<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:23:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538239" ref_strand="+" ref_description="SGN-E538239 [TUS-57-E21](-)">
      <seq>tgcatgttaatgttggtgacattagcaatgtgtactatagaagacgatgtaaaagattgtgcagatcaacttggagatttggcatcatgtataccatatgttagtggcacagcaaaaatgccaacaccagaatgttgtgaagatactcagaaattaaaagctgctaagccaaaatgtctctgtgttctcattaaagagagcactgatccatctttaggcttaccgattaacactactctggctcttcaaatgccagctgcttgcaaaattgatgctaaagtctctgattgcccatcattactgaagattccagcagattcaccagatgcaaagatttttaaaataactgattcagcttctaccacaaccggtacctcatcatcccctgcttcttctacttcagaaacaaagagtactacttcagatacaaagagtactactccaacaagcaccaatggagttgcaaagcagatcagcaacaacattatactgactatggcacttacagtaattgcattgatctttatttagaataatttgagcaaggctgattaattatggaaagtggaaactagctaaggatcatcactactgttagtttggtttcttagttttaacttgtttcactcttaggtcccaaataaaatatcaatttgcaataatacttgtttgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1611" stop="2971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1911" g_stop="2205" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2291" g_stop="2670" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="676" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="707"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E538239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1911" e_stop="2205"/>
          <exon e_start="2291" e_stop="2670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTTAATGTTGGTGACATTAGCAATGTGTACTATAGAAGACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCATGTAAATAACCTTTTTTTTCTACGCTGTTTGGTCAAACTTCTAAAATTAACTTAGTTTTGATGTACTTATTTGTGTTTAATTGCAGCATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGT-CCAAATAAAATATCAATTTGCAATAATACTTGTTTGATTA</genome_strand>
        <mrna_strand>TGCATGTTAATGTTGGTGACATTAGCAATGTGTACTATAGAAGACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCAT.....................................................................................CATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCCCAAATAAAATATCAATTTGCAATAATACTTGTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538979" ref_strand="+" ref_description="SGN-E538979 [TUS-58-I1]">
      <seq>tgcatgttaatgttggtgacattagcaatgtgtactatagaagacgatgtaaaagattgtgcagatcaacttggagatttggcatcatgtataccatatgttagtggcacagcaaaaatgccaacaccataatgttgtgaagatactcagaaattaaaagctgctaagccaaaatgtctctgtgttctcattaaagagagcactgatccatctttaggcttaccgattaacactactctggctcttcaaatgccagctgcttgcaaaattgatgctaaagtctctgattgcccatcattactgaagattccagcagattcaccagatgcaaagatttttaaaataactgattcaacttctaccacaaccggtacctcatcatcccctgcttcttctacttcagaaacaaagagtactacttcagatacgaagagtactactccaacaagcaccaatggagttgcaaagcagatcagcaacaacattatactgactatggcacttacagtaattgcattgatctttatttagaataatttgagcaaggctgattaattatggaaagtggaaactagctaaggatcatcactactgttagtttggtttcttagttttaacttgtttcactcttaggtccaaataaaatatcaatttgcaataatacttgtttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1611" stop="2969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1911" g_stop="2205" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2291" g_stop="2669" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="674" r_length="379" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E538979" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1911" e_stop="2205"/>
          <exon e_start="2291" e_stop="2669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTTAATGTTGGTGACATTAGCAATGTGTACTATAGAAGACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCATGTAAATAACCTTTTTTTTCTACGCTGTTTGGTCAAACTTCTAAAATTAACTTAGTTTTGATGTACTTATTTGTGTTTAATTGCAGCATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCCAAATAAAATATCAATTTGCAATAATACTTGTTTGATT</genome_strand>
        <mrna_strand>TGCATGTTAATGTTGGTGACATTAGCAATGTGTACTATAGAAGACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCATAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCAT.....................................................................................CATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAACTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACGAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCCAAATAAAATATCAATTTGCAATAATACTTGTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538977" ref_strand="+" ref_description="SGN-E538977 [TUS-58-I1](-)">
      <seq>acgatgtaaaagattctgcagatcaactgggagattgggcttcatgtatgccatatgtttgtgccacagcaaaactgccatcaccagaatgttgtgaagatactcagaaattaaaagctgctaagccaaaatgtctctgttttctcattaaagagagccctgatccatctttaggctgaccgattaactctacttgggctcttcaaatgccagctgcttgcaaaattgatgctaaagtctctaattgcccttcattcttgaagattccagcagattcaccagatgcaaagatttttaaaataactgattcagcttctaccacaaccggtacctcatcatcccctgctttttttacttcagaaacaaagagtactacttcagatacaaagagtactactccaacaagccccaatggagttgcaaagcagatcagcaacatcattatcctgactatggcacttccagtaattccattgatctttatttagaataatttgagcaaggctgattaattatggaaagtggaaactagctaaggatcatcactactgttagtttggtttcttagttttaacttgtttcactcttaggtccgaaataaaatatcaatttgcaataatacttgtttgattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1654" stop="2971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1954" g_stop="2205" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2291" g_stop="2670" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="633" r_length="381" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="664"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E538977" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1954" e_stop="2205"/>
          <exon e_start="2291" e_stop="2670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCATGTAAATAACCTTTTTTTTCTACGCTGTTTGGTCAAACTTCTAAAATTAACTTAGTTTTGATGTACTTATTTGTGTTTAATTGCAGCATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCC-AAATAAAATATCAATTTGCAATAATACTTGTTTGATTA</genome_strand>
        <mrna_strand>ACGATGTAAAAGATTCTGCAGATCAACTGGGAGATTGGGCTTCATGTATGCCATATGTTTGTGCCACAGCAAAACTGCCATCACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTTTTCTCATTAAAGAGAGCCCTGATCCATCTTTAGGCTGACCGATTAACTCTACTTGGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTAATTGCCCTT.....................................................................................CATTCTTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTTTTTTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCCCCAATGGAGTTGCAAAGCAGATCAGCAACATCATTATCCTGACTATGGCACTTCCAGTAATTCCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCCGAAATAAAATATCAATTTGCAATAATACTTGTTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265680" ref_strand="+" ref_description="SGN-E265680 [cLEI-14-L20]">
      <seq>taaaagattgtgcagatcaacttggagatttggcatcatgtataccatatgttagtggcacagcaaaaatgccaacaccagaatgttgtgaagatactcagaaattaaaagctgctaagccaaaatgtctctgtgttctcattaaagagagcactgatccatctttaggcttaccgattaacactactctggctcttcaaatgccagctgcttgcaaaattgatgctaaagtctctgattgcccatcattactgaagattccagcagattcaccagatgcaaagatttttaaaataactgattcagcttctaccacaaccggtacctcatcatcccctgcttcttctacttcagaaacaaagagtactacttcagatacaaagagtactactccaacaagcaccaatggagttgcaaagcagatcagcaacaacattatactgactatggcacttacagtaattgcattgatctttatttagaataatttgagcaaggctgattaattatggaaagtggaaactagctaaggatcatcactactgttagtttggtttcttagttttgacttgtttcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1660" stop="2924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1960" g_stop="2205" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2291" g_stop="2624" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="580" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E265680" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1960" e_stop="2205"/>
          <exon e_start="2291" e_stop="2624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCATGTAAATAACCTTTTTTTTCTACGCTGTTTGGTCAAACTTCTAAAATTAACTTAGTTTTGATGTACTTATTTGTGTTTAATTGCAGCATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTC</genome_strand>
        <mrna_strand>TAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCAT.....................................................................................CATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTGACTTGTTTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267296" ref_strand="+" ref_description="SGN-E267296 [cLEI-17-A3]">
      <seq>tcaacttggagatttggcatcatgtataccatatgttagtggcacagcaaaaatgccaacaccagaatgttgtgaagatactcagaaattaaaagctgctaagccaaaatgtctctgtgttctcattaaagagagcactgatccatctttaggcttaccgattaacactactctggctcttcaaatgccagctgcttgcaaaattgatgctaaagtctctgattgcccatcattactgaagattccagcagattcaccagatgcaaagatttttaaaataactgattcagcttctaccacaaccggtacctcatcatcccctgcttcttctacttcagaaacaaagagtactacttcagatacaaagagtactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1676" stop="2735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1976" g_stop="2205" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2291" g_stop="2435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="375" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E267296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1976" e_stop="2205"/>
          <exon e_start="2291" e_stop="2435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCATGTAAATAACCTTTTTTTTCTACGCTGTTTGGTCAAACTTCTAAAATTAACTTAGTTTTGATGTACTTATTTGTGTTTAATTGCAGCATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTAC</genome_strand>
        <mrna_strand>TCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCAT.....................................................................................CATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547290" ref_strand="+" ref_description="SGN-E547290 [TUS-71-B13]">
      <seq>attcctttagagaaaatttgccgaaaaaaaaaaaaggtttccatattcatagttaataataatgaggaattattaattaatcattgcttttggtcttctcctagagaacgtgcacatttatgcctttccatatctatgctttttacagacgttctctgaactgaagaccacactctagttaccatgatggattcgatcctggatcgtgtagctaaagactgtggtagacggaatagctcaagtccatccactagtggggacatatttgagccttcgtcaagtagtaatgctaagctacgggcaactttggtagtgtggataaacggtcttcttccttccttaaaattgccaataaatgcttctgatgaggatttacgagcatatttgggttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12319" stop="14504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12619" g_stop="12771" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12772" i_stop="13860" i_length="1089">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13861" g_stop="14001" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="289" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14002" i_stop="14100" i_length="99">
            <donor d_prob="0.079" d_score="0.94"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14101" g_stop="14204" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E547290" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12619" e_stop="12771"/>
          <exon e_start="13861" e_stop="14001"/>
          <exon e_start="14101" e_stop="14204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTTAGAGAAAATTTGCTGAAAAAAAAAAGAAAAAAGGTTTCCATATTCATAGTTAATAATAATGAGGAATTATTAATTAATCATTGCTTTTGGTCTTCTCCTAGAGAACGTGCACATTTATGCCTTTCCATATCTATGCTTTTTACAGGTTTTTTTTTTCTCTTCTTTTTCAACAATTTTAGTCCTTTTCCTTTTTGACGAAATTTATGTCGTTGATGGGGTATGTCTTTTTTTTTTTTCCATGTTGTTTCTTTGTAATGGTGATTAATGTATTGTGGGGTTCTCAATTCTTGGCTTTTAATTTGCATGTGATCATTATTAGAGTTGATTTCAAGATTGAGTCTTTGTTAATTTTAGAGCTTGAAAATTGAAGGTATTAAAACATGGTTATTTTTTTTCTTTGCTAATTATTCTAGGACGGTATTGGAATTGTTAGTGTTATTTGGTAAGTGCTCAATCTTGATCATTTTGTCTCATTATTGGTTATGTAGCTGGAATTTTCCAGGTAGCCTAAGGTGTTTGCTTCTCATAATTTTTTTTTTTGCTATTGTTCTCCTGTCCTTTTTCTATTTTTCAAATGATGTGATGTTTTATTCAATATCTTGATCACTTTTGCTGCATATTGAGCCTAGTAGTTTTTTTTTTTAAGGCCAGAGATACGTTGATGCAACTTCAGTATTGATTTCATTTCCTCCACTTCCAATGTTGCTTGTTTGAAATGCATATGTAAAAGAAATAAAAATTGAATGGCAACTCTTTCTCAGTTGTTGAGATGAATTTGGAATTCCTTGGATTATGATTGAGCTGGTTCGAATTACCAAGGGATAAGCTGTCGGGTAATTGTATATTGACTGGGAAACTATCTGATATTTGTGTATAGTGAACCTGCAAACTGTCTGATATGTGTATAGTAAACCTGCAAACTGCCTGATAATTGCGTATAGTGACTTGCTATTTGCCAAGTGTTTGATAGTCGTGTATAGTGAACGTGCAAATTGTCTGATAATTGTGTATAGTGAACTCGCAAACTGTCTGATAATTGTGTATAGTGAACACACAAATTGTCTGATAATTGTGTATAGTGAACTGGCAAACTGTCTGATAATTGTGTATACTGAACTCGCAAACTGCTTCCGTTGTTGAGACAGCCTTTTGGATGAAATGTGTTTCCCTTTTTATGATTTATGGAGGTCAGGGATATATTGATTTCATAATGTCTGTATTCTATGTGATTCAGACGTTCTCTGAATTGAAGACCACACTCTAGTTACCATGATGGATTCAATCCTGGATCGTGTAGCTAAAGACTGTGGTAGACGGAATAGCTCAATTCCATCCACTAGCGGGGACATCTTTGAGCCTTCGTCAAGTAGTAATGGTGAGGCTGAAGGTCCAAAACATTTAATACCATGTATTTGCTGATCAAACTCTTGCTTGGGCTGATTTTCTCTTGGACTGCACTTTCTTATGTCTACAGCTAAGCTACGGGCAACTTTGGTAGTGTGGATAAACGGTCTTCTTCCTTCCTTAAGTTTGCCAGTAAATGCTTCTGATGAGGAGTTACGAGCATACTT-GGTTGAT</genome_strand>
        <mrna_strand>ATTCCTTTAGAGAAAATTTGCCG----AAAAAA-AAAAAAGGTTTCCATATTCATAGTTAATAATAATGAGGAATTATTAATTAATCATTGCTTTTGGTCTTCTCCTAGAGAACGTGCACATTTATGCCTTTCCATATCTATGCTTTTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCTCTGAACTGAAGACCACACTCTAGTTACCATGATGGATTCGATCCTGGATCGTGTAGCTAAAGACTGTGGTAGACGGAATAGCTCAAGTCCATCCACTAGTGGGGACATATTTGAGCCTTCGTCAAGTAGTAATG...................................................................................................CTAAGCTACGGGCAACTTTGGTAGTGTGGATAAACGGTCTTCTTCCTTCCTTAAAATTGCCAATAAATGCTTCTGATGAGGATTTACGAGCATATTTGGGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362406" ref_strand="+" ref_description="SGN-E362406 [cLPP-10-J2]">
      <seq>ttcctttagagaaaatttgccgaaaaaaaaaaaaggtttccatattcatagttaataataatgaggaattattaattaatcattgcttttggtcttctcctagagaacgtgcacatttatgcctttccatatctatgctttttacagacgttctctgaactgaagaccacactctagttaccatgatggattcgatcctggatcgtgtagctaaagactgtggtagacggaatagctcaagtccatccactagtggggacatatttgagccttcgtcaagtagtaatgctaagctacgggcaactttggtagtgtggataaacggtcttcttccttccttaaatttgccagtaaatgcttctgatgaggagttacgagcatacttggttgatggtactatcttgtgtcaattgttgaacaagttgaagccaggttttataccagagtttggtggttcaggcctttcttcgtcgttaggctcagaaaatgtaaaacggtttttgtcagctatggataaaatgggcttgcctaggtttcaagcatcagatttagaaaagggatccatgaaaattgttctggagtgccttttgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12320" stop="15010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12620" g_stop="12771" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12772" i_stop="13860" i_length="1089">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13861" g_stop="14001" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="288" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14002" i_stop="14100" i_length="99">
            <donor d_prob="0.079" d_score="0.94"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14101" g_stop="14258" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="446" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14259" i_stop="14347" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14348" g_stop="14458" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="557" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14459" i_stop="14672" i_length="214">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14673" g_stop="14710" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="595" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E362406" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12620" e_stop="12771"/>
          <exon e_start="13861" e_stop="14001"/>
          <exon e_start="14101" e_stop="14258"/>
          <exon e_start="14348" e_stop="14458"/>
          <exon e_start="14673" e_stop="14710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTAGAGAAAATTTGCTGAAAAAAAAAAGAAAAAAGGTTTCCATATTCATAGTTAATAATAATGAGGAATTATTAATTAATCATTGCTTTTGGTCTTCTCCTAGAGAACGTGCACATTTATGCCTTTCCATATCTATGCTTTTTACAGGTTTTTTTTTTCTCTTCTTTTTCAACAATTTTAGTCCTTTTCCTTTTTGACGAAATTTATGTCGTTGATGGGGTATGTCTTTTTTTTTTTTCCATGTTGTTTCTTTGTAATGGTGATTAATGTATTGTGGGGTTCTCAATTCTTGGCTTTTAATTTGCATGTGATCATTATTAGAGTTGATTTCAAGATTGAGTCTTTGTTAATTTTAGAGCTTGAAAATTGAAGGTATTAAAACATGGTTATTTTTTTTCTTTGCTAATTATTCTAGGACGGTATTGGAATTGTTAGTGTTATTTGGTAAGTGCTCAATCTTGATCATTTTGTCTCATTATTGGTTATGTAGCTGGAATTTTCCAGGTAGCCTAAGGTGTTTGCTTCTCATAATTTTTTTTTTTGCTATTGTTCTCCTGTCCTTTTTCTATTTTTCAAATGATGTGATGTTTTATTCAATATCTTGATCACTTTTGCTGCATATTGAGCCTAGTAGTTTTTTTTTTTAAGGCCAGAGATACGTTGATGCAACTTCAGTATTGATTTCATTTCCTCCACTTCCAATGTTGCTTGTTTGAAATGCATATGTAAAAGAAATAAAAATTGAATGGCAACTCTTTCTCAGTTGTTGAGATGAATTTGGAATTCCTTGGATTATGATTGAGCTGGTTCGAATTACCAAGGGATAAGCTGTCGGGTAATTGTATATTGACTGGGAAACTATCTGATATTTGTGTATAGTGAACCTGCAAACTGTCTGATATGTGTATAGTAAACCTGCAAACTGCCTGATAATTGCGTATAGTGACTTGCTATTTGCCAAGTGTTTGATAGTCGTGTATAGTGAACGTGCAAATTGTCTGATAATTGTGTATAGTGAACTCGCAAACTGTCTGATAATTGTGTATAGTGAACACACAAATTGTCTGATAATTGTGTATAGTGAACTGGCAAACTGTCTGATAATTGTGTATACTGAACTCGCAAACTGCTTCCGTTGTTGAGACAGCCTTTTGGATGAAATGTGTTTCCCTTTTTATGATTTATGGAGGTCAGGGATATATTGATTTCATAATGTCTGTATTCTATGTGATTCAGACGTTCTCTGAATTGAAGACCACACTCTAGTTACCATGATGGATTCAATCCTGGATCGTGTAGCTAAAGACTGTGGTAGACGGAATAGCTCAATTCCATCCACTAGCGGGGACATCTTTGAGCCTTCGTCAAGTAGTAATGGTGAGGCTGAAGGTCCAAAACATTTAATACCATGTATTTGCTGATCAAACTCTTGCTTGGGCTGATTTTCTCTTGGACTGCACTTTCTTATGTCTACAGCTAAGCTACGGGCAACTTTGGTAGTGTGGATAAACGGTCTTCTTCCTTCCTTAAGTTTGCCAGTAAATGCTTCTGATGAGGAGTTACGAGCATACTTGGTTGATGGTACTATCTTGTGTCAATTGTTGAACAAGTTGAAGCCAGGTTTTATACCAGAGGTGGTAGTTATATATAAGATTTTACAGTAATTAGAAGCTAGGGGTTGGTTTTGTTTTGATGATCTGACTTACTGCATCTTTCATTCTAGTTTGGTGGTTCAGGCCTTTCTTCGTCGTTAGGCTCAGAAAATGTAAAACGGTTTTTGTCAGCTATGGATAAAATGGGCTTGCCTAGATTCCAAGCATCAGATTTAGAAAAGGTTAGCATTAATATAGCGTTGTGCTCTTGTGTTCTAATATACGTTCATTATTTTGTGTCTCCTTATCATTATATAAGTGGTTGAATGTGTTAATTCACAGGCCATAGAGTTGTATGTATTATAATATGCAGAGAAGTGTAACTTTCTGTACCTTTAGGTACAATTACACATCATTTTTCTGCTTTTATTTAATTTACTCTGATACGTTATCCAGGGATCCATGAAAATTGTTCTGGAGTGCCTTTTGACACT</genome_strand>
        <mrna_strand>TTCCTTTAGAGAAAATTTGCCG----AAAAAA-AAAAAAGGTTTCCATATTCATAGTTAATAATAATGAGGAATTATTAATTAATCATTGCTTTTGGTCTTCTCCTAGAGAACGTGCACATTTATGCCTTTCCATATCTATGCTTTTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCTCTGAACTGAAGACCACACTCTAGTTACCATGATGGATTCGATCCTGGATCGTGTAGCTAAAGACTGTGGTAGACGGAATAGCTCAAGTCCATCCACTAGTGGGGACATATTTGAGCCTTCGTCAAGTAGTAATG...................................................................................................CTAAGCTACGGGCAACTTTGGTAGTGTGGATAAACGGTCTTCTTCCTTCCTTAAATTTGCCAGTAAATGCTTCTGATGAGGAGTTACGAGCATACTTGGTTGATGGTACTATCTTGTGTCAATTGTTGAACAAGTTGAAGCCAGGTTTTATACCAGAG.........................................................................................TTTGGTGGTTCAGGCCTTTCTTCGTCGTTAGGCTCAGAAAATGTAAAACGGTTTTTGTCAGCTATGGATAAAATGGGCTTGCCTAGGTTTCAAGCATCAGATTTAGAAAAG......................................................................................................................................................................................................................GGATCCATGAAAATTGTTCTGGAGTGCCTTTTGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701255" ref_strand="+" ref_description="SGN-E701255 [FA15BH03]">
      <seq>cttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccnaaagaataaaactgtaatagtagccccaaaagaagaggtaagactttgggagtgactaggtttcctttatagcatttagaacctgatatgagttgaaagtacttattgtagcatgaagactccaagagggaggagtttcttccttcttggaaatataatctgaatgggaaaaaatgttcttcctatttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26017" g_stop="26002" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="234" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="301" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24401" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="1049" r_length="748" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E701255" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1050</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26017" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACAAATTCA</genome_strand>
        <mrna_strand>CTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCNAAAGAATAAAACTGTAATAGTAGCCCCAAAAGAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACCTGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCCAAGAGGGAGGAGTTTCTTCCTTCTTGGAAATA-TAATCTGAATGGGAAAAAATGTTCTTCCTATTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702353" ref_strand="+" ref_description="SGN-E702353 [FA18BH12]">
      <seq>ttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctanatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaagaataaaactgtaatagtagccccaaagaaagaggtaagactttgggagtgactangtttcctttatagcatttagaacatgatatgagtttgaagtacttattgtagcatgaagaactcaagagggaggagttttctccttcattgtaatattaatctgaatgggaaaagatggtcttcttagttcctacaaaaaaaaaaaaaaaaaaaaaaaaaacttggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26053" stop="24105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25753" g_stop="25612" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="209" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24406" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="953" r_length="744" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="954" polyA_stop="978"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E702353" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25753" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAG-ACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACAA</genome_strand>
        <mrna_strand>TTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTANATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTANGTTTCCTTTATAGCATTTAGAACATGATATGAGTTTGAAGTACTTATTGTAGCATGAAGAACTC-AAGAGGGAGGAGTTTTCTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCCTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730318" ref_strand="+" ref_description="SGN-E730318 [LA23DA10]">
      <seq>gaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaagaataaaactgtaatagtagccccaaagaaagaggtaagactttgggagtgactaggtttcctttatagcatttagaacatgatatgagttgaaagtacttattgtagcatgaagactcaaagagggaggagtttcttccttcattgtaatattaatctgaatgggaaaagatggtcttcttagtcttacaaaaaaaaaaaaaaaaaaaaaattgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26042" stop="24105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25742" g_stop="25612" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="198" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24406" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="941" r_length="743" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="962"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E730318" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25742" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACAA</genome_strand>
        <mrna_strand>GAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAG-TCTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369321" ref_strand="+" ref_description="SGN-E369321 [TUS-25-E10](-)">
      <seq>caccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctttaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaagaataaaactgtaatagtagccccaaagaaagaggtaagactttgggagtgactaggtttcctttatagcatttagaacatgatatgagttgaaagtacttattgtagcatgaagactcaaagagggaggagtttcttccttcattgtaatattaatctgaatgggaaaagatggtctttttagttcttacaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25274" stop="24105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24974" g_stop="24406" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="592"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E369321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24974" e_stop="24406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACAA</genome_strand>
        <mrna_strand>CACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTTTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTTTTAGTTCTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350002" ref_strand="+" ref_description="SGN-E350002 [cTOS-4-O9]">
      <seq>aagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaagaataaaactgtaatagtagccccaaagaaagaggtaagactttgggagtgactaggtttcctttatagcatttagaacatgatatgagttgaaagtacttattgtagcatgaagactcaaagagggaggagtttcttccttcattgtaatattaatctgaatgggaaaagatggtcttcttagttcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25227" stop="24106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24927" g_stop="24407" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E350002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24927" e_stop="24407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACA</genome_strand>
        <mrna_strand>AAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703579" ref_strand="+" ref_description="SGN-E703579 [FA21DE12]">
      <seq>ttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaagaataaaactgtaatagtagccccaaagaaagaggtaagactttgggagtgactaggtttctttatagcatttagaacatgatatgagttgaaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26053" stop="24200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25753" g_stop="25612" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="209" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24500" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="858" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E703579" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25753" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTAC</genome_strand>
        <mrna_strand>TTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTT-CTTTATAGCATTTAGAACATGATATGAGTTGAAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709041" ref_strand="+" ref_description="SGN-E709041 [FA42CB03]">
      <seq>cgcttccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgaaaaaagggggtgaatgagtgttttatgtcaaaagaataaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26324" stop="24291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26025" g_stop="26002" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="242" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="309" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24589" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="869" r_length="560" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E709041" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26025" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACT</genome_strand>
        <mrna_strand>CGCTTCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAAAAAAGGGGGTGAATGAGTGTTTTATGT-CAAAAGAATAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699971" ref_strand="+" ref_description="SGN-E699971 [FA11DA03]">
      <seq>ctctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaaaaaataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26359" stop="24290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26059" g_stop="26002" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="343" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24590" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="903" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E699971" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26059" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAAC</genome_strand>
        <mrna_strand>CTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAAAATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707495" ref_strand="+" ref_description="SGN-E707495 [FA33AG01]">
      <seq>ccatgcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26327" stop="24300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26028" g_stop="26002" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="245" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="312" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24600" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="862" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E707495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26028" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAA</genome_strand>
        <mrna_strand>CCATGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709571" ref_strand="+" ref_description="SGN-E709571 [FA52BH04]">
      <seq>cgatccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactanattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctnaatcattcaaatccagtaatgtgtaaattgtgagaaaaaggggtgaatgagtgttttatgtccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="229" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="296" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24600" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="846" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E709571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAA</genome_strand>
        <mrna_strand>GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTANATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTNAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAAGGGGTGAATGAGTGTTTTATGTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707629" ref_strand="+" ref_description="SGN-E707629 [FA33CB09]">
      <seq>cgcttcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgtttttatgtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26366" stop="24301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26066" g_stop="26002" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="283" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="350" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24601" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="900" r_length="550" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E707629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26066" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTG-TTTTATGTCCAA</genome_strand>
        <mrna_strand>CGCTTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTTATGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369322" ref_strand="+" ref_description="SGN-E369322 [TUS-25-E10]">
      <seq>ttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctcttaatcttncaaatccagtaatgtgtaaattgtgagaaaagggggtgaatgagtgttttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26001" stop="24304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25701" g_stop="25612" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="157" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24604" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="703" r_length="546" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E369322" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25701" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTC</genome_strand>
        <mrna_strand>TTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTTAATCTTNCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701672" ref_strand="+" ref_description="SGN-E701672 [FA16CE06]">
      <seq>ctctccccacaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgnagtttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26359" stop="24317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26059" g_stop="26002" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="275" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24617" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="875" r_length="533" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E701672" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26059" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATG</genome_strand>
        <mrna_strand>CTCTCCCCAC-AATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGNAGTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726512" ref_strand="+" ref_description="SGN-E726512 [LA12AB04]">
      <seq>cactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctcctaatcattcaaatccagtaatgtgtaaattgtgagaaaagggggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26361" stop="24320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26061" g_stop="26002" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="278" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="345" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24620" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="875" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E726512" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26061" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGA</genome_strand>
        <mrna_strand>CACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCCTAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706086" ref_strand="+" ref_description="SGN-E706086 [FA28DH06]">
      <seq>caaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactanattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtgagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26350" stop="24328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26050" g_stop="26002" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="267" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="334" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24628" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="856" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E706086" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26050" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAA</genome_strand>
        <mrna_strand>CAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTANATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706651" ref_strand="+" ref_description="SGN-E706651 [FA30CC02]">
      <seq>ccgcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26367" stop="24334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26067" g_stop="26002" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="284" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="351" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24634" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="867" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E706651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26067" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTG</genome_strand>
        <mrna_strand>CCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705905" ref_strand="+" ref_description="SGN-E705905 [FA28BH06]">
      <seq>ctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaatccagtaatgtgtaaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26345" stop="24334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26045" g_stop="26002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="262" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="329" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24634" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="845" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E705905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26045" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTG</genome_strand>
        <mrna_strand>CTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719913" ref_strand="+" ref_description="SGN-E719913 [FC09AH11]">
      <seq>gggcgattggcggccaatcggccgaattctctttttctctccgcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcaaaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26380" stop="24354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26080" g_stop="26002" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="106" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="324" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="391" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24654" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="887" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E719913" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26080" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAAT</genome_strand>
