<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:23:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3912" stop="5099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4212" g_stop="4799" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4212" e_stop="4799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGAAAGGCCAATGTTATGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGCACTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGAGGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAATTTGATGACGAAAAATTATGTCTCATTCGAGACAGAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTACTCGGTATTCCATCCATCCGGGAGCGGCAAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAATGTGAGCACCAGCGGCCAGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439930" ref_strand="+" ref_description="SGN-E439930 [cSTA-14-M1]">
      <seq>tttgcattgtatctgagacatggttgtggtaagaggatgatgtactattttcgagagtcgtatcgcgcgccgcgatggatattatatttcgagggacgtatcgcgcgccgcgaaggttactattttatcgagggtcgtgtcgtgcaccgcgacagatgcatggatacatatgtcccccatgggtcccagactgagagacagcgggtgtgtatcgttaagaaagacatgcatcacgatatttgacattgcatctcatggcattgcacatttttattattgatgaacttgaacatgtgtttttgctgatcttgtgattgtttctctgtgaagcttgtgactgttgaatattgagttgttattgagaatgtgtaaactgatagagcgtggttattgattggtgttcttggtaaactgttaggctgtagcgtggaggtttagatagggcgtaaggagtacccgtattcttttcacttaacttgtgtttagaggtttgcttgttgggtaccgcgtggtttggtactcaccccttgcttttataattttttgtaggttacgagcccgaatttttgtgatatcttccattctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6701" stop="7887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7001" g_stop="7587" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E439930" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7001" e_stop="7587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATTGTATCTGAGACATTGTTGTGGTAAGAGGATGGTGTACTATTTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCACGCGCCGCGAAGGTTACTA-CTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGAACTGAGAGACAGCGGGTGTGTATCGTTAGGAAAGACATGCATCACGATATTTGACATTGCATCTCATGACATTGCACA-TCTTATTATTGATGAACTTGAACATGTG-TTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGTCTGTGATTGTTGAATATTGAGTTGATATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGTGTAAGGAGTACCCGTATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCTGGATCTTTGTGATACCTTCTATTCTCTTCG</genome_strand>
        <mrna_strand>TTTGCATTGTATCTGAGACATGGTTGTGGTAAGAGGATGATGTACTATTTTCGAGAGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTATTTTATCGAGGGTCGTGTCGTGCACCGCGACAGATGCATGGATACATATGTCCCCCATGGGTCCCAGACTGAGAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGCATTGCACATTTTTATTATTGATGAACTTGAACATGTGTTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGCGTGGTTATTGATTGGTGTTCTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGTATTCTTTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTTTATAATTTTTTGTAGGTTACGAGCCCGAATTTTTGTGATATCTTCCATTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733350" ref_strand="+" ref_description="SGN-E733350 [LB04CE10]">
      <seq>cgattttggaaactagactccaggttgctggtgggattaatgattcatatgtgccataccgtgagcggctatcataccatgatcttcctgttaactcagtgcgctcccagcccgagtttaacccccctccagctggtttgcgatcagaatacctccatggtggtacatctactgtgttcagttctgccagaagcatgcttcctgagtacccttcatcttcagcgggccctctgtacaggcaccctcatcgacgtgaacatcgtttttaggtttacaaaaaggtaaccatcacatgtggttctggtaatcagaatcatgcacagcttaaaacttgagactatctagaatgttttcagaatccattggggtttctgttttattttgtttaaactatattagatattacttctccattcttgctgtaagcaagagatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13917" stop="12882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13618" g_stop="13168" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E733350" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13618" e_stop="13168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATCTAGAATGTTTTCAGAATCCATTGGGGTTTCTGTTTTATTTTGTTTAAACTATATTAGATATTACTTCTCCATTCTTGCTGTAAGCAAGAGATTTATGATTTGATCGAAC</genome_strand>
        <mrna_strand>CGATTTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATCTAGAATGTTTTCAGAATCCATTGGGGTTTCTGTTTTATTTTGTTTAAACTATATTAGATATTACTTCTCCATTCTTGCTGTAAGCAAGAGATTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707720" ref_strand="+" ref_description="SGN-E707720 [FA33DB11]">
      <seq>gaggcgattcctgatcgcgctcgacaatttgagcaggttgaagatcgtcggtaccgcgagcaggttgaagatcgtcggtaccgcgagcaggctgaagatcgtcggtaccgcgagcaggctgaagatcgtctgtaccgtgagcaggttgaagatcgtgggtaccgtgaacatcctcatttgcatggaaggggcttgaatacatctactttgattccattagcccctcttcgacctttaccaccactggttcaatcttatgcatatgacaggactttgggaagagatccatatggacgggacacagtgataccgcataatgattcttacaggcagaggcgattggtggaactagctgatccatataggcgggacactgtgataggcaatccggatgttcacagaggacgagcattgttagagtcacatgatcactacagacgggagggaatttcagagcctcgtgagtatcgtcagcctctgaatttggaaactagactccaggttgctggtgggattaatgattcatatgtgccataccgtgagcggctatcataccatgatcctcctgttaactcagtgcgctcccagcccgagtttaacccccctccagctggtttgcgatcagaatacctccatggtggtacatctactgtgttcagttctgccagaatcatgcttcctgagtacccttcatcttcagcgggccctctgtacgggcaccctcatcgacgtgaacatcgtttttaggtttacaaaaaggtaaccatcacatgtggttctggtaatcagaatcatgcacagcttaaaacttgagactatgtagaaggttttcagaatccattggggtttctgttttattttggtttaactatattagatattacttctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14388" stop="12906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14097" g_stop="13206" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="891" r_length="891" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E707720" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14097" e_stop="13206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATCTAGAATGTTTTCAGAATCCATTGGGGTTTCTGTTTTATTTTGTTTAAACTATATTAGATATTACTTCTCCA</genome_strand>
        <mrna_strand>GAGGCGA-TTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTGGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCATATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCATATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCCTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAATCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACGGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATGTAGAAGGTTTTCAGAATCCATTGGGGTTTCTGTTTTATTTTGGTTTAACTATATTAGATATTACTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700920" ref_strand="+" ref_description="SGN-E700920 [FA14CB06]">
      <seq>caccaggagcaagttccgttgccaattatcctctgaacaggtgaaggacctgtgcaagcttttcaagactgcggtcaaagggtccaggtccaatgagacacagctcagacttgagaccaatgtggtacccaaacgagacagagctaagaggcatggtctggatgaaagtagacgtcctgatcgcgctcgacaatttgagcaggttgaagatcgtcggtaccgcgagcaggttgatatcgtcggtaccgcgagcaggctgaagatcgtcggtaccgcgagcaggctgaagatcgtctgtaccgtgagcaggttgaagatcgtgggtaccgtgaacatcctcatttgcatggaaggggcttgaatacatctactttgattccattagcccctcttcgacctttaccaccactggttcaatcttatgcatatgacaggactttgggaagagatccatatggacgggacacagtgataccgcataatgattcttacaggcagaggcgattggtggaactagctgatccatataggcgggacactgtgataggcaatccggatgttcacagaggacgagcattgttagagtcacatgatcactacagacgggagggaatttcagagcctcgtgagtatcgtcagcctctgaatttggaaactagactccaggttgctggtgggattaatgattcatatgtgccataccgtgagcggctatcataccatgatcctcctgttaactcagtgcgctcccagcccgagtttaacccccctccagctggtttgcgatcagaatacctccatggtggtacatctactgtgttcagttctgccagaatcatgcacagcttaaaacttgaaactatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14507" stop="12976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14262" g_stop="13429" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13428" i_stop="13308" i_length="121">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13307" g_stop="13276" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="865" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E700920" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14262" e_stop="13429"/>
          <exon e_start="13307" e_stop="13276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTTTCAAGACTGCGGTCAAAGGGTCCAGGTCCAATGAGACACAGCTCAGACTTGAGACCAATGTGGTACCCAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATCT</genome_strand>
        <mrna_strand>CACCAGGAGCAAGTTCCGTTGCCAATTATCCTCTGAACAGGTGAAGGACCTGTGCAAGCTTTTCAAGACTGCGGTCAAAGGGTCCAGGTCCAATGAGACACAGCTCAGACTTGAGACCAATGTGGTACCCAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGTTG-ATATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTGGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCATATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCATATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCCTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAG.........................................................................................................................AATCATGCACAGCTTAAAACTTGAAACTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699430" ref_strand="+" ref_description="SGN-E699430 [FA10AB07]">
      <seq>cgcctcgaggaggctgaagatcgtcggtaccgcgagcaggctgaagatcgtctgtaccgtgagcaggttgaagatcgtgggtaccgtgaacatcctcatttgcatggaaggggcttgaatacatctactttgattccattagcccctcttcgacctttaccaccactggttcaatcttatgcatatgacaggactttgggaagagatccatatggacgggacacagtgataccgcataatgattcttacaggcagaggcgattggtggaactagctgatccatataggcgggacactgtgataggcaatccggatgttcacagaggacgagcattgttagagtcacatgatcactacagacgggagggaatttcagagcctcgtgagtatcgtcagcctctgaatttggaaactagactccaggttgctggtgggattaatgattcatatgtgccataccgtgagcggctatcataccatgatcctcctgttaactcagtgcgctcccagcccgagtttaacccccctccagctggtttgcgatcagaatacctccatggtggtacatctactgtgttcagttctgccagaatcatgcttcctgagtacccttcatcttcagcgggccctctgtacgggcaccctcatcgacgtgaacatcgtttttaggtttaccaaaaggtaaccatcacatgtggttctggtaatcagaatcatgcacagcttaaaaccttgagactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14316" stop="12978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14018" g_stop="13277" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E699430" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14018" e_stop="13277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAA-CTTGAGACTATC</genome_strand>
        <mrna_strand>CGCCTCGAGGAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTGGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCATATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCATATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCCTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAATCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACGGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACCAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACCTTGAGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559244" ref_strand="+" ref_description="SGN-E559244 [18710]">
