<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:46:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6484" ref_strand="+" ref_description="SGN-M6484 C2_At1g03110 [cosii_markers]">
      <seq>gagagagaaagaggaaggttttactctactgaacaacaatggaggaaactaacatggatgattgtgaacacaaccgtgaatctgaggttgctccggcgttaattgcagttcacccaactcagaaatcagtcgccgttgccgtcggttcgaatctccgcgtctttaaccttcaagaaggttgttcggtttcattggtggatgattcaggagtgcacatgcatagggattcaataagagcaattcgatatggtgctgaaggaaagctgtttgtatctgctggcgatgacaaacttgttaagatttgggttactgattcttggcggtgcataagttcggtgtcatccgagaagagagttactgctgttgccatcagtaatgatgggcgttttgtatccttcgcggataaatttggtgtaatttatgcagttgaaatagaaggttctcatgaaaatcaaagtctgcccaataagaaggcagtcccaattctcgcccactactgcagcatcattactagtctggagttttcacctgatggacgatacattattagtgccgatcgggacttcaaaatccgagtctctgtgttcccggaaaagccgtcagatggggctcatgagattcaaagtttttgccttggccattcagagtttgtttcctgccttgccttcatctgcagccaggattcccagcagtggtatttgctttcgggaggtggtgattcaactgtacgcttgtgggacttcacttgtggttctcttctcgatacctgtcatgttggagagacaggactattacagtcaaaagaaagaatagatgacaggttgctggctgtcactgatctctgtgccactcctggtggatcactaatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106321" stop="111278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106621" g_stop="106791" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106792" i_stop="107815" i_length="1024">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107816" g_stop="107980" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="337" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108316" g_stop="108496" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="518" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108981" g_stop="109037" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="575" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109131" g_stop="109201" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="646" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109202" i_stop="109982" i_length="781">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109983" g_stop="110061" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="725" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110540" g_stop="110596" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="782" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="110597" i_stop="110889" i_length="293">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110890" g_stop="110978" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="871" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-M6484" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106621" e_stop="106791"/>
          <exon e_start="107816" e_stop="107980"/>
          <exon e_start="108316" e_stop="108496"/>
          <exon e_start="108981" e_stop="109037"/>
          <exon e_start="109131" e_stop="109201"/>
          <exon e_start="109983" e_stop="110061"/>
          <exon e_start="110540" e_stop="110596"/>
          <exon e_start="110890" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGA-AGAAAGACGAAGGTTTAACTCTACTCAACAACAATGGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCAGTAAGTCACTATGCAAAAATAATCATTTTATTTTCTACTTTTTTTTATGATTATGATAATGTGTTCAAACTTAGTACTTGTCTATTTCGATGATGTTGACTTAGTTGGACATTGGCACGAAATTTAGGAAAAGAGAGATTTTCTGTAACTTGTGATAGTAAACCATGTATTCAAGTTAAATTGATGTCATTATTTTTGCGATAGACTAGTAATAGAGTGATAAAATGAAATTAGAGGTGTAAAATACTCCCTCGGTCCCAAAATAAGTGTTACTTAAAAAAATATCACAATCATTAAGAAATCAATAAATATGATGTGTAAACTACTTCTATTTGATAAATGTCTCTTGAGAATTGAACAATATTCAGAAAATGAACTATAAGTGTATAGTTGGAATGACATACTAATTATTGTCTTGAATTCTTAGAGTGATACTTATTTTTGGGACAATTTTTTTTGCTAAAGTGACACTTGGTTTGGAATGGGTGAGTATTATTAAAACTTGGTATAATACATAGACAGACTTTTAATTTGACCTCCACGGGTAGTTGAACTTCTGAACTTTCATCGCAACCATCTACACATTTCAAGATGATATAGGTGTGTATGGAGAACACCTTAACTTTGAAAATGCAAATCTAAACTCCTTTGAGGGGGTGCATTCTAGATGTGCATTTTCAAAGTTGGGGCTTTAGTTACCAGCTGAGACTAAGTTAAAGTGTTTATCTATGTATTATGTCTTAAAACTTCTCACACATTTTAAAGAAAAGTTTCTTATAAAGATTTTACTGGAGATTATGAATGTTCTTTACAACAATAGCTAAAGGAGAGATTTTTATATCTCTGGTCAATAATGGATGTAATCTTATATGTAGGTTTGGTTTTTTTTTAGGCTGATGTCACTTTAAGATTGGTATGCAATTTTATTTTTTCTTTAGACAAATTAGAGGGAAGTTTGACAACATTATCAAAGACTTTCAGTTTGCAGCTGGATTATATATTATATTCCACAATTTTGATGCAGAGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGTGTAAGTTTCTGATGTTCAAGTTCTGTTTTTTCTTAGACATACTTAACAGTAAGTTGCCCGGACTCTTCAAAAATGATGCTGAAATAGAACAAATCTCATGTAATAATAATAACAATACTAATAATATTTTTTCTTCTAAATTTTCTGTGTCAGAATATCTTTTGATAAGTGGATGTATGTTGATTATGTAAATTCTTCTTATACTGATAATTATTGGTTGCATCGACCACTGCAGATGTTTGTTCCTTTTCTTCCCCCTCTTTCCCCTTTTTTGTTTGTTTTAGATTTTTTCCTCATTAGGAGTTGAAGTTGTCTAACTGCTATGGTTTTAATAGGTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTGGTATTTCTTTTCTTTTCCCCTTTGTGTGAATTGCTTTATTTTTCCGTGGATCTATTTTTTTACCCTCCATATACGAGGGTTAGTGATTTACTCAGATATTGTTGTGATACTCATGAGTGGTCCTTCTAAGCGGTTTTCTATGGAAATTGTGTTTTCTGGTTGGCAATTGTATTCCTGGCTCAACTCTTTTACACAAATATCATGGATAAAGATCTACTGTCTTGATGCACATCTCTTGCACAATTTCTTGCAAGCCTTGTCCATTCTGGTGGTCAAGTGTAAAGCATTATTCATTCTGGTGAATGGATCATGATACTCCTATTGTCTATGATTACGCCATATAAGATTAAGTTCAACTTATTCTCAGCCCCCACGGATCATATGCCCACTTTTTTTTTAATCAAACTAGATTGATCTCCTAATCAAGGCCTCTGGTTTCAAAAGCTAGTTATTTTTTCTCAAAGAGAATTTTCCATCTTTGCAGGAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGAGTAATGTCATGCTTCTTATTAACCATGAATCTTAGTAAGATTTCTTGATGATCTCTTGCTAACATCAAAATTTCTTCTGGTTCATAATTACAGGTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGAGTAAGAATTTCTTGAAATTCTGGTGGTCCTAACACCTCGGTAGTGATGATCAAGCTGATCCAGAATAGTCTTTTTCTGTTGAAATATTGGTTATACTAATAAATTTTAAAATCTAGGGACAGTTCTCTGGTCATTATTGATAAAAGCCAATCTTGACATTTGATAAGGATACTTAACCCAAGAAAGGAGAAAAACATTTTGACCGGGATGATTTAGGTGGTCGTTTTGTGTCATCCAACTGTTACATCTGATGAAATATTTATACCATGCATGTCTTTGCCGAATTTATTCTTCTTTTACACGTTTTGTAGGTTTGTGAACACGGGTTGTGTGGAATTAGACAAAAGTGGCCTTATAATGACAATAACAAAAGCAAATACACAGTATATAAAACAAATAATGTGGTTCAATTAATGTGACCTAATCCTCGGTGTGGAGCAGAGATATTCCACTAATGAGTACAGAAAAGAGAGTACCAAAATTAGAGATAGAAACATGGCATTGGCTTTGGTGTTACTGTTATCTGTGTTTCTCTTTCGGTACCTGTGTTGACGACCTTCTTTCGTTTTTAAAAGTGCATTTTATTGCCTTCCAGCAATTCTATTCATCCTCCCCTCCCCTCCCCCCTCAAAAAAAAAATAATCAAAGGATAAATAAAAGATAGATGAAAATAGTTGTTGAGTATTGAACTTCGGCATACATTTCCACAGGAAGAAATTCTAGTTTTGACAATGCTTACTGGTTATCATGGTCATGGCTCATTTATTGTCTCAATTGTCAGGTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACTGTGAGTAAATTTTTAAAACGAACTAATTTTTTTAAAACCCAAATCACCTTTTTACGCCTTTTAAGGCTAAATTTGGAAAAGATAAGCAACTTTCTTATGATGGTATTCGGCCAACTTGCATGCACCTCGATTATTCAATTGTGTAACTGCCACCATAACTTTGGCAGATGGGAGGAAATAATCCCCCCCCCCCACACACACACACACATTTTTTTATTTATTTTGTTTGTGTGTGTCTGCTGAAATTTAAACCTGAGTTTTCATGATTCTCCTCCAACTTCATTGACCAGTGACTCCTAGGCCACACCCTCGAGTTCGATACAAAACAAAATTGGCAACGTAAACTACAAATACTTTTTCTGAAGTGTTTAGTTAAATGAAATTAATTACTTAAGAATTATATGAGTATTTTATTTTAATTTCATTTTTTTTATCTACTTTGACCATTGCTCTTTCTTTCTTTTTTTCTTTATGCCAGGTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAGGTAGCTTCATCTCTTTTGGAGTGAGATACTTGATAGATTTAATTTGGTTTTCTCTCTCCATCACAATAATTAATTGGCTGATTGAATCTCTTGCTAGAAAATAAATCTTTAGTGATTTGATTTAGCTGATTTTCAATCCATAAGCTTGTGGTGATTGTGTAATAGGGCGTGAAGCGATCGATCTTTCTTTGTTCCATTTCCTTTCTTCCTCTACGTTTCTTGTGTTGAAACAAGAAACTGCATTAAAGCTTTAATGTTTAGCTTAGTTCTTAATTTTCTCTGCAATTGTGAAGACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGC</genome_strand>
        <mrna_strand>GAGAGAGAAAGAGGAAGGTTTTACTCTACTGAACAACAATGGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCACCCAACTCAGAAATCAGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAACCTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTTGTTCGGTTTCATTGGTGGATGATTCAGGAGTGCACATGCATAGGGATTCAATAAGAGCAATTCGATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT...............................................................................................................................................................................................................................................................................................................................................GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTCTