<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:34:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248513" ref_strand="+" ref_description="SGN-E248513 [cLEF-59-F15]">
      <seq>aacccttttcgcctccatttccttcaatcaagaaatcaaaggctgtgtggaacttgaaccatttgataactatgtcggatgatgagagagaagagaaggagttggatctgacaagtcctgaggttgttactaagtataagggtgctgctgaaatcgtcaacaaggctctgcagttggtggtgtctgaatgcaagccaaaagcaaagatagttgatctttgtgaaaaaggagatgcctttatcaaagagcaaacagggaatatgtacaagaatgtgaagaagaaaatcgagaggggtgtggcattcccaacctgcatttcagttaacaataccgtctgccatttttctccactgtctagtgatgagacagtattggaagaaggtgatatggtgaaaattgatatggggtgtcatatcgatggctttattgctgttgttgctcatacacatgtggtccagggaggacctgttactggtagagctgctgatgttcttgcggctgctaatacagctgctgaagttgctctgaggcttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3158" stop="1248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2857" g_stop="2819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2818" i_stop="2738" i_length="81">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2737" g_stop="2615" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="162" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2614" i_stop="2307" i_length="308">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2306" g_stop="2222" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="247" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2221" i_stop="2121" i_length="101">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2120" g_stop="1971" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="397" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1970" i_stop="1686" i_length="285">
            <donor d_prob="0.563" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1685" g_stop="1550" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="533" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E248513" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2857" e_stop="2819"/>
          <exon e_start="2737" e_stop="2615"/>
          <exon e_start="2306" e_stop="2222"/>
          <exon e_start="2120" e_stop="1971"/>
          <exon e_start="1685" e_stop="1550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTTTCGCCTCCATTTCTTTCAATCAAGAAATCAAGTATGTGTAATTTCATTGCTTTTTTCAGCCTCCCTTTTCACTCCTTGTAACGTTTCTTTCTTTTTTTTTTCTCTGTGTTTTCAGCTGTGTAATACTTGAACCATTTGATAACTATGTCGGATGATGAGAGAGAAGAGAAGGAGTTGGATCTGACAAGTCCTGAGGTTGTTACTAAGTATAAGGGTGCTGCTGAAATCGTCAACAGTTAATATTCTATAACCCCTTTTCGTTTCTACTTCTTTTTTTGTGTTAAAAATAGAATCTTTACATGTTTTTTTATACCCCTTTTGGTTTTTTTGGATTGTAAAGTGTTCCCCGGGGATTATCTGATAACTGAAAATTTACTACCTGATGTTTGGAACTTTTGTACTACATGCATTTCAATTTGTTTGTCTTGTTTTGACTTGGCATGGAGTTTAAGAAAGTCAGGGAAGATTTTTGAATTTCATGGTCTTCAGCTTATTAAAGATAGGTGGAATGTACTCGATTAGTAATGATATGATATTATGCAGAGGCTCTGCAGTTGGTGGTGTCTGAATGCAAGGCAAAAGCAAAGATAGTTGATCTTTGTGAAAAAGGAGATGCCTTTATTAAAGAGTATGAACTTTGCTTGTTTCGATGTATTCTTAAGAGATTTTTTATTTCAGAATTGTGTGGGACATATGTGATGTCGATTTGATGAGTGAATTCTGGTACAGGCAAACAGGGAATATGTACAAGAATGTGAAGAAGAAAATCGAGAGGGGTGTGGCATTCCCAACCTGCATTTCAGTAAACAATACCGTCTGCCATTTTTCTCCACTGTCTAGTGATGAGACAGTATTGGAGGAAGGTGATATAGTGAAAATGTAAGATATAGTTTAGAGCACTTTGAGGGATTTAATCTCTTGCCATGGTTGTGACTTGTGCGTGGTAGAAAAGAGAAATGTGAAATTTAACTGAGTCCAAAATTGAAGAACTGTTTATCATGTAGCTATTCTTTTTCTCCCAATCCAATACTAACTATTTTAAGGTTTAATTGTTTTATGCAGAACATGAAGTTTCCTTTTGATGACTTAACTGTCTTTTATTGTATTGTAGAATCAGATAAGCTTTTGTAAGACTAAGTCATGACTCATGGTTATTATTTGCAGTGATATGGGGTGTCATATAGATGGCTTTATTGCTGTTGTTGCTCATACACATGTGGTCCAGGGAGGACCTGTTACTGGTAGGGCTGCTGATGTTCTTGCGGCTGCTAATACAGCTGCTGAAGTTGCTCTGAGGCTT</genome_strand>
        <mrna_strand>AACCCTTTTCGCCTCCATTTCCTTCAATCAAGAAATCAA.................................................................................AGGCTGTGTGGAACTTGAACCATTTGATAACTATGTCGGATGATGAGAGAGAAGAGAAGGAGTTGGATCTGACAAGTCCTGAGGTTGTTACTAAGTATAAGGGTGCTGCTGAAATCGTCAACA....................................................................................................................................................................................................................................................................................................................AGGCTCTGCAGTTGGTGGTGTCTGAATGCAAGCCAAAAGCAAAGATAGTTGATCTTTGTGAAAAAGGAGATGCCTTTATCAAAGA.....................................................................................................GCAAACAGGGAATATGTACAAGAATGTGAAGAAGAAAATCGAGAGGGGTGTGGCATTCCCAACCTGCATTTCAGTTAACAATACCGTCTGCCATTTTTCTCCACTGTCTAGTGATGAGACAGTATTGGAAGAAGGTGATATGGTGAAAAT.............................................................................................................................................................................................................................................................................................TGATATGGGGTGTCATATCGATGGCTTTATTGCTGTTGTTGCTCATACACATGTGGTCCAGGGAGGACCTGTTACTGGTAGAGCTGCTGATGTTCTTGCGGCTGCTAATACAGCTGCTGAAGTTGCTCTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354501" ref_strand="+" ref_description="SGN-E354501 [cTOS-17-A11]">