      <seq>caaacgagacagagctaagaggcatggtctggatgaaagaagacgtcctgatcgtgctcgacaatttgagccggttgaagaccgtcggtaccgcgagcaggttgaagatcgtcggtaccgtgagcaggctgaagatcgtctgtaccgtgagcaggttgaagatcgtgggtaccgtgaacatccccatttgcatggaaggggattgattacatctactttgattccattagcccctcttcaacctttaccaccacctgttcaatcttatgcatataacaggactttgggaagagatccttatggacaggacacagtgatacagcataatgattcttacaggcagaggcgattggtggaactcgctgatccttataggcgggacactgtgataggcaatcctgatgttcacagaagacgagcattggtagagtcacatgatcactacagatgggagggaatcccagagcctcgtgaatatcatcagcctctgaatttggaaactagactccaggttgctggtggaattaatgattcatatgtgccataccgtgagcgtctatcataccatgatcctcctcttaactcagtgcgctcccaagcctgaagtttaacccccttctccagctggtttgcgatcagaataacttcccatggtgggtacatctactgtgttcagttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14339" stop="13132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14133" g_stop="13432" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E559244" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14133" e_stop="13432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCC-AGCCCG-AGTTTAACCCCC--CTCCAGCTGGTTTGCGATCAGAAT-ACCT-CCATGGT-GGTACATCTACTGTGTTCAGTTCTGC</genome_strand>
        <mrna_strand>CAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGAAGACGTCCTGATCGTGCTCGACAATTTGAGCCGGTTGAAGACCGTCGGTACCGCGAGCAGGTTGAAGATCGTCGGTA-C-----C--G-TG-AG--C------A--G-G--C----TGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCCCATTTGCATGGAAGGGGATTGATTACATCTACTTTGATTCCATTAGCCCCTCTTCAACCTTTACCACCACCTGTTCAATCTTATGCATATAACAGGACTTTGGGAAGAGATCCTTATGGACAGGACACAGTGATACAGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTCGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCTGATGTTCACAGAAGACGAGCATTGGTAGAGTCACATGATCACTACAGATGGGAGGGAATCCCAGAGCCTCGTGAATATCATCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGAATTAATGATTCATATGTGCCATACCGTGAGCGTCTATCATACCATGATCCTCCTCTTAACTCAGTGCGCTCCCAAGCCTGAAGTTTAACCCCCTTCTCCAGCTGGTTTGCGATCAGAATAACTTCCCATGGTGGGTACATCTACTGTGTTCAGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317383" ref_strand="+" ref_description="SGN-E317383 [cTOA-28-I20]">
      <seq>tctttcactaccctacatttaacattttcctataaccactgctttagataagtcaaatttagctctttgttttgatctctgtttcaaaagaaaacacctattaagcagccatcatctttcttatcttttccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgttttttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcagaacagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgttcgcagctacaagcctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15815" stop="17506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16115" g_stop="16586" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17206" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="714" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E317383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16115" e_stop="16586"/>
          <exon e_start="16965" e_stop="17206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACTACCCTACATTTAACATTTTCCTATAACCACTGCTTTAGATAAGTCAAATTTAGCTCTTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTG-TTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGG</genome_strand>
        <mrna_strand>TCTTTCACTACCCTACATTTAACATTTTCCTATAACCACTGCTTTAGATAAGTCAAATTTAGCTCTTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTA-CAAGCCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317344" ref_strand="+" ref_description="SGN-E317344 [cTOA-28-I19]">
      <seq>tctttcactaccctacatttaacattttcctataaccactgctttagataagtcaaatttagctctttgttttgatctctgtttcaaaagaaaacacctattaagcagccatcatctttcttatcttttccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgttttttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcagaacagccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15815" stop="17407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16115" g_stop="16586" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17107" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="616" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E317344" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16115" e_stop="16586"/>
          <exon e_start="16965" e_stop="17107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACTACCCTACATTTAACATTTTCCTATAACCACTGCTTTAGATAAGTCAAATTTAGCTCTTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTG-TTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACT</genome_strand>
        <mrna_strand>TCTTTCACTACCCTACATTTAACATTTTCCTATAACCACTGCTTTAGATAAGTCAAATTTAGCTCTTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537506" ref_strand="+" ref_description="SGN-E537506 [TUS-56-C7]">
      <seq>tttgttttgatctctgtttcaaagaaaacacctattaagcagccatcatctttcttatcttttccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcataaatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcagaacagccactaggaactttcgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15880" stop="17421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16180" g_stop="16586" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17121" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="563" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E537506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16180" e_stop="16586"/>
          <exon e_start="16965" e_stop="17121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCC</genome_strand>
        <mrna_strand>TTTGTTTTGATCTCTGTTTC-AAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAAATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266465" ref_strand="+" ref_description="SGN-E266465 [cLEI-3-N24]">
      <seq>ttgttttgatctctgtttcaaaagaaaacacctattaagcagccatcatctttcttatcttttccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15881" stop="17372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16181" g_stop="16586" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17072" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="514" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E266465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16181" e_stop="16586"/>
          <exon e_start="16965" e_stop="17072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGA</genome_strand>
        <mrna_strand>TTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735518" ref_strand="+" ref_description="SGN-E735518 [LC01DH02]">
      <seq>cctttcttatcttttccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttttaaaaaaacaaaaattttgggtgttcgggggtctacaaaaaaaggaaaacctaaaaggggggattttgttttttgtttgttgttgttcaaaggggaatatgtttgagtgctaaaattaaagctaaaagcccttttcatacagggctaaattcaaaatctgttaccataaatgggggggaaaaaaattcaagctccagggttccttcaactactaaaagtgaaggaaaaatattgcagtctcccaatttaaaaacctttattttttctaatctcaaaacagccactaggaattttcttcccaatagtgtgctggaaaaaggggaatttgaatcattttttaaagggggaatcaataaaaacactttcccacctaccaaccctggaacaggtgtgatctttgctgtaaaaaggcttaatcaaaaaggttttcaaggccacagggaatggttggcaaaatttaactatttggggcagttttttcatccccatcttgaaaagctaattggctactgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15930" stop="18026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16229" g_stop="16586" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.943" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17272" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="666" r_length="308" r_score="0.864"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17661" g_stop="17726" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="732" r_length="66" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E735518" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16229" e_stop="16586"/>
          <exon e_start="16965" e_stop="17272"/>
          <exon e_start="17661" e_stop="17726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTG</genome_strand>
        <mrna_strand>CCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTAAAAAAACAAAAATTTTGGGTGTTCGGGGGTCTACAAAAAAAGGAAAACCTAAAAGGGGGGATTTTGTTTTTTGTTTGTTGTTGTTCAAAGGGGAATATGTTTGAGTGCTAAAATTAAAGCTAAAAGCCCTTTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAAATCTGTTACCATAAATGGGGGGGAAAAAAATTCAAGCTCCAGGGTTCCTTCAACTACTAAAAGTGAAGGAAAAATATTGCAGTCTCCCAATTTAAAAACCTTTATTTTTTCTAATCTCAAAACAGCCACTAGGAATTTTCTTCCCAATAGTGTGCTGGAAAAAGGGGAATTTGAATCATTTTTTAAAGGGGGAATCAATAAAAACACTTTCCCACCTACCAACCCTGGAACAGGTGTGATCTTTGCTGTAAAAAGGCTTAATCAAAAAGGTTTTCAAGGCCACAGGGAATGGTTG....................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATTTAACTATTTGGGGCAGTTTTTTCATCCCCATCTTGAAAAGCTAATTGGCTACTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578393" ref_strand="+" ref_description="SGN-E578393 [LE12DD02]">
      <seq>tccaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcattttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgttttttttttaatatacaagtagtttgtgtgttctgtggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcaaaacagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgttcgcagctaccaagcctgggacaggtgtgatcattgctgtgaaaagcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15943" stop="17539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16243" g_stop="16586" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17239" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="613" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E578393" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16243" e_stop="16586"/>
          <exon e_start="16965" e_stop="17239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAAT</genome_strand>
        <mrna_strand>TCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCA-TTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTG---TTTTTTTTTT-AATATACAAGTAGTTTGTGTGTTCTGTGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAAAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAA-GCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745745" ref_strand="+" ref_description="SGN-E745745 [GI|47105125]">