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTCACCTGATGGACGATACATTATTAGTGCCGATCGGGACTTCAAAATCCGA.............................................................................................GTCTCTGTGTTCCCGGAAAAGCCGTCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTCCTGCCTTGCCTTCATCTGCAGCCAGGATTCCCAGCAGTGGTATTTGCTTTCGGGAGGTGGTGATTCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTCGATACCTGTCATGTTGGAGAG.....................................................................................................................................................................................................................................................................................................ACAGGACTATTACAGTCAAAAGAAAGAATAGATGACAGGTTGCTGGCTGTCACTGATCTCTGTGCCACTCCTGGTGGATCACTAATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="106621" PGL_stop="110978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106621" e_stop="106791"/>
            <exon e_start="107816" e_stop="107980"/>
            <exon e_start="108316" e_stop="108496"/>
            <exon e_start="108981" e_stop="109037"/>
            <exon e_start="109131" e_stop="109201"/>
            <exon e_start="109983" e_stop="110061"/>
            <exon e_start="110540" e_stop="110596"/>
            <exon e_start="110890" e_stop="110978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.953"/>
          <exon-intron don_prob="0.809" acc_prob="0.820" e_score="0.982"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="0.994"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.965"/>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="0.972"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="0.975"/>
          <exon-intron don_prob="0.926" acc_prob="0.948" e_score="0.982"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="106621" e_stop="106791" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="106792" i_stop="107815" i_length="1024"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="107816" e_stop="107980" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.809" acc_prob="0.820">
            <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="108316" e_stop="108496" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="108981" e_stop="109037" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="109131" e_stop="109201" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109202" i_stop="109982" i_length="781"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="109983" e_stop="110061" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="110540" e_stop="110596" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.948">
            <gDNA_intron_boundary i_start="110597" i_stop="110889" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="0.944">
            <gDNA_exon_boundary e_start="110890" e_stop="110978" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106621" stop="106791"/>
              <exon start="107816" stop="107980"/>
              <exon start="108316" stop="108496"/>
              <exon start="108981" stop="109037"/>
              <exon start="109131" stop="109201"/>
              <exon start="109983" stop="110061"/>
              <exon start="110540" stop="110596"/>
              <exon start="110890" stop="110978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGAAAGACGAAGGTTTAACTCTACTCAACAACAATGGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCA : AGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT : GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG : GAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGA : GTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGA : GTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACT : GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAG : ACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGC</gDNA_template>