        <mrna_strand>TCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAAACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720549" ref_strand="+" ref_description="SGN-E720549 [FC11AE11]">
      <seq>gggcgattggcggcaaatcggccgaattggcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcaaaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatcattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26365" stop="24354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26065" g_stop="26002" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="93" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="311" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="378" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24654" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="874" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E720549" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26065" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAAT</genome_strand>
        <mrna_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAAACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705892" ref_strand="+" ref_description="SGN-E705892 [FA28BG05]">
      <seq>tctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatgagttttgttctctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26358" stop="24362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26058" g_stop="26002" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="275" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24662" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="830" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E705892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26058" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATC</genome_strand>
        <mrna_strand>TCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690607" ref_strand="+" ref_description="SGN-E690607 [LH_Ea03P05]">
      <seq>ccattacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctctcaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagacgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccattatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgtggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacaccaaattcatttagcattgtatatatagagtgacagaaagagagtttagntccaatttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26351" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26056" g_stop="26002" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="273" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24680" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="811" r_length="471" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E690607" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26056" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAG-TCCAATTTGCTGATG</genome_strand>
        <mrna_strand>CCATTACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCTCAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGACGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATTATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGTGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACCAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGNTCCAATTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249261" ref_strand="+" ref_description="SGN-E249261 [cLEF-50-F2]">
      <seq>gagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaagtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatagagtgacagaaagagagtttagtccaatttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25795" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25495" g_stop="25451" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25149" g_stop="24680" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="515" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E249261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25495" e_stop="25451"/>
          <exon e_start="25149" e_stop="24680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATG</genome_strand>
        <mrna_strand>GAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAAGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698474" ref_strand="+" ref_description="SGN-E698474 [FA06BH10]">
      <seq>cgcaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttgcggaaaggcgcaagaaacctacactaaattcatttagccttgtatatatagagtgacggaaagagagtttagtccaatttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26329" stop="24382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26029" g_stop="26002" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="246" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="313" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24682" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="781" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E698474" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26029" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGA</genome_strand>
        <mrna_strand>CGCAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGCGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCCTTGTATATATAGAGTGACGGAAAGAGAGTTTAGTCCAATTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722347" ref_strand="+" ref_description="SGN-E722347 [FC17AA04]">
      <seq>aatcggccgaaatgctctctttttctctccgcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcaaacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaaaaacccatcaaaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26381" stop="24415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26081" g_stop="26002" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="94" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="312" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="379" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24715" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="814" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E722347" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26081" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGA</genome_strand>
        <mrna_strand>CTCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAAACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAAAACCCATCAAACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720647" ref_strand="+" ref_description="SGN-E720647 [FC11BF08]">
      <seq>cggccgattactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcaaaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttccagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcacctgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatttagcattgtatatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26362" stop="24416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26069" g_stop="26002" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="286" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="353" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24716" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="787" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E720647" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26069" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAG</genome_strand>
        <mrna_strand>CGGCCGATTACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAAACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCCAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCACCTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339302" ref_strand="+" ref_description="SGN-E339302 [cTOF-4-N9]">
      <seq>accaggctttggatctgttgtgaacgtgaaaaaagaaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggatgctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgtatggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26006" g_stop="26002" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="224" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="291" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24732" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="710" r_length="419" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E339302" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26006" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAG-AAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGT-TGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTT</genome_strand>
        <mrna_strand>ACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGATGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTATGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341112" ref_strand="+" ref_description="SGN-E341112 [cTOE-22-B15]">
      <seq>aagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25948" stop="24433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25648" g_stop="25612" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="104" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24733" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="521" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E341112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25648" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATT</genome_strand>
        <mrna_strand>AAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347878" ref_strand="+" ref_description="SGN-E347878 [cTOF-31-O15]">
      <seq>tctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggagggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacanagatgttgggatgttgaataaccnacatcgtaaaggattttagataaaaagaagagatttttggggaaaggcgcaagaaacctacactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26344" stop="24439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="26002" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="261" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="328" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24739" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="741" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E347878" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGA-GGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTT-GGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAA</genome_strand>
        <mrna_strand>TCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACANAGATGTTGGGATGTTGAATAACCNACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704282" ref_strand="+" ref_description="SGN-E704282 [FA23DD11]">
      <seq>gtctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattttagataaaaagaagagatttttgggganaggcgcaagaaacctacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26365" stop="24442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26065" g_stop="26002" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="282" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="349" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24742" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="757" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E704282" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26065" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACT</genome_strand>
        <mrna_strand>GTCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGANAGGCGCAAGAAACCTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256121" ref_strand="+" ref_description="SGN-E256121 [cLEG-37-N19]">
      <seq>cagaccttattaactgttgcaatttataaatgaagaaagggaggcttgtgagttgaaagctggagctgacctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctccttcaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcggaaaggatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25822" stop="24488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25638" g_stop="25612" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="94" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24788" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="456" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E256121" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25638" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTA</genome_strand>
        <mrna_strand>CAGACCTTATTAACTGTTGCAATTTAT..............................................................................................AAATGAAGAAAGGGAGGCTTGTGAGTTGAAAGCTGGAGCTGACCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTTCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGGAAAGGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328364" ref_strand="+" ref_description="SGN-E328364 [cTOC-21-C18]">
      <seq>aggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaagctgtgttcnagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaataaccaacatcgtaaaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26326" stop="24490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26026" g_stop="26002" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="243" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="310" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24790" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="670" r_length="360" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E328364" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26026" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTT</genome_strand>
        <mrna_strand>AGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAAGCTGTGTTCNAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306557" ref_strand="+" ref_description="SGN-E306557 [cLEX-13-D6]">
      <seq>agagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctncaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacacagagatgttggatgttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26033" stop="24511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25733" g_stop="25612" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="189" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24811" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="528" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E306557" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25733" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAAT</genome_strand>
        <mrna_strand>AGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTNCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272911" ref_strand="+" ref_description="SGN-E272911 [cLEM-25-P3]">
      <seq>actctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctccttcttcaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26360" stop="24531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26060" g_stop="26002" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="277" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="344" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24831" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="663" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E272911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26060" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACAC</genome_strand>
        <mrna_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTTCTTCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249020" ref_strand="+" ref_description="SGN-E249020 [cLEF-49-A20]">
      <seq>gcacgaggtttgtcccaagccccgtaagcttgggttcttcgagttcttaggctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26003" stop="24531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25710" g_stop="25612" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24831" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="486" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E249020" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25710" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGA-TTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACAC</genome_strand>
        <mrna_strand>GCACGAGGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGAGTTCTTAGGCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339493" ref_strand="+" ref_description="SGN-E339493 [cTOE-16-C11]">
      <seq>tccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctccttctncaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26356" stop="24533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26056" g_stop="26002" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="273" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24833" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="657" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E339493" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26056" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</genome_strand>
        <mrna_strand>TCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTTCTNCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343249" ref_strand="+" ref_description="SGN-E343249 [cTOF-17-G16]">
      <seq>aggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26326" stop="24533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26026" g_stop="26002" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="243" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="310" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24833" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="627" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E343249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26026" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</genome_strand>
        <mrna_strand>AGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268095" ref_strand="+" ref_description="SGN-E268095 [cLEI-15-A17]">
      <seq>tctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcacccttaccaccaccaccctcctcctncaccatcatgagcggaggaggctgtgttctagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26021" stop="24533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25721" g_stop="25612" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="177" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24833" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="494" r_length="317" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E268095" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25721" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</genome_strand>
        <mrna_strand>TCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTTACCACCACCACCCTCCTCCTNCACCATCATGAGCGGAGGAGGCTGTGTTCTAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248600" ref_strand="+" ref_description="SGN-E248600 [cLEF-58-G23]">
      <seq>tccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcggcaactgcggcatctcagctgtagcttaggtaaatctactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26321" stop="24534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26021" g_stop="26002" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="238" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="305" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24834" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="621" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E248600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26021" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGA</genome_strand>
        <mrna_strand>TCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723316" ref_strand="+" ref_description="SGN-E723316 [FC20AE09]">
      <seq>cggccgaattgctctctttttctctccgcttcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggaaaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattgaaggcttcaattgtcgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26381" stop="24575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26081" g_stop="26002" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="91" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="309" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="376" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24875" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="651" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E723316" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26081" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGG</genome_strand>
        <mrna_strand>CTCTCTTTTTCTCTCCGCTTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAAAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245390" ref_strand="+" ref_description="SGN-E245390 [cLEF-53-N16]">
      <seq>gaacccatcataccttatcaactgatgcaattcatgagtgaagaaatgggggcgggtgagtggaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagctgatagagccaattttgaggtcgattcatgttcaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcagcctcaccaccaccaccctcctcctgcaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25946" stop="24593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25646" g_stop="25612" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="102" r_length="67" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24893" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="359" r_length="257" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E245390" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25646" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGA</genome_strand>
        <mrna_strand>GAACCCATCATACCTTATCAACTGATGCAATTCAT..............................................................................................GAGTGAAGAAATGGGGGCGGGTGAGTGGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGCTGATAGAGCCAATTTTGAGGTCGATTCATGTTCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCAGCCTCACCACCACCACCCTCCTCCTGCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269135" ref_strand="+" ref_description="SGN-E269135 [cLEI-16-M21]">
      <seq>aaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtgaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26349" stop="24594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26049" g_stop="26002" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="266" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="333" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24894" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="589" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E269135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26049" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTG</genome_strand>
        <mrna_strand>AAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308122" ref_strand="+" ref_description="SGN-E308122 [cLEY-14-K3]">
      <seq>acttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctccttcaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26018" g_stop="26002" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="235" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="302" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24901" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="551" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E308122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26018" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTG</genome_strand>
        <mrna_strand>ACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTTCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265372" ref_strand="+" ref_description="SGN-E265372 [cLEI-9-E9]">
      <seq>gagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcacccttaccaccaccacccttctcctncaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagctcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26034" stop="24602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25734" g_stop="25612" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="190" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24902" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="438" r_length="248" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E265372" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25734" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGT</genome_strand>
        <mrna_strand>GAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTTACCACCACCACCCTTCTCCTNCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315492" ref_strand="+" ref_description="SGN-E315492 [cTOA-22-F20]">
      <seq>gcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcnagtgaagtttgggaacaagcaagctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26365" stop="24604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26065" g_stop="26002" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="282" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="349" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24904" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="595" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E315492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26065" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCT</genome_strand>
        <mrna_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCNAGTGAAGTTTGGGAACAAGCAAGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273317" ref_strand="+" ref_description="SGN-E273317 [cLEM-24-P18]">
      <seq>aggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26326" stop="24607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26026" g_stop="26002" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="243" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="310" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24907" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="553" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E273317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26026" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCT</genome_strand>
        <mrna_strand>AGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300836" ref_strand="+" ref_description="SGN-E300836 [cLEW-8-B5]">
      <seq>tcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctnctncaccatcatgagcggaggaggctgtgttcgagtgaagtttgggaacaagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25998" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25698" g_stop="25612" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="154" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24908" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="396" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E300836" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25698" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGC</genome_strand>
        <mrna_strand>TCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTNCTNCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306256" ref_strand="+" ref_description="SGN-E306256 [cLEY-13-N10]">
      <seq>acaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaagagccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctcctcctccaccatcatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26351" stop="24649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26051" g_stop="26002" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="269" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="336" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24949" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="537" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E306256" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26051" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAG-GCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGC</genome_strand>
        <mrna_strand>ACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGAGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699022" ref_strand="+" ref_description="SGN-E699022 [FA08BD05]">
      <seq>atctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcccaaaggggagctatgaagttgatacagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccactagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctcaccaccaccaccctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26347" stop="24667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26047" g_stop="26002" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="264" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="331" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24965" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="516" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E699022" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26047" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTC</genome_strand>
        <mrna_strand>ATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCCCAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATACAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCACTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329380" ref_strand="+" ref_description="SGN-E329380 [cTOD-2-K14]">
      <seq>ctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaagccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcacccttaccaccaccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26357" stop="24670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26057" g_stop="26002" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="274" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="341" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24970" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="521" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E329380" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26057" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCC</genome_strand>
        <mrna_strand>CTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAAGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTTACCACCACCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338062" ref_strand="+" ref_description="SGN-E338062 [cTOE-14-L4]">
      <seq>ccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcacccttaccaccaccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26320" stop="24670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26020" g_stop="26002" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="237" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="304" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24970" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="484" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E338062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26020" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCC</genome_strand>
        <mrna_strand>CCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTTACCACCACCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247147" ref_strand="+" ref_description="SGN-E247147 [cLEF-46-O22]">
      <seq>ggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26124" stop="24683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25824" g_stop="25612" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="280" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24983" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="447" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E247147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25824" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTC</genome_strand>
        <mrna_strand>GGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246142" ref_strand="+" ref_description="SGN-E246142 [cLEF-40-O6]">
      <seq>caaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaaccgtgaaaaaagaagaagaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagaatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcagtggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26350" stop="24686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26050" g_stop="26002" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="268" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24986" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="500" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E246142" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26050" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAAC-GTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAG-ATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACC</genome_strand>
        <mrna_strand>CAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACCGTGAAAAAAGAAGAAGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGAATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361709" ref_strand="+" ref_description="SGN-E361709 [cLPP-12-N23]">
      <seq>tctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggctcgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26344" stop="24693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="26002" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="261" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="328" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="24993" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="485" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E361709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAG</genome_strand>
        <mrna_strand>TCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTCGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265249" ref_strand="+" ref_description="SGN-E265249 [cLEI-9-E11]">
      <seq>gagagcacacatttctgtgtctaacggtgtcttttgtccgaagccccgtaagcttggggtcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactgccaatcccagaaagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26034" stop="24694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25734" g_stop="25612" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="190" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25149" g_stop="24994" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="346" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E265249" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25734" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="24994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCA</genome_strand>
        <mrna_strand>GAGAGCACACATTTCTGTGTCTAACGGTGTCTTTTGTCCGAAGCCCCGTAAGCTTGGGGTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725982" ref_strand="+" ref_description="SGN-E725982 [LA08DG03]">
      <seq>cctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26364" stop="24712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26064" g_stop="26002" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="281" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="348" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25012" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="486" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E725982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26064" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTG</genome_strand>
