<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:37:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8290-2" ref_strand="+" ref_description="SGN-M8290-2 C2_At4g18372-2 [cosii_markers]">
      <seq>gggttctgcacatattttggagcttcatttcttcgagaattttgcaaaattaaacttttatgcaaagggaagaggagttgatggtttaattgtttgtcttagcatatgctgtagctacaattacacaattgtacggcaaatttccttcattgatctaaactggactaaaatgagcaccaaggaactagagacatacctatctgaagttggaagctcaaatcagttagagacaaacaattcaaaatatgtctctcatgtcaagaagctactatatcgacgaatgctggttggtataagtgatggaagattctttctaggtacattttattgtattgataagcaaggaaacataattcttcaagatgcagtcgagtaccgtagcactagaagatctgccccttctccaatggaacagcgagttcttggtctcattttaatcccttccttatgccggaaaacatgtcatgtggattgttctattggcgaacagttgtccctaatgtcgcttggggagcaaaagtcttaattattcgtggcgataaacttgatccaattggatgaacatcttccctgtttgattcatcgtgacaattgattatttcattttcaagtgtgaactttactggtgttatattatcatatgtttttctcttctaggaagaagctgatgagtctgtcatcgataaacttgtcattttctgctgcgtacctctctctaatgttccttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0015I15.1" temp_strand="-" temp_description="C06HBa0015I15.1  AC216643.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0015I15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78871" stop="76692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77655" g_stop="76986" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="734" r_length="667" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0015I15.1" gen_strand="-" ref_id="SGN-M8290-2" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0015I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8290-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77655" e_stop="76986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGGAGTTTATGGTTTAGTTGTTTGTCTCTTAGCATATGCTGTAGCTACAATCACAGAATTGTACGG-AAAATTCCTTCATTGATCTAAACTGGACTAAAAATGAGCACCAAGGAACTAGAGACATACCTATCTGATGTTGGAAGCTCAAATCAGTTCGAGACAAACAGTTCAAAATATGTCTCTCATGTCAAGAAGTTACTATATCGACGAATGCTGGTTGGTATAAGTGATGGAAGGTTCTTTCTAGGTACATTTTATTGTATAGATAAGCAAGGAAACATAATTCTTCAAGATGCAGTCGAGTACCGTAGCACTAGAAGATCTGCCCCTTCTCCAATGGAACAGCGAGTTCTTGGTCTCATTTTAATCCCTTCTTCATGTCGGAAAACATGTCATGTGGATTGTTCTATTGACGAACAGTTGTCACTAATGTCGCTTGGGGAGCAAAAGTCATAATTATTCGTGGCGATAAACTTGATCCAATTGGATGAACATCTTCCCTGTTTGATTTATCGTGACAATTGATTATTTCATTTTCAAGTGTGTACTTTACTGGTGTTATATTATCATATGTTTTTTCTCTTTTAGGAAGAAGCTGATGAGCCTGTCATCGATAAACTTGTTATTTTCTGTTGCATCCCTCTCTCTAGTGTTCCTTATCGATG</genome_strand>
        <mrna_strand>GGAAGAGGAGTTGATGGTTTAATTGTTTG--TCTTAGCATATGCTGTAGCTACAATTACACAATTGTACGGCAAATTTCCTTCATTGATCTAAACTGGACT-AAAATGAGCACCAAGGAACTAGAGACATACCTATCTGAAGTTGGAAGCTCAAATCAGTTAGAGACAAACAATTCAAAATATGTCTCTCATGTCAAGAAGCTACTATATCGACGAATGCTGGTTGGTATAAGTGATGGAAGATTCTTTCTAGGTACATTTTATTGTATTGATAAGCAAGGAAACATAATTCTTCAAGATGCAGTCGAGTACCGTAGCACTAGAAGATCTGCCCCTTCTCCAATGGAACAGCGAGTTCTTGGTCTCATTTTAATCCCTTCCTTATGCCGGAAAACATGTCATGTGGATTGTTCTATTGGCGAACAGTTGTCCCTAATGTCGCTTGGGGAGCAAAAGTCTTAATTATTCGTGGCGATAAACTTGATCCAATTGGATGAACATCTTCCCTGTTTGATTCATCGTGACAATTGATTATTTCATTTTCAAGTGTGAACTTTACTGGTGTTATATTATCATATG-TTTTTCTCTTCTAGGAAGAAGCTGATGAGTCTGTCATCGATAAACTTGTCATTTTCTGCTGCGTACCTCTCTCTAATGTTCCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8290" ref_strand="+" ref_description="SGN-M8290 C2_At4g18372 [cosii_markers]">