      <seq>tgttacgagcaccggcgaaggaaagccaaagttgttggatgagaaacaaacaaccatctacaagagagctgtagataaaagctacaacctgaagatgaaagcgtcaaggtttatcttcagtgaaatcagtcagaagttccctatcatgccatttacagctagggatttggaggagaaaagagctcgtttgggactagttgaatgtgttaaccatgatcttttgcagccgtatcctgttctacatgagaaacctggtgatttggttgctcacataaaattcactgcgctattgatgcctaacgggtcagataggatcacatctcatgctctccaggagctgtcacctgcgaagacaatagacgatgaacctgaaattaagacctggctagcccttcccgtaaaaaccaagaagaaaggtggcggcaagaaaaagaaaggcaagaaaggtgaatcatgccaagctgagcctatggaaggcgaaccaaatgttgctgaatcttgatttcaattccaagaactatttggttcattgttatatttgattttgggattactgaggtggttttggatctttcttgcggcctttcgctatatacacaagataggacaatgatcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5634" stop="3987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5334" g_stop="5310" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5309" i_stop="5206" i_length="104">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5205" g_stop="5069" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="162" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5068" i_stop="4966" i_length="103">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4965" g_stop="4874" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="254" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4873" i_stop="4736" i_length="138">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4735" g_stop="4553" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="437" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4552" i_stop="4469" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4468" g_stop="4287" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="619" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E354501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5334" e_stop="5310"/>
          <exon e_start="5205" e_stop="5069"/>
          <exon e_start="4965" e_stop="4874"/>
          <exon e_start="4735" e_stop="4553"/>
          <exon e_start="4468" e_stop="4287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACGAGCACCGGCGAAGGAAAGGTAAATGTTGAAACTTTGATACCTGGAAATTACGTGGAAACCAAAACGTATCAATTGAAAATGTCACAAATGTTTACTTTCTTGTGCCATCCAAAATTTTGCAGCCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAGGTCATCTTGATTTTCGATGTGTCCTTTATTAACGATGTGTGCAAGACATGTATTTGTTTCATGATTATCAATGTTGTATCCTTGTTCTGCGTAACTTGAACAGGGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTGGTCCGTAATATTTTAGCTGTGTTCTATAACATAACACCATGCTTAAGCAGCATCATTCTTTTTCTATATTCTCACACAAATGCCATATTCTAGATAATATTTCTCGTATTTTATACTTTTTCTTATAACGATATGCAGGTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGCCTAACGGGTCAGATAGGATCACATCTCATGCTCTCCAGGAGCTGTCACCTGCGAAGACAATAGACGATGAACCTGAAATTAAGACCTGGCTAGCCCTTCCCGTAAAAACCAAGAAGAAAGGTGGCGGCAAGAAAAAGAAAGGTAAGTTCAAGTAAGCTTTTAAAAAATTAACTGAAATGTAGCGTTAGATTCTTCGTGAAAAAAGTGCGATCTTTTGACTAGCAGGCAAGAAAGGTGAATCATGCCAAGCTGAGCCTATGGAAGGCGAACCAAATGTTGCTGAATCTTGATTTCAATTCCAAGAACTATTTGGTTCATTGTTATATTTGATTTTGGGATTACTGAGGTGGTTTTGGATCTTTCTTGCGGCCTTTCGCTATATACACAAGATAGGACAATGATCAGTA</genome_strand>
        <mrna_strand>TGTTACGAGCACCGGCGAAGGAAAG........................................................................................................CCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAG.......................................................................................................GGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTG..........................................................................................................................................GTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGCCTAACGGGTCAGATAGGATCACATCTCATGCTCTCCAGGAGCTGTCACCTGCGAAGACAATAGACGATGAACCTGAAATTAAGACCTGGCTAGCCCTTCCCGTAAAAACCAAGAAGAAAGGTGGCGGCAAGAAAAAGAAAG....................................................................................GCAAGAAAGGTGAATCATGCCAAGCTGAGCCTATGGAAGGCGAACCAAATGTTGCTGAATCTTGATTTCAATTCCAAGAACTATTTGGTTCATTGTTATATTTGATTTTGGGATTACTGAGGTGGTTTTGGATCTTTCTTGCGGCCTTTCGCTATATACACAAGATAGGACAATGATCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354191" ref_strand="+" ref_description="SGN-E354191 [cTOS-16-K5]">
      <seq>tgttacgagcaccggcgaaggaaagccaaagttgttggatgagaaacaaacaaccatctacaagagagctgtagataaaagctacaacctgaagatgaaagcgtcaaggtttatcttcagtgaaatcagtcagaagttccctatcatgccatttacagctagggatttggaggagaaaagagctcgtttgggactagttgaatgtgttaaccatgatcttttgcagccgtatcctgttctacatgagaaacctggtgatttggttgctcacataaaattcactgcgctattgatgcctaacgggtcagataggatcacatctcatgctctccaggagctgtcacctgcgaagacaatagacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5634" stop="4326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5334" g_stop="5310" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5309" i_stop="5206" i_length="104">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5205" g_stop="5069" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="162" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5068" i_stop="4966" i_length="103">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4965" g_stop="4874" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="254" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4873" i_stop="4736" i_length="138">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4735" g_stop="4626" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="364" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E354191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5334" e_stop="5310"/>
          <exon e_start="5205" e_stop="5069"/>
          <exon e_start="4965" e_stop="4874"/>
          <exon e_start="4735" e_stop="4626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACGAGCACCGGCGAAGGAAAGGTAAATGTTGAAACTTTGATACCTGGAAATTACGTGGAAACCAAAACGTATCAATTGAAAATGTCACAAATGTTTACTTTCTTGTGCCATCCAAAATTTTGCAGCCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAGGTCATCTTGATTTTCGATGTGTCCTTTATTAACGATGTGTGCAAGACATGTATTTGTTTCATGATTATCAATGTTGTATCCTTGTTCTGCGTAACTTGAACAGGGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTGGTCCGTAATATTTTAGCTGTGTTCTATAACATAACACCATGCTTAAGCAGCATCATTCTTTTTCTATATTCTCACACAAATGCCATATTCTAGATAATATTTCTCGTATTTTATACTTTTTCTTATAACGATATGCAGGTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGCCTAACGGGTCAGATAGGATCACATCTCATGCTCTCCAGGAGCTGTCACCTGCGAAGACAATAGACGAT</genome_strand>