      <seq>gaaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcattttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcagaatagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgttcgcagctaccaagcctgggacaggtgtgatcattgctgtgaaaaggcttaatcaagaaggttttcaaggtcacagggaatggctggcagaagttaactatttggggcagttttttcatcctcatcttgtaaagctgattggctactgcttggaggacgaacatcgtcttttggtttatgagttcatgcctcggggcagcttggaaaaccatttgtttaggagaggttcttatttccagcctctttcttggaaactacgcttgaaggttgctctaggagctgcaaaagggcttgcttttctccacagtgctgagactaaagtgatatatcgagacttcaaaacctcgaatattttgcttgattcgaactacactgccaaactctcagactttggattagccaaggatgggccaacaggcgataaaagccatgtctctacaagggttatggggacctatggatatgccgctccagaatacatggctactggtcatttaactagcaagagtgatgtgtatagttttggagttgtcctccttgaaatgctgtcaggtcgtagggcaatcgacaagaatagaccatccggagaacacaatctagtggagtgggcgaaaccttacctaggtaacaaacgtaaggtcttccgtgttctggatacccgtcttgaaggccagtattcaatggaggtggcgagtaaagtagctaaccttgccctgcggtgcctatccaaagatcctcggtttagaccaagcatgagtgacattgttaaagaactggagcaactttatcaacaatctaaagattcaggaaatactcgcagccacgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctaatagaaatccttcagttgcttatccgagaccgtctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttttgtcttatatgtgtttatcaagcttgataagtagttgaggctgatgaagaacctctgcacatttgcagtatcagctggctgattgtacagttgtttttggctaatgtattgaatctatactttctgtaggtcctgaatgtgtttgtaactttgagttttgctcacagctcactatatgttcactttttgacactaaaggaatgcatactaccctttcatactgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15946" stop="19700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16245" g_stop="16586" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17272" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="647" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17661" g_stop="17796" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="783" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17797" i_stop="17881" i_length="85">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17882" g_stop="18024" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="926" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18025" i_stop="18124" i_length="100">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18125" g_stop="18248" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1050" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18249" i_stop="18691" i_length="443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18692" g_stop="19400" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1051" r_stop="1759" r_length="709" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1760" polyA_stop="1776"/>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E745745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1762</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16245" e_stop="16586"/>
          <exon e_start="16965" e_stop="17272"/>
          <exon e_start="17661" e_stop="17796"/>
          <exon e_start="17882" e_stop="18024"/>
          <exon e_start="18125" e_stop="18248"/>
          <exon e_start="18692" e_stop="19400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAACCATTTGTTTAGGAGTGAGTACTTTGCCCCTACCATCTTAATTTCAACTCTATGATCATCGACACCTTTGGAGTAATAGTGTTTGTTGTTCTGTAACAGGAGGTTCTTATTTCCAGCCTCTTTCTTGGAAACTACGCTTGAAGGTTGCTCTAGGAGCTGCAAAAGGGCTTGCTTTTCTCCACAGTGCTGAGACTAAAGTGATATATCGAGACTTCAAAACCTCGAATATTTTGCTTGATTCGGTATGTGTCCCCTATGAATTAGATCTTTGTGCAATTGCTTGCTTATTACGAACCAGCTAACGTGTGCTTACTTGGTGCTGTTTCTCTTTTATCGTTATAGAACTACACTGCCAAACTCTCAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTGGTATGGTTTCTTTTCCCCCCTGACTCATGTGTTAGTTTTCTCTCTTGTTCCAACGTGGCCCGACATCCATAGAGTATCCAAATTTAGAATATTAGGTACTGATCAGGACATCTTTACGTCTAAGATGGAACATTTTTTCTTATCCAAGATCCATCTAACATGCAGTTTTCTCTTTTCTTTTTAACTCGCATTCTTATTGTCAAGAACCTCATTAGTCATTCACCTATGATGCATTTGTACTGCACTCCATCCCCTGGGCAACAATTAGTTACTGCTCTTTCTGGGATGGACTTTGATATCTTCATGTTGAGTCTTTAATCAGCCGATACAAACTTGTACTCTTGCCGACTTCCCCTGTTGCGTTCAACCGTTGTCATAATTTACTTGTACCTTGAATTATCTATTAATAACTCAACTCCCTTTGATCCATCTGTTTGATACAGGTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACACTAAAGGAATGCATACTACCCTTTCATACTTA</genome_strand>
        <mrna_strand>GAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCA-TTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTG--TTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAATAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTG....................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTTAACTATTTGGGGCAGTTTTTTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAACCATTTGTTTAGGA.....................................................................................GAGGTTCTTATTTCCAGCCTCTTTCTTGGAAACTACGCTTGAAGGTTGCTCTAGGAGCTGCAAAAGGGCTTGCTTTTCTCCACAGTGCTGAGACTAAAGTGATATATCGAGACTTCAAAACCTCGAATATTTTGCTTGATTCG....................................................................................................AACTACACTGCCAAACTCTCAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACACTAAAGGAATGCATACTACCCTTTCATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265487" ref_strand="+" ref_description="SGN-E265487 [cLEI-14-A22]">
      <seq>aaaaccaaaactactgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaagaacaggactcattcattttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttaacttcatatttcagctttgagctacttggatctgttttttttttttttgaatatacaactacatcgtgtgttctggggtctacagaaaaaggagaatctcaaaggggtgattgtgatttttgattgttgttgctctaatggggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15946" stop="16844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16246" g_stop="16544" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E265487" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16246" e_stop="16544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTG-TTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATAT</genome_strand>
        <mrna_strand>AAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAGAACAGGACTCATTCA-TTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTAACTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTTGAATATACAACTACATCGTGTGTTCTGGGGTCTACAGAAAAAGGAGAATCTCAAAGGGGTGATTGTGATTTTTGATTGTTGTTGCTCTAATGGGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729181" ref_strand="+" ref_description="SGN-E729181 [LA20BA03]">
      <seq>ctgacttttcttgaaaaaagaagaggtggggtgctttcttttcttcaaaaaccttctctttgttcttgaaaaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttttggaatatacaattatttggggggtccgggggtttacaaaaaaaggaaaacctaaagggggggatttggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15959" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16259" g_stop="16516" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E729181" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16259" e_stop="16516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTT-GAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTT</genome_strand>
        <mrna_strand>CTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGGAATATACAATTATTTGGGGGGTCCGGGGGTTTACAAAAAAAGGAAAACCTAAAGGGGGGGATTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344457" ref_strand="+" ref_description="SGN-E344457 [cTOF-14-M2]">
      <seq>aaaacaggactcattcatttttttttgtgtgtttctttcagaagaaataacaaagaccctttctctgttttcttcatatttcagctttgagctacttggatctgtttttttttttttgaatatacaagtagtttgtgtgttctggggtctacagaagaaggagaagctaaaaggggtgattttgttttttgtttgttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggtggtgatagtaattcaagctccagggttccatcaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcagaacagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgttcgcagctaccaagcctgggacaggtgtgatcattgctgtgaaaaggcttaatcaagaaggttttcaaggtcacagggaatggctggcagaagttaactatttggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16029" stop="17983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16329" g_stop="16586" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17272" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="566" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17661" g_stop="17683" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="589" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E344457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16329" e_stop="16586"/>
          <exon e_start="16965" e_stop="17272"/>
          <exon e_start="17661" e_stop="17683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCA</genome_strand>
        <mrna_strand>AAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTG....................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTTAACTATTTGGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407729" ref_strand="+" ref_description="SGN-E407729 [PPI-8-G24]">
      <seq>gtttttgagaagaaataacaaataccctttctctgttttcttcatatttcagctgtgagctacttagatctgttatcttctttttttcacaagtggtttgtgtgttctgtgatctacagaagcaggagaagctaaaggggtgatttttttgttttttgtttgttgttctaatggggatatgtttgagtgctagaattaaagctgaaagcccatttcatacagggctaaattcaagatctgttagcatagatggaggtgatagcaattcaagctccagggttccaccaactactagaagtgaaggagagatattgcagtctcccaatttgaagagctttagtttttctgatctcaaaacagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgtttgcagctaccaagcctgggacaggtgtgatcattgctgtgaaaaggctaaatcaagaaggtttacaaggtcacagggaatggctggcggaagttaactatttggggcagttttctcatcctcatcttgtaaagctgattggctactgcttggaggatgaacaccggcttttggtttatgagttcatgcctcggggcagcttggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16061" stop="18082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16361" g_stop="16586" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16965" g_stop="17272" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="530" r_length="308" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17661" g_stop="17782" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="652" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E407729" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16361" e_stop="16586"/>
          <exon e_start="16965" e_stop="17272"/>
          <exon e_start="17661" e_stop="17782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAA</genome_strand>
        <mrna_strand>GTTTTTGAGAAGAAATAACAAATACCCTTTCTCTGTTTTCTTCATATTTCAGCTGTGAGCTACTTAGATCTGTTATCTTCTTTTT---TTCACAAGTGGTTTGTGTGTTCTGTGATCTACAGAAGCAGGAGAAGCT-AAAGGGGTGATTTTTTTGTTTTTTGTTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................GGCTAAATTCAAGATCTGTTAGCATAGATGGAGGTGATAGCAATTCAAGCTCCAGGGTTCCACCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAAAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTTGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTAAATCAAGAAGGTTTACAAGGTCACAGGGAATGGCTG....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGATGAACACCGGCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571934" ref_strand="+" ref_description="SGN-E571934 [31009]">
      <seq>gagatattgcagtctcccaatttgaagagctttagtttttctgatctcaaaacagccactaggaactttcgtcccgatagtgtgctgggagaaggtggatttggatcagtttttaaagggtggatcgatgagaacacgttcgcagctaccaagcctgggacaggtgtgatcattgctgtgaaaaggctaaatcaagaaggttttcaaggtcacagggaatggctggcggaagttaactatttggggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16748" stop="17985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17048" g_stop="17272" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17661" g_stop="17685" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="250" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E571934" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17048" e_stop="17272"/>
          <exon e_start="17661" e_stop="17685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCAGT</genome_strand>
        <mrna_strand>GAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAAAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTAAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTG....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAGTTAACTATTTGGGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537504" ref_strand="+" ref_description="SGN-E537504 [TUS-56-C7](-)">