      <seq>agaaaaaaaaaagaggcattgttataacagcgcattgtgaagtggaatacgatttgcgccgaaataccgaaacaaagtagaagcaagtgttgcacatattttttggagcttagtttctccagaattttgcaaaatttattcaaaagggaagaggagtttatggtttagttgtttgtctcttagcatatgctgtagctacaatcacagaattgtacggaaaattccttcattgatctaaactggactaaaaatgagcaccaaggaactagagacatacctatctgatgttggaagctcaaatcagttcgagacaaacagttcaaaatatgtctctcatgtcaagaagttactatatcgacgaatgctggttggtataagtgatggaaggttctttctaggtacattttattgtatagataagcaaggaaacataattcttcaagatgcagtcgagtaccgtagcactagaagatctgccccttctccaatggaacagcgagttcttggtctcattttaatcccttcttcatgtcggaaaacatgtcatgtggattgttctattgacgaacagttgtcactaatgtcgcttggggagcaaaagtcataattattcgtggcgataaacttgatccaattggatgaacatcttccctgtttgatttatcgtgacaattgattatttcattttcaagtgtgtactttactggggttatattatcatatgttttttctcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0015I15-DbQBf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0015I15.1" temp_strand="-" temp_description="C06HBa0015I15.1  AC216643.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0015I15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78965" stop="76757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78665" g_stop="78520" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78519" i_stop="77656" i_length="864">
            <donor d_prob="0.597" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77655" g_stop="77057" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="745" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="782"/>
      <MATCH_line gen_id="C06HBa0015I15.1" gen_strand="-" ref_id="SGN-M8290" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0015I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78665" e_stop="78520"/>
          <exon e_start="77655" e_stop="77057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAAAAGAGGCATTGTTATAACAGCGCATTGTGAAGTGGAATACGATTTGCGCCGAAATACCGAAACAAAGTAGAAGCAAGTGTTGCACATATTTTTTGGAGCTTAGTTTCTCCAGAATTTTGCAAAATTTATTCAAAAGGTACCCATGAAATTCTGCTCTTGCTAATAATTGAGGTATGGGGTTAGGGTTTTGAGATATATCGTTTTCTCTAATGCGTTTATTTAAGAATTTAATTGTCGGATTGTTAAAATAGATGGTTTGTGAAGAAGATGAGTTTAGTTTTTATGATATATCTGCTATATAAACCCCAAAAGTGAGTATCTTGACGCTTTATTCAATTCCATCCTTTTAACAGACAAATCTCAATTTCTGGCTGATTTTTATTTGAGTATAGCTTTATTCTTCATCATAATGACCACATTTCTCATCGTTATTTGCATTTTAGAGGGTTGGTGAGGGGTGTCGTATAGGGTCGCGAGGGTAGAGTGTACCTTACCCGGGTCGTGGCGTGTAGAGTATATGCAAATGTTACCCTACCTCTCGGAGGTAGAAAGAGTGTTTCTGTATACACTGAGTATATTGTAACGTGTCTAAATTGTGACTTTATAGTGATTGTTGTATTCAACATGTTGGATCTCTATGTTCTGCCCAAGAGTATGCCAATTCCTATATGGTGTGGAACTGAGTCTCTTACGGTGTTTTTTATTATAATATCCTTGTTCAAAGACTAAGAAGACTCTTCTTTTTCTTGTTCACACCTACACCCAAGATATCACAATTTTCTTGATTTTTTATATATACAGATTCATTTCTCGACTGCTATCGCTTGTTCTATTTTACTGCGGGCAGAGCAGAGGGGAGGAGAAATTAACGAAAGATCTTCTGTTTTAGAGTTTGCTTTGAATGCTTGCCCTTTAATGTATCATATATTGCCCAAGAGCGGTCTGGACACCACGGTTATCAAAATTTACCTGATTATTTCCCTGTCTTTACTTTCTGCAGGGAAGAGGAGTTTATGGTTTAGTTGTTTGTCTCTTAGCATATGCTGTAGCTACAATCACAGAATTGTACGGAAAATTCCTTCATTGATCTAAACTGGACTAAAAATGAGCACCAAGGAACTAGAGACATACCTATCTGATGTTGGAAGCTCAAATCAGTTCGAGACAAACAGTTCAAAATATGTCTCTCATGTCAAGAAGTTACTATATCGACGAATGCTGGTTGGTATAAGTGATGGAAGGTTCTTTCTAGGTACATTTTATTGTATAGATAAGCAAGGAAACATAATTCTTCAAGATGCAGTCGAGTACCGTAGCACTAGAAGATCTGCCCCTTCTCCAATGGAACAGCGAGTTCTTGGTCTCATTTTAATCCCTTCTTCATGTCGGAAAACATGTCATGTGGATTGTTCTATTGACGAACAGTTGTCACTAATGTCGCTTGGGGAGCAAAAGTCATAATTATTCGTGGCGATAAACTTGATCCAATTGGATGAACATCTTCCCTGTTTGATTTATCGTGACAATTGATTATTTCATTTTCAAGTGTGTACTTTACTGGTGTTATATTATCATATGTTTTTTCTCTTTTAGGAAGAA</genome_strand>