        <mrna_strand>TGTTACGAGCACCGGCGAAGGAAAG........................................................................................................CCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAG.......................................................................................................GGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTG..........................................................................................................................................GTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGCCTAACGGGTCAGATAGGATCACATCTCATGCTCTCCAGGAGCTGTCACCTGCGAAGACAATAGACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313978" ref_strand="+" ref_description="SGN-E313978 [cTOA-19-M10]">
      <seq>ttgctctgaagcttgtaagaccaggaaggaagaactcggatgtaacagaagctattcagaaagttgctgcagcatatgactgcaagaatcgttgagggtgttttgagccatcaaatgaaacaatttgtgattgacggaaacaaagtcgtgttaagtgtgtctaatcctgataccagagtagatgatgcagagtttgaggaaaacgaggtctattcagttgacattgttacgagcaccggcgaaggaaagccaaagttgttggatgagaaacaaacaaccatctacaagagagctgtagataaaagctacaacctgaagatgaaagcgtcaaggtttatcttcagtgaaatcagtcagaagttccctatcatgccatttacagctagggatttggaggagaaaagagctcgtttgggactagttgaatgtgttaaccatgatcttttgcagccgtatcctgttctacatgagaaacctggtgatttggttgctcacataaaattcactgcgctattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5829" stop="4394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5525" g_stop="5310" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="249" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5309" i_stop="5206" i_length="104">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5205" g_stop="5069" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="386" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5068" i_stop="4966" i_length="103">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4965" g_stop="4874" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="478" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4873" i_stop="4736" i_length="138">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4735" g_stop="4694" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="520" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E313978" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5525" e_stop="5310"/>
          <exon e_start="5205" e_stop="5069"/>
          <exon e_start="4965" e_stop="4874"/>
          <exon e_start="4735" e_stop="4694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGGATGTAACAGAAGCTATTCAGAAAGTTGCTGCAGCATATGACTGCAAG-ATCGTTGAGGGTGTTTTGAGCCATCAAATGAAACAATTTGTGATTGACGGAAACAAAGTCGTGTTAAGTGTGTCTAATCCTGATACCAGAGTAGATGATGCAGAGTTTGAGGAAAACGAGGTCTATTCAGTTGACATTGTTACGAGCACCGGCGAAGGAAAGGTAAATGTTGAAACTTTGATACCTGGAAATTACGTGGAAACCAAAACGTATCAATTGAAAATGTCACAAATGTTTACTTTCTTGTGCCATCCAAAATTTTGCAGCCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAGGTCATCTTGATTTTCGATGTGTCCTTTATTAACGATGTGTGCAAGACATGTATTTGTTTCATGATTATCAATGTTGTATCCTTGTTCTGCGTAACTTGAACAGGGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTGGTCCGTAATATTTTAGCTGTGTTCTATAACATAACACCATGCTTAAGCAGCATCATTCTTTTTCTATATTCTCACACAAATGCCATATTCTAGATAATATTTCTCGTATTTTATACTTTTTCTTATAACGATATGCAGGTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGC</genome_strand>
        <mrna_strand>AACTCGGATGTAACAGAAGCTATTCAGAAAGTTGCTGCAGCATATGACTGCAAGAATCGTTGAGGGTGTTTTGAGCCATCAAATGAAACAATTTGTGATTGACGGAAACAAAGTCGTGTTAAGTGTGTCTAATCCTGATACCAGAGTAGATGATGCAGAGTTTGAGGAAAACGAGGTCTATTCAGTTGACATTGTTACGAGCACCGGCGAAGGAAAG........................................................................................................CCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAG.......................................................................................................GGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTG..........................................................................................................................................GTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544869" ref_strand="+" ref_description="SGN-E544869 [TUS-67-G20](-)">
      <seq>atcatccagggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaagtggggtttacggacttttttcaagtgggaggttggagagaaatccttccccaatcttgagaaactaaaactgcaggaatgtggtaagcttgaggagattccccctagttttggagatatttattcattgaaatttatggaaattgtaaatagtcctcaacttgaagattctgctctcaagattaaggaatacgttgaagagatgagaggagggagcgagcttcagatccttggccagaagaatatccccttatttaagtagcattagggttgaaaagtagattgtactttgcagggtacattgtatatgattaagaaaactttgttgcagttatgaaatatttttgtggatttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27891" stop="26867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27591" g_stop="27167" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="454"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E544869" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27591" e_stop="27167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAACTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAAATTATCAAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTTGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</genome_strand>