      <seq>cagactttggattagccaaggatgggccaacaggcgataaaagccatgtctctacaagggttatggggacctatggatatgccgctccagaatacatggctactggtcatttaactagcaagagtgatgtgtatagttttggagttgtcctccttgaaatgctgtcaggtcgtagggcaatcgacaagaatagaccatccggagaacacaatctagtggagtgggcgaaaccttacctaggtaacaaacgtaaggtcttccgtgttctggatacccgtcttgaaggccagtattcaatggaggtggcgagtaaagtagctaaccttgccctgcggtgcctatccaaagatcctcggtttagaccaagcatgagtgacattgttaaagaactggagcaactttatcaacaatctaaagattcaggaaatactcgcagccacgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctaatagaaatccttcagttgcttatccgagaccgtctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttttgtcttatatgtgtttatcaagcttgataagtagttgaggctgatgaagaacctctgcacatttgcagtatcagctggctgattgtacagttgtttttggctaatgtattgaatctatactttctgtaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17844" stop="19604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18144" g_stop="18248" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18249" i_stop="18691" i_length="443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18692" g_stop="19305" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="719" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E537504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18144" e_stop="18248"/>
          <exon e_start="18692" e_stop="19305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTGGTATGGTTTCTTTTCCCCCCTGACTCATGTGTTAGTTTTCTCTCTTGTTCCAACGTGGCCCGACATCCATAGAGTATCCAAATTTAGAATATTAGGTACTGATCAGGACATCTTTACGTCTAAGATGGAACATTTTTTCTTATCCAAGATCCATCTAACATGCAGTTTTCTCTTTTCTTTTTAACTCGCATTCTTATTGTCAAGAACCTCATTAGTCATTCACCTATGATGCATTTGTACTGCACTCCATCCCCTGGGCAACAATTAGTTACTGCTCTTTCTGGGATGGACTTTGATATCTTCATGTTGAGTCTTTAATCAGCCGATACAAACTTGTACTCTTGCCGACTTCCCCTGTTGCGTTCAACCGTTGTCATAATTTACTTGTACCTTGAATTATCTATTAATAACTCAACTCCCTTTGATCCATCTGTTTGATACAGGTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAG</genome_strand>
        <mrna_strand>CAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421279" ref_strand="+" ref_description="SGN-E421279 [STM-32-J3]">
      <seq>tggatatgcagctccagaatacatggccactggtcatttaactagcaagagtgatgtgtatagttttggagttgtcctccttgaaatgctgtcaggtcgtagggcaatcgacaagaatagaccatccggagaacacaatctagtggagtgggcgaaaccttacctaggtaacaaacgcaaggtcttccgtgttctggatacccgtcttgaaggccagtattcaatggacgtggcgagtaaagtagctaaccttgccttgcggtgcctatccaaagatcctcgatttagaccaagcatgagtgacattgttaaagaactggagcaactttatcaacaatctaaagattcaggaaatactcgcagccatgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctagtagaaatccttcagttgcttatccgagaccttctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttgcctttatgttttatcaaagcttgataagtagttgaggctgattaagaacctctgcacatttgcagtatcagctgactgatttgtacagttgtttttggctaatgtattgaatccatactttctgtaggtcctgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17917" stop="19616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18217" g_stop="18248" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18249" i_stop="18691" i_length="443">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18692" g_stop="19316" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="655" r_length="623" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E421279" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18217" e_stop="18248"/>
          <exon e_start="18692" e_stop="19316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATATGCCGCTCCAGAATACATGGCTACTGGTATGGTTTCTTTTCCCCCCTGACTCATGTGTTAGTTTTCTCTCTTGTTCCAACGTGGCCCGACATCCATAGAGTATCCAAATTTAGAATATTAGGTACTGATCAGGACATCTTTACGTCTAAGATGGAACATTTTTTCTTATCCAAGATCCATCTAACATGCAGTTTTCTCTTTTCTTTTTAACTCGCATTCTTATTGTCAAGAACCTCATTAGTCATTCACCTATGATGCATTTGTACTGCACTCCATCCCCTGGGCAACAATTAGTTACTGCTCTTTCTGGGATGGACTTTGATATCTTCATGTTGAGTCTTTAATCAGCCGATACAAACTTGTACTCTTGCCGACTTCCCCTGTTGCGTTCAACCGTTGTCATAATTTACTTGTACCTTGAATTATCTATTAATAACTCAACTCCCTTTGATCCATCTGTTTGATACAGGTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATC-AAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGA-TTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGT</genome_strand>
        <mrna_strand>TGGATATGCAGCTCCAGAATACATGGCCACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGCAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGACGTGGCGAGTAAAGTAGCTAACCTTGCCTTGCGGTGCCTATCCAAAGATCCTCGATTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCATGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAGTAGAAATCCTTCAGTTGCTTATCCGAGACCTTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTG--TTTTTTGCCTT-TATGT-TTTATCAAAGCTTGATAAGTAGTTGAGGCTGATTAAGAACCTCTGCACATTTGCAGTATCAGCTGACTGATTTGTACAGTTGTTTTTGGCTAATGTATTGAATCCATACTTTCTGTAGGTCCTGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421280" ref_strand="-" ref_description="SGN-E421280 [STM-32-J3]">
      <seq>gcaagagtgatgtgtatagttttggagtngtcctcccttgaaatgctgtcaggtcgtagggcaatcgacaagaatagaccatcccgagaacacaatctagtggagtgggcgaacccttacctaggtaacaaacgcaaggtcttccgtgttctggatacccgtcttgaaggccagtattcaatggacgtggcgagtaaagtagctaaccttgccttgcggtgcctatccaaagatcctcgatttagaccaagcatgagtgacattgttaaagaactggagcaactttatcaacaatctaaagattcaggaaatactcgcagccatgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctagtagaaatccttcagttgcttatccgagaccttctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttgcctttatgttttatcaaagcttgataagtagttgaggctgattaagaacctctgcacatttgcagtatcagctgactgattgtacagttgtttttggctaatgtattgaatcaatactttctgtaggtcctgaatgtgtttgtaacttgagttttgctcacaggtcactaaatgttcactttttgacacttaagggaatgcatagtaccctttcattcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18404" stop="19700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18704" g_stop="19400" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="706"/>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E421280" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18704" e_stop="19400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCT-CCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATC-AAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACAC-TAAAGGAATGCATACTACCCTTTCATACTTA</genome_strand>
        <mrna_strand>GCAAGAGTGATGTGTATAGTTTTGGAGTNGTCCTCCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCCGAGAACACAATCTAGTGGAGTGGGCGAACCCTTACCTAGGTAACAAACGCAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGACGTGGCGAGTAAAGTAGCTAACCTTGCCTTGCGGTGCCTATCCAAAGATCCTCGATTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCATGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAGTAGAAATCCTTCAGTTGCTTATCCGAGACCTTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTG--TTTTTTGCCTT-TATGT-TTTATCAAAGCTTGATAAGTAGTTGAGGCTGATTAAGAACCTCTGCACATTTGCAGTATCAGCTGACTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCAATACTTTCTGTAGGTCCTGAATGTGTTTGTAAC-TTGAGTTTTGCTCACAGGTCACTAAATGTTCACTTTTTGACACTTAAGGGAATGCATAGTACCCTTTCATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407580" ref_strand="+" ref_description="SGN-E407580 [PPI-7-F20]">
      <seq>aagagtgatgtgtacagttttggagttgtcctccttgaaatgctgtcaggtcgtagggcaatcgacaagaatagaccatccggagaacacaatctagtggagtgggcgaaaccttacctaggtaacaaacgcaaggtcttccgtgttctggatacccgtcttgaaggccagtattcaatggacgtggcgagtaaagtagctaaccttgccttgcggtgcctatccaaagatcctcgatttagaccaagcatgagtgacattgttaaagaactggagcaactttatcaacaatctaaagattcaggaaatactcgcagccatgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctagtagaaatccttcagttgcttatccgagaccttctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttgcctttatgttttatcaaagcttgataagtagttgaggctgattaagaacctctgcacatttgcagtatcagctgactgattgtacagttgtttttggctaatgtattgaatcaatactttctgtangtcctgaatgtgtttgtaccttgagttttgctcacaggtcactaaatgttcactttttgacacttaanggaatgcatagtaccctttcatacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18406" stop="19700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18706" g_stop="19400" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E407580" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18706" e_stop="19400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATC-AAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACAC-TAAAGGAATGCATACTACCCTTTCATACTTA</genome_strand>
        <mrna_strand>AAGAGTGATGTGTACAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGCAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGACGTGGCGAGTAAAGTAGCTAACCTTGCCTTGCGGTGCCTATCCAAAGATCCTCGATTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCATGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAGTAGAAATCCTTCAGTTGCTTATCCGAGACCTTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTG--TTTTTTGCCTT-TATGT-TTTATCAAAGCTTGATAAGTAGTTGAGGCTGATTAAGAACCTCTGCACATTTGCAGTATCAGCTGACTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCAATACTTTCTGTANGTCCTGAATGTGTTTGT-ACCTTGAGTTTTGCTCACAGGTCACTAAATGTTCACTTTTTGACACTTAANGGAATGCATAGTACCCTTTCATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611377" ref_strand="+" ref_description="SGN-E611377 [61128]">
      <seq>tcaatctaaagattcaggaaatactcgcagccatgctagcaaccgacctagaccacgtagacgaagtgctggtgatgttgctagtagaaatccttcagttgcttatccaagaccttctgcttctcccctttacgctaaataattaaacaactgattgaaagatgccttaatttcttgttttttgcctttatgttttatcaaagcttgataagtagttgaggctgatgaagaacctctgcacatttgcagtatcagctgactgattgtacagttgtttttggctaatgtattgaatcaatactttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18694" stop="19604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="19313" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E611377" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="19313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATC-AAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAA</genome_strand>
        <mrna_strand>TCAATCTAAAGATTCAGGAAATACTCGCAGCCATGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAGTAGAAATCCTTCAGTTGCTTATCCAAGACCTTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAACTGATTGAAAGATGCCTTAATTTCTTG--TTTTTTGCCTT-TATGT-TTTATCAAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGACTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCAATACTTTCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614615" ref_strand="+" ref_description="SGN-E614615 [64404]">
      <seq>atctgcttctcccctttacgctaaataattaaacaaatgattgaaagatgccttaatttcttgttttttgcctttatgttttatcaaagcttgataggtagttgaggctgatgaagaacctctgcacatttgcagtatcagctgactgattgtacagttgtttttggctaatgtattgaatcaatactttctgtaggtcctgaatgtgtttgtaacttgagttttgctcacaggtcactaaatgttcacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18808" stop="19664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19107" g_stop="19364" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E614615" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19107" e_stop="19364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAA-GCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTT</genome_strand>
