="382" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67618" g_stop="67684" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="449" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67685" i_stop="68432" i_length="748">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68433" g_stop="68471" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="488" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-M2231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66474" e_stop="66622"/>
          <exon e_start="66963" e_stop="67055"/>
          <exon e_start="67400" e_stop="67539"/>
          <exon e_start="67618" e_stop="67684"/>
          <exon e_start="68433" e_stop="68471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAGGTTTGTTCAAAGCTTTCTGTTACTTGTTATTCTGCTGATAATTTAGAAAGAAAGAACTCCGAATATTCTAGTTTATGTCTGGAGAAAGTGATTGTATTCAAATGCCTGGATAAAGTGATTGTAACCAAGTAATATTCAATACAACCTTTTGAGATCATATCTGATGCTACTTCTTGTATTGGCCACTTAGTATCTTGAATATTACTTGTGCATCCTTCCTTACTTCTTTCAGGAGATACTCAAAATGAAATGATACAAATTGCATCACACTGTGCAACTCTTTGTAATGTTCTTGTATTTCTCTTTTATGTCTTCCTTATGATCATTCTTGGATTTGCAGGTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAGGTTTTCCTATTGCCTTCAATAAGCTGGTTGATAGTTGGTACTGCGATAATTTAGCAGTTTCTTCTTCAAGCCAAAAGTATTTATTTCTATTGTTATTGAATCATACATTGTTTATCACTGATTATGAAGAGATCATTTCTTTGCCTGTTCTTTAAAGAGTCATGATATGTGGAATTTCTTTTCCAGAATTAGTACATTGCTGTATGATGTTCCGGAATCAATATCTTTTATTGGACATTATCTGAATTCAGTTTTAACTATTAGAATCTTTCACATTTCTTTTGGTTGGGGGTGGGACGTCTTAGGTTTTCCTCTTCAAATAACTTGACTGATTCATTTTTCAGGTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAGGTTAATCTTCAGTATATTTAGGATTTACCATTTTGTTGGGTAATTGTTACACTTACAGGTCTAAATTTTATGTTCCAGGGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCTGTAAGTGCCAATTTACTTCTCATTGGTTTAAAGGCTGACATGTGTATATTTGTGTTTGTCATGCATTTGCTTTTATTTTTGTAAACTAGACTGTCTAATGAGCAACTCCACCTACACTAGTTAGCCTATTTGAACTCCGTATAACTAGGCCCAAGTCCAACAAAGTAGGAGAGTTGTGCTAGGTTGAAGGTAAGTATAAAATAGGCAAATTATGATGATTGTTTGTATTAACGAAATGCATTTGGTCACACTCTGCTTGGCACGAGTTACATCAGCATCCAGGTATAACAATAAATGAACGAAATGAACTCGGCCGAACAGAGCAGAATGGAAAATAAAGATTTGTATTCATAGTGTGTCTACTGGGCCTTAGTAATAATGTAATTACTAATATGTTCATGGAAGTTAGAAGTGAATGTTCGGCTTGAAATACTTGATGGAGACATTTCTTTATCATCTCATGAATTCTGTGAGATGTGTTTTTATTGCTGGAAATGTGGAAAGAACAAAAATCTGAGTGATGACTTGCCAGTCAAATATTTCACCATTTTCTTTTTATGTGAAATTCTAATCTGGTATGAAAATCTTGGTAGTGTGTGTTTAATAGTCAATTAATTTGTATTCACTGGAAATTTGTATTTTTTAGGGGGTGGAGGTAAGATTTGAAAAATGAAAAAGAAAAAGAGGAAAGAGTTTGGATCTCTAATTTATGAGTCTGTCAATATTAACCCCGAGTCTTTATGCACAGGTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</genome_strand>
        <mrna_strand>TGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG....................................................................................................................................................................................................................................................................................................................................................GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG........................................................................................................................................................................................................................................................................................................................................................GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG..............................................................................GGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="56369" PGL_stop="58283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56369" e_stop="56760"/>