        <mrna_strand>CCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305069" ref_strand="+" ref_description="SGN-E305069 [cLEX-10-N2]">
      <seq>acttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26018" g_stop="26002" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="235" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="302" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25013" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="439" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E305069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26018" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACT</genome_strand>
        <mrna_strand>ACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265152" ref_strand="+" ref_description="SGN-E265152 [cLEI-2-E6]">
      <seq>gcctcactctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaattttgttcccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26365" stop="24714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26065" g_stop="26002" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="282" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="349" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25014" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="485" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E265152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26065" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATAC</genome_strand>
        <mrna_strand>GCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354678" ref_strand="+" ref_description="SGN-E354678 [cLHT-5-D12]">
      <seq>aggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgtaggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctctcaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatctccacccagtagggctgggaatcccctgatccaagatgcccaatttggcaaccacaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26326" stop="24724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26026" g_stop="26002" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="243" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="310" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25024" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="436" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E354678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26026" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTT</genome_strand>
        <mrna_strand>AGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTAGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCTCAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324681" ref_strand="+" ref_description="SGN-E324681 [cTOC-8-C23]">
      <seq>tccccacaaatctctctctctcccctccagaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaacgggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26356" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26056" g_stop="26002" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="273" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25085" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="405" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E324681" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26056" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATC</genome_strand>
        <mrna_strand>TCCCCACAAATCTCTCTCTCTCCCCTCCAGAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAC.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295288" ref_strand="+" ref_description="SGN-E295288 [cLET-20-L19]">
      <seq>acaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccgttcttttatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26351" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26051" g_stop="26002" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="268" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25085" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="400" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E295288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26051" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATC</genome_strand>
        <mrna_strand>ACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337562" ref_strand="+" ref_description="SGN-E337562 [cTOE-11-I22]">
      <seq>actctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgatagagccaattttgaggtcgattcatctccaccggtcttttatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26360" stop="24786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26060" g_stop="26002" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="277" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="344" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25086" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="408" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E337562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26060" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGAT</genome_strand>
        <mrna_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGGTCTTTTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338889" ref_strand="+" ref_description="SGN-E338889 [cTOE-21-O14]">
      <seq>cacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagctatgaagttgataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26132" stop="24829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26019" g_stop="26002" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="236" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="303" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25149" g_stop="25129" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="324" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E338889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26019" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
          <exon e_start="25149" e_stop="25129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAGGTGAATTTTTGTTAATTAAAAAGAAAAATCTAATCTTTTACTTCATTTTGGAAGTGGGTTTCAAGTAGATCTACTTAATTTTAACTCTTTTGGTGAATTTTTGTTAATTAAAAAGAAAAACCTAATCTCTAATGTTCTGCTTTATAAGAAGTTTTTATACTAGTTAATTTGAAAATTTAAGGCATTTTAAACAGTGTTTTGAAAAAATATAGTTGATTTGTTTCTGGATAATCTAATTTGTTGAAGTTATCAACTTTTTTACTTGCTGGTAGTTGACAAGTTGTGATTTTTCTATGAACAGGGGAGCTATGAAGTTGATAGA</genome_strand>
        <mrna_strand>CACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG.............................................................................................................................................................................................................................................................................................................GGGAGCTATGAAGTTGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337454" ref_strand="+" ref_description="SGN-E337454 [cTOE-11-I12]">
      <seq>actctccccacaaatctctctctctcccctccacaggcatccacttgttagcccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggtgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgttcatgttgaagaacccatcagaccttatcaactgatgcaatttataaatgaagaaatggaggcttgtgagttgaaagctggagctgagctgctggataccatcctcacaaaggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26360" stop="25147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26060" g_stop="26002" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="277" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="344" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E337454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26060" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG</genome_strand>
        <mrna_strand>ACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT..............................................................................................AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699024" ref_strand="+" ref_description="SGN-E699024 [FA08BD09]">
      <seq>cccttttatctctctctctcccctccacaggcatccacttgttaccccaccaggctttggatctgttgtgaacgtgaaaaaagaagatgaatatgtatgcttatcaacagaaggccttggtgggttgtgttggagttggagaaacagggagagcagacatttctgtgtctaacggcgtcgtttgtcccaagccccgtaagcttgggttcttcgattcttactctgctcatgttgaagaacccatcagaccttatcacctgatgcaatttataaatgaccaaatggaggcttgtgacttgaaagctggacctgagctgctggataccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26347" stop="25160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26054" g_stop="26002" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25612" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="271" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25517" g_stop="25460" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="329" r_length="58" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E699024" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26054" e_stop="26002"/>
          <exon e_start="25829" e_stop="25612"/>
          <exon e_start="25517" e_stop="25460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAGGTAACGCCCCCCACCTCCTTCTTCCTCATCTACCCATCTCCTTTTTTTATTCTATGTTTATATATAGTAATTTCAAATATATATATATATATATATGTATATATGTATATATATATTTATGGATATGGAAGTAAAGATCTTAAGTTTTTATAATCATTTTCTTGATTTTCAGGCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTATGTATGCCCCTTTTCTAACCAACATTCAATTTATCTCTTTTTTCTTCTTCTTTCTGTCTCTTGCTTATTTGGTGTTTTTTGTTTTGGATTTTTAGAAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATC</genome_strand>
        <mrna_strand>CCCTTTTATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTACCCCACCAG............................................................................................................................................................................GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGCGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGCTCATGTTGAAGAACCCATCAGACCTTATCACCTGATGCAATTTAT..............................................................................................AAATGACCAAATGGAGGCTTGTGACTTGAAAGCTGGACCTGAGCTGCTGGATACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305710" ref_strand="+" ref_description="SGN-E305710 [cLEX-14-G15]">
      <seq>gcttggtttatcttcatggaagagtatatacttaaaaaaaacggtaacaagcgaacccgagaggattcgggtttggactcggtcttcgactcgcatgagtcgaagcgagtccatattgaggcaaatgcaggttcgagctcggttgagttgaacggagttgaaatggaattagaggtgaactcgtccgagtcaaatcaggaaggtcatgtctgttcgccggagtttgatgagtatgatgcagacgtagacgtagattcgccggaggctaagcagattagagaagatattctggatatacttgatgagccagaaacagtgagagatggtactataccagaaaatcaggaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40747" stop="41920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41046" g_stop="41620" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E305710" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41046" e_stop="41620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAA</genome_strand>
        <mrna_strand>GCTTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378569" ref_strand="+" ref_description="SGN-E378569 [TUS-33-H16]">
      <seq>ttggtttatcttcatggaattctatatacttaaaaaaaacggtaacaagcgaacccgagaggattcgggtttggactcggtcttcgactcgcatgagtcgaagttagtccatattgaggcaaatgcaggttcgagctcggttgagttgaacggagttgaaatggaattagaggtgaactcgtccgagtcaaatcaggaaggtcatgtctgttcgccggagtttgatgagtatgatgcagacgtagacgtagattcgccggaggctaagcagattagagaagatattctggatatacttgatgagccagaaacagtgagagatggtactataccagaaaatcaggaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgaaaacgaattgttaagacatgactcattcgactttgggatgcttgccgggatcatggacggagataattacggcagtgaaaatggcggtgattttgtcacagtgggcggactattcgattatccagatccatcaaatttttcggagttgtcacggctgccggagtccctaccggctttgtagagaaaagtgtgtttttaggcggcgtgtctcacctgtccggtcgaaatctaatagctttagaatattagtttgctgtttgtacattttaaaaagattatagcgaggctgaatatcaatataagtttgcttttttttttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40770" stop="42249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41048" g_stop="41952" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="903" r_length="903" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E378569" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41048" e_stop="41952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTTCTTATACAAAGTC</genome_strand>
        <mrna_strand>TTGGTTTATCTTCATGGAATTCTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGTTAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATT-ATAGCGAGGCTGAATATCAATATAAGTTTGC-TTTTTTTTTTTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374292" ref_strand="+" ref_description="SGN-E374292 [TUS-33-H16]">
      <seq>ttggtttatcttcatggaagagtatatacttaaaaaaaacggtaacaagcgaacccgagaggattcgggtttggactcggtcttcgactcgcatgagtcgaagcgagtccatattgaggcaaatgcaggttcgagctcggttgagttgaacggagttgaaatggaattagaggtgaactcgtccgagtcaaatcaggaaggtcatgtctgttcgccggagtttgatgagtatgatgcagacgtagacgtagattcgccggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40748" stop="41611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41048" g_stop="41311" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E374292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41048" e_stop="41311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGC</genome_strand>
        <mrna_strand>TTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321421" ref_strand="+" ref_description="SGN-E321421 [cTOB-23-C20]">
      <seq>aaacggtaacaagcgaacccgagaggattcgggtttggactcggtcttcgactcgcatgagtcgaagcgagtccatattgaggcaaatgcaggttcgagctcggttgagttgaacggagttgaaatggaattagaggtgaactcgtccgagtcaaatcaggaaggtcatgtctgttcgccggagtttgatgagtatgatgcagacgtagacgtagattcgccggaggctaagcagattagagaagatattctggatatacttgatgagccacaaacagtgagagatggtactataccagaaaatcacgaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgagaacgaattgttaagacatgactcattcgactttgggatgcttgccgggatcatggacggagataattacggcagtgagaatggcggtgattttgtcacagtgggcggactattcgattatccagatccatcaaatttttcggagttgtcacggctgccggagtccctaccggctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40784" stop="42096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41084" g_stop="41796" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E321421" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41084" e_stop="41796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGT</genome_strand>
        <mrna_strand>AAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCACAAACAGTGAGAGATGGTACTATACCAGAAAATCACGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAGAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAGAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321237" ref_strand="+" ref_description="SGN-E321237 [cTOB-23-C21]">
      <seq>aaacggtaacaagcgaacccgacaggattcgggtttggactcggtcttctactcgcatgagtcgaagcgagtccatattgaggcaaatgcaggttcgagctcggttgagttgaacggagttgaaatggaattagaggtgaactcgtccgagtcaaatcaagaaggtcatgtctgttcgccggagtttgatgagtatgatgcagacgtagacgtagattcgccggaggctaagcagattagagaagaattctggatatacttgatgagccacaaacagtgagagatggtactataccctaaaatcaggaccttgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40784" stop="41702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41084" g_stop="41402" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E321237" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41084" e_stop="41402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCT</genome_strand>
        <mrna_strand>AAACGGTAACAAGCGAACCCGACAGGATTCGGGTTTGGACTCGGTCTTCTACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAAGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGA-ATTCTGGATATACTTGATGAGCCACAAACAGTGAGAGATGGTACTATACCCTAAAATCAGGACCTTGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374291" ref_strand="+" ref_description="SGN-E374291 [TUS-33-H16](-)">
      <seq>ttcgccggaggctaagcagattagagaagatattctggatatacttgatgagccagaaacagtgagagatggtactataccagaaaatcaggaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgaaaacgaattgttaagacatgactcattcgactttgggatgcttgccgggatcatggacggagataattacggcagtgaaaatggcggtgattttgtcacagtgggcggactattcgattatccagatccatcaaatttttcggagttgtcacggctgccggagtccctaccggctttgtagagaaaagtgtgtttttaggcggcgtgtctcacctgtccggtcgaaatctaatagctttagaatattagtttgctgtttgtacattttaaaaagattaatagcgaggctgaatatcaatataagtttgctttttttttttttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41000" stop="42249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41300" g_stop="41956" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E374291" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41300" e_stop="41956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTTCTTATACAAAGTCATTA</genome_strand>
        <mrna_strand>TTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTTCTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732015" ref_strand="+" ref_description="SGN-E732015 [LB01AC01]">
      <seq>gcttattagagaagatattctggatatacttgatgagccagaaacagtgagagatggtactataccagaaaatcaggaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgaaaacgaattgttaagacatgactcattcgactttgggatccttgccgggatcatggacggagataattacggcagtgaaaatggcggtgattttgtcacagtgggcggactattcgattatccagatccatcaaatttttcggagttgtcacggctgccggagtccctaccggctttgtagagaaaagtgtgtttttaggcggcgtgtctcacctgtccggtcgaaatctaatagctttagaatattagtttgctgtttgtacattttaaaaagattaatagcgaggctgaatatcaatataagtttgcttttttttttttnnnaannaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41015" stop="42238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41315" g_stop="41949" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="657"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E732015" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41315" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTTCTTATACAAA</genome_strand>
        <mrna_strand>GCTTATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATCCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTNNNAANNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251733" ref_strand="+" ref_description="SGN-E251733 [cLEG-15-M20]">
      <seq>agaaacagtgagagatggtactataccagaaaatcaggaccttgactctgtaatcaagagttttgaagaagagatccttcatccttcaactcagccatctcctcagaccttcattgacctaacgttctcagattccggccgtactcaatcggacctcggctacctcctagaagcttcggacgatgagcttggcctcccgcccagcttttctcccgaaagaaatgttgactccgaatcgagattgggaaatacgattggatttgaaaacgaattgttaagacatgactcattcgactttgggatgcttgccgggatcatggacggagataattacggcagtgaaaatggcggtgattttgtcacagtgggcggactattcgattatccagatccatcaaatttttcggagttgtcacggctgccggagtccctaccggctttgtagagaaaagtgtgtttttaggcggcgtgtctcacctgtccggtcgaaatctaatagctttagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41054" stop="42162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41354" g_stop="41862" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E251733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41354" e_stop="41862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATA</genome_strand>
        <mrna_strand>AGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732576" ref_strand="+" ref_description="SGN-E732576 [LB02CC04]">
      <seq>gccacaacaatggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56065" stop="58494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="56760" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58194" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="773" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E732576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="56760"/>
          <exon e_start="57818" e_stop="58194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACT</genome_strand>
        <mrna_strand>GCCACAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732636" ref_strand="+" ref_description="SGN-E732636 [LB02CH06]">
      <seq>caacaatggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56069" stop="58498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56369" g_stop="56760" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58206" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="781" r_length="389" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E732636" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56369" e_stop="56760"/>
          <exon e_start="57818" e_stop="58206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAG</genome_strand>
        <mrna_strand>CAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701532" ref_strand="+" ref_description="SGN-E701532 [FA16BA02]">
      <seq>caatggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaactacaagtcacaagaatgttcacagagtgattctcttgcaattcttgttcccatgttataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56072" stop="58553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56372" g_stop="56760" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58253" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="826" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E701532" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56372" e_stop="56760"/>
          <exon e_start="57818" e_stop="58253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTT-CCATGTTATACA</genome_strand>
        <mrna_strand>CAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCCATGTTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733237" ref_strand="+" ref_description="SGN-E733237 [LB04BD05]">
      <seq>cattggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactggataaagtatggaagttgatcctttattttcaactacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56072" stop="58498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56372" g_stop="56760" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58210" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="782" r_length="393" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E733237" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56372" e_stop="56760"/>
          <exon e_start="57818" e_stop="58210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATG</genome_strand>
        <mrna_strand>CATTGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGGATAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340566" ref_strand="+" ref_description="SGN-E340566 [cTOF-1-C7]">
      <seq>aatggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56073" stop="58319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56373" g_stop="56760" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58019" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="590" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E340566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56373" e_stop="56760"/>
          <exon e_start="57818" e_stop="58019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGA</genome_strand>
        <mrna_strand>AATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274320" ref_strand="+" ref_description="SGN-E274320 [cLEN-15-K9]">
      <seq>atggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56074" stop="58348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56374" g_stop="56760" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58048" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="618" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E274320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56374" e_stop="56760"/>
          <exon e_start="57818" e_stop="58048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTA</genome_strand>
        <mrna_strand>ATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275510" ref_strand="+" ref_description="SGN-E275510 [cLEN-10-C20]">
      <seq>atggctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56074" stop="58289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56374" g_stop="56760" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="57989" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="559" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E275510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56374" e_stop="56760"/>
          <exon e_start="57818" e_stop="57989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAAT</genome_strand>
        <mrna_strand>ATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339409" ref_strand="+" ref_description="SGN-E339409 [cTOF-4-G16]">
      <seq>gctctcacaggaaatcgaatcctctgcaacagctcatcaacaaaaataccgcctacccaattccctcttggccgtcccttcttacttccctctcatgggagaagaagtcaatgcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaacaataagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggctgttggcgctctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatacataagtttgctaagtgcacttctaatgaagaattctgtcttcatattggcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56077" stop="58418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56377" g_stop="56760" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58118" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="685" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E339409" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56377" e_stop="56760"/>
          <exon e_start="57818" e_stop="58118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTT</genome_strand>
        <mrna_strand>GCTCTCACAGGAAATCGAATCCTCTGCAACAGCTCATCAACAAAAATACCGCCTACCCAATTCCCTCTTGGCCGTCCCTTCTTACTTCCCTCTCATGGGAGAAGAAGTCAATGCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAACAATAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTGTTGGCGCTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATACATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGGCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734074" ref_strand="+" ref_description="SGN-E734074 [LB11CH03]">
      <seq>ctctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaactacaagtcacaagaatgttcacagagtgattctcttgcaattcttgttccatgttatacaatattgtgttagttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56078" stop="58573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56378" g_stop="56760" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58271" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="837" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="838" polyA_stop="849"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E734074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56378" e_stop="56760"/>
          <exon e_start="57818" e_stop="58271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAA</genome_strand>
        <mrna_strand>CTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373150" ref_strand="+" ref_description="SGN-E373150 [TUS-32-C23]">
      <seq>tctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaaagctgaatgtagacatttttatactttgtatccatgtgggattgtagtgcaaaatatactgataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56079" stop="58465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56760" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58165" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="730" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E373150" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56760"/>
          <exon e_start="57818" e_stop="58165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGC-AAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAA</genome_strand>
        <mrna_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAAGCTG-AATGTAGACATTTTTATACTTTGTATCCATGTGGGATTGTAGTGCAAAATATACTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347742" ref_strand="+" ref_description="SGN-E347742 [cTOF-26-G10]">
      <seq>tctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaaagctgaatgtagacatttttatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56079" stop="58425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56760" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58125" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="690" r_length="308" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E347742" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56760"/>
          <exon e_start="57818" e_stop="58125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGC-AAGCTGAAATGTAGACATTTTTATACTTT</genome_strand>
        <mrna_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAAGCTG-AATGTAGACATTTTTATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348615" ref_strand="+" ref_description="SGN-E348615 [cTOF-30-G2]">
      <seq>tctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaaatctgtcttcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56079" stop="58338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56760" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58038" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="603" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E348615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56760"/>
          <exon e_start="57818" e_stop="58038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATT</genome_strand>
        <mrna_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAAATCTGTCTTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266352" ref_strand="+" ref_description="SGN-E266352 [cLEI-3-I21]">
      <seq>tctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacacgaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56079" stop="58267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56760" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="57967" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="532" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E266352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56760"/>
          <exon e_start="57818" e_stop="57967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACT</genome_strand>
        <mrna_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACACGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292613" ref_strand="+" ref_description="SGN-E292613 [cLET-11-A17]">
      <seq>tctcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56079" stop="57066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56760" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E292613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG</genome_strand>
        <mrna_strand>TCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724671" ref_strand="+" ref_description="SGN-E724671 [FC24DC10]">
      <seq>tcacaggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56081" stop="58465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56381" g_stop="56760" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58165" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="728" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E724671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56381" e_stop="56760"/>
          <exon e_start="57818" e_stop="58165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAA</genome_strand>
        <mrna_strand>TCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693215" ref_strand="+" ref_description="SGN-E693215 [LH_Ea10L21]">
      <seq>caggtaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttaattccctctcaggggagaagaagtcaattctctgtattcgctgcaaagaagttcacttcagggaagaacaagagaagttcaatttcaactaaagagcctgtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgacttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtgataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagatgctcttacaagctgaaatgtagacatttttatactttgtatcaatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgattctttattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56084" stop="58498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56384" g_stop="56760" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58200" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="769" r_length="392" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E693215" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56384" e_stop="56760"/>
          <exon e_start="57818" e_stop="58200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCG-A-A-G------CAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGT</genome_strand>
        <mrna_strand>CAGGTAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTAATTCCCTCTCAGGGGAGAAGAAGTCAATTCTCTGTATTCGCTGCAAAGAAGTTCACTTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCTGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGACTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTGATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGATGCTCTTACAAGCTGAAATGTAGACATTTTTATACTTTGTATCAATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATTCTTTATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342277" ref_strand="+" ref_description="SGN-E342277 [cTOF-8-C14]">
      <seq>ggaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56086" stop="58425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56386" g_stop="56760" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58125" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="683" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E342277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56386" e_stop="56760"/>
          <exon e_start="57818" e_stop="58125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTT</genome_strand>
        <mrna_strand>GGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317987" ref_strand="+" ref_description="SGN-E317987 [cTOA-30-J11]">
      <seq>gaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtgggaattgtagtgcaaatatactgataaaagtatgggaagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56087" stop="58480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56387" g_stop="56760" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58180" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="737" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E317987" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56387" e_stop="56760"/>
          <exon e_start="57818" e_stop="58180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGT-GGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATC</genome_strand>
        <mrna_strand>GAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGGAATTGTAGTGC-AAATATACTGATAAAAGTATGGGAAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322375" ref_strand="+" ref_description="SGN-E322375 [cTOB-24-P13]">
      <seq>gaaatcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacggggtaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacattttttatacttgtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56087" stop="58431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56387" g_stop="56760" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58131" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="688" r_length="314" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E322375" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56387" e_stop="56760"/>
          <exon e_start="57818" e_stop="58131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACA-TTTTTATACTTTGTATCC</genome_strand>