        <mrna_strand>ATCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTG--TTTTTTGCCTT-TATGT-TTTATCAAAGCTTGATAGGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGACTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCAATACTTTCTGTAGGTCCTGAATGTGTTTGTAAC-TTGAGTTTTGCTCACAGGTCACTAAATGTTCACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23705" stop="22803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23405" g_stop="23103" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23405" e_stop="23103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGTGGTTCGGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGTTACTGTCGCACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCTCTAGCTGGGGCCTCAATAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24552" stop="23524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24252" g_stop="23824" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24252" e_stop="23824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCTTCTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGTCCCCTCCCTAGATGTCCGAAATACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACGAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAGT-CCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352040" ref_strand="+" ref_description="SGN-E352040 [cTOS-13-B19]">
      <seq>ggtggtacctctaccccaactttgctgagctccaacaccactactagaaactctatcaccctacctgactgtactctgcaacgacctctaccctgtagagctagtggtctagtatggaatgaagaattaggtcgaggcccaccacgacccctttaagaagtacactgccgcattagatgatcgggatctccacaagtaaaacaaaatctctaacctgggaactgctgtgtggaccctgaaaacccacaataattgcctcgccctgaaggtcgctgctgtgaaccgtacgagccctgaaccaggacataagaacccctagatgtttggccaccctcaaatattgtcttagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaatcaccatgaaactgacttgatatacgggcccttatagggtccccaaactcctccctctcttcatcaattccaactctttggaggcgctcataatggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="-" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24830" stop="23754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24530" g_stop="24014" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="-" ref_id="SGN-E352040" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24530" e_stop="24014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTACCTCTACCCCCACTCTGCTGAGCTGCAACACCACTACTGGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTTGGTCGAGGCCCACCACGACCCCTTTGAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAACCCACTATAATTTCCTCGCCCTGTAGGTCGCTGTTGTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACT-CT-TCTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCACAATGGACTGG</genome_strand>
        <mrna_strand>GGTGGTACCTCTACCCCAACTTTGCTGAGCTCCAACACCACTACTAGAAACTCTATCACC-CTACCTGACTGTACTCTGCAACGACCTCTACCCTGTAGAGCTAGTGGTCTAGTATGGAATGAAGAATTAGGTCGAGGCCCACCACGACCCCTTTAAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTAACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACAATAATTGCCTCGCCCTGAAGGTCGCTGCTGTGAACCGTACGAGCCCTGAACCAGGACATAAGAACCCCTAGATGTTTGGCCACCCTCAAATATTGTCTTAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAATCACCATGAAACTGACTTGATATACGGGCCCTTATAGGGTCCCCAAACTCCTCCCTCTCTTCATCAATTCCAACTCTTTGGAGGCGCTCATAATGGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26083" stop="27270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26383" g_stop="26970" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26383" e_stop="26970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGAAAGGCCAATGTTATGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGCACTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGAGGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAATTTGATGACGAAAAATTATGTCTCATTCGAGACAGAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTACTCGGTATTCCATCCATCCGGGAGCGGCAAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAATGTGAGCACCAGCGGCCAGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439930" ref_strand="+" ref_description="SGN-E439930 [cSTA-14-M1]">
      <seq>tttgcattgtatctgagacatggttgtggtaagaggatgatgtactattttcgagagtcgtatcgcgcgccgcgatggatattatatttcgagggacgtatcgcgcgccgcgaaggttactattttatcgagggtcgtgtcgtgcaccgcgacagatgcatggatacatatgtcccccatgggtcccagactgagagacagcgggtgtgtatcgttaagaaagacatgcatcacgatatttgacattgcatctcatggcattgcacatttttattattgatgaacttgaacatgtgtttttgctgatcttgtgattgtttctctgtgaagcttgtgactgttgaatattgagttgttattgagaatgtgtaaactgatagagcgtggttattgattggtgttcttggtaaactgttaggctgtagcgtggaggtttagatagggcgtaaggagtacccgtattcttttcacttaacttgtgtttagaggtttgcttgttgggtaccgcgtggtttggtactcaccccttgcttttataattttttgtaggttacgagcccgaatttttgtgatatcttccattctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0016K14-IdFdc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0016K14.2" temp_strand="+" temp_description="C06HBa0016K14.2  AC211023.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0016K14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28872" stop="30058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29172" g_stop="29758" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0016K14.2" gen_strand="+" ref_id="SGN-E439930" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0016K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29172" e_stop="29758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATTGTATCTGAGACATTGTTGTGGTAAGAGGATGGTGTACTATTTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTA-CTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGAACTGAGAGACAGCGGGTGTGTATCGTTAGGAAAGACATGCATCACGATATTTGACATTGCATCTCATGACATTGCACA-TCTTATTATTGATGAACTTGAACATGTG-TTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGTCTGTGATTGTTGAATATTGAGTTGATATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGTGTAAGGAGTACCCGTATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCTGGATCTTTGTGATACATTCTATTCTCTTCG</genome_strand>
        <mrna_strand>TTTGCATTGTATCTGAGACATGGTTGTGGTAAGAGGATGATGTACTATTTTCGAGAGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTATTTTATCGAGGGTCGTGTCGTGCACCGCGACAGATGCATGGATACATATGTCCCCCATGGGTCCCAGACTGAGAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGCATTGCACATTTTTATTATTGATGAACTTGAACATGTGTTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGCGTGGTTATTGATTGGTGTTCTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGTATTCTTTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTTTATAATTTTTTGTAGGTTACGAGCCCGAATTTTTGTGATATCTTCCATTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>30</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4212" PGL_stop="4799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4212" e_stop="4799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="4212" e_stop="4799" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4212" stop="4799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGAAAGGCCAATGTTATGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGCACTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGAGGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAATTTGATGACGAAAAATTATGTCTCATTCGAGACAGAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTACTCGGTATTCCATCCATCCGGGAGCGGCAAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAATGTGAGCACCAGCGGCCAGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  E  R  P  M  L  W  P  M  L  *  V  G  R  L  L  A  W  G  V  L  Q  H  L  V  L  W  R  D  H  W  L  E  M  C  R  Y  *  L  T  V  L  S  A  C  R  F  Q  K  R  V  R  G  *  L  L  L  L  R  L  G  L  L  *  S  S  K  F  V  H  T  N  L  M  T  K  N  Y  V  S  F  E  T  E  Y  *  E  G  K  L  R  R  L  S  L  I  L  M  V  S  C  G  S  E  A  E  F  V  C  P  G  Q  A  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  R  E  R  Q  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  F  Q  T  L  F  L  G  V  *  L  A  S  R  S  N  V  S  T  S  G  Q  G  V  Y  L  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  R  K  G  Q  C  Y  G  R  C  S  E  *  E  D  S  *  H  G  E  S  C  S  T  *  Y  Y  G  E  T  I  G  *  R  C  A  D  I  S  *  Q  S  C  P  L  A  D  F  R  R  E  *  G  D  D  C  F  Y  *  G  S  V  F  F  S  R  A  N  S  C  T  P  I  *  *  R  K  I  M  S  H  S  R  Q  S  I  E  R  G  S  *  G  G  C  P  *  F  *  W  C  L  A  D  R  R  Q  N  L  C  A  Q  D  R  R  F  D  *  I  D  S  *  G  G  P  L  Y  S  V  F  H  P  S  G  S  G  K  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  F  R  L  C  F  *  V  F  D  L  P  A  G  Q  M  *  A  P  A  A  R  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  M  A  D  A  L  S  R  K  T  P  S  M  G  S  L  A  A  L  S  I  M  E  R  P  L  A  R  D  V  Q  I  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  E  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  R  V  L  R  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  R  T  G  D  L  I  R  L  I  L  E  E  A  H  C  T  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  S  D  F  V  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4214" stop="4798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVMADALSRKTPSMGSLAALSIMERPLARDVQILANSLVRLQISEESEGMIAFIEARSSLVEQIRAHQFDDEKLCLIRDRVLRGEAKEAVLDSDGVLRIGGRICVPRTGDLIRLILEEAHCTRYSIHPGAAKMYHDLSQHYWWCGMKRDISDFVSRCLTCQQVKCEHQRPGGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7001" PGL_stop="7587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7001" e_stop="7587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="7001" e_stop="7587" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7001" stop="7587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCATTGTATCTGAGACATTGTTGTGGTAAGAGGATGGTGTACTATTTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCACGCGCCGCGAAGGTTACTACTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGAACTGAGAGACAGCGGGTGTGTATCGTTAGGAAAGACATGCATCACGATATTTGACATTGCATCTCATGACATTGCACATCTTATTATTGATGAACTTGAACATGTGTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGTCTGTGATTGTTGAATATTGAGTTGATATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGTGTAAGGAGTACCCGTATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCTGGATCTTTGTGATACCTTCTATTCTCTTCG</gDNA_template>
            <first_frame> F  A  L  Y  L  R  H  C  C  G  K  R  M  V  Y  Y  F  R  G  S  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  T  R  R  E  G  Y  Y  L  S  R  V  V  S  C  A  A  T  D  A  W  T  D  M  S  P  M  G  P  E  L  R  D  S  G  C  V  S  L  G  K  T  C  I  T  I  F  D  I  A  S  H  D  I  A  H  L  I  I  D  E  L  E  H  V  F  C  *  S  C  D  C  F  S  V  K  S  V  I  V  E  Y  *  V  D  I  E  N  V  *  T  D  R  V  W  L  L  S  G  V  F  G  K  L  L  G  C  S  V  E  V  *  I  G  C  K  E  Y  P  Y  F  V  H  L  T  C  V  *  R  F  A  C  W  V  P  R  G  L  V  L  T  P  C  F  Y  K  F  L  *  V  T  S  L  D  L  C  D  T  F  Y  S  L   </first_frame>
            <second_frame>  L  H  C  I  *  D  I  V  V  V  R  G  W  C  T  I  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  K  V  T  T  Y  R  G  S  C  R  A  P  R  Q  M  H  G  Q  I  C  P  P  W  V  P  N  *  E  T  A  G  V  Y  R  *  E  R  H  A  S  R  Y  L  T  L  H  L  M  T  L  H  I  L  L  L  M  N  L  N  M  C  F  A  D  L  V  I  V  S  L  *  S  L  *  L  L  N  I  E  L  I  L  R  M  C  K  L  I  E  C  G  Y  *  V  V  C  L  V  N  C  *  A  V  A  W  R  F  R  *  G  V  R  S  T  R  I  L  F  T  *  L  V  F  R  G  L  L  V  G  Y  R  V  V  W  Y  S  P  L  A  S  T  N  F  C  R  L  R  A  W  I  F  V  I  P  S  I  L  F  </second_frame>