        <mrna_strand>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAAGTGGGGTTTACGGACTTTTTTCAAGTGGGAGGTTGGAGAGAAATCCTTCCCCAATCTTGAGAAACTAAAACTGCAGGAATGTGGTAAGCTTGAGGAGATTCCCCCTAGTTTTGGAGATATTTATTCATTGAAATTTATGGAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGTTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTAGGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544870" ref_strand="+" ref_description="SGN-E544870 [TUS-67-G20]">
      <seq>atcatccagggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaacttgcgtctaccgactctttccaagtgggaggttggagaggaatccttccccaatcttgagaaactaaaactgcaggaatgtggtaagcttgaggagattccacctagttttggagatatttattcattgaaatttatcgaaattgtaaatagtcctcaacttgaagattctgctctcaagattaaggaatacgctgaagagatgagaggagggagcgagcttcagatccttggccagaagaatatccccttatttaagtagcattatggttgaaaagtagattgtactttgcagggtacattgtatatgattaagaaaactttgttgcagttatgaaatatttttgtggatttctcannnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27891" stop="26869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27591" g_stop="27167" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="457"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E544870" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27591" e_stop="27167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAACTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAAATTATCAAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTTGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</genome_strand>
        <mrna_strand>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAACTAAAACTGCAGGAATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCGAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308524" ref_strand="+" ref_description="SGN-E308524 [cLEY-21-L21]">
      <seq>tcatccagggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaacttgcgtctaccgactctttccaagtgggaggttggagaggaatccttccccaatcttgagaaactaaaactgcaggaatgtggtaagcttgaggagattccacctagttttggagatatttattcattgaaatttatcgaaattgtaaatagtcctcaacttgaagattctgctctcaagattaaggaatacgctgaagagatgagaggagggagcgagcttcagatccttggccagaagaatatccccttatttaagtagcattatggttgaaaagtagattgtactttgcagggtacattgtatatgattaagaaaactttgttgcagttatgaaatatttttgtggatttctcnnnnnaaaaaaaaaaaaaaaaaaaaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27890" stop="26870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27590" g_stop="27167" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="453"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E308524" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27590" e_stop="27167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAACTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAAATTATCAAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTTGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</genome_strand>
        <mrna_strand>TCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAACTAAAACTGCAGGAATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCGAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543548" ref_strand="+" ref_description="SGN-E543548 [TUS-65-G19](-)">
      <seq>atcgcgtatcaatcgaaaatccgtcaaaaaagcacacgcctgaaatgttttttggatgggaattcggtcgatagatcgtcgggaaagcactctgggggatgtttctgacggtctttcgattggagcactcgattgagatgtttctgacggacttctaattgaaaattccgtcaaaaaagcacccgtctgagatgtttttttggatgggaatttggtcgaaagatcgtcgggaaagcactctaggggatgtttctgacggtctttcgattggagcactcgattgagatgtttctgacggacatttaattgaaaattccatcaaaaaaacgtcttaaaagtactcgtacagaatgtttttgaaggtatttcgatcggaaaatacactcaattgggatttttccaacggacttttaattgggaattcggtcgaaaaaccgtcaaaaaagcacttgtacgggatgtttccgaaggtgtttcgatcgaagaacacactcgattgagatgtttccaacggactttaattgggaattcaatctaaaaaccatcaaaaaagcactcgcgggaatgttttcgacagactttttatcgaaaattcgattagagtttgacgggttgtaagtcgaaattgattgatttctagtagtgaaaaagaaagaagaaaaagaatagtctaatgcgtgtgggtaggtccgaaaaaaggtcggaccaaattaggtttattgtaagtttttgtactaaaaataacatctaggttcttagcttgtacacaactttttttttgtgtgtcaattttaacccaatgttattattttttctttctaattaattaatcctctttttccttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32197" stop="30744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31897" g_stop="31040" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E543548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31897" e_stop="31040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAATTGAAAATTCCATCAAAAAAACGTCTTAAAAGTACTCGTACAGAATGTTTTTGAAGGTATTTCGATCGGAAAATACACTCAATTGGGATTTTTCCAACGGACTTTTAATTGGGAATTCGGTCGAAAAACCGTCAAAAAAGCACTTGTACGGGATGTTTCCGAAGGTGTTTCGATCGAAGAACACACTCGATTGAGATGTTTCCAACGGACTTTAATTGGGAATTCAATCTAAAAACCATCAAAAAAGCACTCGCGGGAATGTTTTCGACAGACTTTTTATCGAAAATTCGATTAGAGTTTGACGGGTTGTAAGTCGAAATTGATTGATTTCTAGTAGTGAAAAAGAAAGAAGAAAAAGAATAGTCTAATGCGTGTGGGTAGGTCCGAAAAAAGGTCGGACCAAATTAGGTTTATTGTAAGTTTTTGTACTAAAAATAACATCTAGGTTCTTAGCTTGTACACAACTTTTTTTTTGTGTGTCAATTTTAACCCAATGTTATTATTTTTTCTTTCTAATTAATTAATCCTCTTTTTCCTTTTAAAGAAATGGA</genome_strand>
        <mrna_strand>ATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATG-TTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAATTGAAAATTCCATCAAAAAAACGTCTTAAAAGTACTCGTACAGAATGTTTTTGAAGGTATTTCGATCGGAAAATACACTCAATTGGGATTTTTCCAACGGACTTTTAATTGGGAATTCGGTCGAAAAACCGTCAAAAAAGCACTTGTACGGGATGTTTCCGAAGGTGTTTCGATCGAAGAACACACTCGATTGAGATGTTTCCAACGGACTTTAATTGGGAATTCAATCTAAAAACCATCAAAAAAGCACTCGCGGGAATGTTTTCGACAGACTTTTTATCGAAAATTCGATTAGAGTTTGACGGGTTGTAAGTCGAAATTGATTGATTTCTAGTAGTGAAAAAGAAAGAAGAAAAAGAATAGTCTAATGCGTGTGGGTAGGTCCGAAAAAAGGTCGGACCAAATTAGGTTTATTGTAAGTTTTTGTACTAAAAATAACATCTAGGTTCTTAGCTTGTACACAACTTTTTTTTTGTGTGTCAATTTTAACCCAATGTTATTATTTTTTCTTTCTAATTAATTAATCCTCTTTTTCCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746366" ref_strand="+" ref_description="SGN-E746366 [GI|47104278]">