        <mrna_strand>AGAAAAAAAAAAGAGGCATTGTTATAACAGCGCATTGTGAAGTGGAATACGATTTGCGCCGAAATACCGAAACAAAGTAGAAGCAAGTGTTGCACATATTTTTTGGAGCTTAGTTTCTCCAGAATTTTGCAAAATTTATTCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGGAGTTTATGGTTTAGTTGTTTGTCTCTTAGCATATGCTGTAGCTACAATCACAGAATTGTACGGAAAATTCCTTCATTGATCTAAACTGGACTAAAAATGAGCACCAAGGAACTAGAGACATACCTATCTGATGTTGGAAGCTCAAATCAGTTCGAGACAAACAGTTCAAAATATGTCTCTCATGTCAAGAAGTTACTATATCGACGAATGCTGGTTGGTATAAGTGATGGAAGGTTCTTTCTAGGTACATTTTATTGTATAGATAAGCAAGGAAACATAATTCTTCAAGATGCAGTCGAGTACCGTAGCACTAGAAGATCTGCCCCTTCTCCAATGGAACAGCGAGTTCTTGGTCTCATTTTAATCCCTTCTTCATGTCGGAAAACATGTCATGTGGATTGTTCTATTGACGAACAGTTGTCACTAATGTCGCTTGGGGAGCAAAAGTCATAATTATTCGTGGCGATAAACTTGATCCAATTGGATGAACATCTTCCCTGTTTGATTTATCGTGACAATTGATTATTTCATTTTCAAGTGTGTACTTTACTGGGGTTATATTATCATATGTTTTTTCTCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="78665" PGL_stop="76986"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78665" e_stop="78520"/>
            <exon e_start="77655" e_stop="76986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.597" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78665" e_stop="78520" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.597" acc_prob="0.968">
            <gDNA_intron_boundary i_start="78519" i_stop="77656" i_length="864"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="77655" e_stop="76986" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78665" stop="78520"/>
              <exon start="77655" stop="77057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77655" stop="76986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8290-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAAAAAAAGAGGCATTGTTATAACAGCGCATTGTGAAGTGGAATACGATTTGCGCCGAAATACCGAAACAAAGTAGAAGCAAGTGTTGCACATATTTTTTGGAGCTTAGTTTCTCCAGAATTTTGCAAAATTTATTCAAAAG : GGAAGAGGAGTTTATGGTTTAGTTGTTTGTCTCTTAGCATATGCTGTAGCTACAATCACAGAATTGTACGGAAAATTCCTTCATTGATCTAAACTGGACTAAAAATGAGCACCAAGGAACTAGAGACATACCTATCTGATGTTGGAAGCTCAAATCAGTTCGAGACAAACAGTTCAAAATATGTCTCTCATGTCAAGAAGTTACTATATCGACGAATGCTGGTTGGTATAAGTGATGGAAGGTTCTTTCTAGGTACATTTTATTGTATAGATAAGCAAGGAAACATAATTCTTCAAGATGCAGTCGAGTACCGTAGCACTAGAAGATCTGCCCCTTCTCCAATGGAACAGCGAGTTCTTGGTCTCATTTTAATCCCTTCTTCATGTCGGAAAACATGTCATGTGGATTGTTCTATTGACGAACAGTTGTCACTAATGTCGCTTGGGGAGCAAAAGTCATAATTATTCGTGGCGATAAACTTGATCCAATTGGATGAACATCTTCCCTGTTTGATTTATCGTGACAATTGATTATTTCATTTTCAAGTGTGTACTTTACTGGTGTTATATTATCATATGTTTTTTCTCTTTTAGGAAGAAGCTGATGAGCCTGTCATCGATAAACTTGTTATTTTCTGTTGCATCCCTCTCTCTAGTGTTCCTTATCGATG</gDNA_template>