            <third_frame>   C  I  V  S  E  T  L  L  W  *  E  D  G  V  L  F  S  R  V  V  S  R  A  A  M  D  I  I  F  R  G  T  Y  H  A  P  R  R  L  L  L  I  E  G  R  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  C  I  V  R  K  D  M  H  H  D  I  *  H  C  I  S  *  H  C  T  S  Y  Y  *  *  T  *  T  C  V  L  L  I  L  *  L  F  L  C  E  V  C  D  C  *  I  L  S  *  Y  *  E  C  V  N  *  *  S  V  V  I  E  W  C  V  W  *  T  V  R  L  *  R  G  G  L  D  R  V  *  G  V  P  V  F  C  S  L  N  L  C  L  E  V  C  L  L  G  T  A  W  F  G  T  H  P  L  L  L  Q  I  F  V  G  Y  E  P  G  S  L  *  Y  L  L  F  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7001" stop="7303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FALYLRHCCGKRMVYYFRGSYRAPRWILYFEGRITRREGYYLSRVVSCAATDAWTDMSPMGPELRDSGCVSLGKTCITIFDIASHDIAHLIIDELEHVFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14262" PGL_stop="13168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14133" e_stop="13168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="14133" e_stop="13168" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="13432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14097" stop="13206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14018" stop="13277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13618" stop="13168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAGAAGCATGCTTCCTGAGTACCCTTCATCTTCAGCGGGCCCTCTGTACAGGCACCCTCATCGACGTGAACATCGTTTTTAGGTTTACAAAAAGGTAACCATCACATGTGGTTCTGGTAATCAGAATCATGCACAGCTTAAAACTTGAGACTATCTAGAATGTTTTCAGAATCCATTGGGGTTTCTGTTTTATTTTGTTTAAACTATATTAGATATTACTTCTCCATTCTTGCTGTAAGCAAGAGATTTATGATTTGATCGAAC</gDNA_template>
            <first_frame> Q  T  R  Q  S  *  E  A  W  S  G  *  K  *  T  S  *  S  R  S  T  I  *  A  G  *  R  S  S  V  P  R  A  G  *  R  S  S  V  P  R  A  G  *  R  S  L  V  P  R  A  G  *  R  S  S  V  P  *  A  G  *  R  S  W  V  P  *  T  S  S  F  A  W  K  G  L  E  Y  I  Y  F  D  S  I  S  P  S  S  T  F  T  T  T  C  S  I  L  C  I  *  Q  D  F  G  K  R  S  L  W  T  G  H  S  D  T  A  *  *  F  L  Q  A  E  A  I  G  G  T  S  *  S  L  *  A  G  H  C  D  R  Q  S  G  C  S  Q  R  T  S  I  V  R  V  T  *  S  L  Q  T  G  G  N  F  R  A  S  *  V  S  S  A  S  E  F  G  N  *  T  P  G  C  W  W  D  *  *  F  I  C  A  I  P  *  A  A  I  I  P  *  S  S  C  *  L  S  A  L  P  A  R  V  *  P  P  S  S  W  F  A  I  R  I  P  P  W  W  Y  I  Y  C  V  Q  F  C  Q  K  H  A  S  *  V  P  F  I  F  S  G  P  S  V  Q  A  P  S  S  T  *  T  S  F  L  G  L  Q  K  G  N  H  H  M  W  F  W  *  S  E  S  C  T  A  *  N  L  R  L  S  R  M  F  S  E  S  I  G  V  S  V  L  F  C  L  N  Y  I  R  Y  Y  F  S  I  L  A  V  S  K  R  F  M  I  *  S  N </first_frame>
            <second_frame>  K  R  D  R  A  K  R  H  G  L  D  E  S  R  R  P  D  R  A  R  Q  F  E  Q  V  E  D  R  R  Y  R  E  Q  A  E  D  R  R  Y  R  E  Q  A  E  D  R  W  Y  R  E  Q  A  E  D  R  L  Y  R  E  Q  V  E  D  R  G  Y  R  E  H  P  H  L  H  G  R  G  L  N  T  S  T  L  I  P  L  A  P  L  R  P  L  P  P  L  V  Q  S  Y  A  Y  D  R  T  L  G  R  D  P  Y  G  R  D  T  V  I  P  H  N  D  S  Y  R  Q  R  R  L  V  E  L  A  D  P  Y  R  R  D  T  V  I  G  N  P  D  V  H  R  G  R  A  L  L  E  S  H  D  H  Y  R  R  E  G  I  S  E  P  R  E  Y  R  Q  P  L  N  L  E  T  R  L  Q  V  A  G  G  I  N  D  S  Y  V  P  Y  R  E  R  L  S  Y  H  D  L  P  V  N  S  V  R  S  Q  P  E  F  N  P  P  P  A  G  L  R  S  E  Y  L  H  G  G  T  S  T  V  F  S  S  A  R  S  M  L  P  E  Y  P  S  S  S  A  G  P  L  Y  R  H  P  H  R  R  E  H  R  F  *  V  Y  K  K  V  T  I  T  C  G  S  G  N  Q  N  H  A  Q  L  K  T  *  D  Y  L  E  C  F  Q  N  P  L  G  F  L  F  Y  F  V  *  T  I  L  D  I  T  S  P  F  L  L  *  A  R  D  L  *  F  D  R   </second_frame>
            <third_frame>   N  E  T  E  L  R  G  M  V  W  M  K  V  D  V  L  I  A  L  D  N  L  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  C  T  V  S  R  L  K  I  V  G  T  V  N  I  L  I  C  M  E  G  A  *  I  H  L  L  *  F  H  *  P  L  F  D  L  Y  H  H  L  F  N  L  M  H  M  T  G  L  W  E  E  I  L  M  D  G  T  Q  *  Y  R  I  M  I  L  T  G  R  G  D  W  W  N  *  L  I  L  I  G  G  T  L  *  *  A  I  R  M  F  T  E  D  E  H  C  *  S  H  M  I  T  T  D  G  R  E  F  Q  S  L  V  S  I  V  S  L  *  I  W  K  L  D  S  R  L  L  V  G  L  M  I  H  M  C  H  T  V  S  G  Y  H  T  M  I  F  L  L  T  Q  C  A  P  S  P  S  L  T  P  L  Q  L  V  C  D  Q  N  T  S  M  V  V  H  L  L  C  S  V  L  P  E  A  C  F  L  S  T  L  H  L  Q  R  A  L  C  T  G  T  L  I  D  V  N  I  V  F  R  F  T  K  R  *  P  S  H  V  V  L  V  I  R  I  M  H  S  L  K  L  E  T  I  *  N  V  F  R  I  H  W  G  F  C  F  I  L  F  K  L  Y  *  I  L  L  L  H  S  C  C  K  Q  E  I  Y  D  L  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14132" stop="13350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDRAKRHGLDESRRPDRARQFEQVEDRRYREQAEDRRYREQAEDRWYREQAEDRLYREQVEDRGYREHPHLHGRGLNTSTLIPLAPLRPLPPLVQSYAYDRTLGRDPYGRDTVIPHNDSYRQRRLVELADPYRRDTVIGNPDVHRGRALLESHDHYRREGISEPREYRQPLNLETRLQVAGGINDSYVPYRERLSYHDLPVNSVRSQPEFNPPPAGLRSEYLHGGTSTVFSSARSMLPEYPSSSAGPLYRHPHRREHRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14262" e_stop="13429"/>
            <exon e_start="13307" e_stop="13276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.188" e_score="0.990"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14262" e_stop="13429" e_length="834"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.188">
            <gDNA_intron_boundary i_start="13428" i_stop="13308" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="13307" e_stop="13276" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="13429"/>
              <exon start="13307" stop="13276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="13432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTTTCAAGACTGCGGTCAAAGGGTCCAGGTCCAATGAGACACAGCTCAGACTTGAGACCAATGTGGTACCCAAACGAGACAGAGCTAAGAGGCATGGTCTGGATGAAAGTAGACGTCCTGATCGCGCTCGACAATTTGAGCAGGTTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTCGGTACCGCGAGCAGGCTGAAGATCGTTGGTACCGCGAGCAGGCTGAAGATCGTCTGTACCGTGAGCAGGTTGAAGATCGTGGGTACCGTGAACATCCTCATTTGCATGGAAGGGGCTTGAATACATCTACTTTGATTCCATTAGCCCCTCTTCGACCTTTACCACCACTTGTTCAATCTTATGCATATGACAGGACTTTGGGAAGAGATCCTTATGGACGGGACACAGTGATACCGCATAATGATTCTTACAGGCAGAGGCGATTGGTGGAACTAGCTGATCCTTATAGGCGGGACACTGTGATAGGCAATCCGGATGTTCACAGAGGACGAGCATTGTTAGAGTCACATGATCACTACAGACGGGAGGGAATTTCAGAGCCTCGTGAGTATCGTCAGCCTCTGAATTTGGAAACTAGACTCCAGGTTGCTGGTGGGATTAATGATTCATATGTGCCATACCGTGAGCGGCTATCATACCATGATCTTCCTGTTAACTCAGTGCGCTCCCAGCCCGAGTTTAACCCCCCTCCAGCTGGTTTGCGATCAGAATACCTCCATGGTGGTACATCTACTGTGTTCAGTTCTGCCAG : AATCATGCACAGCTTAAAACTTGAGACTATCT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  A  F  Q  D  C  G  Q  R  V  Q  V  Q  *  D  T  A  Q  T  *  D  Q  C  G  T  Q  T  R  Q  S  *  E  A  W  S  G  *  K  *  T  S  *  S  R  S  T  I  *  A  G  *  R  S  S  V  P  R  A  G  *  R  S  S  V  P  R  A  G  *  R  S  L  V  P  R  A  G  *  R  S  S  V  P  *  A  G  *  R  S  W  V  P  *  T  S  S  F  A  W  K  G  L  E  Y  I  Y  F  D  S  I  S  P  S  S  T  F  T  T  T  C  S  I  L  C  I  *  Q  D  F  G  K  R  S  L  W  T  G  H  S  D  T  A  *  *  F  L  Q  A  E  A  I  G  G  T  S  *  S  L  *  A  G  H  C  D  R  Q  S  G  C  S  Q  R  T  S  I  V  R  V  T  *  S  L  Q  T  G  G  N  F  R  A  S  *  V  S  S  A  S  E  F  G  N  *  T  P  G  C  W  W  D  *  *  F  I  C  A  I  P  *  A  A  I  I  P  *  S  S  C  *  L  S  A  L  P  A  R  V  *  P  P  S  S  W  F  A  I  R  I  P  P  W  W  Y  I  Y  C  V  Q  F  C  Q  :  N  H  A  Q  L  K  T  *  D  Y   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  L  F  K  T  A  V  K  G  S  R  S  N  E  T  Q  L  R  L  E  T  N  V  V  P  K  R  D  R  A  K  R  H  G  L  D  E  S  R  R  P  D  R  A  R  Q  F  E  Q  V  E  D  R  R  Y  R  E  Q  A  E  D  R  R  Y  R  E  Q  A  E  D  R  W  Y  R  E  Q  A  E  D  R  L  Y  R  E  Q  V  E  D  R  G  Y  R  E  H  P  H  L  H  G  R  G  L  N  T  S  T  L  I  P  L  A  P  L  R  P  L  P  P  L  V  Q  S  Y  A  Y  D  R  T  L  G  R  D  P  Y  G  R  D  T  V  I  P  H  N  D  S  Y  R  Q  R  R  L  V  E  L  A  D  P  Y  R  R  D  T  V  I  G  N  P  D  V  H  R  G  R  A  L  L  E  S  H  D  H  Y  R  R  E  G  I  S  E  P  R  E  Y  R  Q  P  L  N  L  E  T  R  L  Q  V  A  G  G  I  N  D  S  Y  V  P  Y  R  E  R  L  S  Y  H  D  L  P  V  N  S  V  R  S  Q  P  E  F  N  P  P  P  A  G  L  R  S  E  Y  L  H  G  G  T  S  T  V  F  S  S  A  R :   I  M  H  S  L  K  L  E  T  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  F  S  R  L  R  S  K  G  P  G  P  M  R  H  S  S  D  L  R  P  M  W  Y  P  N  E  T  E  L  R  G  M  V  W  M  K  V  D  V  L  I  A  L  D  N  L  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  G  T  A  S  R  L  K  I  V  C  T  V  S  R  L  K  I  V  G  T  V  N  I  L  I  C  M  E  G  A  *  I  H  L  L  *  F  H  *  P  L  F  D  L  Y  H  H  L  F  N  L  M  H  M  T  G  L  W  E  E  I  L  M  D  G  T  Q  *  Y  R  I  M  I  L  T  G  R  G  D  W  W  N  *  L  I  L  I  G  G  T  L  *  *  A  I  R  M  F  T  E  D  E  H  C  *  S  H  M  I  T  T  D  G  R  E  F  Q  S  L  V  S  I  V  S  L  *  I  W  K  L  D  S  R  L  L  V  G  L  M  I  H  M  C  H  T  V  S  G  Y  H  T  M  I  F  L  L  T  Q  C  A  P  S  P  S  L  T  P  L  Q  L  V  C  D  Q  N  T  S  M  V  V  H  L  L  C  S  V  L  P   : E  S  C  T  A  *  N  L  R  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14261" stop="13429"/>
                    <exon start="13307" stop="13277"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFKLFKTAVKGSRSNETQLRLETNVVPKRDRAKRHGLDESRRPDRARQFEQVEDRRYREQAEDRRYREQAEDRWYREQAEDRLYREQVEDRGYREHPHLHGRGLNTSTLIPLAPLRPLPPLVQSYAYDRTLGRDPYGRDTVIPHNDSYRQRRLVELADPYRRDTVIGNPDVHRGRALLESHDHYRREGISEPREYRQPLNLETRLQVAGGINDSYVPYRERLSYHDLPVNSVRSQPEFNPPPAGLRSEYLHGGTSTVFSSARIMHSLKLETI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16115" PGL_stop="19400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16115" e_stop="16586"/>
            <exon e_start="16965" e_stop="17272"/>
            <exon e_start="17661" e_stop="17796"/>
            <exon e_start="17882" e_stop="18024"/>
            <exon e_start="18125" e_stop="18248"/>
            <exon e_start="18692" e_stop="19400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.996"/>
          <exon-intron don_prob="0.944" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.967" e_score="0.993"/>
          <exon-intron don_prob="0.846" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16115" e_stop="16586" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="16587" i_stop="16964" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16965" e_stop="17272" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.981">
            <gDNA_intron_boundary i_start="17273" i_stop="17660" i_length="388"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="17661" e_stop="17796" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.967">