      <seq>tgatcatcaatcaatattttcttcataattttctctgataattttggtcatacatatcaattaattatttgtatcgatcgatatcgagttagctatggatagaataggagagttggcatcaaagaaggcagcagtaattttcacaaagagttcatgttttatgtgtcatagtattaaagcactattttatgatattggagcaagtccagcaattcatgaacttgatgaagatccaaaagggaaagaaatggagtgggcattgagaagtttaggttgtaatccatgtgttcctgctgtttttattggtggaaaatatgttggatcatgtaaggatgttatatccttacaagttgatggttcactcaaacaaatgctcattgatgccaaagctatttggttataactaaccaaaaaaaaacacaataatcaatcaatttttcgatcgcgtatcaatcgaaaatccgtcaaaaaagcacacgcctgaaatgtttttttggatgggaattcggtcgatagatcgtcgggaaagcactctgggggatgtttctgacggtctttcgattggagcactcgattgagatgtttctgacggacttctaattgaaaattccgtcaaaaaagcacccgtctgagatgtttttttggatgggaatttggtcgaaagatcgtcgggaaagcactctaggggatgtttctgacggtctttcgattggagcactcgattgagatgtttctgacggacatttaattgaaaattccatcaaaaaaacgtcttaaaagtactcgtacagaatgtttttgaaggtatttcgatcggaaaatacactcaattgggatttttccaacggacttttaattgggaattcggtcgaaaaaccgtcaaaaaagcacttgtacgggatgtttccgaaggtgtttcgatcgaagaacacactcgattgagatgtttccaacggactttaattgggaattcaatctaaaaaccatcaaaaaagcactcgcgggaatgttttcgacagactttttatcgaaaattcgattagagtttgacgggttgtaagtcgaaattgattgatttctagtagtgaaaaagaaagaagaaaaagaatagtctaatgcgtgtgggtaggtccgaaaaaaggtcggaccaaattaggtttattgtaagtttttgtactaaaaataacatctaggttcttagcttgtacacaactttttttttgtgtgtcaattttaacccaatgttattattttttctttctaattaattaatcctctttttccttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32638" stop="30744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32338" g_stop="31045" g_length="1294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1294" r_length="1294" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E746366" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1294</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32338" e_stop="31045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAATTGAAAATTCCATCAAAAAAACGTCTTAAAAGTACTCGTACAGAATGTTTTTGAAGGTATTTCGATCGGAAAATACACTCAATTGGGATTTTTCCAACGGACTTTTAATTGGGAATTCGGTCGAAAAACCGTCAAAAAAGCACTTGTACGGGATGTTTCCGAAGGTGTTTCGATCGAAGAACACACTCGATTGAGATGTTTCCAACGGACTTTAATTGGGAATTCAATCTAAAAACCATCAAAAAAGCACTCGCGGGAATGTTTTCGACAGACTTTTTATCGAAAATTCGATTAGAGTTTGACGGGTTGTAAGTCGAAATTGATTGATTTCTAGTAGTGAAAAAGAAAGAAGAAAAAGAATAGTCTAATGCGTGTGGGTAGGTCCGAAAAAAGGTCGGACCAAATTAGGTTTATTGTAAGTTTTTGTACTAAAAATAACATCTAGGTTCTTAGCTTGTACACAACTTTTTTTTTGTGTGTCAATTTTAACCCAATGTTATTATTTTTTCTTTCTAATTAATTAATCCTCTTTTTCCTTTTAAAGAA</genome_strand>
        <mrna_strand>TGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAATTGAAAATTCCATCAAAAAAACGTCTTAAAAGTACTCGTACAGAATGTTTTTGAAGGTATTTCGATCGGAAAATACACTCAATTGGGATTTTTCCAACGGACTTTTAATTGGGAATTCGGTCGAAAAACCGTCAAAAAAGCACTTGTACGGGATGTTTCCGAAGGTGTTTCGATCGAAGAACACACTCGATTGAGATGTTTCCAACGGACTTTAATTGGGAATTCAATCTAAAAACCATCAAAAAAGCACTCGCGGGAATGTTTTCGACAGACTTTTTATCGAAAATTCGATTAGAGTTTGACGGGTTGTAAGTCGAAATTGATTGATTTCTAGTAGTGAAAAAGAAAGAAGAAAAAGAATAGTCTAATGCGTGTGGGTAGGTCCGAAAAAAGGTCGGACCAAATTAGGTTTATTGTAAGTTTTTGTACTAAAAATAACATCTAGGTTCTTAGCTTGTACACAACTTTTTTTTTGTGTGTCAATTTTAACCCAATGTTATTATTTTTTCTTTCTAATTAATTAATCCTCTTTTTCCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543549" ref_strand="+" ref_description="SGN-E543549 [TUS-65-G19]">
      <seq>gtgatcatcaatcaatattttcttcataattttctctgataattttggtcatacatatcaattaattatttgtatcgatcgatatcgagttagctatggatagaataggagagttggcatcaaagaaggcagcagtaattttcacaaagagttcatgttttatgtgtcatagtattaaagcactattttatgatattggagcaagtccagcaattcatgaacttgatgaagatccaaaagggaaagaaatggagtgggcattgagaagtttaggttgtaatccatgtgttcctgctgtttttattggtggaaaatatgttggatcatgtaaggatgttatatccttacaagttgatggttcactcaaacaaatgctcattgatgccaaagctatttggttataactaaccaaaaaaaaacacaataatcaatcaatttttcgatcgcgtatcaatcgaaaatccgtcaaaaaagcacacgcctgaaatgtttttttggatgggaattcggtcgatagatcgtcgggaaagcactctgggggatgtttctgacggtctttcgattggagcactcgattgagatgtttctgacggacttctaattgaaaattccgtcaaaaaagcacccgtctgagatgtttttttggatgggaatttggtcgaaagatcgtcgggaaagcactctaggggaatgttctgaacgtctttcgattggagcactcgattgagatgtttctgacggacatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32639" stop="31291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32339" g_stop="31591" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E543549" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32339" e_stop="31591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAA</genome_strand>
        <mrna_strand>GTGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGAATGTTCTGAACGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304950" ref_strand="+" ref_description="SGN-E304950 [cLEX-10-N3]">
      <seq>tgatcatcaatcaatattttcttcataattttctctgataattttggtcatacatatcaattaattatttgtatcgatcgatatcgagttagctatggatagaataggagagttggcatcaaagaaggcagcagtaattttcacaaagagttcatgttttatgtgtcatagtattaaagcactattttatgatattggagcaagtccagcaattcatgaacttgatgaagatccaaaagggaaagaaatggagtgggcattgagaagtttaggttgtaatccatgtgttcctgctgtttttattggtggaaaatatgttggatcatgtaaggatgttatatccttacaagttgatggttcactcaaacaaatgctcattgatgccaaagctatttggttataactaaccaaaaaaaaacacaataatcaatcaatttttcgatcgcgtatcaatcgaaaatccgtcaaaaaagcacacgcctgaaatgtttttttggatgggaattcggtcgatagatcgtcgggaaagcactctgggggatgtttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32638" stop="31489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32338" g_stop="31789" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E304950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32338" e_stop="31789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGA</genome_strand>