            <exon e_start="57818" e_stop="58283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56369" e_stop="56760" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57818" e_stop="58283" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56369" stop="56760"/>
              <exon start="57818" stop="58260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7046-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56373" stop="56760"/>
              <exon start="57818" stop="58283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7046-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG : CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</gDNA_template>
            <first_frame> Q  Q  W  L  S  Q  E  I  E  F  S  A  T  A  H  Q  Q  K  Y  R  L  P  N  S  L  F  V  V  P  S  Y  F  P  L  R  G  E  E  V  N  S  L  H  S  L  Q  R  S  S  R  Q  G  R  T  R  E  V  Q  F  Q  L  K  S  Q  *  K  K  K  K  K  N  S  R  R  S  I  F  V  L  I  V  K  I  G  F  L  Q  P  Q  Q  L  V  M  L  L  *  C  R  S  F  L  E  R  K  L  I  S  G  K  D  L  N  G  M  D  L  D  S  L  F  S  I  C  G  L  L  A  F  S  F  R :   *  L  H  V  V  L  L  W  P  H  I  T  M  E  L  Q  I  S  R  L  L  L  C  I  R  K  Q  W  N  H  K  N  F  L  K  N  Q  R  L  L  T  Q  M  C  L  S  Q  I  Q  L  K  K  H  L  V  W  N  R  *  V  C  *  V  H  F  *  *  R  I  L  S  S  Y  C  H  N  Y  G  *  N  R  S  P  A  K  S  A  Q  L  R  F  E  A  S  *  N  V  D  I  F  I  L  C  I  H  V  E  L  *  C  K  I  Y  *  *  K  Y  G  S  *  S  F  I  F  N  Y  K  S  Q  E  C  S  Q  S  D  S  L  A  I  L  V  P  C  Y  T  I  L  C  *  F  *  D  S  C  R </first_frame>
            <second_frame>  N  N  G  S  H  R  K  S  N  S  L  Q  Q  L  I  N  K  N  T  V  Y  P  I  P  S  S  S  S  L  L  T  S  L  S  G  E  K  K  S  I  H  C  I  R  C  K  E  V  H  V  R  E  E  Q  E  K  F  N  F  N  *  R  A  S  K  R  R  R  R  R  I  P  D  D  Q  Y  S  Y  *  *  S  R  *  G  F  C  N  H  N  N  W  *  C  F  C  D  A  E  A  S  W  R  G  N  *  F  L  G  R  T  S  M  G  W  I  W  I  L  C  S  V  Y  V  G  F  W  R  S  L  F   : A  D  C  M  W  Y  C  C  G  H  I  *  R  W  S  Y  R  F  Q  G  Y  S  C  V  *  G  S  N  G  I  T  R  T  S  *  R  T  R  G  F  *  L  R  C  V  *  V  K  S  N  *  R  S  T  *  F  G  I  D  K  F  A  K  C  T  S  N  E  E  F  C  L  H  I  V  I  I  T  G  K  T  E  V  Q  L  R  V  P  N  L  D  S  K  Q  A  E  M  *  T  F  L  Y  F  V  S  M  W  N  C  S  A  K  Y  T  D  K  S  M  E  V  D  P  L  F  S  T  T  S  H  K  N  V  H  R  V  I  L  L  Q  F  L  F  H  V  I  Q  Y  C  V  S  F  K  T  L  V   </second_frame>
            <third_frame>   T  M  A  L  T  G  N  R  I  L  C  N  S  S  S  T  K  I  P  F  T  Q  F  P  L  R  R  P  F  L  L  P  S  Q  G  R  R  S  Q  F  T  A  F  A  A  K  K  F  T  S  G  K  N  K  R  S  S  I  S  T  K  E  P  V  K  E  E  E  E  E  F  Q  T  I  N  I  R  I  D  S  Q  D  R  V  S  A  T  T  T  T  G  D  A  F  V  M  P  K  L  P  G  E  E  T  D  F  W  E  G  P  Q  W  D  G  F  G  F  F  V  Q  Y  M  W  A  F  G  V  L  F  S  :  L  I  A  C  G  I  A  V  A  T  Y  N  D  G  A  T  D  F  K  A  T  P  V  Y  K  E  A  M  E  S  Q  E  L  L  E  E  P  E  A  S  N  S  D  V  F  E  S  N  P  T  E  E  A  P  S  L  E  *  I  S  L  L  S  A  L  L  M  K  N  S  V  F  I  L  S  *  L  R  V  K  Q  K  S  S  *  E  C  P  T  *  I  R  S  K  L  K  C  R  H  F  Y  T  L  Y  P  C  G  I  V  V  Q  N  I  L  I  K  V  W  K  L  I  L  Y  F  Q  L  Q  V  T  R  M  F  T  E  *  F  S  C  N  S  C  S  M  L  Y  N  I  V  L  V  L  R  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56371" stop="56760"/>
                    <exon start="57818" stop="57991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMALTGNRILCNSSSTKIPFTQFPLRRPFLLPSQGRRSQFTAFAAKKFTSGKNKRSSISTKEPVKEEEEEFQTINIRIDSQDRVSATTTTGDAFVMPKLPGEETDFWEGPQWDGFGFFVQYMWAFGVLFSLIACGIAVATYNDGATDFKATPVYKEAMESQELLEEPEASNSDVFESNPTEEAPSLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="66474" PGL_stop="68471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66474" e_stop="66622"/>