            <gDNA_intron_boundary i_start="17797" i_stop="17881" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17882" e_stop="18024" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.846" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18025" i_stop="18124" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18125" e_stop="18248" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.969">
            <gDNA_intron_boundary i_start="18249" i_stop="18691" i_length="443"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="18692" e_stop="19400" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16115" stop="16586"/>
              <exon start="16965" stop="17206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16115" stop="16586"/>
              <exon start="16965" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16180" stop="16586"/>
              <exon start="16965" stop="17121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16181" stop="16586"/>
              <exon start="16965" stop="17072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16229" stop="16586"/>
              <exon start="16965" stop="17272"/>
              <exon start="17661" stop="17726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16243" stop="16586"/>
              <exon start="16965" stop="17239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16245" stop="16586"/>
              <exon start="16965" stop="17272"/>
              <exon start="17661" stop="17796"/>
              <exon start="17882" stop="18024"/>
              <exon start="18125" stop="18248"/>
              <exon start="18692" stop="19400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16246" stop="16544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16259" stop="16516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16329" stop="16586"/>
              <exon start="16965" stop="17272"/>
              <exon start="17661" stop="17683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16361" stop="16586"/>
              <exon start="16965" stop="17272"/>
              <exon start="17661" stop="17782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17048" stop="17272"/>
              <exon start="17661" stop="17685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18144" stop="18248"/>
              <exon start="18692" stop="19305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18217" stop="18248"/>
              <exon start="18692" stop="19316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18704" stop="19400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18706" stop="19400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="19313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19107" stop="19364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTCACTACCCTACATTTAACATTTTCCTATAACCACTGCTTTAGATAAGTCAAATTTAGCTCTTTGTTTTGATCTCTGTTTCAAAAGAAAACACCTATTAAGCAGCCATCATCTTTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAG : GGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTG : GCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAACCATTTGTTTAGGA : GAGGTTCTTATTTCCAGCCTCTTTCTTGGAAACTACGCTTGAAGGTTGCTCTAGGAGCTGCAAAAGGGCTTGCTTTTCTCCACAGTGCTGAGACTAAAGTGATATATCGAGACTTCAAAACCTCGAATATTTTGCTTGATTCG : AACTACACTGCCAAACTCTCAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTG : GTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACACTAAAGGAATGCATACTACCCTTTCATACTTA</gDNA_template>
            <first_frame> S  F  T  T  L  H  L  T  F  S  Y  N  H  C  F  R  *  V  K  F  S  S  L  F  *  S  L  F  Q  K  K  T  P  I  K  Q  P  S  S  F  L  S  F  P  K  P  K  L  L  T  F  L  E  K  R  R  G  G  V  L  S  F  L  Q  K  P  S  L  C  S  *  K  N  R  T  H  S  F  F  F  V  C  F  F  Q  K  K  *  Q  R  P  F  L  C  F  L  H  I  S  A  L  S  Y  L  D  L  F  F  F  F  *  I  Y  K  *  F  V  C  S  G  V  Y  R  R  R  R  S  *  K  G  *  F  C  F  L  F  V  V  V  L  M  G  I  C  L  S  A  R  I  K  A  E  S  P  F  H  T   : G  L  N  S  R  S  V  S  I  D  G  G  D  S  N  S  S  S  R  V  P  S  T  T  R  S  E  G  E  I  L  Q  S  P  N  L  K  S  F  S  F  S  D  L  R  T  A  T  R  N  F  R  P  D  S  V  L  G  E  G  G  F  G  S  V  F  K  G  W  I  D  E  N  T  F  A  A  T  K  P  G  T  G  V  I  I  A  V  K  R  L  N  Q  E  G  F  Q  G  H  R  E  W  L  :  A  E  V  N  Y  L  G  Q  F  S  H  P  H  L  V  K  L  I  G  Y  C  L  E  D  E  H  R  L  L  V  Y  E  F  M  P  R  G  S  L  E  N  H  L  F  R   : R  G  S  Y  F  Q  P  L  S  W  K  L  R  L  K  V  A  L  G  A  A  K  G  L  A  F  L  H  S  A  E  T  K  V  I  Y  R  D  F  K  T  S  N  I  L  L  D  S  :  N  Y  T  A  K  L  S  D  F  G  L  A  K  D  G  P  T  G  D  K  S  H  V  S  T  R  V  M  G  T  Y  G  Y  A  A  P  E  Y  M  A  T   : G  H  L  T  S  K  S  D  V  Y  S  F  G  V  V  L  L  E  M  L  S  G  R  R  A  I  D  K  N  R  P  S  G  E  H  N  L  V  E  W  A  K  P  Y  L  G  N  K  R  K  V  F  R  V  L  D  T  R  L  E  G  Q  Y  S  M  E  V  A  S  K  V  A  N  L  A  L  R  C  L  S  K  D  P  R  F  R  P  S  M  S  D  I  V  K  E  L  E  Q  L  Y  Q  Q  S  K  D  S  G  N  T  R  S  H  A  S  N  R  P  R  P  R  R  R  S  A  G  D  V  A  N  R  N  P  S  V  A  Y  P  R  P  S  A  S  P  L  Y  A  K  *  L  N  K  *  L  K  D  A  L  I  S  C  F  F  C  L  I  C  V  Y  Q  A  *  *  V  V  E  A  D  E  E  P  L  H  I  C  S  I  S  W  L  I  V  Q  L  F  L  A  N  V  L  N  L  Y  F  L  *  V  L  N  V  F  V  T  L  S  F  A  H  S  S  L  Y  V  H  F  L  T  L  K  E  C  I  L  P  F  H  T   </first_frame>
            <second_frame>  L  S  L  P  Y  I  *  H  F  P  I  T  T  A  L  D  K  S  N  L  A  L  C  F  D  L  C  F  K  R  K  H  L  L  S  S  H  H  L  S  Y  L  F  Q  N  Q  N  Y  *  L  F  L  K  K  E  E  V  G  C  F  L  F  F  K  N  L  L  F  V  L  E  K  T  G  L  I  H  F  F  L  C  V  S  F  R  R  N  N  K  D  P  F  S  V  F  F  I  F  Q  L  *  A  T  W  I  C  F  F  F  F  E  Y  T  S  S  L  C  V  L  G  S  T  E  E  G  E  A  K  R  G  D  F  V  F  C  L  L  L  F  *  W  G  Y  V  *  V  L  E  L  K  L  K  A  H  F  I  Q  :  G  *  I  Q  D  L  L  A  *  M  V  V  I  V  I  Q  A  P  G  F  H  Q  L  L  E  V  K  E  R  Y  C  S  L  P  I  *  R  A  L  V  F  L  I  S  E  Q  P  L  G  T  F  V  P  I  V  C  W  E  K  V  D  L  D  Q  F  L  K  G  G  S  M  R  T  R  S  Q  L  P  S  L  G  Q  V  *  S  L  L  *  K  G  L  I  K  K  V  F  K  V  T  G  N  G  W :   Q  K  L  T  I  W  G  S  F  L  I  L  I  L  *  S  *  L  A  T  A  W  R  T  N  I  V  F  W  F  M  S  S  C  L  G  A  A  W  K  T  I  C  L  G  :  E  V  L  I  S  S  L  F  L  G  N  Y  A  *  R  L  L  *  E  L  Q  K  G  L  L  F  S  T  V  L  R  L  K  *  Y  I  E  T  S  K  P  R  I  F  C  L  I  R :   T  T  L  P  N  S  Q  T  L  D  *  P  R  M  G  Q  Q  A  I  K  A  M  S  L  Q  G  L  W  G  P  M  D  M  P  L  Q  N  T  W  L  L  :  V  I  *  L  A  R  V  M  C  I  V  L  E  L  S  S  L  K  C  C  Q  V  V  G  Q  S  T  R  I  D  H  P  E  N  T  I  *  W  S  G  R  N  L  T  *  V  T  N  V  R  S  S  V  F  W  I  P  V  L  K  A  S  I  Q  W  R  W  R  V  K  *  L  T  L  P  C  G  A  Y  P  K  I  L  G  L  D  Q  A  *  V  T  L  L  K  N  W  S  N  F  I  N  N  L  K  I  Q  E  I  L  A  A  T  L  A  T  D  L  D  H  V  D  E  V  L  V  M  L  L  I  E  I  L  Q  L  L  I  R  D  R  L  L  L  P  F  T  L  N  N  *  T  N  D  *  K  M  P  *  F  L  V  F  F  V  L  Y  V  F  I  K  L  D  K  *  L  R  L  M  K  N  L  C  T  F  A  V  S  A  G  *  L  Y  S  C  F  W  L  M  Y  *  I  Y  T  F  C  R  S  *  M  C  L  *  L  *  V  L  L  T  A  H  Y  M  F  T  F  *  H  *  R  N  A  Y  Y  P  F  I  L  </second_frame>
            <third_frame>   F  H  Y  P  T  F  N  I  F  L  *  P  L  L  *  I  S  Q  I  *  L  F  V  L  I  S  V  S  K  E  N  T  Y  *  A  A  I  I  F  L  I  F  S  K  T  K  T  T  D  F  S  *  K  K  K  R  W  G  A  F  F  S  S  K  T  F  S  L  F  L  K  K  Q  D  S  F  I  F  F  C  V  F  L  S  E  E  I  T  K  T  L  S  L  F  S  S  Y  F  S  F  E  L  L  G  S  V  F  F  F  L  N  I  Q  V  V  C  V  F  W  G  L  Q  K  K  E  K  L  K  G  V  I  L  F  F  V  C  C  C  S  N  G  D  M  F  E  C  *  N  *  S  *  K  P  I  S  Y  R :   A  K  F  K  I  C  *  H  R  W  W  *  *  *  F  K  L  Q  G  S  I  N  Y  *  K  *  R  R  D  I  A  V  S  Q  F  E  E  L  *  F  F  *  S  Q  N  S  H  *  E  L  S  S  R  *  C  A  G  R  R  W  I  W  I  S  F  *  R  V  D  R  *  E  H  V  R  S  Y  Q  A  W  D  R  C  D  H  C  C  E  K  A  *  S  R  R  F  S  R  S  Q  G  M  A   : G  R  S  *  L  F  G  A  V  F  S  S  S  S  C  K  A  D  W  L  L  L  G  G  R  T  S  S  F  G  L  *  V  H  A  S  G  Q  L  G  K  P  F  V  *  E :   R  F  L  F  P  A  S  F  L  E  T  T  L  E  G  C  S  R  S  C  K  R  A  C  F  S  P  Q  C  *  D  *  S  D  I  S  R  L  Q  N  L  E  Y  F  A  *  F   : E  L  H  C  Q  T  L  R  L  W  I  S  Q  G  W  A  N  R  R  *  K  P  C  L  Y  K  G  Y  G  D  L  W  I  C  R  S  R  I  H  G  Y  W :   S  F  N  *  Q  E  *  C  V  *  F  W  S  C  P  P  *  N  A  V  R  S  *  G  N  R  Q  E  *  T  I  R  R  T  Q  S  S  G  V  G  E  T  L  P  R  *  Q  T  *  G  L  P  C  S  G  Y  P  S  *  R  P  V  F  N  G  G  G  E  *  S  S  *  P  C  P  A  V  P  I  Q  R  S  S  V  *  T  K  H  E  *  H  C  *  R  T  G  A  T  L  S  T  I  *  R  F  R  K  Y  S  Q  P  R  *  Q  P  T  *  T  T  *  T  K  C  W  *  C  C  *  *  K  S  F  S  C  L  S  E  T  V  C  F  S  P  L  R  *  I  I  K  Q  M  I  E  R  C  L  N  F  L  F  F  L  S  Y  M  C  L  S  S  L  I  S  S  *  G  *  *  R  T  S  A  H  L  Q  Y  Q  L  A  D  C  T  V  V  F  G  *  C  I  E  S  I  L  S  V  G  P  E  C  V  C  N  F  E  F  C  S  Q  L  T  I  C  S  L  F  D  T  K  G  M  H  T  T  L  S  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16508" stop="16586"/>
                    <exon start="16965" stop="17272"/>
                    <exon start="17661" stop="17796"/>
                    <exon start="17882" stop="18024"/>
                    <exon start="18125" stop="18248"/>
                    <exon start="18692" stop="19134"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1230</number_coding_nucleotides>
                  <number_encoded_amino_acids>410</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCFLFVVVLMGICLSARIKAESPFHTGLNSRSVSIDGGDSNSSSRVPSTTRSEGEILQSPNLKSFSFSDLRTATRNFRPDSVLGEGGFGSVFKGWIDENTFAATKPGTGVIIAVKRLNQEGFQGHREWLAEVNYLGQFSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWKLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNILLDSNYTAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYMATGHLTSKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLGNKRKVFRVLDTRLEGQYSMEVASKVANLALRCLSKDPRFRPSMSDIVKELEQLYQQSKDSGNTRSHASNRPRPRRRSAGDVANRNPSVAYPRPSASPLYAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23405" PGL_stop="23103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23405" e_stop="23103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="23405" e_stop="23103" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGTGGTTCGGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGTTACTGTCGCACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCTCTAGCTGGGGCCTCAATAACTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  R  V  M  W  C  G  S  R  T  T  T  L  R  K  A  L  *  H  T  *  H  P  Q  *  C  I  L  K  Q  R  C  D  Y  G  I  W  R  N  L  V  L  S  V  I  N  L  W  F  G  R  D  L  S  S  T  T  S  H  W  C  C  S  T  S  T  T  S  G  Y  C  R  T  T  S  T  T  S  S  S  R  S  T  P  T  S  S  W  G  L  N  N  C </first_frame>