        <mrna_strand>TGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555221" ref_strand="+" ref_description="SGN-E555221 [cTSC-6-M3]">
      <seq>cttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacaggatccaaggcggatcccttctcatagtgcagcatctggtacttcttcaatcccgaatatgcaactgttgagtcggggaagttggccagtgaagttaatgtaaacatcaagccttatttaatgctttcctggtaatttctgtatatttatcaacaataaatagcttaatgttttcttctttaaaattgaagtatctcctcattgtctcattttatcaatggtatgaagttgcaacttatccaaatataggaatttgtcattatttggaccaattaggttgcggccctacccccaccctgcttaaacgcgggatgctttctgcgccagagacttttcagtagagtaagagatgaagcaaattaagatgcatctctatcaccacaagatactctctgtcccttagttttgatctatataaatctctgttagtttctttagaactaagggattgcttggtagagtatattaacaaaaataatgcatgcgtaactctgtgtattagtcatatcttgtttggtacattttttcatgctatgtactctattgtgtataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35640" stop="34293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35340" g_stop="34591" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E555221" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35340" e_stop="34591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCCTCATTGTCTCATTTTATCAATGGTATGAAGTTGCAACTTATCCAAATATAGGAATTTGTCATTATTTGGACCAATTAGGTTGCGGCCCTACCCCCACCCTGCTTAAACGCGGGATGCTTTCTGCGCCAGAGACTTTTCAGTAGAGTAAGAGATGAAGCAAATTAAGATGCATCTCTATCACCACAAGATACTCTCTGTCCCTTAGTTTTGATCTATATAAATCTCTGTTAGTTTCTTTAGAACTAAGGGATTGCTTGGTAGAGTATATTAACAAAAATAATGCATGCGTAACTCTGTGTATTAGTCATATCTTGTTTGGTACATTTTTTCATGCTATGTACTCTATTGTGTATAGACT</genome_strand>
        <mrna_strand>CTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCCTCATTGTCTCATTTTATCAATGGTATGAAGTTGCAACTTATCCAAATATAGGAATTTGTCATTATTTGGACCAATTAGGTTGCGGCCCTACCCCCACCCTGCTTAAACGCGGGATGCTTTCTGCGCCAGAGACTTTTCAGTAGAGTAAGAGATGAAGCAAATTAAGATGCATCTCTATCACCACAAGATACTCTCTGTCCCTTAGTTTTGATCTATATAAATCTCTGTTAGTTTCTTTAGAACTAAGGGATTGCTTGGTAGAGTATATTAACAAAAATAATGCATGCGTAACTCTGTGTATTAGTCATATCTTGTTTGGTACATTTTTTCATGCTATGTACTCTATTGTGTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551647" ref_strand="+" ref_description="SGN-E551647 [cTSB-1-G17]">
      <seq>cttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacaggatccaaggcggatcccttctcatagtgcagcatctggtacttcttcaatcccgaatatgcaactgttgagtcggggaagttggccagtgaagttaatgtaaacatcaagccttatttaatgctttcctggtaatttctgtatatttatcaacaataaatagcttaatgttttcttctttaaaattgaagtatctcctcattgtctcattttatcaatggtatgaagttgcaacttatccaaatataggaatttgtcattatttggaccaattaggttgcggccctacccccaccctgcttaaacgcgggatgctttctgcgccagagacttttcagtagagtaagagatgaagcaaattaagatgcatctctatcaccacaagatactctctgtcccttagttttgatctatataaatctctgttagtttctttagaactaagggattgcttggtagagtatattaacaaaaataatgcatgcgtaactctgtgtattagtcatatcttgtttggtacattttttcatgctatgtactctattgtgtataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35640" stop="34293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35340" g_stop="34593" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="749" polyA_stop="763"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E551647" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35340" e_stop="34593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCCTCATTGTCTCATTTTATCAATGGTATGAAGTTGCAACTTATCCAAATATAGGAATTTGTCATTATTTGGACCAATTAGGTTGCGGCCCTACCCCCACCCTGCTTAAACGCGGGATGCTTTCTGCGCCAGAGACTTTTCAGTAGAGTAAGAGATGAAGCAAATTAAGATGCATCTCTATCACCACAAGATACTCTCTGTCCCTTAGTTTTGATCTATATAAATCTCTGTTAGTTTCTTTAGAACTAAGGGATTGCTTGGTAGAGTATATTAACAAAAATAATGCATGCGTAACTCTGTGTATTAGTCATATCTTGTTTGGTACATTTTTTCATGCTATGTACTCTATTGTGTATAGA</genome_strand>
        <mrna_strand>CTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCCTCATTGTCTCATTTTATCAATGGTATGAAGTTGCAACTTATCCAAATATAGGAATTTGTCATTATTTGGACCAATTAGGTTGCGGCCCTACCCCCACCCTGCTTAAACGCGGGATGCTTTCTGCGCCAGAGACTTTTCAGTAGAGTAAGAGATGAAGCAAATTAAGATGCATCTCTATCACCACAAGATACTCTCTGTCCCTTAGTTTTGATCTATATAAATCTCTGTTAGTTTCTTTAGAACTAAGGGATTGCTTGGTAGAGTATATTAACAAAAATAATGCATGCGTAACTCTGTGTATTAGTCATATCTTGTTTGGTACATTTTTTCATGCTATGTACTCTATTGTGTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370351" ref_strand="+" ref_description="SGN-E370351 [TUS-28-E5](-)">
      <seq>ggaccagtgagtcctgcactttctcctggtgctcaaccctctgctgggatggcaactatttatgggatgccacaactagcatcttctacggctgcctttgcagcaccttactctccgttacactctgctgctggcccttcaagcagtgcactgagagaaaatcgttttccagaaagaccaggccaaccagtatgtcaatattacatgaaaactggggactgtaaatttggatcgtcctgtaaatttcatcatcctgctgactggattgcatcaaagacagattgtactttcagtcccttaggccttcctttgcgtccgggggtgcagtcttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacaggatccaaggcggatcccttctcatagtgcagcatctggtacttcttcaatcccgaatatgcaactgttgagtcggggaagttggccagtgaagttaatgtaaacatcaagccttatttaatgctttcctggtaatttctgtatatttatcaacaataaatagcttaatgttttcttctttaaaattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36995" stop="34657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36695" g_stop="36378" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36377" i_stop="35351" i_length="1027">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35350" g_stop="34949" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="720" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E370351" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36695" e_stop="36378"/>