            <first_frame> E  K  K  D  E  G  L  T  L  L  N  N  N  G  G  N  *  H  G  *  L  *  T  Q  P  *  I  *  G  C  S  G  V  N  C  S  S  S  N  S  E  I  R  R  R  C  R  R  F  E  S  P  R  L  *  S  S  :  R  R  L  F  G  F  I  G  G  *  F  R  S  A  H  A  *  G  F  N  K  S  N  S  I  W  C  *  R  K  A  V  C  I  C  W  R  *  Q  T  C  *  D  L  G  Y  *  F  L  A  V  H  K  F  G  :  V  I  R  E  E  S  Y  C  C  C  H  Q  *  *  W  A  F  C  I  L  R  G  *  I  W  C  N  L  C  S  *  N  R  R  F  S  *  K  S  K  C  A  Q  *  E  G  S  P  N  S  R  P  L  L  Q  H  H  Y  *  S   : G  V  F  T  R  W  T  L  H  Y  *  C  R  S  G  L  Q  N  P   : S  L  C  V  P  R  K  A  I  R  W  G  S  *  D  S  K  F  L  P  W  P  F  R  :  V  C  F  L  P  C  L  H  L  Q  P  G  F  P  A  V  V  F  A  F  R  R  W  *  F  N   : C  T  L  V  G  L  H  L  W  F  S  S  *  Y  L  S  C  W  R   : D  R  T  I  T  V  K  R  R  N  R  *  Q  V  A  G  C  H  *  S  L  C  H  S  L  G  I  S  N  R </first_frame>
            <second_frame>  R  R  K  T  K  V  *  L  Y  S  T  T  M  E  E  T  N  M  D  D  C  E  H  N  R  E  S  E  V  A  P  A  L  I  A  V  H  P  T  Q  K  S  V  A  V  A  V  G  S  N  L  R  V  F  N  L  Q :   E  G  C  S  V  S  L  V  D  N  S  G  V  H  M  H  K  D  S  I  R  A  I  Q  Y  G  A  E  G  K  L  F  V  S  A  G  D  D  K  L  V  K  I  W  V  T  D  S  W  R  C  I  S  S  V :   S  S  E  K  R  V  T  A  V  A  I  S  N  D  G  R  F  V  S  F  A  D  K  F  G  V  I  Y  A  V  E  I  E  G  S  H  E  N  Q  S  V  P  N  K  K  A  V  P  I  L  A  H  Y  C  S  I  I  T  S  L  :  E  F  S  P  D  G  R  Y  I  I  S  A  D  R  D  F  K  I  R  :  V  S  V  F  P  E  K  P  S  D  G  A  H  E  I  Q  S  F  C  L  G  H  S  E :   F  V  S  C  L  A  F  I  C  N  Q  D  S  Q  Q  W  Y  L  L  S  G  G  G  D  S  T  :  V  R  L  W  D  F  T  C  G  S  L  L  D  T  C  H  V  G  E  :  T  G  L  L  Q  S  K  E  G  I  D  D  R  L  L  A  V  T  D  L  C  A  T  P  W  G  S  L  I   </second_frame>
            <third_frame>   E  E  R  R  R  F  N  S  T  Q  Q  Q  W  R  K  L  T  W  M  I  V  N  T  T  V  N  L  R  L  L  R  R  *  L  Q  F  I  Q  L  R  N  P  S  P  L  P  S  V  R  I  S  A  S  L  I  F   : K  K  V  V  R  F  H  W  W  I  I  Q  E  C  T  C  I  R  I  Q  *  E  Q  F  N  M  V  L  K  E  S  C  L  Y  L  L  A  M  T  N  L  L  R  F  G  L  L  I  L  G  G  A  *  V  R   : C  H  P  R  R  E  L  L  L  L  P  S  V  M  M  G  V  L  Y  P  S  R  I  N  L  V  *  F  M  Q  L  K  *  K  V  L  M  K  I  K  V  C  P  I  R  R  Q  S  Q  F  S  P  T  T  A  A  S  L  L  V  W :   S  F  H  Q  M  D  V  T  L  L  V  P  I  G  T  S  K  S  E :   S  L  C  S  Q  K  S  H  Q  M  G  L  M  R  F  K  V  F  A  L  A  I  Q   : S  L  F  P  A  L  P  S  S  A  T  R  I  P  S  S  G  I  C  F  Q  E  V  V  I  Q  L :   Y  A  C  G  T  S  L  V  V  L  F  L  I  P  V  M  L  E  R :   Q  D  Y  Y  S  Q  K  K  E  *  M  T  G  C  W  L  S  L  I  F  V  P  L  L  G  D  L  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106643" stop="106791"/>
                    <exon start="107816" stop="107980"/>
                    <exon start="108316" stop="108496"/>
                    <exon start="108981" stop="109037"/>
                    <exon start="109131" stop="109201"/>
                    <exon start="109983" stop="110061"/>
                    <exon start="110540" stop="110596"/>
                    <exon start="110890" stop="110976"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYSTTMEETNMDDCEHNRESEVAPALIAVHPTQKSVAVAVGSNLRVFNLQEGCSVSLVDNSGVHMHKDSIRAIQYGAEGKLFVSAGDDKLVKIWVTDSWRCISSVSSEKRVTAVAISNDGRFVSFADKFGVIYAVEIEGSHENQSVPNKKAVPILAHYCSIITSLEFSPDGRYIISADRDFKIRVSVFPEKPSDGAHEIQSFCLGHSEFVSCLAFICNQDSQQWYLLSGGGDSTVRLWDFTCGSLLDTCHVGETGLLQSKEGIDDRLLAVTDLCATPWGSLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 2536 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2536 bytes was the average size of a spliced alignment
$ 5752 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5752 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:46:19
-->