        <mrna_strand>GAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGGTAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTTATAC-TTGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284797" ref_strand="+" ref_description="SGN-E284797 [cLES-3-J24]">
      <seq>gaattcgaattctctgcaacagctcatcaacaaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56087" stop="58214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56387" g_stop="56760" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="57914" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="471" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E284797" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56387" e_stop="56760"/>
          <exon e_start="57818" e_stop="57914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAAC</genome_strand>
        <mrna_strand>GAATTCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295921" ref_strand="+" ref_description="SGN-E295921 [cLET-27-D13]">
      <seq>caaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctctcttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56117" stop="58208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56417" g_stop="56760" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="57908" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="435" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E295921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56417" e_stop="56760"/>
          <exon e_start="57818" e_stop="57908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCAC</genome_strand>
        <mrna_strand>CAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTCTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295216" ref_strand="+" ref_description="SGN-E295216 [cLET-20-N14]">
      <seq>aaaaataccgtttacccaattccctcttcgtcgtcccttcttacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56118" stop="58336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56418" g_stop="56760" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58036" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="562" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E295216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56418" e_stop="56760"/>
          <exon e_start="57818" e_stop="58036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATA</genome_strand>
        <mrna_strand>AAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373149" ref_strand="+" ref_description="SGN-E373149 [TUS-32-C23](-)">
      <seq>tacttccctctcaggggagaagaagtcaattcactgcattcgctgcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattatcaactacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56159" stop="58498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56459" g_stop="56760" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58206" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="691" r_length="389" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E373149" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56459" e_stop="56760"/>
          <exon e_start="57818" e_stop="58206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAG</genome_strand>
        <mrna_strand>TACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTATCAACTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733388" ref_strand="+" ref_description="SGN-E733388 [LB04DA03]">
      <seq>ccttcaaagaagttcacgtcagggaagaacaagagaagttcaatttcaactaaagagccagtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaccccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56201" stop="58498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56500" g_stop="56760" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58198" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="642" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E733388" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56500" e_stop="56760"/>
          <exon e_start="57818" e_stop="58198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAA</genome_strand>
        <mrna_strand>CCTTCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250438" ref_strand="-" ref_description="SGN-E250438 [cLEG-6-N12]">
      <seq>gtaaaagaagaagaagaagaattccagacgatcaatattcgtattgatagtcaagatagggtttctgcaaccacaacaactggtgatgcttttgtgatgccgaagcttcctggagaggaaactgatttctgggaaggacctcaatgggatggatttggattctttgttcagtatatgtgggcttttggcgttctcttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56260" stop="58456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56560" g_stop="56760" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58156" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="540" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E250438" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250438" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56560" e_stop="56760"/>
          <exon e_start="57818" e_stop="58156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATA</genome_strand>
        <mrna_strand>GTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294684" ref_strand="-" ref_description="SGN-E294684 [cLET-22-P13]">
      <seq>gttcagtatatgtgggcttttggcgttcttttttcgctgattgcatgtggtattgctgtggccacatataacgatggagctacagatttcaaggctactcctgtgtataaggaagcaatggaatcacaagaacttcttgaagaaccagaggcttctaactcagatgtgtttgagtcaaatccaactgaagaagcacctagtttggaatagataagtttgctaagtgcacttctaatgaagaattctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgatacaagtatgcaagttgatcctttattttcaactacaagtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56425" stop="58508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56725" g_stop="56760" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057">
            <donor d_prob="0.686" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57818" g_stop="58209" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="428" r_length="392" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58210" i_stop="58307" i_length="98">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58308" g_stop="58313" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="434" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E294684" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294684" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56725" e_stop="56760"/>
          <exon e_start="57818" e_stop="58209"/>
          <exon e_start="58308" e_stop="58313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCGGTGCATCCTCAACCCTGCTAATTTGTTTTAGTATAATCTTTGTTAATGTTAGCTATTTAACATTCATTAGTATTGATTTATTTGTGTTGAATATGTGAGCCGTTTATGCATTCTGAACAGAAAAAGCTGTTCCTGCGAACACATAACTAATACTCTAGCTCCGCCTTGTGTGAAATATGTGTTTGGTTTGTATTCTTCATTACATACCAAAAATTATAGAAACTATTATAGCTGAGTTTATGTCAATAGGTTATAACCGATCAAATGACTACAAAAAACAACTTTTTCATGTTCAAAATTTCTTTTCCCACATTTAGATATTCAGATGTTCCACAATCTTGTTCACACTCACTACCACAGTGCATAAGATACCAGTCCCCAGACCATGCTAATGCGGGATGCTCTGTGCACTGGACTAACATTAACTTTTATGGAAGGTTAGGATTAAAACTAAATGGTCTTCTTTTCTATTGTCATATATGCAAAAAATGATATTTTTGTTAGATTTTTCGAGATGGACAATATTATGAGATGAAAGGGAATAATGAAAAGCTGAAAAATTACATTGTCCTGGTGAAGCTACCATTGGTTGATTCTTGATTGTGGGGTTAGTTTATCCGACTTTATCGGGTTATTTAATGACTGGTGCACTACCCATAACGACTTGCAGTTGGTCATGAAAGTTATAAATAAGTTTCTTGTTTCTTCTTGGTGCTTCTTAAGATTAGTTTGGATTACCAGCAACAGTTGTTTCTGTCTGACACAAGAAGACAACCAAAATGGTGAGCCATGTCAATTAATTTTATTTAGAAATTAGGATGGGTTTTGGTGTAATCTCATCTAGAGGAAGCCTATGCCTGTTTTCCATAATGGTTATGTACTTATGTTTGGTATTATAACCATGGAAATGGGAAATTGGAACAACTTGAGATACCTTTCGCAGAAGAAAACTTAGTATTTGTTTTCTATTTTTGCATCTTCTTTTTCTCTTAAGGTGGTGTTTTTAATATCCTTTATAGGGTTCTTACCCGTTTGATTTTGGCATCTTTATTGGCAGCTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGCATGGATGAGTGTATATTACTGCAGAAAATA</genome_strand>
        <mrna_strand>GTTCAGTATATGTGGGCTTTTGGCGTTCTTTTTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATACAAGTATGCAAGTTGATCCTTTATTTTCAACTACAAGTCAAAAAAAA..................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239394" ref_strand="+" ref_description="SGN-E239394 [cLEL-9-P15](-)">
      <seq>attctgtcttcatattgtcataattacgggtaaaacagaagtccagctaagagtgcccaacttagattcgaagcaagctgaaatgtagacatttttatactttgtatccatgtggaattgtagtgcaaaatatactgataaaagtatggaagttgatcctttattttcaactacaagtcacaagaatgttcacagagtgattctcttgcaattcttgttccatgttatacaatattgtgttagttttaagactcttgtcgccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57723" stop="58583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58023" g_stop="58283" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="263" polyA_stop="289"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E239394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58023" e_stop="58283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</genome_strand>
        <mrna_strand>ATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202846" ref_strand="+" ref_description="SGN-E202846 [cLEB-1-K4]">
      <seq>gcacgagaagaagaagaagccaaaagcaccggaaatagcagatccttctcatcttctccggcaatagatcagtcttccgataaatttctgctgctctcattccatccattgcttctcagatatttgagcattgcgagaaaccatgtccgctattgatgagccgttatatcctattgcggttttgattgatgagttgaagaatgaagacatccagcttagattgaattcaatccggcgattgtctaccatcgcccgtgctcttggtgaggagagaacacggaaagagttgattccatttctaagtgagaacaacgatgatgatgacgaagttcttcttgcaatggctgaagagttgggcatgtttattccatatgttggaggggttgaacatgcgcgtgtattgcttccacccttagaaggactttgtagtgttgaggagacttgtgttagggaaaaggcagttgagtcattatgcaaaattgggtcccaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60239" stop="62013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60536" g_stop="60654" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60655" i_stop="61338" i_length="684">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61339" g_stop="61713" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="494" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E202846" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60536" e_stop="60654"/>
          <exon e_start="61339" e_stop="61713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAAGAAGAAGAAGCCAAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAGGTACGAATCTCTCTGTCACACACACAGACGATACAGTCTAGATGCCTCGGCTTTGATATCTCGGTTTTCTAGAACCTTCTATTCCTATTATTTTCTGTATCTTAAGGTTCAAGCTTTCACTCAACCTATAAACTAGACGCATGGTCGCTTAAAGTATGTGGAATTTTTCTGTACGCTATCGAAGTCAGTTTTCATTTTATCTGAAAAAACTGCTTCATAAATATGCGCATTAATTACAAGTTACTTTTATGCTTCCGATCACAAATGTAAAGTGGAAATGTGAAAGATCAGTAATTTGACCGATTCTTTTTGTTGTCGGTTTGAGTAGTTAATTTCTTGTATGGTTAGTTGTTTTGATCAGATCACTTCATTATTCATGCAAATCTTTCATATCTTCAATTTATAAGTGAGTAAGATTTGTTATACTGATGGCAATATTGTTTAATGTTAAATAATGCAGGCATCAGTTAAATTTTATTTTATTTTCTCTTTCTTTTGCAATTTATTGCTTACTGATGTGAATAAAAACTTTTCCGGCCCATTTACTAAGCCTTCTATTGATAATATATATATATATATATATATATATATATATAAAGAAGAATTCGAGCTATTGATTTTTCAAAATATTTGCTGTTCTTGTACAGTTAAATAATTCAAGTTTTCATGAACATATATGGACAGATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCATTTCTAAGTGAGAACAACGATGATGATGACGAAGTTCTTCTTGCAATGGCTGAAGAGTTGGGCATGTTTATTCCATATGTTGGAGGGGTTGAACATGCGCGTGTATTGCTTCCACCCTTAGAAGGACTTTGTAGTGTTGAGGAGACTTGTGTTAGGGAAAAGGCAGTTGAGTCATTATGCAAAATTGGGTCCCAAATGA</genome_strand>
        <mrna_strand>GCACGAGAAGAAGAAGAAGCCAAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCATTTCTAAGTGAGAACAACGATGATGATGACGAAGTTCTTCTTGCAATGGCTGAAGAGTTGGGCATGTTTATTCCATATGTTGGAGGGGTTGAACATGCGCGTGTATTGCTTCCACCCTTAGAAGGACTTTGTAGTGTTGAGGAGACTTGTGTTAGGGAAAAGGCAGTTGAGTCATTATGCAAAATTGGGTCCCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281333" ref_strand="-" ref_description="SGN-E281333 [cLEL-1-B22](-)">
      <seq>gcacgagaagaagaagaagccaaaagcaccggaaatagcagatccttctcatgttctccggcaatagatcagtcttccgataaatttctgctgctctcattccatccattgcttctcagatatttgagcattgcgagaaaccatgtccgctattgatgagccgttatatcctattgcggttttgattgatgagttgaagaatgaagacatccagcttagattgaattcaatccggcgattgtctaccatcgcccgtgctcttggtgaggagagaacacggaaagagttgattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60239" stop="61814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60536" g_stop="60654" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60655" i_stop="61338" i_length="684">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61339" g_stop="61514" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="295" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E281333" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281333" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60536" e_stop="60654"/>
          <exon e_start="61339" e_stop="61514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAAGAAGAAGAAGCCAAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAGGTACGAATCTCTCTGTCACACACACAGACGATACAGTCTAGATGCCTCGGCTTTGATATCTCGGTTTTCTAGAACCTTCTATTCCTATTATTTTCTGTATCTTAAGGTTCAAGCTTTCACTCAACCTATAAACTAGACGCATGGTCGCTTAAAGTATGTGGAATTTTTCTGTACGCTATCGAAGTCAGTTTTCATTTTATCTGAAAAAACTGCTTCATAAATATGCGCATTAATTACAAGTTACTTTTATGCTTCCGATCACAAATGTAAAGTGGAAATGTGAAAGATCAGTAATTTGACCGATTCTTTTTGTTGTCGGTTTGAGTAGTTAATTTCTTGTATGGTTAGTTGTTTTGATCAGATCACTTCATTATTCATGCAAATCTTTCATATCTTCAATTTATAAGTGAGTAAGATTTGTTATACTGATGGCAATATTGTTTAATGTTAAATAATGCAGGCATCAGTTAAATTTTATTTTATTTTCTCTTTCTTTTGCAATTTATTGCTTACTGATGTGAATAAAAACTTTTCCGGCCCATTTACTAAGCCTTCTATTGATAATATATATATATATATATATATATATATATATAAAGAAGAATTCGAGCTATTGATTTTTCAAAATATTTGCTGTTCTTGTACAGTTAAATAATTCAAGTTTTCATGAACATATATGGACAGATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCA</genome_strand>
        <mrna_strand>GCACGAGAAGAAGAAGAAGCCAAAAGCACCGGAAATAGCAGATCCTTCTCATGTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339492" ref_strand="+" ref_description="SGN-E339492 [cTOE-16-A19]">
      <seq>aaaagcaccggaaatagcagatccttctcatcttctccggcaatagatcagtcttccgataaatttctgctgctctcattccatccattgcttctcagatatttgagcattgcgagaaaccatgtccgctattgatgagccgttatatcctattgcggttttgattgatgagttgaagaatgaagacatccagcttagattgaattcaatccggcgattgtctaccatcgcccgtgctcttggtgaggagagaacacggaaagagttgattccatttctaagtgagaacaacgatgatgatgacgaagttcttcttgcaatggctgaagagttgggcatgtttattccatatgttggaggggttgaacatgcgcgtgtattgcttccacccttagaaggactttgtagtgttgaggagacttgtgttagggaaaaggcagttgagtcattatgcaaaattgggtcccaaatgaaggaatcggatttggtggaatcatttattccacttgtgaagagactggctactggagagtggttcactgctcgagtttcctcctgtggattgtttcacattgcttatcctagtgctccagagccactaaagaatgaactgagaaccatatatagccaactttgtcaagatgatatgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60257" stop="63555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60557" g_stop="60654" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60655" i_stop="61338" i_length="684">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61339" g_stop="61754" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="514" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61755" i_stop="63116" i_length="1362">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63117" g_stop="63255" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="653" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E339492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60557" e_stop="60654"/>
          <exon e_start="61339" e_stop="61754"/>
          <exon e_start="63117" e_stop="63255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAGGTACGAATCTCTCTGTCACACACACAGACGATACAGTCTAGATGCCTCGGCTTTGATATCTCGGTTTTCTAGAACCTTCTATTCCTATTATTTTCTGTATCTTAAGGTTCAAGCTTTCACTCAACCTATAAACTAGACGCATGGTCGCTTAAAGTATGTGGAATTTTTCTGTACGCTATCGAAGTCAGTTTTCATTTTATCTGAAAAAACTGCTTCATAAATATGCGCATTAATTACAAGTTACTTTTATGCTTCCGATCACAAATGTAAAGTGGAAATGTGAAAGATCAGTAATTTGACCGATTCTTTTTGTTGTCGGTTTGAGTAGTTAATTTCTTGTATGGTTAGTTGTTTTGATCAGATCACTTCATTATTCATGCAAATCTTTCATATCTTCAATTTATAAGTGAGTAAGATTTGTTATACTGATGGCAATATTGTTTAATGTTAAATAATGCAGGCATCAGTTAAATTTTATTTTATTTTCTCTTTCTTTTGCAATTTATTGCTTACTGATGTGAATAAAAACTTTTCCGGCCCATTTACTAAGCCTTCTATTGATAATATATATATATATATATATATATATATATATAAAGAAGAATTCGAGCTATTGATTTTTCAAAATATTTGCTGTTCTTGTACAGTTAAATAATTCAAGTTTTCATGAACATATATGGACAGATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCATTTCTAAGTGAGAACAACGATGATGATGACGAAGTTCTTCTTGCAATGGCTGAAGAGTTGGGCATGTTTATTCCATATGTTGGAGGGGTTGAACATGCGCGTGTATTGCTTCCACCCTTAGAAGGACTTTGTAGTGTTGAGGAGACTTGTGTTAGGGAAAAGGCAGTTGAGTCATTATGCAAAATTGGGTCCCAAATGAAGGAATCGGATTTGGTGGAATCATTTATTCCACTTGTGAAGGTCTGTATATTGTCCTAATATCTTTGAATGCTGCTTGACTCTATTTCTATGTTTGTTATATAGCTCTAGAAACTCTGTAAGATTGGTAACTCCTATATTCTAGTATAACTGTATAGTCAGCCTGCTCTATAATTGGGTTATTCCTTTTTCTCATTTTTGGTTGGTATGTGTGTTTTTGAGACCTTAGAATAAGGCTTCTGCAACTTCAATATGGTAGCTGCTGATTTCAATTTGTGTAATAAAGAAATCATATCTTAGCCTAGATAAATGCTAAGCTAATGTTGTTCTTCGTATTTTGTGCTTTGTCTCATGGTGACTATTGAAAAGATGGTAGAAAAACATGAAGGTTCATGGTTCATTACATGGGTCAGCAGGAGATATCTTGTAAATAATCTCTTGATCTTTTTAAAGATGTTCCCTTCTGGGTATCCTTTACTAATGAGGTTCAGAATTTGGGGAAATATATAAATTGGTTGCTGTATTTGGTATGCACTGACCCTTAAGAAAGTTTTAATTGATTGTGAGCTAAGTTGCTTGGTCTCGGGTACGGGTGTCCGATACGGGGATGGATCCAGAGGTTGAATCCTATATGATCTAAATTTTAAGATTCGGGGATATGGATCCATGTATAGATACGGGTGCGGAGATCGGCCTAAAATAATTCCAATTCTAAAAATAGAGTTATAAAATCTAAATTATGAGATATTATATGGAGAACTTGAGGTGAAATATTGAATAAGAGGAGAACCCCGAAAGGAGATAAAAGGAAAGGCAGTGGTAATAGAAATTTATACATACAAGATATTCATTTTCTTCTATTTCACCTTCGTATTTATTTTGATTATAGAAATCATCGAATCTATCCAGAATTTCCCCCTCAAATTCGATTAGAGTACCCAAAACTAGCTGCCAGATCGGGTATGGATCCCACACCCACATCGTGTCGACACGGGTGCGGACACAAAGTGAAGAGTCCGAGCAACTTAGGTTATGAGGAGGATATTGTGTGTGATTCAAACTTACGATGTAATTTACTTTATGTAAATGTTAATTCTGGGAATAGATAATACACCACCAGCAAAAAGTTCCCTTATCTTGGCTTATATGAAAAAAGAAAGGTCACATGAAACAAGAGTGCTTATGTATTTATTGAAGTTATCGCCTAAATATAGATGGTGACGTGATAAATTAGGATCTTGGGACACCTGAAATATAAACAAGCCCTAGCTAGAGTATTGCTGCTTGTGTTTAATTTGCTAGTTCCTTCATTGGTTGGTGATTTCAGTGTGCTAGTTAATAGATCAATGCTCGTACCATAGATATGATCCTTCAAATTTGATTTCCGTGGTTTCTTGTAACCAGAGACTGGCTACTGGAGAGTGGTTCACTGCTCGAGTTTCCTCCTGTGGATTGTTTCACATTGCTTATCCTAGTGCTCCAGAGCCACTAAAGAATGAACTGAGAACCATATATAGCCAACTTTGTCAAGATGATATGCCTA</genome_strand>
        <mrna_strand>AAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCATTTCTAAGTGAGAACAACGATGATGATGACGAAGTTCTTCTTGCAATGGCTGAAGAGTTGGGCATGTTTATTCCATATGTTGGAGGGGTTGAACATGCGCGTGTATTGCTTCCACCCTTAGAAGGACTTTGTAGTGTTGAGGAGACTTGTGTTAGGGAAAAGGCAGTTGAGTCATTATGCAAAATTGGGTCCCAAATGAAGGAATCGGATTTGGTGGAATCATTTATTCCACTTGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGGCTACTGGAGAGTGGTTCACTGCTCGAGTTTCCTCCTGTGGATTGTTTCACATTGCTTATCCTAGTGCTCCAGAGCCACTAAAGAATGAACTGAGAACCATATATAGCCAACTTTGTCAAGATGATATGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702613" ref_strand="+" ref_description="SGN-E702613 [FA19AH03]">
      <seq>actggttgctggagagtggttcactgctcgagtttcctcctgtggattgtttcacattgcttatcctagtgctccagagccactaaagaatgaactgagaaccatatatagccaactttgtcaagatgatatgcctatggtgaggagagcagctgccacaaatcttggaaagtttgctgcaactattgaacaaccccatctgaagaccgacatcatgtcaatgtttgagaccctgacacaggatgatcaagattctgtccgtttattggctgtcgaggattgtgctgctttggggaagctgctggagcctaaagactgtgtagcacaaattctttccgtcatagttaattttgcgcaggataagtcttggcgtgttcgttacatggttgcaaatcaactctatgatctttgtgaggcagttggaccagaggctaccaggacggatttggtccctgcctatgttcggctacttcgtgataatgaggctgaagtgcgtatagctgctgctggcaaggtgactaagttttgccgtattttgagccctgaacttgctatccagcatatccttccttgtgtaaaggaactatcatcagattcatcccagcatgttcgttctgctttggcttcagttatcatgggaatggcacctattttaggaaaggatgcaactattgagcagcttctcccgattttcctctctcttctgaaggatgagtttcctgatgttcgtttgaatattatcagtaagcttgatcaagtaaacccagtaatgggaattgatttgctctccccaatcactgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62819" stop="66776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63119" g_stop="63363" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63364" i_stop="64318" i_length="955">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64319" g_stop="64431" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="358" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64432" i_stop="64995" i_length="564">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64996" g_stop="65075" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="438" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65076" i_stop="65352" i_length="277">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65353" g_stop="65494" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="580" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65495" i_stop="65664" i_length="170">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65665" g_stop="65745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="661" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65746" i_stop="66187" i_length="442">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66188" g_stop="66292" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="766" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66293" i_stop="66439" i_length="147">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66440" g_stop="66476" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="804" r_length="38" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E702613" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63119" e_stop="63363"/>
          <exon e_start="64319" e_stop="64431"/>
          <exon e_start="64996" e_stop="65075"/>
          <exon e_start="65353" e_stop="65494"/>
          <exon e_start="65665" e_stop="65745"/>
          <exon e_start="66188" e_stop="66292"/>
          <exon e_start="66440" e_stop="66476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCTACTGGAGAGTGGTTCACTGCTCGAGTTTCCTCCTGTGGATTGTTTCACATTGCTTATCCTAGTGCTCCAGAGCCACTAAAGAATGAACTGAGAACCATATATAGCCAACTTTGTCAAGATGATATGCCTATGGTGAGGAGAGCAGCTGCCACAAATCTTGGAAAGTTTGCTGCAACTATTGAACAACCCCATCTGAAGACCGACATCATGTCAATGTTTGAGACCCTGACACAGGATGGTATGGTATTTTCATTATGTACTCTTTGTATTTTATCCTTTCTTTGGAATGACACAATTTGCTTTTGCCTTTCTGGAAGTGGTCTCTTTTTGGAGCAAAATTCTTTCTTGATCCTGGATTCCTTGAACTCCTGTTAATTCTGTTGGCTCTTTATGGTTCTCTTTAGTCTTTATGTTAACATAGTGTCTGGGAATAATTGGTATAGTTTTTGAGAATTATTTTGGAATGAGCATTTCCATGTAGGCTCTGCTTTGATGTTAGGATTGGTTCTAGGACTTGGGCTGTTCAATATGCTGTCTGAGTAAATAACAGTTCAGAATTATTTTAGTTCATCATTTTCTGTTGACTCTAGTAGCACAGCTCATAATAGTGCCTAGGTATGAGAGAAGTATTGGAAAGCATGGTAAAAATTTGTGTTGATATACCCGTCTTTATTCAACAGTTAAATGAACATGCAAAAAGGTGCAAGTCATTTGAAATACAGCACGCATCTGGTGCTCTTTTGTCTCACTAAAATATACCGTACTTCTCTCAAAAAATTCTGCGTGAGGTTTTTGTTTGTGTGCATTTTCTAGGTACATCTTCAAGGGTTCTTTATTGTTCCTTAGATTTGAGTACATACACTCATCTGAGATAGAGGAACAATTATCATAGTCTATATTACTTGGACTGTTTTATTTTGTCTTAAGATATCACAGTTCATGGATGTGGGATATACTTTAGTATACACTAAAACTTGATAAAGGTTGAGCTATCCATTATGAAATCTTGTCTAGCCCCCCCTGTTCATAGAAAAAGTTCCATAGCCTGATCAATTTCTATTTGTCAAGAACTAGCCTGATATGTGCGTTGTACCAATTTTCTGTTAGTGGCTAATATTTGGTGTTTTTGTTGAGCTCTATTTGGTTTACTTAATTTATATCAGTCTGACTAAGGAGGAATTGGTTATATTCAGATCAAGATTCTGTCCGTTTATTGGCTGTCGAGGATTGTGCTGCTTTGGGGAAGCTGCTGGAGCCTAAAGACTGTGTAGCACAAATTCTTTCCGTCATAGTTAATTTTGCGCAGGTTAGCCACCAGCTTCACATTAATATTTTTATTGCATGCAAATTCAGTGATGAAGATTTCTGCCATGTGGTCTTTCTGGAAATCTTATAGATTGGTAATATTTTTGCTGTATTTCGTTTGTCACGTGTGACTGTAACTTTGCTCAGTCCCGACACTTTAAGCTTGACGAGGTATTGGGCGATTGCCTGGGAGTTTTTTGCTGTTTCATATTTCCCCAACTATAGCTGATAAGAAGCTTAAATTGTTAGCATGAGCTGAAAGTATATGCATATTGATGCATAGGCTGAAAAAATCCTAATGAATCCTTTTTTATTCATTATGAGTTGTGCACAACTAACTTTTGCTCTGTCATAGAAGGTAGTTCAAAAGGATGCAAAATGACATTGATGATATAACCCTTATGCTGATATTTCCTTTTTACCTTTCTGGAATTTGGTTCTTTTGCTTATTTGTATCAACAACTAATGCAATATTTTCATACAACCAAACAGTGCTGCTTTCTCAGTTATAGTGTCATATGGAATGTAGTTACTGATGTTAATACCTGTTCATTGATTTGAACAGGATAAGTCTTGGCGTGTTCGTTACATGGTTGCAAATCAACTCTATGATCTTTGTGAGGCAGTTGGACCAGAGGCTACCAGGTAGATATTTGTGATACTGTGCATTTCTCATGTTCTTTAATCTGTGTTACGGTTTACACTTTTGATAACTCAACCTTGCCAGTCAAGTGATGTATGTATTTTTTGTTCCTGAATTTTCTGTTTGTTTGTTTTTTAATGCTCAGAACTGAATATGATGTGGATATGAATTTCTCACAAATTTTGGCTCACCACAATGATTTCTTTTTCTTTTTCTATTTTTTTTCCTAGCGATTTCTCTCCCTTATGACTAATTCATGACCCTCATAAAATTCATCAGGACGGATTTGGTCCCTGCCTATGTTCGGCTACTTCGTGATAATGAGGCTGAAGTGCGTATAGCTGCTGCTGGCAAGGTGACTAAGTTTTGCCGTATTTTGAGCCCTGAACTTGCTATCCAGCATATCCTTCCTTGTGTAAAGGTAGAAACTTATAAAGTTCCTTTTCTATGTTACTGTCCCATATTCCTATATAATGGTTTCTACGTATAATGTCTCCTTGTGTGATTCCTTTTCTTAGTACATCTAAATATCAACCCTTGAATGATCCTTAATGAGTTTGTAAGTTTAACTTAACCACACTTTTTTCATAGGAACTATCATCAGATTCATCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATCATGGGAATGGCACCTATTTTAGGAAAGGTATAAATTCCCTCGTCAGTGCACCAAATTATTGAGTTTGCTCTCCCATTATGGTTATATTGGTAAAGTAAAGTTCAGGTTCTGTCCACGTTGCTTCTTATTGTTGTCCTAGTATAACATGCTCATTCCCTTGTGCTTCTTTAACTTCTCTTACCTTTTCTGGAGTCCAAAGTTGGGATTGTATTTTAGCAGTATGTTGTCGATTACTGTAAGCACATGATTAGCAGCTTATCCTGAAGAAATTTTTCTTCCGTCTTACAGCCAGTATGGTGTTTATGTTTTTTTTGACTTTGGTGATTGTCATTTATCGTTCTCACTATAGTTTTGAACTTAAAATAATACCTTTTCCTGGAATAGGCTCGACTTTCTTTGTGGCTTTGTCCAATGTTTACTCAATGATGTCTCTAACAGGAGTTTAATGTTTCTGTACTGGTTATTATAGGATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAGGTTAGCTATAATTCATTAATATAACTCTGTAGTCTGTACTTGAAGTTACTTCGCCTTATTTGAGGCTTGGTGGCTTCTGAATCTACATACCTGTAGGCTGTATCATGTTTTTCATGTCCCCCTATTTCAAACTAAATCTTATTGCAGGTAATTGGAATTGATTTGCTCT-CCCAATCACTGCTGC</genome_strand>
        <mrna_strand>ACTGGTTGCTGGAGAGTGGTTCACTGCTCGAGTTTCCTCCTGTGGATTGTTTCACATTGCTTATCCTAGTGCTCCAGAGCCACTAAAGAATGAACTGAGAACCATATATAGCCAACTTTGTCAAGATGATATGCCTATGGTGAGGAGAGCAGCTGCCACAAATCTTGGAAAGTTTGCTGCAACTATTGAACAACCCCATCTGAAGACCGACATCATGTCAATGTTTGAGACCCTGACACAGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGATTCTGTCCGTTTATTGGCTGTCGAGGATTGTGCTGCTTTGGGGAAGCTGCTGGAGCCTAAAGACTGTGTAGCACAAATTCTTTCCGTCATAGTTAATTTTGCGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGTCTTGGCGTGTTCGTTACATGGTTGCAAATCAACTCTATGATCTTTGTGAGGCAGTTGGACCAGAGGCTACCAG.....................................................................................................................................................................................................................................................................................GACGGATTTGGTCCCTGCCTATGTTCGGCTACTTCGTGATAATGAGGCTGAAGTGCGTATAGCTGCTGCTGGCAAGGTGACTAAGTTTTGCCGTATTTTGAGCCCTGAACTTGCTATCCAGCATATCCTTCCTTGTGTAAAG..........................................................................................................................................................................GAACTATCATCAGATTCATCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATCATGGGAATGGCACCTATTTTAGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCCA...................................................................................................................................................GTAATGGGAATTGATTTGCTCTCCCCAATCACTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339486" ref_strand="+" ref_description="SGN-E339486 [cTOF-4-P16]">
      <seq>ccgtattttgagccctgaacttgctatccagcatatccttccttgtgtaaaggaactatcatcagattcatcccagcatgttcgttctgctttggcttcagttatcatgggaatggcacctattttaggaaaggatgcaactattgagcagcttctcccgattttcctctctcttctgaaggatgagtttcctgatgttcgtttgaatattatcagtaagcttgatcaagtaaaccaggtaattggaattgatttgctctcccaatcactgctgccagcaattgttgaacttgcagaagatagacactggagggttcggcttgcaataattgagtacatacctctattggcaagtcagctgggtgttggcttttttgatgacaagcttggtgctctgtgcatgcaatggctaaaagataaggtttactctattagagatgcagcagcaaacaatgtaaagcgccttgctgaggaatttggtccaaaatgggcaatggagcatataattccacaggtgctggatatgattaatgacccacattatctttaccggatgaccatccttcatgcaatttctcttcttgcccctgtcttgggctcagaaattgcttgctccaaactcctgccggttataattactgcatcaaaagacagggtaccgaatatcaagttcaatgtggctaangtgttgcagtctgttattccaatagttgaccaatctgttgtggagagcacaattcgaccgtgtttggttgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65143" stop="68771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65443" g_stop="65494" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65495" i_stop="65664" i_length="170">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65665" g_stop="65745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="133" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65746" i_stop="66187" i_length="442">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66188" g_stop="66292" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="238" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66293" i_stop="66439" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66440" g_stop="66622" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="421" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66963" g_stop="67055" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="514" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67400" g_stop="67539" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="654" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67618" g_stop="67684" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="721" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67685" i_stop="68432" i_length="748">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68433" g_stop="68471" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="760" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E339486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65443" e_stop="65494"/>
          <exon e_start="65665" e_stop="65745"/>
          <exon e_start="66188" e_stop="66292"/>
          <exon e_start="66440" e_stop="66622"/>
          <exon e_start="66963" e_stop="67055"/>
          <exon e_start="67400" e_stop="67539"/>
          <exon e_start="67618" e_stop="67684"/>
          <exon e_start="68433" e_stop="68471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATTTTGAGCCCTGAACTTGCTATCCAGCATATCCTTCCTTGTGTAAAGGTAGAAACTTATAAAGTTCCTTTTCTATGTTACTGTCCCATATTCCTATATAATGGTTTCTACGTATAATGTCTCCTTGTGTGATTCCTTTTCTTAGTACATCTAAATATCAACCCTTGAATGATCCTTAATGAGTTTGTAAGTTTAACTTAACCACACTTTTTTCATAGGAACTATCATCAGATTCATCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATCATGGGAATGGCACCTATTTTAGGAAAGGTATAAATTCCCTCGTCAGTGCACCAAATTATTGAGTTTGCTCTCCCATTATGGTTATATTGGTAAAGTAAAGTTCAGGTTCTGTCCACGTTGCTTCTTATTGTTGTCCTAGTATAACATGCTCATTCCCTTGTGCTTCTTTAACTTCTCTTACCTTTTCTGGAGTCCAAAGTTGGGATTGTATTTTAGCAGTATGTTGTCGATTACTGTAAGCACATGATTAGCAGCTTATCCTGAAGAAATTTTTCTTCCGTCTTACAGCCAGTATGGTGTTTATGTTTTTTTTGACTTTGGTGATTGTCATTTATCGTTCTCACTATAGTTTTGAACTTAAAATAATACCTTTTCCTGGAATAGGCTCGACTTTCTTTGTGGCTTTGTCCAATGTTTACTCAATGATGTCTCTAACAGGAGTTTAATGTTTCTGTACTGGTTATTATAGGATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAGGTTAGCTATAATTCATTAATATAACTCTGTAGTCTGTACTTGAAGTTACTTCGCCTTATTTGAGGCTTGGTGGCTTCTGAATCTACATACCTGTAGGCTGTATCATGTTTTTCATGTCCCCCTATTTCAAACTAAATCTTATTGCAGGTAATTGGAATTGATTTGCTCTCCCAATCACTGCTGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAGGTTTGTTCAAAGCTTTCTGTTACTTGTTATTCTGCTGATAATTTAGAAAGAAAGAACTCCGAATATTCTAGTTTATGTCTGGAGAAAGTGATTGTATTCAAATGCCTGGATAAAGTGATTGTAACCAAGTAATATTCAATACAACCTTTTGAGATCATATCTGATGCTACTTCTTGTATTGGCCACTTAGTATCTTGAATATTACTTGTGCATCCTTCCTTACTTCTTTCAGGAGATACTCAAAATGAAATGATACAAATTGCATCACACTGTGCAACTCTTTGTAATGTTCTTGTATTTCTCTTTTATGTCTTCCTTATGATCATTCTTGGATTTGCAGGTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAGGTTTTCCTATTGCCTTCAATAAGCTGGTTGATAGTTGGTACTGCGATAATTTAGCAGTTTCTTCTTCAAGCCAAAAGTATTTATTTCTATTGTTATTGAATCATACATTGTTTATCACTGATTATGAAGAGATCATTTCTTTGCCTGTTCTTTAAAGAGTCATGATATGTGGAATTTCTTTTCCAGAATTAGTACATTGCTGTATGATGTTCCGGAATCAATATCTTTTATTGGACATTATCTGAATTCAGTTTTAACTATTAGAATCTTTCACATTTCTTTTGGTTGGGGGTGGGACGTCTTAGGTTTTCCTCTTCAAATAACTTGACTGATTCATTTTTCAGGTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAGGTTAATCTTCAGTATATTTAGGATTTACCATTTTGTTGGGTAATTGTTACACTTACAGGTCTAAATTTTATGTTCCAGGGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCTGTAAGTGCCAATTTACTTCTCATTGGTTTAAAGGCTGACATGTGTATATTTGTGTTTGTCATGCATTTGCTTTTATTTTTGTAAACTAGACTGTCTAATGAGCAACTCCACCTACACTAGTTAGCCTATTTGAACTCCGTATAACTAGGCCCAAGTCCAACAAAGTAGGAGAGTTGTGCTAGGTTGAAGGTAAGTATAAAATAGGCAAATTATGATGATTGTTTGTATTAACGAAATGCATTTGGTCACACTCTGCTTGGCACGAGTTACATCAGCATCCAGGTATAACAATAAATGAACGAAATGAACTCGGCCGAACAGAGCAGAATGGAAAATAAAGATTTGTATTCATAGTGTGTCTACTGGGCCTTAGTAATAATGTAATTACTAATATGTTCATGGAAGTTAGAAGTGAATGTTCGGCTTGAAATACTTGATGGAGACATTTCTTTATCATCTCATGAATTCTGTGAGATGTGTTTTTATTGCTGGAAATGTGGAAAGAACAAAAATCTGAGTGATGACTTGCCAGTCAAATATTTCACCATTTTCTTTTTATGTGAAATTCTAATCTGGTATGAAAATCTTGGTAGTGTGTGTTTAATAGTCAATTAATTTGTATTCACTGGAAATTTGTATTTTTTAGGGGGTGGAGGTAAGATTTGAAAAATGAAAAAGAAAAAGAGGAAAGAGTTTGGATCTCTAATTTATGAGTCTGTCAATATTAACCCCGAGTCTTTATGCACAGGTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</genome_strand>
        <mrna_strand>CCGTATTTTGAGCCCTGAACTTGCTATCCAGCATATCCTTCCTTGTGTAAAG..........................................................................................................................................................................GAACTATCATCAGATTCATCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATCATGGGAATGGCACCTATTTTAGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAG...................................................................................................................................................GTAATTGGAATTGATTTGCTCTCCCAATCACTGCTGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG....................................................................................................................................................................................................................................................................................................................................................GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG........................................................................................................................................................................................................................................................................................................................................................GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG..............................................................................GGTACCGAATATCAAGTTCAATGTGGCTAANGTGTTGCAGTCTGTTATTCCAATAGTTGACCAATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312219" ref_strand="+" ref_description="SGN-E312219 [cTOA-5-G19]">
      <seq>tggcacctattttaggaaaggatgcaactattgagcagcttctcccgattttcctctctcttctgaaggatgagtttcctgatgttcgtttgaatattatcagtaagcttgatcaagtaaaccaggtaattggaattgatttgctctcccaatcactgctgccagcaattgttgaacttgcagaagatagacactggagggttcggcttgcaataattgagtacatacctctattggcaagtcagctgggtgttggcttttttgatgacaagcttggtgctctgtgcatgcaatggctaaaagataaggtttactctattagagatgcagcagcaaacaatgtaaagcgccttgctgaggaatttggtccaaaatgggcaatggagcatataattccacaggtgctggatatgattaatgacccacattatctttaccggatgaccatccttcatgcaatttctcttcttgcccctgtcttgggctcagaaattgcttgctccaaactcctgccggttataattactgcatcaaaagacagggtaccgaatatcaagttcaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65426" stop="67942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65726" g_stop="65745" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65746" i_stop="66187" i_length="442">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66188" g_stop="66292" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="125" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66293" i_stop="66439" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66440" g_stop="66622" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="308" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66963" g_stop="67055" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="401" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67400" g_stop="67539" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="541" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67618" g_stop="67642" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="566" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E312219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65726" e_stop="65745"/>