          <exon e_start="35350" e_stop="34949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCGGTATGACCAATATCCTTCGTTCTCCCTTTTGTTTGACTTGGCATCACTAATTAATAATCCAATATGGATACTCTGTGATGGACATTGTTGTTCATCTGGTCCTGCCTGAAAATTGAGATCATGTCAAGACTTATTATGCTGCTGGATGCATTGTGATTTGGAAGATTTTGTATGCATGCTGTCCTTTGCTTGCCTTCCGCTTGGTTGTTTACCGAATTCAAGAAGTATTAGTTTATTGAATCTATATTCACGGTTCTTCTTGGAGCTATGGAGATACTTGCCTATTGCATGCTCTGTGCCATGTAGAGAAACTGCAAAAGGGCAGTCTGACTTCTCTTATCTGTTCTGCAGCAGTCTCTGTTCAAACTTGCGTTTGAAATTATAGCTGGACCCTATGACTTATTAGGCTGCTGTTAGTTATCAGTCCCATGAAATGAAAACATAATTTGTTACAATTTGAAAATGTCACGATATCTAGCGTTAATGCCTGTCCCTACAGATTACAAACAGTTGAAATTTTGCAATTGTCTAATTTTCAAATGCCAAAATGATGGCAGCATATCTTCCAACTTCAGAACACTAGAGATGTCAGTCTCCTTGGATTGTTCCAGTATAAGCAAGCATGCTTGTTATCATCTTAAGTCTGATACAAGAATACTTCTTTCTGTTTCTTTCTTGGAAGAAGTGTAAATTCCTCTCCTTTCTTTCAGGCTGTTTTTTTAATTATCCTTGTAGTTTCTAGTACACTCGTCTGCTTGTATAACTATTAAAAGGGTTACTGTGTTGTTTTTCTCTGGCTTATGAATGCAGGCTTCAAAGGTTTCATTATCGGTGTACATTTTATGTATTTCTTATATCCTCCTTTGTCTAGCTGAGTTTTAACATATCTGAACCTTTACGGAAACTTTTACATATTTGAGCTAGAAGATAGCATCTTGTTATATGATCTTTCTTGAGTCTGTAGTATTGCTGTGTGTGTAACTCGTTACCTGTTTGGATACTCGACTAAATTTCATTCTGAAAGCAGGGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCC</genome_strand>
        <mrna_strand>GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370352" ref_strand="+" ref_description="SGN-E370352 [TUS-28-E5]">
      <seq>tggtacttatggtccagttttgcttcacccaggagtggtgaccattcagaactggagcacttactcgggaccagtgagtcctgcactttctcctggtgctcaaccctctgctgggatggcaactatttatgggatgccacaactagcatcttctacggctgcctttgcagcaccttactctccgttacactctgctgctggcccttcaagcagtgcactgagagaaaatcgttttccagaaagaccaggccaaccagtatgtcaatattacatgaaaactggggactgtaaatttggatcgtcctgtaaatttcatcatcctgctgactggattgcatcaaagacagattgtactttcagtcccttaggccttcctttgcgtccgggggtgcagtcttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacaggatccaaggcggatcccttctcatagtgcagcatctggtacttcttcaatcccgaatatgncactgttgagtcggggaagttggccagtgaagttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37147" stop="34748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36847" g_stop="36781" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36695" g_stop="36378" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="385" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36377" i_stop="35351" i_length="1027">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35350" g_stop="35048" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="688" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E370352" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36847" e_stop="36781"/>
          <exon e_start="36695" e_stop="36378"/>
          <exon e_start="35350" e_stop="35048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCGGTAATGATAGAGATATTCTCTCAATCAACATTCTGATATGACTTAAATAATAATCTTATGGGGTGATTAATTTGCTTTTTTGCAGGGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCGGTATGACCAATATCCTTCGTTCTCCCTTTTGTTTGACTTGGCATCACTAATTAATAATCCAATATGGATACTCTGTGATGGACATTGTTGTTCATCTGGTCCTGCCTGAAAATTGAGATCATGTCAAGACTTATTATGCTGCTGGATGCATTGTGATTTGGAAGATTTTGTATGCATGCTGTCCTTTGCTTGCCTTCCGCTTGGTTGTTTACCGAATTCAAGAAGTATTAGTTTATTGAATCTATATTCACGGTTCTTCTTGGAGCTATGGAGATACTTGCCTATTGCATGCTCTGTGCCATGTAGAGAAACTGCAAAAGGGCAGTCTGACTTCTCTTATCTGTTCTGCAGCAGTCTCTGTTCAAACTTGCGTTTGAAATTATAGCTGGACCCTATGACTTATTAGGCTGCTGTTAGTTATCAGTCCCATGAAATGAAAACATAATTTGTTACAATTTGAAAATGTCACGATATCTAGCGTTAATGCCTGTCCCTACAGATTACAAACAGTTGAAATTTTGCAATTGTCTAATTTTCAAATGCCAAAATGATGGCAGCATATCTTCCAACTTCAGAACACTAGAGATGTCAGTCTCCTTGGATTGTTCCAGTATAAGCAAGCATGCTTGTTATCATCTTAAGTCTGATACAAGAATACTTCTTTCTGTTTCTTTCTTGGAAGAAGTGTAAATTCCTCTCCTTTCTTTCAGGCTGTTTTTTTAATTATCCTTGTAGTTTCTAGTACACTCGTCTGCTTGTATAACTATTAAAAGGGTTACTGTGTTGTTTTTCTCTGGCTTATGAATGCAGGCTTCAAAGGTTTCATTATCGGTGTACATTTTATGTATTTCTTATATCCTCCTTTGTCTAGCTGAGTTTTAACATATCTGAACCTTTACGGAAACTTTTACATATTTGAGCTAGAAGATAGCATCTTGTTATATGATCTTTCTTGAGTCTGTAGTATTGCTGTGTGTGTAACTCGTTACCTGTTTGGATACTCGACTAAATTTCATTCTGAAAGCAGGGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAAT</genome_strand>
        <mrna_strand>TGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG.....................................................................................GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGNCACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700473" ref_strand="+" ref_description="SGN-E700473 [FA13AH11]">
      <seq>gatacccattacatccggaggaaagagaatgctcctattatttgaaaacggggcaatgcaaatttggtataacatgtaaattccatcatcctgaccatgctgaggtatcagcgccagtgactgcacgtccattttatccaacatcgccttctcttcctgttcctcctgaagaatataacagtacatcaactagctctagagtagcaggacctcaactcttacccggtccttatgtacctggtacttatggtccagttttgcttcacccaggagtggtgaccattcagaactggagcacttactcgggaccagtgagtcctgcactttctcctggtgctcaaccctctgctgggatggcaactatttatgggatgccacaactagcatcttctacggctgcctttgcagcaccttactctccgttacactctgctgctggcccttcaagcagtgcactgagagaaaatcgttttccagaaagaccaggccaaccagtatgtcaatattacatgaaaactggggactgtaaatttggatcgtcctgtaaatttcatcatcctgctgactggattgcatcaaagacagattgtactttcagtcccttaggccttcctttgcgtccgggggtgcagtcttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacangatccaaggcggatcccttctcatagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37382" stop="34817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37181" g_stop="37165" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37164" i_stop="37069" i_length="96">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37068" g_stop="36781" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="305" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36695" g_stop="36378" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="623" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36377" i_stop="35351" i_length="1027">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35350" g_stop="35117" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="857" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E700473" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37181" e_stop="37165"/>