            <first_frame> R  K  K  K  E  A  L  L  *  Q  R  I  V  K  W  N  T  I  C  A  E  I  P  K  Q  S  R  S  K  C  C  T  Y  F  L  E  L  S  F  S  R  I  L  Q  N  L  F  K  R :   E  E  E  F  M  V  *  L  F  V  S  *  H  M  L  *  L  Q  S  Q  N  C  T  E  N  S  F  I  D  L  N  W  T  K  N  E  H  Q  G  T  R  D  I  P  I  *  C  W  K  L  K  S  V  R  D  K  Q  F  K  I  C  L  S  C  Q  E  V  T  I  S  T  N  A  G  W  Y  K  *  W  K  V  L  S  R  Y  I  L  L  Y  R  *  A  R  K  H  N  S  S  R  C  S  R  V  P  *  H  *  K  I  C  P  F  S  N  G  T  A  S  S  W  S  H  F  N  P  F  F  M  S  E  N  M  S  C  G  L  F  Y  *  R  T  V  V  T  N  V  A  W  G  A  K  V  I  I  I  R  G  D  K  L  D  P  I  G  *  T  S  S  L  F  D  L  S  *  Q  L  I  I  S  F  S  S  V  Y  F  T  G  V  I  L  S  Y  V  F  S  L  L  G  R  S  *  *  A  C  H  R  *  T  C  Y  F  L  L  H  P  S  L  *  C  S  L  S  M </first_frame>
            <second_frame>  E  K  K  K  R  H  C  Y  N  S  A  L  *  S  G  I  R  F  A  P  K  Y  R  N  K  V  E  A  S  V  A  H  I  F  W  S  L  V  S  P  E  F  C  K  I  Y  S  K   : G  K  R  S  L  W  F  S  C  L  S  L  S  I  C  C  S  Y  N  H  R  I  V  R  K  I  P  S  L  I  *  T  G  L  K  M  S  T  K  E  L  E  T  Y  L  S  D  V  G  S  S  N  Q  F  E  T  N  S  S  K  Y  V  S  H  V  K  K  L  L  Y  R  R  M  L  V  G  I  S  D  G  R  F  F  L  G  T  F  Y  C  I  D  K  Q  G  N  I  I  L  Q  D  A  V  E  Y  R  S  T  R  R  S  A  P  S  P  M  E  Q  R  V  L  G  L  I  L  I  P  S  S  C  R  K  T  C  H  V  D  C  S  I  D  E  Q  L  S  L  M  S  L  G  E  Q  K  S  *  L  F  V  A  I  N  L  I  Q  L  D  E  H  L  P  C  L  I  Y  R  D  N  *  L  F  H  F  Q  V  C  T  L  L  V  L  Y  Y  H  M  F  F  L  F  *  E  E  A  D  E  P  V  I  D  K  L  V  I  F  C  C  I  P  L  S  S  V  P  Y  R   </second_frame>
            <third_frame>   K  K  K  R  G  I  V  I  T  A  H  C  E  V  E  Y  D  L  R  R  N  T  E  T  K  *  K  Q  V  L  H  I  F  F  G  A  *  F  L  Q  N  F  A  K  F  I  Q  K  :  G  R  G  V  Y  G  L  V  V  C  L  L  A  Y  A  V  A  T  I  T  E  L  Y  G  K  F  L  H  *  S  K  L  D  *  K  *  A  P  R  N  *  R  H  T  Y  L  M  L  E  A  Q  I  S  S  R  Q  T  V  Q  N  M  S  L  M  S  R  S  Y  Y  I  D  E  C  W  L  V  *  V  M  E  G  S  F  *  V  H  F  I  V  *  I  S  K  E  T  *  F  F  K  M  Q  S  S  T  V  A  L  E  D  L  P  L  L  Q  W  N  S  E  F  L  V  S  F  *  S  L  L  H  V  G  K  H  V  M  W  I  V  L  L  T  N  S  C  H  *  C  R  L  G  S  K  S  H  N  Y  S  W  R  *  T  *  S  N  W  M  N  I  F  P  V  *  F  I  V  T  I  D  Y  F  I  F  K  C  V  L  Y  W  C  Y  I  I  I  C  F  F  S  F  R  K  K  L  M  S  L  S  S  I  N  L  L  F  S  V  A  S  L  S  L  V  F  L  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0015I15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77563" stop="77195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGLKMSTKELETYLSDVGSSNQFETNSSKYVSHVKKLLYRRMLVGISDGRFFLGTFYCIDKQGNIILQDAVEYRSTRRSAPSPMEQRVLGLILIPSSCRKTCHVDCSIDEQLSLMSLGEQKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0015I15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78625" stop="78520"/>
                    <exon start="77655" stop="77564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGIRFAPKYRNKVEASVAHIFWSLVSPEFCKIYSKGKRSLWFSCLSLSICCSYNHRIVRKIPSLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 3552 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1776 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:37:24
-->