          <exon e_start="66188" e_stop="66292"/>
          <exon e_start="66440" e_stop="66622"/>
          <exon e_start="66963" e_stop="67055"/>
          <exon e_start="67400" e_stop="67539"/>
          <exon e_start="67618" e_stop="67642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACCTATTTTAGGAAAGGTATAAATTCCCTCGTCAGTGCACCAAATTATTGAGTTTGCTCTCCCATTATGGTTATATTGGTAAAGTAAAGTTCAGGTTCTGTCCACGTTGCTTCTTATTGTTGTCCTAGTATAACATGCTCATTCCCTTGTGCTTCTTTAACTTCTCTTACCTTTTCTGGAGTCCAAAGTTGGGATTGTATTTTAGCAGTATGTTGTCGATTACTGTAAGCACATGATTAGCAGCTTATCCTGAAGAAATTTTTCTTCCGTCTTACAGCCAGTATGGTGTTTATGTTTTTTTTGACTTTGGTGATTGTCATTTATCGTTCTCACTATAGTTTTGAACTTAAAATAATACCTTTTCCTGGAATAGGCTCGACTTTCTTTGTGGCTTTGTCCAATGTTTACTCAATGATGTCTCTAACAGGAGTTTAATGTTTCTGTACTGGTTATTATAGGATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAGGTTAGCTATAATTCATTAATATAACTCTGTAGTCTGTACTTGAAGTTACTTCGCCTTATTTGAGGCTTGGTGGCTTCTGAATCTACATACCTGTAGGCTGTATCATGTTTTTCATGTCCCCCTATTTCAAACTAAATCTTATTGCAGGTAATTGGAATTGATTTGCTCTCCCAATCACTGCTGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAGGTTTGTTCAAAGCTTTCTGTTACTTGTTATTCTGCTGATAATTTAGAAAGAAAGAACTCCGAATATTCTAGTTTATGTCTGGAGAAAGTGATTGTATTCAAATGCCTGGATAAAGTGATTGTAACCAAGTAATATTCAATACAACCTTTTGAGATCATATCTGATGCTACTTCTTGTATTGGCCACTTAGTATCTTGAATATTACTTGTGCATCCTTCCTTACTTCTTTCAGGAGATACTCAAAATGAAATGATACAAATTGCATCACACTGTGCAACTCTTTGTAATGTTCTTGTATTTCTCTTTTATGTCTTCCTTATGATCATTCTTGGATTTGCAGGTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAGGTTTTCCTATTGCCTTCAATAAGCTGGTTGATAGTTGGTACTGCGATAATTTAGCAGTTTCTTCTTCAAGCCAAAAGTATTTATTTCTATTGTTATTGAATCATACATTGTTTATCACTGATTATGAAGAGATCATTTCTTTGCCTGTTCTTTAAAGAGTCATGATATGTGGAATTTCTTTTCCAGAATTAGTACATTGCTGTATGATGTTCCGGAATCAATATCTTTTATTGGACATTATCTGAATTCAGTTTTAACTATTAGAATCTTTCACATTTCTTTTGGTTGGGGGTGGGACGTCTTAGGTTTTCCTCTTCAAATAACTTGACTGATTCATTTTTCAGGTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAGGTTAATCTTCAGTATATTTAGGATTTACCATTTTGTTGGGTAATTGTTACACTTACAGGTCTAAATTTTATGTTCCAGGGTACCGAATATCAAGTTCAATGTG</genome_strand>
        <mrna_strand>TGGCACCTATTTTAGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAG...................................................................................................................................................GTAATTGGAATTGATTTGCTCTCCCAATCACTGCTGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG....................................................................................................................................................................................................................................................................................................................................................GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG........................................................................................................................................................................................................................................................................................................................................................GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG..............................................................................GGTACCGAATATCAAGTTCAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311830" ref_strand="+" ref_description="SGN-E311830 [cLEZ-9-H16]">
      <seq>tgccagcaattgttgaacttgcagaagatagacactggagggttcggcttgcaataattgagtacatacctctattggcaagtcagctgggtgttggcttttttgatgacaagcttggtgctctgtgcatgcaatggctaaaagataaggtttactctattagagatgcagcagcaaacaatgtaaagcgccttgctgaggaatttggtccaaaatgggcaatggagcatataattccacaggtgctggatatgattaatgacccacattatctttaccggatgaccatccttcatgcaatttctcttcttgcccctgtcttgggctcagaaattgcttgctccaaactcctgccggttataattactgcatcaaaagacagggtaccgaatatcaagttcaatgtggctaaggtgttgcagtctgttattccaatagttgaacaatctgttgtggagagcacaattcgaccgtgtttggttgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="+" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66174" stop="68771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66474" g_stop="66622" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66963" g_stop="67055" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="242" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67400" g_stop="67539" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="382" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67618" g_stop="67684" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="449" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67685" i_stop="68432" i_length="748">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68433" g_stop="68471" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="488" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="+" ref_id="SGN-E311830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66474" e_stop="66622"/>
          <exon e_start="66963" e_stop="67055"/>
          <exon e_start="67400" e_stop="67539"/>
          <exon e_start="67618" e_stop="67684"/>
          <exon e_start="68433" e_stop="68471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAGGTTTGTTCAAAGCTTTCTGTTACTTGTTATTCTGCTGATAATTTAGAAAGAAAGAACTCCGAATATTCTAGTTTATGTCTGGAGAAAGTGATTGTATTCAAATGCCTGGATAAAGTGATTGTAACCAAGTAATATTCAATACAACCTTTTGAGATCATATCTGATGCTACTTCTTGTATTGGCCACTTAGTATCTTGAATATTACTTGTGCATCCTTCCTTACTTCTTTCAGGAGATACTCAAAATGAAATGATACAAATTGCATCACACTGTGCAACTCTTTGTAATGTTCTTGTATTTCTCTTTTATGTCTTCCTTATGATCATTCTTGGATTTGCAGGTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAGGTTTTCCTATTGCCTTCAATAAGCTGGTTGATAGTTGGTACTGCGATAATTTAGCAGTTTCTTCTTCAAGCCAAAAGTATTTATTTCTATTGTTATTGAATCATACATTGTTTATCACTGATTATGAAGAGATCATTTCTTTGCCTGTTCTTTAAAGAGTCATGATATGTGGAATTTCTTTTCCAGAATTAGTACATTGCTGTATGATGTTCCGGAATCAATATCTTTTATTGGACATTATCTGAATTCAGTTTTAACTATTAGAATCTTTCACATTTCTTTTGGTTGGGGGTGGGACGTCTTAGGTTTTCCTCTTCAAATAACTTGACTGATTCATTTTTCAGGTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAGGTTAATCTTCAGTATATTTAGGATTTACCATTTTGTTGGGTAATTGTTACACTTACAGGTCTAAATTTTATGTTCCAGGGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCTGTAAGTGCCAATTTACTTCTCATTGGTTTAAAGGCTGACATGTGTATATTTGTGTTTGTCATGCATTTGCTTTTATTTTTGTAAACTAGACTGTCTAATGAGCAACTCCACCTACACTAGTTAGCCTATTTGAACTCCGTATAACTAGGCCCAAGTCCAACAAAGTAGGAGAGTTGTGCTAGGTTGAAGGTAAGTATAAAATAGGCAAATTATGATGATTGTTTGTATTAACGAAATGCATTTGGTCACACTCTGCTTGGCACGAGTTACATCAGCATCCAGGTATAACAATAAATGAACGAAATGAACTCGGCCGAACAGAGCAGAATGGAAAATAAAGATTTGTATTCATAGTGTGTCTACTGGGCCTTAGTAATAATGTAATTACTAATATGTTCATGGAAGTTAGAAGTGAATGTTCGGCTTGAAATACTTGATGGAGACATTTCTTTATCATCTCATGAATTCTGTGAGATGTGTTTTTATTGCTGGAAATGTGGAAAGAACAAAAATCTGAGTGATGACTTGCCAGTCAAATATTTCACCATTTTCTTTTTATGTGAAATTCTAATCTGGTATGAAAATCTTGGTAGTGTGTGTTTAATAGTCAATTAATTTGTATTCACTGGAAATTTGTATTTTTTAGGGGGTGGAGGTAAGATTTGAAAAATGAAAAAGAAAAAGAGGAAAGAGTTTGGATCTCTAATTTATGAGTCTGTCAATATTAACCCCGAGTCTTTATGCACAGGTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</genome_strand>
        <mrna_strand>TGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG....................................................................................................................................................................................................................................................................................................................................................GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG........................................................................................................................................................................................................................................................................................................................................................GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG..............................................................................GGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287942" ref_strand="+" ref_description="SGN-E287942 [cLES-7-I11]">
      <seq>agctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattctctctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77970" stop="75867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77670" g_stop="77610" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="244" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76483" g_stop="76167" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="561" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E287942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77670" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTCTC</genome_strand>
        <mrna_strand>AGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349340" ref_strand="+" ref_description="SGN-E349340 [cTOS-1-C20]">
      <seq>gatagagagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactactgtatcgtgttgatggctccaagataatgaacgtgtacttggaccccaacgaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggtgcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattctgggtttgtttattgaaaacttgggtttcattcagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77198" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76898" g_stop="76742" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76168" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="474" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E349340" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76898" e_stop="76742"/>
          <exon e_start="76483" e_stop="76168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTA-GGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTCT</genome_strand>
        <mrna_strand>GATAGAGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTACTGTATCGTGTTGATGGCTCCAAGATAATGAAC..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAACGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTGCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTCTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283557" ref_strand="+" ref_description="SGN-E283557 [cLER-12-H4]">
      <seq>gaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattctctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76785" stop="75869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76745" g_stop="76742" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76169" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="319" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="331"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E283557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76745" e_stop="76742"/>
          <exon e_start="76483" e_stop="76169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTC</genome_strand>
        <mrna_strand>GAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695788" ref_strand="+" ref_description="SGN-E695788 [LH_Ea07H02](-)">
      <seq>acaagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaggacctatacatcaattctgcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccctacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaaaataatgaaggtgtatttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttaatgattgaaaacttgggtttcattctcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78396" stop="75871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78098" g_stop="78007" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="93" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="167" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="291" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="474" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76483" g_stop="76171" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="787" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="788" polyA_stop="810"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E695788" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78098" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTC</genome_strand>
        <mrna_strand>CAAGCAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAGGACCTATACATCAATTCTGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCCTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAAATAATGAAG..................................................................................................................................................................................................................................................................GTGTATTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTAATGATTGAAAACTTGGGTTTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735013" ref_strand="+" ref_description="SGN-E735013 [LB14AG09]">
      <seq>caatgataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78355" stop="75871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78055" g_stop="78007" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="123" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="247" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="430" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76483" g_stop="76171" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="743" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="760"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E735013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78055" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTC</genome_strand>
        <mrna_strand>CAATGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278740" ref_strand="+" ref_description="SGN-E278740 [cLER-2-A24]">
      <seq>gaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgngtttgtttattgaaaacttgggtttcattctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77160" stop="75871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76860" g_stop="76742" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76171" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="432" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="442"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E278740" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76860" e_stop="76742"/>
          <exon e_start="76483" e_stop="76171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTC</genome_strand>
        <mrna_strand>GACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGNGTTTGTTTATTGAAAACTTGGGTTTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553295" ref_strand="+" ref_description="SGN-E553295 [cTSB-4-E13]">
      <seq>aaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78338" stop="75872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78038" g_stop="78007" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="106" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="230" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="413" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76483" g_stop="76172" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="725" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="735"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E553295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78038" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCT</genome_strand>
        <mrna_strand>AACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373847" ref_strand="+" ref_description="SGN-E373847 [TUS-31-E20](-)">
      <seq>aaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78172" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77872" g_stop="77836" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="161" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="344" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76483" g_stop="76173" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="655" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="666"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E373847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77872" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</genome_strand>
        <mrna_strand>AAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285096" ref_strand="-" ref_description="SGN-E285096 [cLER-20-A13]">
      <seq>gactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattcaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77980" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77680" g_stop="77610" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="254" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76483" g_stop="76173" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="565" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="584"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E285096" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285096" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77680" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</genome_strand>
        <mrna_strand>GACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732210" ref_strand="+" ref_description="SGN-E732210 [LB01CC07]">
      <seq>ggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77974" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77674" g_stop="77610" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="248" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76483" g_stop="76173" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="559" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="571"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E732210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77674" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</genome_strand>
        <mrna_strand>GGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713212" ref_strand="+" ref_description="SGN-E713212 [FB08AB05]">
      <seq>gctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77170" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76870" g_stop="76742" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76173" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="440" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="454"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E713212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76870" e_stop="76742"/>
          <exon e_start="76483" e_stop="76173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</genome_strand>
        <mrna_strand>GCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539901" ref_strand="+" ref_description="SGN-E539901 [TUS-59-O11](-)">
      <seq>gtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77107" stop="75873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76807" g_stop="76742" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76173" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="377" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="412"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E539901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76807" e_stop="76742"/>
          <exon e_start="76483" e_stop="76173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</genome_strand>
        <mrna_strand>GTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357647" ref_strand="+" ref_description="SGN-E357647 [cTOS-24-O7]">
      <seq>ttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77933" stop="75874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77633" g_stop="77610" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="207" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76483" g_stop="76174" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="517" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E357647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77633" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATT</genome_strand>
        <mrna_strand>TTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539904" ref_strand="+" ref_description="SGN-E539904 [TUS-59-O11]">
      <seq>gtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77107" stop="75874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76807" g_stop="76742" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76174" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="376" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E539904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76807" e_stop="76742"/>
          <exon e_start="76483" e_stop="76174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATT</genome_strand>
        <mrna_strand>GTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238652" ref_strand="+" ref_description="SGN-E238652 [cLEL-9-I1](-)">
      <seq>tcagcagttagcggaaagctcccaggcatagatgatgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaaacttgggtttcattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76729" stop="75874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76429" g_stop="76177" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="277"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E238652" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76429" e_stop="76177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTC</genome_strand>
        <mrna_strand>TCAGCAGTTAGCGGAAAGCTCCCAGGCATAGATGATGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539463" ref_strand="+" ref_description="SGN-E539463 [TUS-59-D20](-)">
      <seq>tagttgcctctcactagcagtttctgttttgattggttagtgaacagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcatagattttgggtttgtttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78882" stop="75887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78582" g_stop="78563" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78007" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="132" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="206" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="330" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="513" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76181" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="816" r_length="303" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E539463" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78582" e_stop="78563"/>
          <exon e_start="78118" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGG</genome_strand>
        <mrna_strand>TAGTTGCCTCTCACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711634" ref_strand="+" ref_description="SGN-E711634 [FB02CB11]">
      <seq>cgattgcttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagtaaaaccatgttgctatgtcatagattttgggtttgttattgaaaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78913" stop="75882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78618" g_stop="78563" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="141" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="215" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="339" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="522" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76182" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="822" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E711634" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78618" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGG</genome_strand>
        <mrna_strand>CGATTGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAG-TAAAACCATGTTGCTATGTCATAGATTTTGGGTTTG-TTATTGAAAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691948" ref_strand="+" ref_description="SGN-E691948 [LH_Ea07H02]">
      <seq>tcggtttgtagttgcctctcacaagcagatctgtgaagatgcccatttcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaggacctatacatcaattctgcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccctacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaaaataatgaaggtgtatttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgtgttagaatgcatagaactatgtgaaattcctatcaatattaagttaaaaccatgttgctatgtcatagattttgggtttgtttattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78891" stop="75888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78591" g_stop="78563" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="113" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="187" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="311" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="494" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76188" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="790" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E691948" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78591" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAA</genome_strand>
        <mrna_strand>TC-GGTTTGTAGTTGCCTCTCACAAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGCCCATTTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAGGACCTATACATCAATTCTGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCCTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAAATAATGAAG..................................................................................................................................................................................................................................................................GTGTATTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTGTTAGAATGCATAGAACTATGTGAAATTCCTATCAATATTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350498" ref_strand="+" ref_description="SGN-E350498 [cTOS-5-I21]">
      <seq>gaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77116" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76816" g_stop="76742" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76204" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="355" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E350498" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76816" e_stop="76742"/>
          <exon e_start="76483" e_stop="76204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTG</genome_strand>
        <mrna_strand>GAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352890" ref_strand="+" ref_description="SGN-E352890 [cTOS-11-J3]">
      <seq>gaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77116" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76816" g_stop="76742" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76204" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="355" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E352890" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76816" e_stop="76742"/>
          <exon e_start="76483" e_stop="76204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTG</genome_strand>
        <mrna_strand>GAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218889" ref_strand="+" ref_description="SGN-E218889 [cLEL-18-I10](-)">
      <seq>tgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaactaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcataaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77129" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76829" g_stop="76742" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76210" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="363" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="379"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E218889" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76829" e_stop="76742"/>
          <exon e_start="76483" e_stop="76210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAAC-AACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAG</genome_strand>
        <mrna_strand>TGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACTAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227994" ref_strand="+" ref_description="SGN-E227994 [cLEL-39-N18](-)">
      <seq>ccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76772" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76472" g_stop="76210" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="280"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E227994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76472" e_stop="76210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAG</genome_strand>
        <mrna_strand>CCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309692" ref_strand="+" ref_description="SGN-E309692 [cLEY-26-M19]">
      <seq>ctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccatgttgctatgtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77169" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76869" g_stop="76742" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76214" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="398" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="412"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E309692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76869" e_stop="76742"/>
          <exon e_start="76483" e_stop="76214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTC</genome_strand>
        <mrna_strand>CTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357890" ref_strand="+" ref_description="SGN-E357890 [cTOS-24-J1]">
      <seq>tcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaaagttaaaacatggtgctatggtcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78372" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78072" g_stop="78007" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="140" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="264" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="447" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76483" g_stop="76217" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="714" r_length="267" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="735"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E357890" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78072" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTAT</genome_strand>
        <mrna_strand>TCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAAGTTAAAACATGGTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279258" ref_strand="-" ref_description="SGN-E279258 [cLEL-4-E14](-)">
      <seq>gcacgaggctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtactccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccatttntgttttagaatgcagagaactatgtgaaattcctatcaantttaagttaaaaccatgttgctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77172" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76875" g_stop="76742" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76217" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="401" r_length="268" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="421"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E279258" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279258" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76875" e_stop="76742"/>
          <exon e_start="76483" e_stop="76217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTT-TGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTAT</genome_strand>
        <mrna_strand>GCAC-GAGGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTACTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTNTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAANTTTAAGTTAAAACCATGTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735004" ref_strand="+" ref_description="SGN-E735004 [LB14AF11]">
      <seq>acatagcttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattagcggttcctcctttgaaattttggcagttccattttgttttagaatgcagagaactatgtgaaattcctatcaattttaagttaaaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78918" stop="75926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78618" g_stop="78563" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="141" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="215" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="339" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="522" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76227" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="779" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="789"/>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E735004" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78618" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACC</genome_strand>
        <mrna_strand>ACATAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539466" ref_strand="+" ref_description="SGN-E539466 [TUS-59-D20]">
      <seq>ttttggctcccacacaaacatcagctctgtagttgcctctcactagcagtttctgttttgattggttagtgaacagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctanttgatgtgaaactacacattagcggttcctccttttgaattttgggcagtccattttgttttagaatgcagagaactatgtggaattcctatcaattttaagttaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78911" stop="75925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78611" g_stop="78563" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78007" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="161" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="235" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="359" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="542" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76229" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="797" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E539466" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78611" e_stop="78563"/>
          <exon e_start="78118" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAA</genome_strand>
        <mrna_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTANTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTTGAATTTTGGGCAGTCCATTTTGTTTTAGAATGCAGAGAACTATGTGGAATTCCTATCAATTTTAAGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304126" ref_strand="+" ref_description="SGN-E304126 [cLEX-6-N14]">
      <seq>cacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacacattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78376" stop="76015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78076" g_stop="78007" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="144" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="268" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="451" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76483" g_stop="76315" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="620" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E304126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78076" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAG</genome_strand>
        <mrna_strand>CACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285776" ref_strand="+" ref_description="SGN-E285776 [cLES-5-G14]">