            <exon e_start="66963" e_stop="67055"/>
            <exon e_start="67400" e_stop="67539"/>
            <exon e_start="67618" e_stop="67684"/>
            <exon e_start="68433" e_stop="68471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66474" e_stop="66622" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66963" e_stop="67055" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.985">
            <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67400" e_stop="67539" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67618" e_stop="67684" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.910" acc_prob="0.925">
            <gDNA_intron_boundary i_start="67685" i_stop="68432" i_length="748"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68433" e_stop="68471" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66622"/>
              <exon start="66963" stop="67055"/>
              <exon start="67400" stop="67539"/>
              <exon start="67618" stop="67684"/>
              <exon start="68433" stop="68471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG : GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG : GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG : GGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCT : GTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</gDNA_template>
            <first_frame> C  Q  Q  L  L  N  L  Q  K  I  D  T  G  G  F  G  L  Q  *  L  S  T  Y  L  Y  W  Q  V  S  W  V  L  A  F  L  M  T  S  L  V  L  C  A  C  N  G  *  K  I  R :   F  T  L  L  E  M  Q  Q  Q  T  M  *  S  A  L  L  R  N  L  V  Q  N  G  Q  W  S  I  *  F  H  R :   C  W  I  *  L  M  T  H  I  I  F  T  G  *  P  S  F  M  Q  F  L  F  L  P  L  S  W  A  Q  K  L  L  A  P  N  S  C  R  L  *  L  L  H  Q  K  T   : G  Y  R  I  S  S  S  M  W  L  R  C  C  S  L  L  F  Q  *  L  N  N  L :   L  W  R  A  Q  F  D  R  V  W  L  N   </first_frame>
            <second_frame>  A  S  N  C  *  T  C  R  R  *  T  L  E  G  S  A  C  N  N  *  V  H  T  S  I  G  K  S  A  G  C  W  L  F  *  *  Q  A  W  C  S  V  H  A  M  A  K  R  *   : G  L  L  Y  *  R  C  S  S  K  Q  C  K  A  P  C  *  G  I  W  S  K  M  G  N  G  A  Y  N  S  T   : G  A  G  Y  D  *  *  P  T  L  S  L  P  D  D  H  P  S  C  N  F  S  S  C  P  C  L  G  L  R  N  C  L  L  Q  T  P  A  G  Y  N  Y  C  I  K  R  Q  :  G  T  E  Y  Q  V  Q  C  G  *  G  V  A  V  C  Y  S  N  S  *  T  I   : C  C  G  E  H  N  S  T  V  F  G  *  T  </second_frame>
            <third_frame>   P  A  I  V  E  L  A  E  D  R  H  W  R  V  R  L  A  I  I  E  Y  I  P  L  L  A  S  Q  L  G  V  G  F  F  D  D  K  L  G  A  L  C  M  Q  W  L  K  D  K  :  V  Y  S  I  R  D  A  A  A  N  N  V  K  R  L  A  E  E  F  G  P  K  W  A  M  E  H  I  I  P  Q  :  V  L  D  M  I  N  D  P  H  Y  L  Y  R  M  T  I  L  H  A  I  S  L  L  A  P  V  L  G  S  E  I  A  C  S  K  L  L  P  V  I  I  T  A  S  K  D  R :   V  P  N  I  K  F  N  V  A  K  V  L  Q  S  V  I  P  I  V  E  Q  S  :  V  V  E  S  T  I  R  P  C  L  V  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66476" stop="66622"/>
                    <exon start="66963" stop="67055"/>
                    <exon start="67400" stop="67539"/>
                    <exon start="67618" stop="67684"/>
                    <exon start="68433" stop="68471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPKWAMEHIIPQVLDMINDPHYLYRMTILHAISLLAPVLGSEIACSKLLPVIITASKDRVPNIKFNVAKVLQSVIPIVEQSVVESTIRPCLVEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 6584 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2194 bytes was the average size of a spliced alignment
$ 6864 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:28:44
-->