            <second_frame>  W  V  *  A  P  S  L  V  R  E  S  C  G  V  V  V  A  P  P  P  *  E  K  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  V  T  T  G  S  G  G  T  W  S  S  L  S  S  I  C  G  S  V  E  T  S  L  A  R  P  L  T  G  A  A  P  R  P  R  P  L  V  T  V  A  L  L  A  R  P  L  A  R  D  L  P  L  P  L  A  G  A  S  I  T   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  E  S  H  V  V  W  *  S  H  H  H  P  E  K  S  P  L  A  H  L  T  P  S  I  V  Y  P  E  A  K  V  *  L  R  D  L  E  E  P  G  P  L  C  H  Q  S  V  V  R  *  R  P  L  *  H  D  L  S  L  V  L  L  H  V  H  D  L  W  L  L  S  H  Y  *  H  D  L  *  L  E  I  Y  P  Y  L  *  L  G  P  Q  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23306" stop="23103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILKQRCDYGIWRNLVLSVINLWFGRDLSSTTSHWCCSTSTTSGYCRTTSTTSSSRSTPTSSWGLNNC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23296" stop="23105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKGVTTGSGGTWSSLSSICGSVETSLARPLTGAAPRPRPLVTVALLARPLARDLPLPLAGASIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24530" PGL_stop="23824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24530" e_stop="23824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="24530" e_stop="23824" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24530" stop="24014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24252" stop="23824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGTACCTCTACCCCCACTCTGCTGAGCTGCAACACCACTACTGGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTTGGTCGAGGCCCACCACGACCCCTTTGAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAACCCACTATAATTTCCTCGCCCTGTAGGTCGCTGTTGTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCTTCTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGTCCCCTCCCTAGATGTCCGAAATACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACGAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</gDNA_template>
            <first_frame> G  G  T  S  T  P  T  L  L  S  C  N  T  T  T  G  N  S  I  T  S  T  *  L  N  S  A  T  T  S  T  L  W  C  W  W  S  S  L  E  *  R  I  W  S  R  P  T  T  T  P  L  R  S  T  L  P  H  *  M  I  G  I  S  T  S  K  T  K  S  L  T  W  E  L  L  C  G  P  *  K  P  T  I  I  S  S  P  C  R  S  L  L  *  T  V  R  A  L  T  W  A  I  R  T  P  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  A  *  Y  T  S  S  F  R  V  P  K  L  F  S  L  H  Q  F  R  L  F  G  G  A  H  N  G  L  E  R  S  P  L  P  R  C  P  K  Y  S  *  P  D  R  E  S  Q  S  P  H  E  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  *  T  I  L  S  Q  T  L  K  P  Q   </first_frame>
            <second_frame>  V  V  P  L  P  P  L  C  *  A  A  T  P  L  L  E  T  L  S  P  L  P  D  *  T  L  P  R  P  L  P  C  G  A  G  G  L  V  W  N  E  E  F  G  R  G  P  P  R  P  L  *  E  V  H  C  R  I  R  *  S  G  S  P  Q  V  K  Q  N  L  *  P  G  N  C  C  V  D  P  E  N  P  L  *  F  P  R  P  V  G  R  C  C  E  P  Y  E  P  *  P  G  P  *  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  P  D  E  A  P  *  N  W  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  T  M  D  W  K  E  V  P  S  L  D  V  R  N  T  A  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  C  L  R  L  S  N  L  K  </second_frame>
            <third_frame>   W  Y  L  Y  P  H  S  A  E  L  Q  H  H  Y  W  K  L  Y  H  L  Y  L  T  E  L  C  H  D  L  Y  P  V  V  L  V  V  *  S  G  M  K  N  L  V  E  A  H  H  D  P  F  E  K  Y  T  A  A  L  D  D  R  D  L  H  K  *  N  K  I  S  D  L  G  T  V  V  W  T  L  K  T  H  Y  N  F  L  A  L  *  V  A  V  V  N  R  T  S  P  D  L  G  H  K  N  P  *  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  V  I  P  Y  L  Q  M  R  H  P  E  T  G  L  I  Y  E  L  F  *  G  P  Q  T  L  L  S  P  S  I  P  P  L  W  R  R  S  Q  W  T  G  K  K  S  P  P  *  M  S  E  I  Q  L  T  *  *  R  K  S  I  P  S  R  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  A  *  T  T  G  K  N  A  P  H  T  L  *  P  I  N  H  P  V  S  D  S  Q  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24103" stop="23825"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWPDIRALLGSPNSSLSINSASLAALTMDWKEVPSLDVRNTADLIEKVNPLTNLRILSVSFGIMANACLDNWQKRASYSVTDKPSCLRLSNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="26383" PGL_stop="26970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26383" e_stop="26970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="26383" e_stop="26970" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26383" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGAAAGGCCAATGTTATGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGCACTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGAGGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAATTTGATGACGAAAAATTATGTCTCATTCGAGACAGAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTACTCGGTATTCCATCCATCCGGGAGCGGCAAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAATGTGAGCACCAGCGGCCAGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  E  R  P  M  L  W  P  M  L  *  V  G  R  L  L  A  W  G  V  L  Q  H  L  V  L  W  R  D  H  W  L  E  M  C  R  Y  *  L  T  V  L  S  A  C  R  F  Q  K  R  V  R  G  *  L  L  L  L  R  L  G  L  L  *  S  S  K  F  V  H  T  N  L  M  T  K  N  Y  V  S  F  E  T  E  Y  *  E  G  K  L  R  R  L  S  L  I  L  M  V  S  C  G  S  E  A  E  F  V  C  P  G  Q  A  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  R  E  R  Q  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  F  Q  T  L  F  L  G  V  *  L  A  S  R  S  N  V  S  T  S  G  Q  G  V  Y  L  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  R  K  G  Q  C  Y  G  R  C  S  E  *  E  D  S  *  H  G  E  S  C  S  T  *  Y  Y  G  E  T  I  G  *  R  C  A  D  I  S  *  Q  S  C  P  L  A  D  F  R  R  E  *  G  D  D  C  F  Y  *  G  S  V  F  F  S  R  A  N  S  C  T  P  I  *  *  R  K  I  M  S  H  S  R  Q  S  I  E  R  G  S  *  G  G  C  P  *  F  *  W  C  L  A  D  R  R  Q  N  L  C  A  Q  D  R  R  F  D  *  I  D  S  *  G  G  P  L  Y  S  V  F  H  P  S  G  S  G  K  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  F  R  L  C  F  *  V  F  D  L  P  A  G  Q  M  *  A  P  A  A  R  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  M  A  D  A  L  S  R  K  T  P  S  M  G  S  L  A  A  L  S  I  M  E  R  P  L  A  R  D  V  Q  I  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  E  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  R  V  L  R  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  R  T  G  D  L  I  R  L  I  L  E  E  A  H  C  T  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  S  D  F  V  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26385" stop="26969"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVMADALSRKTPSMGSLAALSIMERPLARDVQILANSLVRLQISEESEGMIAFIEARSSLVEQIRAHQFDDEKLCLIRDRVLRGEAKEAVLDSDGVLRIGGRICVPRTGDLIRLILEEAHCTRYSIHPGAAKMYHDLSQHYWWCGMKRDISDFVSRCLTCQQVKCEHQRPGGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="29172" PGL_stop="29758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29172" e_stop="29758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="29172" e_stop="29758" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29172" stop="29758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCATTGTATCTGAGACATTGTTGTGGTAAGAGGATGGTGTACTATTTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTACTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGAACTGAGAGACAGCGGGTGTGTATCGTTAGGAAAGACATGCATCACGATATTTGACATTGCATCTCATGACATTGCACATCTTATTATTGATGAACTTGAACATGTGTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGTCTGTGATTGTTGAATATTGAGTTGATATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGTGTAAGGAGTACCCGTATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCTGGATCTTTGTGATACATTCTATTCTCTTCG</gDNA_template>
            <first_frame> F  A  L  Y  L  R  H  C  C  G  K  R  M  V  Y  Y  F  R  G  S  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  A  R  R  E  G  Y  Y  L  S  R  V  V  S  C  A  A  T  D  A  W  T  D  M  S  P  M  G  P  E  L  R  D  S  G  C  V  S  L  G  K  T  C  I  T  I  F  D  I  A  S  H  D  I  A  H  L  I  I  D  E  L  E  H  V  F  C  *  S  C  D  C  F  S  V  K  S  V  I  V  E  Y  *  V  D  I  E  N  V  *  T  D  R  V  W  L  L  S  G  V  F  G  K  L  L  G  C  S  V  E  V  *  I  G  C  K  E  Y  P  Y  F  V  H  L  T  C  V  *  R  F  A  C  W  V  P  R  G  L  V  L  T  P  C  F  Y  K  F  L  *  V  T  S  L  D  L  C  D  T  F  Y  S  L   </first_frame>
            <second_frame>  L  H  C  I  *  D  I  V  V  V  R  G  W  C  T  I  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  K  V  T  T  Y  R  G  S  C  R  A  P  R  Q  M  H  G  Q  I  C  P  P  W  V  P  N  *  E  T  A  G  V  Y  R  *  E  R  H  A  S  R  Y  L  T  L  H  L  M  T  L  H  I  L  L  L  M  N  L  N  M  C  F  A  D  L  V  I  V  S  L  *  S  L  *  L  L  N  I  E  L  I  L  R  M  C  K  L  I  E  C  G  Y  *  V  V  C  L  V  N  C  *  A  V  A  W  R  F  R  *  G  V  R  S  T  R  I  L  F  T  *  L  V  F  R  G  L  L  V  G  Y  R  V  V  W  Y  S  P  L  A  S  T  N  F  C  R  L  R  A  W  I  F  V  I  H  S  I  L  F  </second_frame>
            <third_frame>   C  I  V  S  E  T  L  L  W  *  E  D  G  V  L  F  S  R  V  V  S  R  A  A  M  D  I  I  F  R  G  T  Y  R  A  P  R  R  L  L  L  I  E  G  R  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  C  I  V  R  K  D  M  H  H  D  I  *  H  C  I  S  *  H  C  T  S  Y  Y  *  *  T  *  T  C  V  L  L  I  L  *  L  F  L  C  E  V  C  D  C  *  I  L  S  *  Y  *  E  C  V  N  *  *  S  V  V  I  E  W  C  V  W  *  T  V  R  L  *  R  G  G  L  D  R  V  *  G  V  P  V  F  C  S  L  N  L  C  L  E  V  C  L  L  G  T  A  W  F  G  T  H  P  L  L  L  Q  I  F  V  G  Y  E  P  G  S  L  *  Y  I  L  F  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0016K14.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29172" stop="29474"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FALYLRHCCGKRMVYYFRGSYRAPRWILYFEGRIARREGYYLSRVVSCAATDAWTDMSPMGPELRDSGCVSLGKTCITIFDIASHDIAHLIIDELEHVFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 52 chains have been computed
$ 
$ memory statistics:
$ 64320 bytes spliced alignments in total
$ 30 spliced alignments have been stored
$ 2144 bytes was the average size of a spliced alignment
$ 14168 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1771 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 63 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:25:30
-->