      <seq>agacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgatgtgaaactacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78159" stop="76019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77859" g_stop="77836" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="148" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="331" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76483" g_stop="76319" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="496" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E285776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77859" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACA</genome_strand>
        <mrna_strand>AGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346065" ref_strand="+" ref_description="SGN-E346065 [cTOF-24-F2]">
      <seq>acacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgggtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctttttgatgtgaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78900" stop="76023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78600" g_stop="78563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="123" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="197" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="321" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="504" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76323" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="665" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E346065" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78600" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTA</genome_strand>
        <mrna_strand>ACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGGGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTTTTTGATGTGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373848" ref_strand="+" ref_description="SGN-E373848 [TUS-31-E20]">
      <seq>ttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaagcttaagttaatggtatgcatgtcctcgtctatttgatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78909" stop="76026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78609" g_stop="78563" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="132" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="206" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="330" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="513" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76326" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="671" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E373848" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78609" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAA</genome_strand>
        <mrna_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAAGCTTAAGTTAATGGTATGCATGTCCTCGTCTATTTGATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329120" ref_strand="+" ref_description="SGN-E329120 [cTOC-24-L16]">
      <seq>aggactcccgcaaacaaagcttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtctatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78928" stop="76032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78631" g_stop="78563" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="154" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="228" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="352" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="535" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76332" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="687" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E329120" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78631" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCCCGCAAACAAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGAT</genome_strand>
        <mrna_strand>AGGACTCCCGCAAACAAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307171" ref_strand="+" ref_description="SGN-E307171 [cLEY-15-I2]">
      <seq>ccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgtcctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78902" stop="76040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78602" g_stop="78563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="125" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="199" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="323" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="506" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76340" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="650" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E307171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78602" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTC</genome_strand>
        <mrna_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290440" ref_strand="+" ref_description="SGN-E290440 [cLES-20-D4]">
      <seq>ttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgagtaccccatcactgaggcttaagttaatgtaatgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78909" stop="76047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78609" g_stop="78563" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="132" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="206" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="330" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="513" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76347" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="650" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E290440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78609" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGT</genome_strand>
        <mrna_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294107" ref_strand="+" ref_description="SGN-E294107 [cLET-13-M14]">
      <seq>gctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgctgagattgttgggaagcgtactacgtatcgtgttgatggctccaagataatgaaggtggacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttctcagcagtttacagaaagctctcatgcaaagatgttgtgttggagtaccccatcactgaggcttaagttaatgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78906" stop="76052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78606" g_stop="78563" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="129" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="203" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="327" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="510" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76352" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="642" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E294107" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78606" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATG</genome_strand>
        <mrna_strand>GCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCTGAGATTGTTGGGAAGCGTACTACGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGGACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTCTCAGCAGTTTACAGAAAGCTCTCATGCAAAGATGTTGTGTTGGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322267" ref_strand="+" ref_description="SGN-E322267 [cTOB-24-A7]">
      <seq>ttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacacaccgagtataagttggagaccttttcagcagtttacagaaagctctcaggcaaagatgttgtgtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78911" stop="76085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78611" g_stop="78563" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="134" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="208" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="332" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="515" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76385" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="613" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E322267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78611" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAG</genome_strand>
        <mrna_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAAC-ACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297014" ref_strand="+" ref_description="SGN-E297014 [cLEW-6-H3]">
      <seq>ttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaaccggtataagttggagaccttttcagcagtttacagaaagctctcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78911" stop="76103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78611" g_stop="78563" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="134" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="208" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="332" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="515" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76403" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="596" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E297014" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78611" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGC</genome_strand>
        <mrna_strand>TTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACAACCGGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343008" ref_strand="+" ref_description="SGN-E343008 [cTOF-11-G3]">
      <seq>aaagcttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtaccacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactangtatcgtgttgatggctccaagatatgaaggtgtacttggaccccaaggaacgaaacacaccgagtataagttggagaccttttcagcagtttacagaaagctctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78916" stop="76105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78616" g_stop="78563" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="140" r_length="86" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="214" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="338" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="520" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="598" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E343008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78616" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTA-CACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAG</genome_strand>
        <mrna_strand>AAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACCACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTANGTATCGTGTTGATGGCTCCAAGAT-ATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAAC-ACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214345" ref_strand="+" ref_description="SGN-E214345 [cLEC-77-G11]">
      <seq>tgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactangtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78878" stop="76108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78578" g_stop="78563" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="101" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="299" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="482" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76408" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="558" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E214345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78578" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCT</genome_strand>
        <mrna_strand>TGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTANGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352843" ref_strand="+" ref_description="SGN-E352843 [cTOS-11-I2]">
      <seq>gaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaagggacgaaacaacaccgagtattagtttgagaccttttcagcagtttacagaaaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78194" stop="76108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77894" g_stop="77836" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="183" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="366" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76483" g_stop="76408" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="443" r_length="77" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E352843" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77894" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAG-AAAGCTCT</genome_strand>
        <mrna_strand>GAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGGACGAAACAACACCGAGTATTAGTTTGAGACCTTTTCAGCAGTTTACAGAAAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289057" ref_strand="+" ref_description="SGN-E289057 [cLES-18-G19]">
      <seq>tttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78910" stop="76114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78610" g_stop="78563" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="133" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="207" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="331" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="514" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76414" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="584" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E289057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78610" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAA</genome_strand>
        <mrna_strand>TTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304575" ref_strand="+" ref_description="SGN-E304575 [cLEX-11-J21]">
      <seq>ttgcctctcactagcagtttctgttttgattggttagtgaacagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaaggaacgaaacaacaccgagtataagttggagaccttttcagcagtttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78879" stop="76116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78579" g_stop="78563" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78007" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="129" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="203" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="327" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="510" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76416" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="578" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E304575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78579" e_stop="78563"/>
          <exon e_start="78118" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAG</genome_strand>
        <mrna_strand>TTGCCTCTCACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725525" ref_strand="+" ref_description="SGN-E725525 [LA03DF07]">
      <seq>gttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtgtacttggaccccaggaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78880" stop="76160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78580" g_stop="78563" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="103" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="177" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="301" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="484" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76483" g_stop="76460" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="507" r_length="23" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E725525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78580" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTTGGACCCCAAGGAACGA</genome_strand>
        <mrna_strand>GTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTTGGACCCC-AGGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354205" ref_strand="+" ref_description="SGN-E354205 [cTOS-16-O7]">
      <seq>gaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaagtatcgtgttgatggctccaagataatgaaggtgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78194" stop="76440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77894" g_stop="77836" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="183" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76924" g_stop="76742" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="366" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76483" g_stop="76476" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="374" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E354205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77894" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76742"/>
          <exon e_start="76483" e_stop="76476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTCATCTTTACCTCTAAACGCACAGCAAGCAAGCTCTATTATTGTTTTCCTGACTCGTTTCTTGTCACATATTTGGTATAGGTGTACTT</genome_strand>
        <mrna_strand>GAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAAGTATCGTGTTGATGGCTCCAAGATAATGAAG..................................................................................................................................................................................................................................................................GTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340327" ref_strand="+" ref_description="SGN-E340327 [cTOF-2-I12]">
      <seq>ccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggctccaagataatgaaggtaacactgtgaagcaccgtagttgtctgtatcttcctgatgaaatttttactgctgtaattaggtggagaagtctttagggtgaagtaatagtgctgcttgtacatttttcacatatgtcagaactaaaaacaactgtggttttctttggtatatcatttttaagtgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78902" stop="76270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78602" g_stop="78563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="125" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="199" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="323" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76562" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="686" r_length="363" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E340327" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78602" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTC</genome_strand>
        <mrna_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGGTATATCATTTTTAAGTGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297318" ref_strand="+" ref_description="SGN-E297318 [cLET-29-H16]">
      <seq>ggcaccctcacagatctgtcagccgtcgccgaacgctcagagatctgtgaagatgtacacatcaaagcaaaagattcacaaagacaaagatgctgaaccatctgagtttgaggtgtctgttggacaggctttgtttgatttggaaaacaccaaccaagagctgaaaagtgaattgaaggatctgtacatcaattcagcagttcaaattgatgtgtcaggaaataggaaagctgttgttattcacgttccttacagactgaggaaagctttccgcaaggtccatgtcaggcttgttagggagctcgagaagaaattcagtggaaaggatgtgatcttcattgccaccaggaggatagtgaggcccccaaagagaggctctgctgctcagcgaccccgcaccaggacccttacttctgtccatgatgccatgttggaggatttggttgtccctgcagagattgttgggaagcgaactagatatcgcgttgatggatccaagataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78395" stop="76446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="127" r_length="85" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="325" r_length="124" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76746" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="504" r_length="179" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E297318" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAAT</genome_strand>
        <mrna_strand>ATCTGTGAAGATGTACACATCAAAGCAAAAGATTCACAAAGACAAAGATGCTGAACCATCTGAGTTTGAGGTGTCTGTTGGACAG.................................................................................................GCTTTGTTTGATTTGGAAAACACCAACCAAGAGCTGAAAAGTGAATTGAAGGATCTGTACATCAATTCAGCAGT......................................................................................................TCAAATTGATGTGTCAGGAAATAGGAAAGCTGTTGTTATTCACGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTCCATGTCAGGCTTGTTAGGGAGCTCGAGAAGAAATTCAGTGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTCATTGCCACCAGGAGGATAGTGAGGCCCCCAAAGAGAGGCTCTGCTGCTCAGCGACCCCGCACCAGGACCCTTACTTCTGTCCATGATGCCATGTTGGAGGATTTGGTTGTCCCTGCAGAGATTGTTGGGAAGCGAACTAGATATCGCGTTGATGGATCCAAGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248612" ref_strand="+" ref_description="SGN-E248612 [cLEF-58-K9]">
      <seq>acaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78898" stop="76457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78598" g_stop="78563" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="121" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="195" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="319" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76757" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="487" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E248612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78598" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGC</genome_strand>
        <mrna_strand>ACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319462" ref_strand="+" ref_description="SGN-E319462 [cTOB-15-P14]">
      <seq>cttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtactaggtatcgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78912" stop="76459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78612" g_stop="78563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="135" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="209" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="333" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76759" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="499" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E319462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78612" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATG</genome_strand>
        <mrna_strand>CTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319605" ref_strand="+" ref_description="SGN-E319605 [cTOB-15-N22]">
      <seq>cttttggctcccacacaaacatcagctctgtagttgcctctgactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtggtccctgcggagattgttgggaagcgtactaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78912" stop="76470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78612" g_stop="78563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="135" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="209" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="333" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76770" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="488" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E319605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78612" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTA</genome_strand>
        <mrna_strand>CTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTGACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTGGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278714" ref_strand="+" ref_description="SGN-E278714 [cLER-2-G13]">
      <seq>ttggctcccacacaaacatcagctctgtagttgcctctcactagcagtttctgttttgattggttagtgaacagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagcnttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78909" stop="76475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78609" g_stop="78563" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78007" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="159" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="233" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="357" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76775" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="507" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E278714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78609" e_stop="78563"/>
          <exon e_start="78118" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACT</genome_strand>
        <mrna_strand>TTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCNTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290312" ref_strand="+" ref_description="SGN-E290312 [cLES-20-C21]">
      <seq>tttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78910" stop="76476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78610" g_stop="78563" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="133" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="207" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="331" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76776" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="480" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E290312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78610" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTAC</genome_strand>
        <mrna_strand>TTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310699" ref_strand="+" ref_description="SGN-E310699 [cLEZ-15-G19]">
      <seq>tcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctgtattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggagattgttgggaagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78904" stop="76477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78604" g_stop="78563" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="127" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="325" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76777" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="473" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E310699" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78604" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTA</genome_strand>
        <mrna_strand>TCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTGTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338861" ref_strand="+" ref_description="SGN-E338861 [cTOE-21-M3]">
      <seq>ccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattggaggacttggtagtccctgcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78902" stop="76493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78602" g_stop="78563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="125" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="199" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="323" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="455" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E338861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78602" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAG</genome_strand>
        <mrna_strand>CCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288699" ref_strand="+" ref_description="SGN-E288699 [cLES-8-I24]">
      <seq>ctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78885" stop="76515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78585" g_stop="78563" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="108" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="182" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="306" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76815" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="416" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E288699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78585" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGA</genome_strand>
        <mrna_strand>CTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274444" ref_strand="+" ref_description="SGN-E274444 [cLEN-19-M5]">
      <seq>tcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctcaacgaccccgcaccagaactcttacatctgttcatgatgccatattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78372" stop="76515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78072" g_stop="78007" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="140" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="264" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76924" g_stop="76815" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="374" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E274444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78072" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGA</genome_strand>
        <mrna_strand>TCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280238" ref_strand="-" ref_description="SGN-E280238 [cLEL-7-H18](-)">
      <seq>gcacgagcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaaagacctatacatcaattcagcaactcaaattgatgtgtcaggaaacaggaaggccgttgttatccatgttccttacagactgaggaaagctttccgcaaggttcatgttcgccttgttagggagttggagaagaaattcagtggcaaggatgtgatctttattgccaccaggaggatagtgagacctcccaagagaggttcagctgctaaacgaccccgcaccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78894" stop="76545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78597" g_stop="78563" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="120" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="194" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="318" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76924" g_stop="76845" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="398" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E280238" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78597" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77610"/>
          <exon e_start="76924" e_stop="76845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAGGTAGCTATTAATTTATTTCTGTAATTTTTGTCTTTACCATTGCCTTGTAGAATTTCTGAAGAATTGGGTGTAGATCATTTAATCTGAAATGATTACTACATTAGTTCATCCATGGTTATTGAAGCTTGTGGTGTTCTGTAACAGAATTATTCTTCACAGTTCCCATTATTATTTTAAGAATTGATTCCTTCACAATGCTGCACTTTTGGTTTCTACAATGTTTTCCTGAGTTGTAATTTGGCAAAATTGAGTTTACCTTTTGGTATTGGCATTTTGGAATTCACATACTTTGGTATTACCTTTTGAATTATATCTGTGGTGCTATTCTGAGAATAGCATCAGAATTTTCTAAATGGAGCCCAACCTTCCTAATCGTATTCAGTTGGTCATGTAATAATTGCAAAAATATTACATGCCTTGTTAATATATATTGTATATTATTTGCACTATTGTAGTCCCGAATTACCTATCCAAAGTTTTAATATGTAGCACTTAATAGAGCAAGTATTTGATTAGCTGGCCTCCCCTTTTTTAGGGAAACAATGAGGACAAATGTTATTCCCATTCTGAAGCTTTAAATGTGCCATGTATTTGCATTAATTTATTGGGGTAACTTTTCTTGTTTTGTTTTACAATGTAGTTGGGGGGGTTTCTTTGCCTTTGATGAAGTTTTTATTTTTTGTAGGATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAAC</genome_strand>
        <mrna_strand>GCACGAGCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC......................................................................................................TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTAAACGACCCCGCACCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310256" ref_strand="+" ref_description="SGN-E310256 [cTOA-1-M11]">
      <seq>aaagcttttggctcccacacaaacatcagctctgtagttgcctctcactagcagatctgtgaagatgtacacgtcgaagcaaaagattcacaaagataaagatgctgaaccttctgagtttgaagtgactgttgcgcaagctttctttgatttggaaaacactaacccagagctggaaagtgaattggaagacctatacatcaattcaacaactcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78916" stop="77536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78616" g_stop="78563" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78091" g_stop="78007" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="139" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="213" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77727" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="220" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E310256" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78616" e_stop="78563"/>
          <exon e_start="78091" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAATT</genome_strand>
        <mrna_strand>AAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAA.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCCAGAGCTGGAAAGTGAATTGGAAGACCTATACATCAATTCAACAAC......................................................................................................TCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282570" ref_strand="+" ref_description="SGN-E282570 [cLER-18-F18]">
      <seq>tgttttggctctctcacaaacatcagctttgtaggtgcctctcactagcagtttctgttttgattggttagtgaacagatctgtgaatatgtacacgtcgaagcaaaagattcacatagataaagatgctgaaccttctgtgtttgaagtgactgttgcgcaggctttctttgatttggaaaacactaaccaagagctgaaaagtgaattgaatgacctatacatcaattcaggaactcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0012O10-Q2S2h/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0012O10.1" temp_strand="-" temp_description="C06HBa0012O10.1  AC211022.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0012O10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78911" stop="77536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78613" g_stop="78563" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78007" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="163" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77909" g_stop="77836" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="237" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77733" g_stop="77728" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="243" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0012O10.1" gen_strand="-" ref_id="SGN-E282570" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0012O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78613" e_stop="78563"/>
          <exon e_start="78118" e_stop="78007"/>
          <exon e_start="77909" e_stop="77836"/>
          <exon e_start="77733" e_stop="77728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAGGTACTTTCTTCTCTTCAGGTTTTACGGCAAAATTAAATCTTTTTGTAGCAGTATTTCTCTTAGCTTTTAGAAGAAAATGATTAGTTCTATTTCTTTAGCTTTGTGTTGTTGATTTTTGTAAAAGCATGAAATAGATGAATTAAGGCAGAATTTTTGTTGATTTCGAAGAAAGATGGTGTTTTTCCTCGACCCCTTTTGAGATTATCGATTGGGTTTTATTTTTTTATAATGTAAAGACCATTGTGCTGATGTTAAATGTGGTTGAAATGATTAGAATGAGGATTTATATAGCTGAGCCAATATTGACGATTTAATGATGATATGCCGTTTTGTTGGTAGAACTAAGATTAAATATTTGCTTGAATATACAAAAAAATTGTAATTTTGCTTATTTGTACTGGCTCTTACTGATGCTATATAGTTTTTATTTGGGCTTTTCGTTAGTTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAGGTTATGTTTTGTCTTACTTGATGGCATTTGTTATTTAAAACCTGAATAGTTCATTGGATAGATGTTTGAAGAAAGGCATTAAATTGATTCTGAACAGGCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAACGTATGTGTGCTCTATTCTGTATTTAATGGCTTCGATTCTATATTGTAGGTAGTATGTATTTTGCACATTGTAGTAACTGCCTCTTTGACATGGATATTGCAGTCAAAT</genome_strand>
        <mrna_strand>TGTTTTGGCTCTCTCACAAACATCAGCTTTGTAGGTGCCTCTCACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAATATGTACACGTCGAAGCAAAAGATTCACATAGATAAAGATGCTGAACCTTCTGTGTTTGAAGTGACTGTTGCGCAG.................................................................................................GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAATGACCTATACATCAATTCAGGAAC......................................................................................................TCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>171</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1911" PGL_stop="2670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1911" e_stop="2205"/>
            <exon e_start="2291" e_stop="2670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1911" e_stop="2205" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2206" i_stop="2290" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="2291" e_stop="2670" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1911" stop="2205"/>
              <exon start="2291" stop="2670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1911" stop="2205"/>
              <exon start="2291" stop="2669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1954" stop="2205"/>
              <exon start="2291" stop="2670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1960" stop="2205"/>
              <exon start="2291" stop="2624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1976" stop="2205"/>
              <exon start="2291" stop="2435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCATGTTAATGTTGGTGACATTAGCAATGTGTACTATAGAAGACGATGTAAAAGATTGTGCAGATCAACTTGGAGATTTGGCATCATGTATACCATATGTTAGTGGCACAGCAAAAATGCCAACACCAGAATGTTGTGAAGATACTCAGAAATTAAAAGCTGCTAAGCCAAAATGTCTCTGTGTTCTCATTAAAGAGAGCACTGATCCATCTTTAGGCTTACCGATTAACACTACTCTGGCTCTTCAAATGCCAGCTGCTTGCAAAATTGATGCTAAAGTCTCTGATTGCCCAT : CATTACTGAAGATTCCAGCAGATTCACCAGATGCAAAGATTTTTAAAATAACTGATTCAGCTTCTACCACAACCGGTACCTCATCATCCCCTGCTTCTTCTACTTCAGAAACAAAGAGTACTACTTCAGATACAAAGAGTACTACTCCAACAAGCACCAATGGAGTTGCAAAGCAGATCAGCAACAACATTATACTGACTATGGCACTTACAGTAATTGCATTGATCTTTATTTAGAATAATTTGAGCAAGGCTGATTAATTATGGAAAGTGGAAACTAGCTAAGGATCATCACTACTGTTAGTTTGGTTTCTTAGTTTTAACTTGTTTCACTCTTAGGTCCAAATAAAATATCAATTTGCAATAATACTTGTTTGATTA</gDNA_template>
            <first_frame> C  M  L  M  L  V  T  L  A  M  C  T  I  E  D  D  V  K  D  C  A  D  Q  L  G  D  L  A  S  C  I  P  Y  V  S  G  T  A  K  M  P  T  P  E  C  C  E  D  T  Q  K  L  K  A  A  K  P  K  C  L  C  V  L  I  K  E  S  T  D  P  S  L  G  L  P  I  N  T  T  L  A  L  Q  M  P  A  A  C  K  I  D  A  K  V  S  D  C  P   : S  L  L  K  I  P  A  D  S  P  D  A  K  I  F  K  I  T  D  S  A  S  T  T  T  G  T  S  S  S  P  A  S  S  T  S  E  T  K  S  T  T  S  D  T  K  S  T  T  P  T  S  T  N  G  V  A  K  Q  I  S  N  N  I  I  L  T  M  A  L  T  V  I  A  L  I  F  I  *  N  N  L  S  K  A  D  *  L  W  K  V  E  T  S  *  G  S  S  L  L  L  V  W  F  L  S  F  N  L  F  H  S  *  V  Q  I  K  Y  Q  F  A  I  I  L  V  *  L </first_frame>
            <second_frame>  A  C  *  C  W  *  H  *  Q  C  V  L  *  K  T  M  *  K  I  V  Q  I  N  L  E  I  W  H  H  V  Y  H  M  L  V  A  Q  Q  K  C  Q  H  Q  N  V  V  K  I  L  R  N  *  K  L  L  S  Q  N  V  S  V  F  S  L  K  R  A  L  I  H  L  *  A  Y  R  L  T  L  L  W  L  F  K  C  Q  L  L  A  K  L  M  L  K  S  L  I  A  H  :  H  Y  *  R  F  Q  Q  I  H  Q  M  Q  R  F  L  K  *  L  I  Q  L  L  P  Q  P  V  P  H  H  P  L  L  L  L  L  Q  K  Q  R  V  L  L  Q  I  Q  R  V  L  L  Q  Q  A  P  M  E  L  Q  S  R  S  A  T  T  L  Y  *  L  W  H  L  Q  *  L  H  *  S  L  F  R  I  I  *  A  R  L  I  N  Y  G  K  W  K  L  A  K  D  H  H  Y  C  *  F  G  F  L  V  L  T  C  F  T  L  R  S  K  *  N  I  N  L  Q  *  Y  L  F  D   </second_frame>
            <third_frame>   H  V  N  V  G  D  I  S  N  V  Y  Y  R  R  R  C  K  R  L  C  R  S  T  W  R  F  G  I  M  Y  T  I  C  *  W  H  S  K  N  A  N  T  R  M  L  *  R  Y  S  E  I  K  S  C  *  A  K  M  S  L  C  S  H  *  R  E  H  *  S  I  F  R  L  T  D  *  H  Y  S  G  S  S  N  A  S  C  L  Q  N  *  C  *  S  L  *  L  P  I :   I  T  E  D  S  S  R  F  T  R  C  K  D  F  *  N  N  *  F  S  F  Y  H  N  R  Y  L  I  I  P  C  F  F  Y  F  R  N  K  E  Y  Y  F  R  Y  K  E  Y  Y  S  N  K  H  Q  W  S  C  K  A  D  Q  Q  Q  H  Y  T  D  Y  G  T  Y  S  N  C  I  D  L  Y  L  E  *  F  E  Q  G  *  L  I  M  E  S  G  N  *  L  R  I  I  T  T  V  S  L  V  S  *  F  *  L  V  S  L  L  G  P  N  K  I  S  I  C  N  N  T  C  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1911" stop="2205"/>
                    <exon start="2291" stop="2526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMLMLVTLAMCTIEDDVKDCADQLGDLASCIPYVSGTAKMPTPECCEDTQKLKAAKPKCLCVLIKESTDPSLGLPINTTLALQMPAACKIDAKVSDCPSLLKIPADSPDAKIFKITDSASTTTGTSSSPASSTSETKSTTSDTKSTTPTSTNGVAKQISNNIILTMALTVIALIFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12619" PGL_stop="14710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12619" e_stop="12771"/>
            <exon e_start="13861" e_stop="14001"/>
            <exon e_start="14101" e_stop="14258"/>
            <exon e_start="14348" e_stop="14458"/>
            <exon e_start="14673" e_stop="14710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.755" e_score="0.961"/>
          <exon-intron don_prob="0.079" acc_prob="0.901" e_score="0.965"/>
          <exon-intron don_prob="0.000" acc_prob="0.877" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="12619" e_stop="12771" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.755">
            <gDNA_intron_boundary i_start="12772" i_stop="13860" i_length="1089"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="13861" e_stop="14001" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.079" acc_prob="0.901">
            <gDNA_intron_boundary i_start="14002" i_stop="14100" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="14101" e_stop="14258" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="14259" i_stop="14347" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="14348" e_stop="14458" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14459" i_stop="14672" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14673" e_stop="14710" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12619" stop="12771"/>
              <exon start="13861" stop="14001"/>
              <exon start="14101" stop="14204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12620" stop="12771"/>
              <exon start="13861" stop="14001"/>
              <exon start="14101" stop="14258"/>
              <exon start="14348" stop="14458"/>
              <exon start="14673" stop="14710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCTTTAGAGAAAATTTGCTGAAAAAAAAAAGAAAAAAGGTTTCCATATTCATAGTTAATAATAATGAGGAATTATTAATTAATCATTGCTTTTGGTCTTCTCCTAGAGAACGTGCACATTTATGCCTTTCCATATCTATGCTTTTTACAG : ACGTTCTCTGAATTGAAGACCACACTCTAGTTACCATGATGGATTCAATCCTGGATCGTGTAGCTAAAGACTGTGGTAGACGGAATAGCTCAATTCCATCCACTAGCGGGGACATCTTTGAGCCTTCGTCAAGTAGTAATG : CTAAGCTACGGGCAACTTTGGTAGTGTGGATAAACGGTCTTCTTCCTTCCTTAAGTTTGCCAGTAAATGCTTCTGATGAGGAGTTACGAGCATACTTGGTTGATGGTACTATCTTGTGTCAATTGTTGAACAAGTTGAAGCCAGGTTTTATACCAGAG : TTTGGTGGTTCAGGCCTTTCTTCGTCGTTAGGCTCAGAAAATGTAAAACGGTTTTTGTCAGCTATGGATAAAATGGGCTTGCCTAGATTCCAAGCATCAGATTTAGAAAAG : GGATCCATGAAAATTGTTCTGGAGTGCCTTTTGACACT</gDNA_template>
            <first_frame> I  P  L  E  K  I  C  *  K  K  K  E  K  R  F  P  Y  S  *  L  I  I  M  R  N  Y  *  L  I  I  A  F  G  L  L  L  E  N  V  H  I  Y  A  F  P  Y  L  C  F  L  Q  :  T  F  S  E  L  K  T  T  L  *  L  P  *  W  I  Q  S  W  I  V  *  L  K  T  V  V  D  G  I  A  Q  F  H  P  L  A  G  T  S  L  S  L  R  Q  V  V  M  :  L  S  Y  G  Q  L  W  *  C  G  *  T  V  F  F  L  P  *  V  C  Q  *  M  L  L  M  R  S  Y  E  H  T  W  L  M  V  L  S  C  V  N  C  *  T  S  *  S  Q  V  L  Y  Q  S :   L  V  V  Q  A  F  L  R  R  *  A  Q  K  M  *  N  G  F  C  Q  L  W  I  K  W  A  C  L  D  S  K  H  Q  I  *  K  R :   D  P  *  K  L  F  W  S  A  F  *  H  </first_frame>
            <second_frame>  F  L  *  R  K  F  A  E  K  K  K  K  K  G  F  H  I  H  S  *  *  *  *  G  I  I  N  *  S  L  L  L  V  F  S  *  R  T  C  T  F  M  P  F  H  I  Y  A  F  Y  R :   R  S  L  N  *  R  P  H  S  S  Y  H  D  G  F  N  P  G  S  C  S  *  R  L  W  *  T  E  *  L  N  S  I  H  *  R  G  H  L  *  A  F  V  K  *  *  C :   *  A  T  G  N  F  G  S  V  D  K  R  S  S  S  F  L  K  F  A  S  K  C  F  *  *  G  V  T  S  I  L  G  *  W  Y  Y  L  V  S  I  V  E  Q  V  E  A  R  F  Y  T  R   : V  W  W  F  R  P  F  F  V  V  R  L  R  K  C  K  T  V  F  V  S  Y  G  *  N  G  L  A  *  I  P  S  I  R  F  R  K   : G  I  H  E  N  C  S  G  V  P  F  D  T </second_frame>
            <third_frame>   S  F  R  E  N  L  L  K  K  K  R  K  K  V  S  I  F  I  V  N  N  N  E  E  L  L  I  N  H  C  F  W  S  S  P  R  E  R  A  H  L  C  L  S  I  S  M  L  F  T   : D  V  L  *  I  E  D  H  T  L  V  T  M  M  D  S  I  L  D  R  V  A  K  D  C  G  R  R  N  S  S  I  P  S  T  S  G  D  I  F  E  P  S  S  S  S  N   : A  K  L  R  A  T  L  V  V  W  I  N  G  L  L  P  S  L  S  L  P  V  N  A  S  D  E  E  L  R  A  Y  L  V  D  G  T  I  L  C  Q  L  L  N  K  L  K  P  G  F  I  P  E  :  F  G  G  S  G  L  S  S  S  L  G  S  E  N  V  K  R  F  L  S  A  M  D  K  M  G  L  P  R  F  Q  A  S  D  L  E  K  :  G  S  M  K  I  V  L  E  C  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13872" stop="14001"/>
                    <exon start="14101" stop="14258"/>
                    <exon start="14348" stop="14458"/>
                    <exon start="14673" stop="14708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEDHTLVTMMDSILDRVAKDCGRRNSSIPSTSGDIFEPSSSSNAKLRATLVVWINGLLPSLSLPVNASDEELRAYLVDGTILCQLLNKLKPGFIPEFGGSGLSSSLGSENVKRFLSAMDKMGLPRFQASDLEKGSMKIVLECLLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26081" PGL_stop="24401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26081" e_stop="26002"/>
            <exon e_start="25829" e_stop="25612"/>
            <exon e_start="25517" e_stop="25451"/>
            <exon e_start="25149" e_stop="24401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26081" e_stop="26002" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="26001" i_stop="25830" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25612" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25611" i_stop="25518" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25517" e_stop="25451" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25450" i_stop="25150" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="25149" e_stop="24401" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26081" stop="26002"/>
              <exon start="25829" stop="25612"/>
              <exon start="25517" stop="25451"/>
              <exon start="25149" stop="24715"/>
            </gDNA_exon_coordinates>
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        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTTTTCTCTCCGCCTCACTCTCCCCACAAATCTCTCTCTCTCCCCTCCACAGGCATCCACTTGTTAGCCCACCAG : GCTTTGGATCTGTTGTGAACGTGAAAAAAGAAGATGAATATGTATGCTTATCAACAGAAGGCCTTGGTGGGTTGTGTTGGAGTTGGAGAAACAGGGAGAGCAGACATTTCTGTGTCTAACGGTGTCGTTTGTCCCAAGCCCCGTAAGCTTGGGTTCTTCGATTCTTACTCTGTTCATGTTGAAGAACCCATCAGACCTTATCAACTGATGCAATTTAT : AAATGAAGAAATGGAGGCTTGTGAGTTGAAAGCTGGAGCTGAGCTGCTGGATACCATCCTCACAAAG : GGGAGCTATGAAGTTGATAGAGCCAATTTTGAGGTCGATTCATCTCCACCGTTCTTTTATGGATCTCCACCCAGTAGGGCTGGGAATCCCCTGATCCAAGATGCCCAATTTGGCAACCACAATTTTGTTCCCATACTGCCAATCCCAGAAAGAGCAGTGGCACCCTCACCACCACCACCCTCCTCCTCCACCATCATGAGCGGAGGAGGCTGTGTTCGAGTGAAGTTTGGGAACAAGCAAGCTCCTGTGAGGATTGAAGGCTTCAATTGTCGCGGCAACTGCGGCATCTCAGCTGTAGCTTAGGTAAATCTACTGACACAGAGATGTTGGATGTTGAATAACCAACATCGTAAAGGATTTTAGATAAAAAGAAGAGATTTTTGGGGAAAGGCGCAAGAAACCTACACTAAATTCATTTAGCATTGTATATATAGAGTGACAGAAAGAGAGTTTAGTCCAATTTGCTGATGAGTTTTGTTCTCTAAATCATTCAAATCCAGTAATGTGTAAATTGTGAGAAAAGGGGGTGAATGAGTGTTTTATGTCCAAAAGAATAAAACTGTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACATGATATGAGTTGAAAGTACTTATTGTAGCATGAAGACTCAAAGAGGGAGGAGTTTCTTCCTTCATTGTAATATTAATCTGAATGGGAAAAGATGGTCTTCTTAGTTCTTACAAATTCA</gDNA_template>
            <first_frame> L  S  F  S  L  R  L  T  L  P  T  N  L  S  L  S  P  P  Q  A  S  T  C  *  P  T  R :   L  W  I  C  C  E  R  E  K  R  R  *  I  C  M  L  I  N  R  R  P  W  W  V  V  L  E  L  E  K  Q  G  E  Q  T  F  L  C  L  T  V  S  F  V  P  S  P  V  S  L  G  S  S  I  L  T  L  F  M  L  K  N  P  S  D  L  I  N  *  C  N  L   : *  M  K  K  W  R  L  V  S  *  K  L  E  L  S  C  W  I  P  S  S  Q  R :   G  A  M  K  L  I  E  P  I  L  R  S  I  H  L  H  R  S  F  M  D  L  H  P  V  G  L  G  I  P  *  S  K  M  P  N  L  A  T  T  I  L  F  P  Y  C  Q  S  Q  K  E  Q  W  H  P  H  H  H  H  P  P  P  P  P  S  *  A  E  E  A  V  F  E  *  S  L  G  T  S  K  L  L  *  G  L  K  A  S  I  V  A  A  T  A  A  S  Q  L  *  L  R  *  I  Y  *  H  R  D  V  G  C  *  I  T  N  I  V  K  D  F  R  *  K  E  E  I  F  G  E  R  R  K  K  P  T  L  N  S  F  S  I  V  Y  I  E  *  Q  K  E  S  L  V  Q  F  A  D  E  F  C  S  L  N  H  S  N  P  V  M  C  K  L  *  E  K  G  V  N  E  C  F  M  S  K  R  I  K  L  *  *  *  P  Q  R  K  R  *  D  F  G  S  D  *  V  S  F  I  A  F  R  T  *  Y  E  L  K  V  L  I  V  A  *  R  L  K  E  G  G  V  S  S  F  I  V  I  L  I  *  M  G  K  D  G  L  L  S  S  Y  K  F  </first_frame>
            <second_frame>  S  L  F  L  S  A  S  L  S  P  Q  I  S  L  S  P  L  H  R  H  P  L  V  S  P  P   : G  F  G  S  V  V  N  V  K  K  E  D  E  Y  V  C  L  S  T  E  G  L  G  G  L  C  W  S  W  R  N  R  E  S  R  H  F  C  V  *  R  C  R  L  S  Q  A  P  *  A  W  V  L  R  F  L  L  C  S  C  *  R  T  H  Q  T  L  S  T  D  A  I  Y  :  K  *  R  N  G  G  L  *  V  E  S  W  S  *  A  A  G  Y  H  P  H  K   : G  E  L  *  S  *  *  S  Q  F  *  G  R  F  I  S  T  V  L  L  W  I  S  T  Q  *  G  W  E  S  P  D  P  R  C  P  I  W  Q  P  Q  F  C  S  H  T  A  N  P  R  K  S  S  G  T  L  T  T  T  T  L  L  L  H  H  H  E  R  R  R  L  C  S  S  E  V  W  E  Q  A  S  S  C  E  D  *  R  L  Q  L  S  R  Q  L  R  H  L  S  C  S  L  G  K  S  T  D  T  E  M  L  D  V  E  *  P  T  S  *  R  I  L  D  K  K  K  R  F  L  G  K  G  A  R  N  L  H  *  I  H  L  A  L  Y  I  *  S  D  R  K  R  V  *  S  N  L  L  M  S  F  V  L  *  I  I  Q  I  Q  *  C  V  N  C  E  K  R  G  *  M  S  V  L  C  P  K  E  *  N  C  N  S  S  P  K  E  R  G  K  T  L  G  V  T  R  F  P  L  *  H  L  E  H  D  M  S  *  K  Y  L  L  *  H  E  D  S  K  R  E  E  F  L  P  S  L  *  Y  *  S  E  W  E  K  M  V  F  L  V  L  T  N  S </second_frame>
            <third_frame>   L  F  F  S  P  P  H  S  P  H  K  S  L  S  L  P  S  T  G  I  H  L  L  A  H  Q  :  A  L  D  L  L  *  T  *  K  K  K  M  N  M  Y  A  Y  Q  Q  K  A  L  V  G  C  V  G  V  G  E  T  G  R  A  D  I  S  V  S  N  G  V  V  C  P  K  P  R  K  L  G  F  F  D  S  Y  S  V  H  V  E  E  P  I  R  P  Y  Q  L  M  Q  F  I :   N  E  E  M  E  A  C  E  L  K  A  G  A  E  L  L  D  T  I  L  T  K  :  G  S  Y  E  V  D  R  A  N  F  E  V  D  S  S  P  P  F  F  Y  G  S  P  P  S  R  A  G  N  P  L  I  Q  D  A  Q  F  G  N  H  N  F  V  P  I  L  P  I  P  E  R  A  V  A  P  S  P  P  P  P  S  S  S  T  I  M  S  G  G  G  C  V  R  V  K  F  G  N  K  Q  A  P  V  R  I  E  G  F  N  C  R  G  N  C  G  I  S  A  V  A  *  V  N  L  L  T  Q  R  C  W  M  L  N  N  Q  H  R  K  G  F  *  I  K  R  R  D  F  W  G  K  A  Q  E  T  Y  T  K  F  I  *  H  C  I  Y  R  V  T  E  R  E  F  S  P  I  C  *  *  V  L  F  S  K  S  F  K  S  S  N  V  *  I  V  R  K  G  G  E  *  V  F  Y  V  Q  K  N  K  T  V  I  V  A  P  K  K  E  V  R  L  W  E  *  L  G  F  L  Y  S  I  *  N  M  I  *  V  E  S  T  Y  C  S  M  K  T  Q  R  G  R  S  F  F  L  H  C  N  I  N  L  N  G  K  R  W  S  S  *  F  L  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25805" stop="25612"/>
                    <exon start="25517" stop="25451"/>
                    <exon start="25149" stop="24847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKMNMYAYQQKALVGCVGVGETGRADISVSNGVVCPKPRKLGFFDSYSVHVEEPIRPYQLMQFINEEMEACELKAGAELLDTILTKGSYEVDRANFEVDSSPPFFYGSPPSRAGNPLIQDAQFGNHNFVPILPIPERAVAPSPPPPSSSTIMSGGGCVRVKFGNKQAPVRIEGFNCRGNCGISAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41046" PGL_stop="41956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41046" e_stop="41956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="41046" e_stop="41956" e_length="911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41046" stop="41620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41048" stop="41952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41048" stop="41311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41084" stop="41796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41084" stop="41402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41300" stop="41956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41315" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41354" stop="41862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGGTTTATCTTCATGGAAGAGTATATACTTAAAAAAAACGGTAACAAGCGAACCCGAGAGGATTCGGGTTTGGACTCGGTCTTCGACTCGCATGAGTCGAAGCGAGTCCATATTGAGGCAAATGCAGGTTCGAGCTCGGTTGAGTTGAACGGAGTTGAAATGGAATTAGAGGTGAACTCGTCCGAGTCAAATCAGGAAGGTCATGTCTGTTCGCCGGAGTTTGATGAGTATGATGCAGACGTAGACGTAGATTCGCCGGAGGCTAAGCAGATTAGAGAAGATATTCTGGATATACTTGATGAGCCAGAAACAGTGAGAGATGGTACTATACCAGAAAATCAGGACCTTGACTCTGTAATCAAGAGTTTTGAAGAAGAGATCCTTCATCCTTCAACTCAGCCATCTCCTCAGACCTTCATTGACCTAACGTTCTCAGATTCCGGCCGTACTCAATCGGACCTCGGCTACCTCCTAGAAGCTTCGGACGATGAGCTTGGCCTCCCGCCCAGCTTTTCTCCCGAAAGAAATGTTGACTCCGAATCGAGATTGGGAAATACGATTGGATTTGAAAACGAATTGTTAAGACATGACTCATTCGACTTTGGGATGCTTGCCGGGATCATGGACGGAGATAATTACGGCAGTGAAAATGGCGGTGATTTTGTCACAGTGGGCGGACTATTCGATTATCCAGATCCATCAAATTTTTCGGAGTTGTCACGGCTGCCGGAGTCCCTACCGGCTTTGTAGAGAAAAGTGTGTTTTTAGGCGGCGTGTCTCACCTGTCCGGTCGAAATCTAATAGCTTTAGAATATTAGTTTGCTGTTTGTACATTTTAAAAAGATTAATAGCGAGGCTGAATATCAATATAAGTTTGCTTTTTTTTTTTTTCTTATACAAAGTCATTA</gDNA_template>
            <first_frame> T  W  F  I  F  M  E  E  Y  I  L  K  K  N  G  N  K  R  T  R  E  D  S  G  L  D  S  V  F  D  S  H  E  S  K  R  V  H  I  E  A  N  A  G  S  S  S  V  E  L  N  G  V  E  M  E  L  E  V  N  S  S  E  S  N  Q  E  G  H  V  C  S  P  E  F  D  E  Y  D  A  D  V  D  V  D  S  P  E  A  K  Q  I  R  E  D  I  L  D  I  L  D  E  P  E  T  V  R  D  G  T  I  P  E  N  Q  D  L  D  S  V  I  K  S  F  E  E  E  I  L  H  P  S  T  Q  P  S  P  Q  T  F  I  D  L  T  F  S  D  S  G  R  T  Q  S  D  L  G  Y  L  L  E  A  S  D  D  E  L  G  L  P  P  S  F  S  P  E  R  N  V  D  S  E  S  R  L  G  N  T  I  G  F  E  N  E  L  L  R  H  D  S  F  D  F  G  M  L  A  G  I  M  D  G  D  N  Y  G  S  E  N  G  G  D  F  V  T  V  G  G  L  F  D  Y  P  D  P  S  N  F  S  E  L  S  R  L  P  E  S  L  P  A  L  *  R  K  V  C  F  *  A  A  C  L  T  C  P  V  E  I  *  *  L  *  N  I  S  L  L  F  V  H  F  K  K  I  N  S  E  A  E  Y  Q  Y  K  F  A  F  F  F  F  L  I  Q  S  H   </first_frame>
            <second_frame>  L  G  L  S  S  W  K  S  I  Y  L  K  K  T  V  T  S  E  P  E  R  I  R  V  W  T  R  S  S  T  R  M  S  R  S  E  S  I  L  R  Q  M  Q  V  R  A  R  L  S  *  T  E  L  K  W  N  *  R  *  T  R  P  S  Q  I  R  K  V  M  S  V  R  R  S  L  M  S  M  M  Q  T  *  T  *  I  R  R  R  L  S  R  L  E  K  I  F  W  I  Y  L  M  S  Q  K  Q  *  E  M  V  L  Y  Q  K  I  R  T  L  T  L  *  S  R  V  L  K  K  R  S  F  I  L  Q  L  S  H  L  L  R  P  S  L  T  *  R  S  Q  I  P  A  V  L  N  R  T  S  A  T  S  *  K  L  R  T  M  S  L  A  S  R  P  A  F  L  P  K  E  M  L  T  P  N  R  D  W  E  I  R  L  D  L  K  T  N  C  *  D  M  T  H  S  T  L  G  C  L  P  G  S  W  T  E  I  I  T  A  V  K  M  A  V  I  L  S  Q  W  A  D  Y  S  I  I  Q  I  H  Q  I  F  R  S  C  H  G  C  R  S  P  Y  R  L  C  R  E  K  C  V  F  R  R  R  V  S  P  V  R  S  K  S  N  S  F  R  I  L  V  C  C  L  Y  I  L  K  R  L  I  A  R  L  N  I  N  I  S  L  L  F  F  F  F  L  Y  K  V  I  </second_frame>
            <third_frame>   L  V  Y  L  H  G  R  V  Y  T  *  K  K  R  *  Q  A  N  P  R  G  F  G  F  G  L  G  L  R  L  A  *  V  E  A  S  P  Y  *  G  K  C  R  F  E  L  G  *  V  E  R  S  *  N  G  I  R  G  E  L  V  R  V  K  S  G  R  S  C  L  F  A  G  V  *  *  V  *  C  R  R  R  R  R  F  A  G  G  *  A  D  *  R  R  Y  S  G  Y  T  *  *  A  R  N  S  E  R  W  Y  Y  T  R  K  S  G  P  *  L  C  N  Q  E  F  *  R  R  D  P  S  S  F  N  S  A  I  S  S  D  L  H  *  P  N  V  L  R  F  R  P  Y  S  I  G  P  R  L  P  P  R  S  F  G  R  *  A  W  P  P  A  Q  L  F  S  R  K  K  C  *  L  R  I  E  I  G  K  Y  D  W  I  *  K  R  I  V  K  T  *  L  I  R  L  W  D  A  C  R  D  H  G  R  R  *  L  R  Q  *  K  W  R  *  F  C  H  S  G  R  T  I  R  L  S  R  S  I  K  F  F  G  V  V  T  A  A  G  V  P  T  G  F  V  E  K  S  V  F  L  G  G  V  S  H  L  S  G  R  N  L  I  A  L  E  Y  *  F  A  V  C  T  F  *  K  D  *  *  R  G  *  I  S  I  *  V  C  F  F  F  F  S  Y  T  K  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41046" stop="41798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWFIFMEEYILKKNGNKRTREDSGLDSVFDSHESKRVHIEANAGSSSVELNGVEMELEVNSSESNQEGHVCSPEFDEYDADVDVDSPEAKQIREDILDILDEPETVRDGTIPENQDLDSVIKSFEEEILHPSTQPSPQTFIDLTFSDSGRTQSDLGYLLEASDDELGLPPSFSPERNVDSESRLGNTIGFENELLRHDSFDFGMLAGIMDGDNYGSENGGDFVTVGGLFDYPDPSNFSELSRLPESLPAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="56365" PGL_stop="58313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56365" e_stop="56760"/>
            <exon e_start="57818" e_stop="58283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56365" e_stop="56760" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57818" e_stop="58283" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="56760"/>
              <exon start="57818" stop="58194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56369" stop="56760"/>
              <exon start="57818" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56372" stop="56760"/>
              <exon start="57818" stop="58253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56372" stop="56760"/>
              <exon start="57818" stop="58210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56373" stop="56760"/>
              <exon start="57818" stop="58019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56760"/>
              <exon start="57818" stop="58048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56760"/>
              <exon start="57818" stop="57989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56377" stop="56760"/>
              <exon start="57818" stop="58118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56378" stop="56760"/>
              <exon start="57818" stop="58271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="57967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56381" stop="56760"/>
              <exon start="57818" stop="58165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56384" stop="56760"/>
              <exon start="57818" stop="58200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56386" stop="56760"/>
              <exon start="57818" stop="58125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="58180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="58131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="57914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56417" stop="56760"/>
              <exon start="57818" stop="57908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56418" stop="56760"/>
              <exon start="57818" stop="58036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56459" stop="56760"/>
              <exon start="57818" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56500" stop="56760"/>
              <exon start="57818" stop="58198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56560" stop="56760"/>
              <exon start="57818" stop="58156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250438" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58023" stop="58283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCACAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG : CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAATGTTCACAGAGTGATTCTCTTGCAATTCTTGTTCCATGTTATACAATATTGTGTTAGTTTTAAGACTCTTGTCGC</gDNA_template>
            <first_frame> A  T  T  M  A  L  T  G  N  R  I  L  C  N  S  S  S  T  K  I  P  F  T  Q  F  P  L  R  R  P  F  L  L  P  S  Q  G  R  R  S  Q  F  T  A  F  A  A  K  K  F  T  S  G  K  N  K  R  S  S  I  S  T  K  E  P  V  K  E  E  E  E  E  F  Q  T  I  N  I  R  I  D  S  Q  D  R  V  S  A  T  T  T  T  G  D  A  F  V  M  P  K  L  P  G  E  E  T  D  F  W  E  G  P  Q  W  D  G  F  G  F  F  V  Q  Y  M  W  A  F  G  V  L  F  S  :  L  I  A  C  G  I  A  V  A  T  Y  N  D  G  A  T  D  F  K  A  T  P  V  Y  K  E  A  M  E  S  Q  E  L  L  E  E  P  E  A  S  N  S  D  V  F  E  S  N  P  T  E  E  A  P  S  L  E  *  I  S  L  L  S  A  L  L  M  K  N  S  V  F  I  L  S  *  L  R  V  K  Q  K  S  S  *  E  C  P  T  *  I  R  S  K  L  K  C  R  H  F  Y  T  L  Y  P  C  G  I  V  V  Q  N  I  L  I  K  V  W  K  L  I  L  Y  F  Q  L  Q  V  T  R  M  F  T  E  *  F  S  C  N  S  C  S  M  L  Y  N  I  V  L  V  L  R  L  L  S  </first_frame>
            <second_frame>  P  Q  Q  W  L  S  Q  E  I  E  F  S  A  T  A  H  Q  Q  K  Y  R  L  P  N  S  L  F  V  V  P  S  Y  F  P  L  R  G  E  E  V  N  S  L  H  S  L  Q  R  S  S  R  Q  G  R  T  R  E  V  Q  F  Q  L  K  S  Q  *  K  K  K  K  K  N  S  R  R  S  I  F  V  L  I  V  K  I  G  F  L  Q  P  Q  Q  L  V  M  L  L  *  C  R  S  F  L  E  R  K  L  I  S  G  K  D  L  N  G  M  D  L  D  S  L  F  S  I  C  G  L  L  A  F  S  F  R :   *  L  H  V  V  L  L  W  P  H  I  T  M  E  L  Q  I  S  R  L  L  L  C  I  R  K  Q  W  N  H  K  N  F  L  K  N  Q  R  L  L  T  Q  M  C  L  S  Q  I  Q  L  K  K  H  L  V  W  N  R  *  V  C  *  V  H  F  *  *  R  I  L  S  S  Y  C  H  N  Y  G  *  N  R  S  P  A  K  S  A  Q  L  R  F  E  A  S  *  N  V  D  I  F  I  L  C  I  H  V  E  L  *  C  K  I  Y  *  *  K  Y  G  S  *  S  F  I  F  N  Y  K  S  Q  E  C  S  Q  S  D  S  L  A  I  L  V  P  C  Y  T  I  L  C  *  F  *  D  S  C  R </second_frame>
            <third_frame>   H  N  N  G  S  H  R  K  S  N  S  L  Q  Q  L  I  N  K  N  T  V  Y  P  I  P  S  S  S  S  L  L  T  S  L  S  G  E  K  K  S  I  H  C  I  R  C  K  E  V  H  V  R  E  E  Q  E  K  F  N  F  N  *  R  A  S  K  R  R  R  R  R  I  P  D  D  Q  Y  S  Y  *  *  S  R  *  G  F  C  N  H  N  N  W  *  C  F  C  D  A  E  A  S  W  R  G  N  *  F  L  G  R  T  S  M  G  W  I  W  I  L  C  S  V  Y  V  G  F  W  R  S  L  F   : A  D  C  M  W  Y  C  C  G  H  I  *  R  W  S  Y  R  F  Q  G  Y  S  C  V  *  G  S  N  G  I  T  R  T  S  *  R  T  R  G  F  *  L  R  C  V  *  V  K  S  N  *  R  S  T  *  F  G  I  D  K  F  A  K  C  T  S  N  E  E  F  C  L  H  I  V  I  I  T  G  K  T  E  V  Q  L  R  V  P  N  L  D  S  K  Q  A  E  M  *  T  F  L  Y  F  V  S  M  W  N  C  S  A  K  Y  T  D  K  S  M  E  V  D  P  L  F  S  T  T  S  H  K  N  V  H  R  V  I  L  L  Q  F  L  F  H  V  I  Q  Y  C  V  S  F  K  T  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56365" stop="56760"/>
                    <exon start="57818" stop="57991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATTMALTGNRILCNSSSTKIPFTQFPLRRPFLLPSQGRRSQFTAFAAKKFTSGKNKRSSISTKEPVKEEEEEFQTINIRIDSQDRVSATTTTGDAFVMPKLPGEETDFWEGPQWDGFGFFVQYMWAFGVLFSLIACGIAVATYNDGATDFKATPVYKEAMESQELLEEPEASNSDVFESNPTEEAPSLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56365" e_stop="56760"/>
            <exon e_start="57818" e_stop="58209"/>
            <exon e_start="58308" e_stop="58313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.861" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56365" e_stop="56760" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56761" i_stop="57817" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57818" e_stop="58209" e_length="392"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.861">
            <gDNA_intron_boundary i_start="58210" i_stop="58307" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.833">
            <gDNA_exon_boundary e_start="58308" e_stop="58313" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="56760"/>
              <exon start="57818" stop="58194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56369" stop="56760"/>
              <exon start="57818" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56373" stop="56760"/>
              <exon start="57818" stop="58019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56760"/>
              <exon start="57818" stop="58048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56760"/>
              <exon start="57818" stop="57989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56377" stop="56760"/>
              <exon start="57818" stop="58118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="58038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
              <exon start="57818" stop="57967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56381" stop="56760"/>
              <exon start="57818" stop="58165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56384" stop="56760"/>
              <exon start="57818" stop="58200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56386" stop="56760"/>
              <exon start="57818" stop="58125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="58180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="58131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56760"/>
              <exon start="57818" stop="57914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56417" stop="56760"/>
              <exon start="57818" stop="57908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56418" stop="56760"/>
              <exon start="57818" stop="58036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56459" stop="56760"/>
              <exon start="57818" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56500" stop="56760"/>
              <exon start="57818" stop="58198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56560" stop="56760"/>
              <exon start="57818" stop="58156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250438" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56725" stop="56760"/>
              <exon start="57818" stop="58209"/>
              <exon start="58308" stop="58313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294684" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCACAACAATGGCTCTCACAGGAAATCGAATTCTCTGCAACAGCTCATCAACAAAAATACCGTTTACCCAATTCCCTCTTCGTCGTCCCTTCTTACTTCCCTCTCAGGGGAGAAGAAGTCAATTCACTGCATTCGCTGCAAAGAAGTTCACGTCAGGGAAGAACAAGAGAAGTTCAATTTCAACTAAAGAGCCAGTAAAAGAAGAAGAAGAAGAATTCCAGACGATCAATATTCGTATTGATAGTCAAGATAGGGTTTCTGCAACCACAACAACTGGTGATGCTTTTGTGATGCCGAAGCTTCCTGGAGAGGAAACTGATTTCTGGGAAGGACCTCAATGGGATGGATTTGGATTCTTTGTTCAGTATATGTGGGCTTTTGGCGTTCTCTTTTCG : CTGATTGCATGTGGTATTGCTGTGGCCACATATAACGATGGAGCTACAGATTTCAAGGCTACTCCTGTGTATAAGGAAGCAATGGAATCACAAGAACTTCTTGAAGAACCAGAGGCTTCTAACTCAGATGTGTTTGAGTCAAATCCAACTGAAGAAGCACCTAGTTTGGAATAGATAAGTTTGCTAAGTGCACTTCTAATGAAGAATTCTGTCTTCATATTGTCATAATTACGGGTAAAACAGAAGTCCAGCTAAGAGTGCCCAACTTAGATTCGAAGCAAGCTGAAATGTAGACATTTTTATACTTTGTATCCATGTGGAATTGTAGTGCAAAATATACTGATAAAAGTATGGAAGTTGATCCTTTATTTTCAACTACAAGTCACAAGAAT : AAAATA</gDNA_template>
            <first_frame> A  T  T  M  A  L  T  G  N  R  I  L  C  N  S  S  S  T  K  I  P  F  T  Q  F  P  L  R  R  P  F  L  L  P  S  Q  G  R  R  S  Q  F  T  A  F  A  A  K  K  F  T  S  G  K  N  K  R  S  S  I  S  T  K  E  P  V  K  E  E  E  E  E  F  Q  T  I  N  I  R  I  D  S  Q  D  R  V  S  A  T  T  T  T  G  D  A  F  V  M  P  K  L  P  G  E  E  T  D  F  W  E  G  P  Q  W  D  G  F  G  F  F  V  Q  Y  M  W  A  F  G  V  L  F  S  :  L  I  A  C  G  I  A  V  A  T  Y  N  D  G  A  T  D  F  K  A  T  P  V  Y  K  E  A  M  E  S  Q  E  L  L  E  E  P  E  A  S  N  S  D  V  F  E  S  N  P  T  E  E  A  P  S  L  E  *  I  S  L  L  S  A  L  L  M  K  N  S  V  F  I  L  S  *  L  R  V  K  Q  K  S  S  *  E  C  P  T  *  I  R  S  K  L  K  C  R  H  F  Y  T  L  Y  P  C  G  I  V  V  Q  N  I  L  I  K  V  W  K  L  I  L  Y  F  Q  L  Q  V  T  R  I :   K   </first_frame>
            <second_frame>  P  Q  Q  W  L  S  Q  E  I  E  F  S  A  T  A  H  Q  Q  K  Y  R  L  P  N  S  L  F  V  V  P  S  Y  F  P  L  R  G  E  E  V  N  S  L  H  S  L  Q  R  S  S  R  Q  G  R  T  R  E  V  Q  F  Q  L  K  S  Q  *  K  K  K  K  K  N  S  R  R  S  I  F  V  L  I  V  K  I  G  F  L  Q  P  Q  Q  L  V  M  L  L  *  C  R  S  F  L  E  R  K  L  I  S  G  K  D  L  N  G  M  D  L  D  S  L  F  S  I  C  G  L  L  A  F  S  F  R :   *  L  H  V  V  L  L  W  P  H  I  T  M  E  L  Q  I  S  R  L  L  L  C  I  R  K  Q  W  N  H  K  N  F  L  K  N  Q  R  L  L  T  Q  M  C  L  S  Q  I  Q  L  K  K  H  L  V  W  N  R  *  V  C  *  V  H  F  *  *  R  I  L  S  S  Y  C  H  N  Y  G  *  N  R  S  P  A  K  S  A  Q  L  R  F  E  A  S  *  N  V  D  I  F  I  L  C  I  H  V  E  L  *  C  K  I  Y  *  *  K  Y  G  S  *  S  F  I  F  N  Y  K  S  Q  E   : *  N  </second_frame>
            <third_frame>   H  N  N  G  S  H  R  K  S  N  S  L  Q  Q  L  I  N  K  N  T  V  Y  P  I  P  S  S  S  S  L  L  T  S  L  S  G  E  K  K  S  I  H  C  I  R  C  K  E  V  H  V  R  E  E  Q  E  K  F  N  F  N  *  R  A  S  K  R  R  R  R  R  I  P  D  D  Q  Y  S  Y  *  *  S  R  *  G  F  C  N  H  N  N  W  *  C  F  C  D  A  E  A  S  W  R  G  N  *  F  L  G  R  T  S  M  G  W  I  W  I  L  C  S  V  Y  V  G  F  W  R  S  L  F   : A  D  C  M  W  Y  C  C  G  H  I  *  R  W  S  Y  R  F  Q  G  Y  S  C  V  *  G  S  N  G  I  T  R  T  S  *  R  T  R  G  F  *  L  R  C  V  *  V  K  S  N  *  R  S  T  *  F  G  I  D  K  F  A  K  C  T  S  N  E  E  F  C  L  H  I  V  I  I  T  G  K  T  E  V  Q  L  R  V  P  N  L  D  S  K  Q  A  E  M  *  T  F  L  Y  F  V  S  M  W  N  C  S  A  K  Y  T  D  K  S  M  E  V  D  P  L  F  S  T  T  S  H  K  N  :  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56365" stop="56760"/>
                    <exon start="57818" stop="57991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATTMALTGNRILCNSSSTKIPFTQFPLRRPFLLPSQGRRSQFTAFAAKKFTSGKNKRSSISTKEPVKEEEEEFQTINIRIDSQDRVSATTTTGDAFVMPKLPGEETDFWEGPQWDGFGFFVQYMWAFGVLFSLIACGIAVATYNDGATDFKATPVYKEAMESQELLEEPEASNSDVFESNPTEEAPSLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="60536" PGL_stop="68471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60536" e_stop="60654"/>
            <exon e_start="61339" e_stop="61754"/>
            <exon e_start="63117" e_stop="63363"/>
            <exon e_start="64319" e_stop="64431"/>
            <exon e_start="64996" e_stop="65075"/>
            <exon e_start="65353" e_stop="65494"/>
            <exon e_start="65665" e_stop="65745"/>
            <exon e_start="66188" e_stop="66292"/>
            <exon e_start="66440" e_stop="66622"/>
            <exon e_start="66963" e_stop="67055"/>
            <exon e_start="67400" e_stop="67539"/>
            <exon e_start="67618" e_stop="67684"/>
            <exon e_start="68433" e_stop="68471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="0.992"/>
          <exon-intron don_prob="0.983" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60536" e_stop="60654" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.916">
            <gDNA_intron_boundary i_start="60655" i_stop="61338" i_length="684"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61339" e_stop="61754" e_length="416"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.848">
            <gDNA_intron_boundary i_start="61755" i_stop="63116" i_length="1362"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="63117" e_stop="63363" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.866">
            <gDNA_intron_boundary i_start="63364" i_stop="64318" i_length="955"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64319" e_stop="64431" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64432" i_stop="64995" i_length="564"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64996" e_stop="65075" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.886">
            <gDNA_intron_boundary i_start="65076" i_stop="65352" i_length="277"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65353" e_stop="65494" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.812">
            <gDNA_intron_boundary i_start="65495" i_stop="65664" i_length="170"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65665" e_stop="65745" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.988">
            <gDNA_intron_boundary i_start="65746" i_stop="66187" i_length="442"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66188" e_stop="66292" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66293" i_stop="66439" i_length="147"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66440" e_stop="66622" e_length="183"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66623" i_stop="66962" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66963" e_stop="67055" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.971" acc_prob="0.985">
            <gDNA_intron_boundary i_start="67056" i_stop="67399" i_length="344"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67400" e_stop="67539" e_length="140"/>
          </exon>
          <intron i_serial="11" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67540" i_stop="67617" i_length="78"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67618" e_stop="67684" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="0.910" acc_prob="0.925">
            <gDNA_intron_boundary i_start="67685" i_stop="68432" i_length="748"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68433" e_stop="68471" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60536" stop="60654"/>
              <exon start="61339" stop="61713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60536" stop="60654"/>
              <exon start="61339" stop="61514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281333" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60557" stop="60654"/>
              <exon start="61339" stop="61754"/>
              <exon start="63117" stop="63255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63119" stop="63363"/>
              <exon start="64319" stop="64431"/>
              <exon start="64996" stop="65075"/>
              <exon start="65353" stop="65494"/>
              <exon start="65665" stop="65745"/>
              <exon start="66188" stop="66292"/>
              <exon start="66440" stop="66476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65443" stop="65494"/>
              <exon start="65665" stop="65745"/>
              <exon start="66188" stop="66292"/>
              <exon start="66440" stop="66622"/>
              <exon start="66963" stop="67055"/>
              <exon start="67400" stop="67539"/>
              <exon start="67618" stop="67684"/>
              <exon start="68433" stop="68471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65726" stop="65745"/>
              <exon start="66188" stop="66292"/>
              <exon start="66440" stop="66622"/>
              <exon start="66963" stop="67055"/>
              <exon start="67400" stop="67539"/>
              <exon start="67618" stop="67642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66622"/>
              <exon start="66963" stop="67055"/>
              <exon start="67400" stop="67539"/>
              <exon start="67618" stop="67684"/>
              <exon start="68433" stop="68471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGAAAGAAGAAGAAGCCAAAAGCACCGGAAATAGCAGATCCTTCTCATCTTCTCCGGCAATAGATCAGTCTTCCGATAAATTTCTGCTGCTCTCATTCCATCCATTGCTTCTCAG : ATATTTGAGCATTGCGAGAAACCATGTCCGCTATTGATGAGCCGTTATATCCTATTGCGGTTTTGATTGATGAGTTGAAGAATGAAGACATCCAGCTTAGATTGAATTCAATCCGGCGATTGTCTACCATCGCCCGTGCTCTTGGTGAGGAGAGAACACGGAAAGAGTTGATTCCATTTCTAAGTGAGAACAACGATGATGATGACGAAGTTCTTCTTGCAATGGCTGAAGAGTTGGGCATGTTTATTCCATATGTTGGAGGGGTTGAACATGCGCGTGTATTGCTTCCACCCTTAGAAGGACTTTGTAGTGTTGAGGAGACTTGTGTTAGGGAAAAGGCAGTTGAGTCATTATGCAAAATTGGGTCCCAAATGAAGGAATCGGATTTGGTGGAATCATTTATTCCACTTGTGAAG : AGACTGGCTACTGGAGAGTGGTTCACTGCTCGAGTTTCCTCCTGTGGATTGTTTCACATTGCTTATCCTAGTGCTCCAGAGCCACTAAAGAATGAACTGAGAACCATATATAGCCAACTTTGTCAAGATGATATGCCTATGGTGAGGAGAGCAGCTGCCACAAATCTTGGAAAGTTTGCTGCAACTATTGAACAACCCCATCTGAAGACCGACATCATGTCAATGTTTGAGACCCTGACACAGGATG : ATCAAGATTCTGTCCGTTTATTGGCTGTCGAGGATTGTGCTGCTTTGGGGAAGCTGCTGGAGCCTAAAGACTGTGTAGCACAAATTCTTTCCGTCATAGTTAATTTTGCGCAG : GATAAGTCTTGGCGTGTTCGTTACATGGTTGCAAATCAACTCTATGATCTTTGTGAGGCAGTTGGACCAGAGGCTACCAG : GACGGATTTGGTCCCTGCCTATGTTCGGCTACTTCGTGATAATGAGGCTGAAGTGCGTATAGCTGCTGCTGGCAAGGTGACTAAGTTTTGCCGTATTTTGAGCCCTGAACTTGCTATCCAGCATATCCTTCCTTGTGTAAAG : GAACTATCATCAGATTCATCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATCATGGGAATGGCACCTATTTTAGGAAAG : GATGCAACTATTGAGCAGCTTCTCCCGATTTTCCTCTCTCTTCTGAAGGATGAGTTTCCTGATGTTCGTTTGAATATTATCAGTAAGCTTGATCAAGTAAACCAG : GTAATTGGAATTGATTTGCTCTCCCAATCACTGCTGCCAGCAATTGTTGAACTTGCAGAAGATAGACACTGGAGGGTTCGGCTTGCAATAATTGAGTACATACCTCTATTGGCAAGTCAGCTGGGTGTTGGCTTTTTTGATGACAAGCTTGGTGCTCTGTGCATGCAATGGCTAAAAGATAAG : GTTTACTCTATTAGAGATGCAGCAGCAAACAATGTAAAGCGCCTTGCTGAGGAATTTGGTCCAAAATGGGCAATGGAGCATATAATTCCACAG : GTGCTGGATATGATTAATGACCCACATTATCTTTACCGGATGACCATCCTTCATGCAATTTCTCTTCTTGCCCCTGTCTTGGGCTCAGAAATTGCTTGCTCCAAACTCCTGCCGGTTATAATTACTGCATCAAAAGACAG : GGTACCGAATATCAAGTTCAATGTGGCTAAGGTGTTGCAGTCTGTTATTCCAATAGTTGAACAATCT : GTTGTGGAGAGCACAATTCGACCGTGTTTGGTTGAACTC</gDNA_template>
            <first_frame> K  R  K  E  E  E  A  K  S  T  G  N  S  R  S  F  S  S  S  P  A  I  D  Q  S  S  D  K  F  L  L  L  S  F  H  P  L  L  L  R :   Y  L  S  I  A  R  N  H  V  R  Y  *  *  A  V  I  S  Y  C  G  F  D  *  *  V  E  E  *  R  H  P  A  *  I  E  F  N  P  A  I  V  Y  H  R  P  C  S  W  *  G  E  N  T  E  R  V  D  S  I  S  K  *  E  Q  R  *  *  *  R  S  S  S  C  N  G  *  R  V  G  H  V  Y  S  I  C  W  R  G  *  T  C  A  C  I  A  S  T  L  R  R  T  L  *  C  *  G  D  L  C  *  G  K  G  S  *  V  I  M  Q  N  W  V  P  N  E  G  I  G  F  G  G  I  I  Y  S  T  C  E   : E  T  G  Y  W  R  V  V  H  C  S  S  F  L  L  W  I  V  S  H  C  L  S  *  C  S  R  A  T  K  E  *  T  E  N  H  I  *  P  T  L  S  R  *  Y  A  Y  G  E  E  S  S  C  H  K  S  W  K  V  C  C  N  Y  *  T  T  P  S  E  D  R  H  H  V  N  V  *  D  P  D  T  G  * :   S  R  F  C  P  F  I  G  C  R  G  L  C  C  F  G  E  A  A  G  A  *  R  L  C  S  T  N  S  F  R  H  S  *  F  C  A   : G  *  V  L  A  C  S  L  H  G  C  K  S  T  L  *  S  L  *  G  S  W  T  R  G  Y  Q  :  D  G  F  G  P  C  L  C  S  A  T  S  *  *  *  G  *  S  A  Y  S  C  C  W  Q  G  D  *  V  L  P  Y  F  E  P  *  T  C  Y  P  A  Y  P  S  L  C  K   : G  T  I  I  R  F  I  P  A  C  S  F  C  F  G  F  S  Y  H  G  N  G  T  Y  F  R  K   : G  C  N  Y  *  A  A  S  P  D  F  P  L  S  S  E  G  *  V  S  *  C  S  F  E  Y  Y  Q  *  A  *  S  S  K  P   : G  N  W  N  *  F  A  L  P  I  T  A  A  S  N  C  *  T  C  R  R  *  T  L  E  G  S  A  C  N  N  *  V  H  T  S  I  G  K  S  A  G  C  W  L  F  *  *  Q  A  W  C  S  V  H  A  M  A  K  R  *   : G  L  L  Y  *  R  C  S  S  K  Q  C  K  A  P  C  *  G  I  W  S  K  M  G  N  G  A  Y  N  S  T   : G  A  G  Y  D  *  *  P  T  L  S  L  P  D  D  H  P  S  C  N  F  S  S  C  P  C  L  G  L  R  N  C  L  L  Q  T  P  A  G  Y  N  Y  C  I  K  R  Q  :  G  T  E  Y  Q  V  Q  C  G  *  G  V  A  V  C  Y  S  N  S  *  T  I   : C  C  G  E  H  N  S  T  V  F  G  *  T  </first_frame>
            <second_frame>  K  G  K  K  K  K  P  K  A  P  E  I  A  D  P  S  H  L  L  R  Q  *  I  S  L  P  I  N  F  C  C  S  H  S  I  H  C  F  S   : D  I  *  A  L  R  E  T  M  S  A  I  D  E  P  L  Y  P  I  A  V  L  I  D  E  L  K  N  E  D  I  Q  L  R  L  N  S  I  R  R  L  S  T  I  A  R  A  L  G  E  E  R  T  R  K  E  L  I  P  F  L  S  E  N  N  D  D  D  D  E  V  L  L  A  M  A  E  E  L  G  M  F  I  P  Y  V  G  G  V  E  H  A  R  V  L  L  P  P  L  E  G  L  C  S  V  E  E  T  C  V  R  E  K  A  V  E  S  L  C  K  I  G  S  Q  M  K  E  S  D  L  V  E  S  F  I  P  L  V  K  :  R  L  A  T  G  E  W  F  T  A  R  V  S  S  C  G  L  F  H  I  A  Y  P  S  A  P  E  P  L  K  N  E  L  R  T  I  Y  S  Q  L  C  Q  D  D  M  P  M  V  R  R  A  A  A  T  N  L  G  K  F  A  A  T  I  E  Q  P  H  L  K  T  D  I  M  S  M  F  E  T  L  T  Q  D   : D  Q  D  S  V  R  L  L  A  V  E  D  C  A  A  L  G  K  L  L  E  P  K  D  C  V  A  Q  I  L  S  V  I  V  N  F  A  Q  :  D  K  S  W  R  V  R  Y  M  V  A  N  Q  L  Y  D  L  C  E  A  V  G  P  E  A  T  R :   T  D  L  V  P  A  Y  V  R  L  L  R  D  N  E  A  E  V  R  I  A  A  A  G  K  V  T  K  F  C  R  I  L  S  P  E  L  A  I  Q  H  I  L  P  C  V  K  :  E  L  S  S  D  S  S  Q  H  V  R  S  A  L  A  S  V  I  M  G  M  A  P  I  L  G  K  :  D  A  T  I  E  Q  L  L  P  I  F  L  S  L  L  K  D  E  F  P  D  V  R  L  N  I  I  S  K  L  D  Q  V  N  Q  :  V  I  G  I  D  L  L  S  Q  S  L  L  P  A  I  V  E  L  A  E  D  R  H  W  R  V  R  L  A  I  I  E  Y  I  P  L  L  A  S  Q  L  G  V  G  F  F  D  D  K  L  G  A  L  C  M  Q  W  L  K  D  K  :  V  Y  S  I  R  D  A  A  A  N  N  V  K  R  L  A  E  E  F  G  P  K  W  A  M  E  H  I  I  P  Q  :  V  L  D  M  I  N  D  P  H  Y  L  Y  R  M  T  I  L  H  A  I  S  L  L  A  P  V  L  G  S  E  I  A  C  S  K  L  L  P  V  I  I  T  A  S  K  D  R :   V  P  N  I  K  F  N  V  A  K  V  L  Q  S  V  I  P  I  V  E  Q  S  :  V  V  E  S  T  I  R  P  C  L  V  E  L </second_frame>
            <third_frame>   K  E  R  R  R  S  Q  K  H  R  K  *  Q  I  L  L  I  F  S  G  N  R  S  V  F  R  *  I  S  A  A  L  I  P  S  I  A  S  Q  :  I  F  E  H  C  E  K  P  C  P  L  L  M  S  R  Y  I  L  L  R  F  *  L  M  S  *  R  M  K  T  S  S  L  D  *  I  Q  S  G  D  C  L  P  S  P  V  L  L  V  R  R  E  H  G  K  S  *  F  H  F  *  V  R  T  T  M  M  M  T  K  F  F  L  Q  W  L  K  S  W  A  C  L  F  H  M  L  E  G  L  N  M  R  V  Y  C  F  H  P  *  K  D  F  V  V  L  R  R  L  V  L  G  K  R  Q  L  S  H  Y  A  K  L  G  P  K  *  R  N  R  I  W  W  N  H  L  F  H  L  *  R :   D  W  L  L  E  S  G  S  L  L  E  F  P  P  V  D  C  F  T  L  L  I  L  V  L  Q  S  H  *  R  M  N  *  E  P  Y  I  A  N  F  V  K  M  I  C  L  W  *  G  E  Q  L  P  Q  I  L  E  S  L  L  Q  L  L  N  N  P  I  *  R  P  T  S  C  Q  C  L  R  P  *  H  R  M  :  I  K  I  L  S  V  Y  W  L  S  R  I  V  L  L  W  G  S  C  W  S  L  K  T  V  *  H  K  F  F  P  S  *  L  I  L  R  R :   I  S  L  G  V  F  V  T  W  L  Q  I  N  S  M  I  F  V  R  Q  L  D  Q  R  L  P   : G  R  I  W  S  L  P  M  F  G  Y  F  V  I  M  R  L  K  C  V  *  L  L  L  A  R  *  L  S  F  A  V  F  *  A  L  N  L  L  S  S  I  S  F  L  V  *  R :   N  Y  H  Q  I  H  P  S  M  F  V  L  L  W  L  Q  L  S  W  E  W  H  L  F  *  E  R :   M  Q  L  L  S  S  F  S  R  F  S  S  L  F  *  R  M  S  F  L  M  F  V  *  I  L  S  V  S  L  I  K  *  T  R :   *  L  E  L  I  C  S  P  N  H  C  C  Q  Q  L  L  N  L  Q  K  I  D  T  G  G  F  G  L  Q  *  L  S  T  Y  L  Y  W  Q  V  S  W  V  L  A  F  L  M  T  S  L  V  L  C  A  C  N  G  *  K  I  R :   F  T  L  L  E  M  Q  Q  Q  T  M  *  S  A  L  L  R  N  L  V  Q  N  G  Q  W  S  I  *  F  H  R :   C  W  I  *  L  M  T  H  I  I  F  T  G  *  P  S  F  M  Q  F  L  F  L  P  L  S  W  A  Q  K  L  L  A  P  N  S  C  R  L  *  L  L  H  Q  K  T   : G  Y  R  I  S  S  S  M  W  L  R  C  C  S  L  L  F  Q  *  L  N  N  L :   L  W  R  A  Q  F  D  R  V  W  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61347" stop="61754"/>
                    <exon start="63117" stop="63363"/>
                    <exon start="64319" stop="64431"/>
                    <exon start="64996" stop="65075"/>
                    <exon start="65353" stop="65494"/>
                    <exon start="65665" stop="65745"/>
                    <exon start="66188" stop="66292"/>
                    <exon start="66440" stop="66622"/>
                    <exon start="66963" stop="67055"/>
                    <exon start="67400" stop="67539"/>
                    <exon start="67618" stop="67684"/>
                    <exon start="68433" stop="68471"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1698</number_coding_nucleotides>
                  <number_encoded_amino_acids>566</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALRETMSAIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGMFIPYVGGVEHARVLLPPLEGLCSVEETCVREKAVESLCKIGSQMKESDLVESFIPLVKRLATGEWFTARVSSCGLFHIAYPSAPEPLKNELRTIYSQLCQDDMPMVRRAAATNLGKFAATIEQPHLKTDIMSMFETLTQDDQDSVRLLAVEDCAALGKLLEPKDCVAQILSVIVNFAQDKSWRVRYMVANQLYDLCEAVGPEATRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPKWAMEHIIPQVLDMINDPHYLYRMTILHAISLLAPVLGSEIACSKLLPVIITASKDRVPNIKFNVAKVLQSVIPIVEQSVVESTIRPCLVEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="78631" PGL_stop="76167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78631" e_stop="78563"/>
            <exon e_start="78091" e_stop="78007"/>
            <exon e_start="77909" e_stop="77836"/>
            <exon e_start="77733" e_stop="77610"/>
            <exon e_start="76924" e_stop="76742"/>
            <exon e_start="76483" e_stop="76167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78631" e_stop="78563" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78091" e_stop="78007" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77909" e_stop="77836" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77733" e_stop="77610" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76924" e_stop="76742" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76483" e_stop="76167" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78631" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78618" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78618" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78616" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78616" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78612" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78612" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78611" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78611" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78610" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78610" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78609" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78609" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78606" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78604" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78602" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78602" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78600" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78598" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78597" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78591" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78585" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78580" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78578" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78076" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78072" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78072" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78055" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78038" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77894" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77894" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77872" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77680" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285096" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77674" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77670" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77633" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76898" stop="76742"/>
              <exon start="76483" stop="76168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76875" stop="76742"/>
              <exon start="76483" stop="76217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279258" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76870" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76869" stop="76742"/>
              <exon start="76483" stop="76214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76860" stop="76742"/>
              <exon start="76483" stop="76171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76829" stop="76742"/>
              <exon start="76483" stop="76210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76816" stop="76742"/>
              <exon start="76483" stop="76204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76816" stop="76742"/>
              <exon start="76483" stop="76204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76807" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76807" stop="76742"/>
              <exon start="76483" stop="76174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76745" stop="76742"/>
              <exon start="76483" stop="76169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76472" stop="76210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76429" stop="76177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACTCCCGCAAACAAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG : ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG : GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC : TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG : GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG : GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTCTC</gDNA_template>
            <first_frame> L  T  P  A  N  K  A  F  G  S  H  T  N  I  S  S  V  V  A  S  H  *  Q  :  I  C  E  D  V  H  V  E  A  K  D  S  Q  R  *  R  C  *  T  F  *  V  *  S  D  C  C  A   : G  F  L  *  F  G  K  H  *  P  R  A  E  K  *  I  E  R  P  I  H  Q  F  S  N  :  S  N  *  C  V  R  K  Q  E  G  R  C  Y  P  C  S  L  Q  T  E  E  S  F  P  Q  G  S  C  S  P  C  *  G  V  G  E  E  I  Q  W  Q   : G  C  D  L  Y  C  H  Q  E  D  S  E  T  S  Q  E  R  F  S  C  S  T  T  P  H  Q  N  S  Y  I  C  S  *  C  H  I  G  G  L  G  S  P  C  G  D  C  W  E  A  Y  *  V  S  C  *  W  L  Q  D  N  E   : G  V  L  G  P  Q  G  T  K  Q  H  R  V  *  V  G  D  L  F  S  S  L  Q  K  A  L  R  Q  R  C  C  V  *  V  P  H  H  *  G  L  S  *  C  N  A  C  P  R  L  F  D  V  K  L  H  I  S  G  S  S  F  E  I  L  A  V  P  F  C  F  R  M  Q  R  T  M  *  N  S  Y  Q  F  *  V  K  T  M  L  L  C  H  R  F  W  V  C  L  L  K  T  W  V  S  F  S  L </first_frame>
            <second_frame>  L  L  P  Q  T  K  L  L  A  P  T  Q  T  S  A  L  *  L  P  L  T  S  R :   S  V  K  M  Y  T  S  K  Q  K  I  H  K  D  K  D  A  E  P  S  E  F  E  V  T  V  A  Q  :  A  F  F  D  L  E  N  T  N  Q  E  L  K  S  E  L  K  D  L  Y  I  N  S  A  T :   Q  I  D  V  S  G  N  R  K  A  V  V  I  H  V  P  Y  R  L  R  K  A  F  R  K  V  H  V  R  L  V  R  E  L  E  K  K  F  S  G  K  :  D  V  I  F  I  A  T  R  R  I  V  R  P  P  K  R  G  S  A  A  Q  R  P  R  T  R  T  L  T  S  V  H  D  A  I  L  E  D  L  V  V  P  A  E  I  V  G  K  R  T  R  Y  R  V  D  G  S  K  I  M  K  :  V  Y  L  D  P  K  E  R  N  N  T  E  Y  K  L  E  T  F  S  A  V  Y  R  K  L  S  G  K  D  V  V  F  E  Y  P  I  T  E  A  *  V  N  V  M  H  V  L  V  Y  L  M  *  N  Y  T  L  A  V  P  P  L  K  F  W  Q  F  H  F  V  L  E  C  R  E  L  C  E  I  P  I  N  F  K  L  K  P  C  C  Y  V  I  D  F  G  F  V  Y  *  K  L  G  F  H  S  L   </second_frame>
            <third_frame>   Y  S  R  K  Q  S  F  W  L  P  H  K  H  Q  L  C  S  C  L  S  L  A   : D  L  *  R  C  T  R  R  S  K  R  F  T  K  I  K  M  L  N  L  L  S  L  K  *  L  L  R  R :   L  S  L  I  W  K  T  L  T  K  S  *  K  V  N  *  K  T  Y  T  S  I  Q  Q   : L  K  L  M  C  Q  E  T  G  R  P  L  L  S  M  F  L  T  D  *  G  K  L  S  A  R  F  M  F  A  L  L  G  S  W  R  R  N  S  V  A  R :   M  *  S  L  L  P  P  G  G  *  *  D  L  P  R  E  V  Q  L  L  N  D  P  A  P  E  L  L  H  L  F  M  M  P  Y  W  R  T  W  *  S  L  R  R  L  L  G  S  V  L  G  I  V  L  M  A  P  R  *  *  R :   C  T  W  T  P  R  N  E  T  T  P  S  I  S  W  R  P  F  Q  Q  F  T  E  S  S  Q  A  K  M  L  C  L  S  T  P  S  L  R  L  K  L  M  *  C  M  S  S  S  I  *  C  E  T  T  H  *  R  F  L  L  *  N  F  G  S  S  I  L  F  *  N  A  E  N  Y  V  K  F  L  S  I  L  S  *  N  H  V  A  M  S  *  I  L  G  L  F  I  E  N  L  G  F  I  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78579" stop="78563"/>
                    <exon start="78091" stop="78007"/>
                    <exon start="77909" stop="77836"/>
                    <exon start="77733" stop="77610"/>
                    <exon start="76924" stop="76742"/>
                    <exon start="76483" stop="76364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLTSRSVKMYTSKQKIHKDKDAEPSEFEVTVAQAFFDLENTNQELKSELKDLYINSATQIDVSGNRKAVVIHVPYRLRKAFRKVHVRLVRELEKKFSGKDVIFIATRRIVRPPKRGSAAQRPRTRTLTSVHDAILEDLVVPAEIVGKRTRYRVDGSKIMKVYLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPITEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78613" e_stop="78563"/>
            <exon e_start="78118" e_stop="78007"/>
            <exon e_start="77909" e_stop="77836"/>
            <exon e_start="77733" e_stop="77610"/>
            <exon e_start="76924" e_stop="76742"/>
            <exon e_start="76483" e_stop="76167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78613" e_stop="78563" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78562" i_stop="78119" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78118" e_stop="78007" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77909" e_stop="77836" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77733" e_stop="77610" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76924" e_stop="76742" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76741" i_stop="76484" i_length="258"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76483" e_stop="76167" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78613" stop="78563"/>
              <exon start="78118" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78611" stop="78563"/>
              <exon start="78118" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78609" stop="78563"/>
              <exon start="78118" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78582" stop="78563"/>
              <exon start="78118" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78579" stop="78563"/>
              <exon start="78118" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78098" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78076" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78072" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78072" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78055" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78038" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77894" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77894" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77872" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77680" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285096" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77674" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77670" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77633" stop="77610"/>
              <exon start="76924" stop="76742"/>
              <exon start="76483" stop="76174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76898" stop="76742"/>
              <exon start="76483" stop="76168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76875" stop="76742"/>
              <exon start="76483" stop="76217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279258" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76870" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76869" stop="76742"/>
              <exon start="76483" stop="76214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76860" stop="76742"/>
              <exon start="76483" stop="76171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76829" stop="76742"/>
              <exon start="76483" stop="76210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76816" stop="76742"/>
              <exon start="76483" stop="76204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76816" stop="76742"/>
              <exon start="76483" stop="76204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76807" stop="76742"/>
              <exon start="76483" stop="76173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76807" stop="76742"/>
              <exon start="76483" stop="76174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76745" stop="76742"/>
              <exon start="76483" stop="76169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76472" stop="76210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76429" stop="76177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG : TTTCTGTTTTGATTGGTTAGTGAACAGATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG : GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC : TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG : GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAG : GTGTACTTGGACCCCAAGGAACGAAACAACACCGAGTATAAGTTGGAGACCTTTTCAGCAGTTTACAGAAAGCTCTCAGGCAAAGATGTTGTGTTTGAGTACCCCATCACTGAGGCTTAAGTTAATGTAATGCATGTCCTCGTCTATTTGATGTGAAACTACACATTAGCGGTTCCTCCTTTGAAATTTTGGCAGTTCCATTTTGTTTTAGAATGCAGAGAACTATGTGAAATTCCTATCAATTTTAAGTTAAAACCATGTTGCTATGTCATAGATTTTGGGTTTGTTTATTGAAAACTTGGGTTTCATTCTCTCTC</gDNA_template>
            <first_frame> A  F  G  S  H  T  N  I  S  S  V  V  A  S  H  *  Q  :  F  L  F  *  L  V  S  E  Q  I  C  E  D  V  H  V  E  A  K  D  S  Q  R  *  R  C  *  T  F  *  V  *  S  D  C  C  A   : G  F  L  *  F  G  K  H  *  P  R  A  E  K  *  I  E  R  P  I  H  Q  F  S  N  :  S  N  *  C  V  R  K  Q  E  G  R  C  Y  P  C  S  L  Q  T  E  E  S  F  P  Q  G  S  C  S  P  C  *  G  V  G  E  E  I  Q  W  Q   : G  C  D  L  Y  C  H  Q  E  D  S  E  T  S  Q  E  R  F  S  C  S  T  T  P  H  Q  N  S  Y  I  C  S  *  C  H  I  G  G  L  G  S  P  C  G  D  C  W  E  A  Y  *  V  S  C  *  W  L  Q  D  N  E   : G  V  L  G  P  Q  G  T  K  Q  H  R  V  *  V  G  D  L  F  S  S  L  Q  K  A  L  R  Q  R  C  C  V  *  V  P  H  H  *  G  L  S  *  C  N  A  C  P  R  L  F  D  V  K  L  H  I  S  G  S  S  F  E  I  L  A  V  P  F  C  F  R  M  Q  R  T  M  *  N  S  Y  Q  F  *  V  K  T  M  L  L  C  H  R  F  W  V  C  L  L  K  T  W  V  S  F  S  L </first_frame>
            <second_frame>  L  L  A  P  T  Q  T  S  A  L  *  L  P  L  T  S  S :   F  C  F  D  W  L  V  N  R  S  V  K  M  Y  T  S  K  Q  K  I  H  K  D  K  D  A  E  P  S  E  F  E  V  T  V  A  Q  :  A  F  F  D  L  E  N  T  N  Q  E  L  K  S  E  L  K  D  L  Y  I  N  S  A  T :   Q  I  D  V  S  G  N  R  K  A  V  V  I  H  V  P  Y  R  L  R  K  A  F  R  K  V  H  V  R  L  V  R  E  L  E  K  K  F  S  G  K  :  D  V  I  F  I  A  T  R  R  I  V  R  P  P  K  R  G  S  A  A  Q  R  P  R  T  R  T  L  T  S  V  H  D  A  I  L  E  D  L  V  V  P  A  E  I  V  G  K  R  T  R  Y  R  V  D  G  S  K  I  M  K  :  V  Y  L  D  P  K  E  R  N  N  T  E  Y  K  L  E  T  F  S  A  V  Y  R  K  L  S  G  K  D  V  V  F  E  Y  P  I  T  E  A  *  V  N  V  M  H  V  L  V  Y  L  M  *  N  Y  T  L  A  V  P  P  L  K  F  W  Q  F  H  F  V  L  E  C  R  E  L  C  E  I  P  I  N  F  K  L  K  P  C  C  Y  V  I  D  F  G  F  V  Y  *  K  L  G  F  H  S  L   </second_frame>
            <third_frame>   F  W  L  P  H  K  H  Q  L  C  S  C  L  S  L  A   : V  S  V  L  I  G  *  *  T  D  L  *  R  C  T  R  R  S  K  R  F  T  K  I  K  M  L  N  L  L  S  L  K  *  L  L  R  R :   L  S  L  I  W  K  T  L  T  K  S  *  K  V  N  *  K  T  Y  T  S  I  Q  Q   : L  K  L  M  C  Q  E  T  G  R  P  L  L  S  M  F  L  T  D  *  G  K  L  S  A  R  F  M  F  A  L  L  G  S  W  R  R  N  S  V  A  R :   M  *  S  L  L  P  P  G  G  *  *  D  L  P  R  E  V  Q  L  L  N  D  P  A  P  E  L  L  H  L  F  M  M  P  Y  W  R  T  W  *  S  L  R  R  L  L  G  S  V  L  G  I  V  L  M  A  P  R  *  *  R :   C  T  W  T  P  R  N  E  T  T  P  S  I  S  W  R  P  F  Q  Q  F  T  E  S  S  Q  A  K  M  L  C  L  S  T  P  S  L  R  L  K  L  M  *  C  M  S  S  S  I  *  C  E  T  T  H  *  R  F  L  L  *  N  F  G  S  S  I  L  F  *  N  A  E  N  Y  V  K  F  L  S  I  L  S  *  N  H  V  A  M  S  *  I  L  G  L  F  I  E  N  L  G  F  I  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78579" stop="78563"/>
                    <exon start="78118" stop="78007"/>
                    <exon start="77909" stop="77836"/>
                    <exon start="77733" stop="77610"/>
                    <exon start="76924" stop="76742"/>
                    <exon start="76483" stop="76364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLTSSFCFDWLVNRSVKMYTSKQKIHKDKDAEPSEFEVTVAQAFFDLENTNQELKSELKDLYINSATQIDVSGNRKAVVIHVPYRLRKAFRKVHVRLVRELEKKFSGKDVIFIATRRIVRPPKRGSAAQRPRTRTLTSVHDAILEDLVVPAEIVGKRTRYRVDGSKIMKVYLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPITEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78616" e_stop="78563"/>
            <exon e_start="78091" e_stop="78007"/>
            <exon e_start="77909" e_stop="77836"/>
            <exon e_start="77733" e_stop="77610"/>
            <exon e_start="76924" e_stop="76562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78616" e_stop="78563" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="78562" i_stop="78092" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78091" e_stop="78007" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="78006" i_stop="77910" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77909" e_stop="77836" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77835" i_stop="77734" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77733" e_stop="77610" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77609" i_stop="76925" i_length="685"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="76924" e_stop="76562" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78616" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78612" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78612" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78610" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78604" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78602" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78602" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78598" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78597" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78585" stop="78563"/>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78091" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78072" stop="78007"/>
              <exon start="77909" stop="77836"/>
              <exon start="77733" stop="77610"/>
              <exon start="76924" stop="76815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCTTTTGGCTCCCACACAAACATCAGCTCTGTAGTTGCCTCTCACTAGCAG : ATCTGTGAAGATGTACACGTCGAAGCAAAAGATTCACAAAGATAAAGATGCTGAACCTTCTGAGTTTGAAGTGACTGTTGCGCAG : GCTTTCTTTGATTTGGAAAACACTAACCAAGAGCTGAAAAGTGAATTGAAAGACCTATACATCAATTCAGCAAC : TCAAATTGATGTGTCAGGAAACAGGAAGGCCGTTGTTATCCATGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTTCGCCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGCAAG : GATGTGATCTTTATTGCCACCAGGAGGATAGTGAGACCTCCCAAGAGAGGTTCAGCTGCTCAACGACCCCGCACCAGAACTCTTACATCTGTTCATGATGCCATATTGGAGGACTTGGTAGTCCCTGCGGAGATTGTTGGGAAGCGTACTAGGTATCGTGTTGATGGCTCCAAGATAATGAAGGTAACACTGTGAAGCACCGTAGTTGTCTGTATCTTCCTGATGAAATTTTTACTGCTGTAATTAGGTGGAGAAGTCTTTAGGGTGAAGTAATAGTGCTGCTTGTACATTTTTCACATATGTCAGAACTAAAAACAACTGTGGTTTTCTTTGTTATATCATTTTTAAGTGATAACTTCTGTC</gDNA_template>
            <first_frame> K  A  F  G  S  H  T  N  I  S  S  V  V  A  S  H  *  Q  :  I  C  E  D  V  H  V  E  A  K  D  S  Q  R  *  R  C  *  T  F  *  V  *  S  D  C  C  A   : G  F  L  *  F  G  K  H  *  P  R  A  E  K  *  I  E  R  P  I  H  Q  F  S  N  :  S  N  *  C  V  R  K  Q  E  G  R  C  Y  P  C  S  L  Q  T  E  E  S  F  P  Q  G  S  C  S  P  C  *  G  V  G  E  E  I  Q  W  Q   : G  C  D  L  Y  C  H  Q  E  D  S  E  T  S  Q  E  R  F  S  C  S  T  T  P  H  Q  N  S  Y  I  C  S  *  C  H  I  G  G  L  G  S  P  C  G  D  C  W  E  A  Y  *  V  S  C  *  W  L  Q  D  N  E  G  N  T  V  K  H  R  S  C  L  Y  L  P  D  E  I  F  T  A  V  I  R  W  R  S  L  *  G  E  V  I  V  L  L  V  H  F  S  H  M  S  E  L  K  T  T  V  V  F  F  V  I  S  F  L  S  D  N  F  C  </first_frame>
            <second_frame>  K  L  L  A  P  T  Q  T  S  A  L  *  L  P  L  T  S  R :   S  V  K  M  Y  T  S  K  Q  K  I  H  K  D  K  D  A  E  P  S  E  F  E  V  T  V  A  Q  :  A  F  F  D  L  E  N  T  N  Q  E  L  K  S  E  L  K  D  L  Y  I  N  S  A  T :   Q  I  D  V  S  G  N  R  K  A  V  V  I  H  V  P  Y  R  L  R  K  A  F  R  K  V  H  V  R  L  V  R  E  L  E  K  K  F  S  G  K  :  D  V  I  F  I  A  T  R  R  I  V  R  P  P  K  R  G  S  A  A  Q  R  P  R  T  R  T  L  T  S  V  H  D  A  I  L  E  D  L  V  V  P  A  E  I  V  G  K  R  T  R  Y  R  V  D  G  S  K  I  M  K  V  T  L  *  S  T  V  V  V  C  I  F  L  M  K  F  L  L  L  *  L  G  G  E  V  F  R  V  K  *  *  C  C  L  Y  I  F  H  I  C  Q  N  *  K  Q  L  W  F  S  L  L  Y  H  F  *  V  I  T  S  V </second_frame>
            <third_frame>   S  F  W  L  P  H  K  H  Q  L  C  S  C  L  S  L  A   : D  L  *  R  C  T  R  R  S  K  R  F  T  K  I  K  M  L  N  L  L  S  L  K  *  L  L  R  R :   L  S  L  I  W  K  T  L  T  K  S  *  K  V  N  *  K  T  Y  T  S  I  Q  Q   : L  K  L  M  C  Q  E  T  G  R  P  L  L  S  M  F  L  T  D  *  G  K  L  S  A  R  F  M  F  A  L  L  G  S  W  R  R  N  S  V  A  R :   M  *  S  L  L  P  P  G  G  *  *  D  L  P  R  E  V  Q  L  L  N  D  P  A  P  E  L  L  H  L  F  M  M  P  Y  W  R  T  W  *  S  L  R  R  L  L  G  S  V  L  G  I  V  L  M  A  P  R  *  *  R  *  H  C  E  A  P  *  L  S  V  S  S  *  *  N  F  Y  C  C  N  *  V  E  K  S  L  G  *  S  N  S  A  A  C  T  F  F  T  Y  V  R  T  K  N  N  C  G  F  L  C  Y  I  I  F  K  *  *  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0012O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78579" stop="78563"/>
                    <exon start="78091" stop="78007"/>
                    <exon start="77909" stop="77836"/>
                    <exon start="77733" stop="77610"/>
                    <exon start="76924" stop="76730"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLTSRSVKMYTSKQKIHKDKDAEPSEFEVTVAQAFFDLENTNQELKSELKDLYINSATQIDVSGNRKAVVIHVPYRLRKAFRKVHVRLVRELEKKFSGKDVIFIATRRIVRPPKRGSAAQRPRTRTLTSVHDAILEDLVVPAEIVGKRTRYRVDGSKIMKVTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 247 chains have been computed
$ 
$ memory statistics:
$ 366296 bytes spliced alignments in total
$ 171 spliced alignments have been stored
$ 2142 bytes was the average size of a spliced alignment
$ 16016 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2288 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 261 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:24:58
-->