          <exon e_start="37068" e_stop="36781"/>
          <exon e_start="36695" e_stop="36378"/>
          <exon e_start="35350" e_stop="35117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACCCATTACATCCGGTAATTGATCTGTTGTGTCGTATCATGTATGTATGCGTTTGTGTTTTCTACCAATAAGGTTATCTAAGATCTCTTGAACTTCATCAATTGCAACAGGAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTATCAGCGCCAGTGACTGCACGTCCATTTTATCCAACATCGCCTTCTCTTCCTGTTCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCGGTAATGATAGAGATATTCTCTCAATCAACATTCTGATATGACTTAAATAATAATCTTATGGGGTGATTAATTTGCTTTTTTGCAGGGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCGGTATGACCAATATCCTTCGTTCTCCCTTTTGTTTGACTTGGCATCACTAATTAATAATCCAATATGGATACTCTGTGATGGACATTGTTGTTCATCTGGTCCTGCCTGAAAATTGAGATCATGTCAAGACTTATTATGCTGCTGGATGCATTGTGATTTGGAAGATTTTGTATGCATGCTGTCCTTTGCTTGCCTTCCGCTTGGTTGTTTACCGAATTCAAGAAGTATTAGTTTATTGAATCTATATTCACGGTTCTTCTTGGAGCTATGGAGATACTTGCCTATTGCATGCTCTGTGCCATGTAGAGAAACTGCAAAAGGGCAGTCTGACTTCTCTTATCTGTTCTGCAGCAGTCTCTGTTCAAACTTGCGTTTGAAATTATAGCTGGACCCTATGACTTATTAGGCTGCTGTTAGTTATCAGTCCCATGAAATGAAAACATAATTTGTTACAATTTGAAAATGTCACGATATCTAGCGTTAATGCCTGTCCCTACAGATTACAAACAGTTGAAATTTTGCAATTGTCTAATTTTCAAATGCCAAAATGATGGCAGCATATCTTCCAACTTCAGAACACTAGAGATGTCAGTCTCCTTGGATTGTTCCAGTATAAGCAAGCATGCTTGTTATCATCTTAAGTCTGATACAAGAATACTTCTTTCTGTTTCTTTCTTGGAAGAAGTGTAAATTCCTCTCCTTTCTTTCAGGCTGTTTTTTTAATTATCCTTGTAGTTTCTAGTACACTCGTCTGCTTGTATAACTATTAAAAGGGTTACTGTGTTGTTTTTCTCTGGCTTATGAATGCAGGCTTCAAAGGTTTCATTATCGGTGTACATTTTATGTATTTCTTATATCCTCCTTTGTCTAGCTGAGTTTTAACATATCTGAACCTTTACGGAAACTTTTACATATTTGAGCTAGAAGATAGCATCTTGTTATATGATCTTTCTTGAGTCTGTAGTATTGCTGTGTGTGTAACTCGTTACCTGTTTGGATACTCGACTAAATTTCATTCTGAAAGCAGGGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGC</genome_strand>
        <mrna_strand>GATACCCATTACATCCG................................................................................................GAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTATCAGCGCCAGTGACTGCACGTCCATTTTATCCAACATCGCCTTCTCTTCCTGTTCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG.....................................................................................GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACANGATCCAAGGCGGATCCCTTCTCATAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270630" ref_strand="+" ref_description="SGN-E270630 [cLEM-6-G5]">
      <seq>tggtacttatggtccagttttgcttcacccaggagtggtgaccattcagaactggagcacttactcgggaccagtgagtcctgcactttctcctggtgctcaaccctctgctgggatggcaactatttatgggatgccacaactagcatcttctacggctgcctttgcagcaccttactctccgttacactctgctgctggcccttcaagcagtgcactgagagaaaatcgttttccagaaagaccaggccaaccagtatgtcaatattacatgaaaactggggactgtaaatttggatcgtcctgtaaatttcatcatcctgctgactggattgcatcaaagacagattgtactttcagtcccttaggccttcctttgcgtccgggggtgcagtcttgttccttttacatgcaaagaggattctgcaaatttggtggcacatgtaaattcgatcatcctatgggaacagtacgatatagtccatcagcttcttctcttcctgatataccgaatgccccttagatgtcgggatcttcccttactttggctcctatttcatcgccagagtaacaacccggatttgttacaggatccaaggcggatcccttctcatagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37147" stop="34817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36847" g_stop="36781" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36695" g_stop="36378" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="385" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36377" i_stop="35351" i_length="1027">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35350" g_stop="35117" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="619" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E270630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36847" e_stop="36781"/>
          <exon e_start="36695" e_stop="36378"/>
          <exon e_start="35350" e_stop="35117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCGGTAATGATAGAGATATTCTCTCAATCAACATTCTGATATGACTTAAATAATAATCTTATGGGGTGATTAATTTGCTTTTTTGCAGGGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCGGTATGACCAATATCCTTCGTTCTCCCTTTTGTTTGACTTGGCATCACTAATTAATAATCCAATATGGATACTCTGTGATGGACATTGTTGTTCATCTGGTCCTGCCTGAAAATTGAGATCATGTCAAGACTTATTATGCTGCTGGATGCATTGTGATTTGGAAGATTTTGTATGCATGCTGTCCTTTGCTTGCCTTCCGCTTGGTTGTTTACCGAATTCAAGAAGTATTAGTTTATTGAATCTATATTCACGGTTCTTCTTGGAGCTATGGAGATACTTGCCTATTGCATGCTCTGTGCCATGTAGAGAAACTGCAAAAGGGCAGTCTGACTTCTCTTATCTGTTCTGCAGCAGTCTCTGTTCAAACTTGCGTTTGAAATTATAGCTGGACCCTATGACTTATTAGGCTGCTGTTAGTTATCAGTCCCATGAAATGAAAACATAATTTGTTACAATTTGAAAATGTCACGATATCTAGCGTTAATGCCTGTCCCTACAGATTACAAACAGTTGAAATTTTGCAATTGTCTAATTTTCAAATGCCAAAATGATGGCAGCATATCTTCCAACTTCAGAACACTAGAGATGTCAGTCTCCTTGGATTGTTCCAGTATAAGCAAGCATGCTTGTTATCATCTTAAGTCTGATACAAGAATACTTCTTTCTGTTTCTTTCTTGGAAGAAGTGTAAATTCCTCTCCTTTCTTTCAGGCTGTTTTTTTAATTATCCTTGTAGTTTCTAGTACACTCGTCTGCTTGTATAACTATTAAAAGGGTTACTGTGTTGTTTTTCTCTGGCTTATGAATGCAGGCTTCAAAGGTTTCATTATCGGTGTACATTTTATGTATTTCTTATATCCTCCTTTGTCTAGCTGAGTTTTAACATATCTGAACCTTTACGGAAACTTTTACATATTTGAGCTAGAAGATAGCATCTTGTTATATGATCTTTCTTGAGTCTGTAGTATTGCTGTGTGTGTAACTCGTTACCTGTTTGGATACTCGACTAAATTTCATTCTGAAAGCAGGGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGC</genome_strand>
        <mrna_strand>TGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG.....................................................................................GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277721" ref_strand="-" ref_description="SGN-E277721 [cLEL-5-C12](-)">
      <seq>gcacgaggaagaatataacagtacatcaactagctctagagtagcaggacctcaactcttacccggtccttatgtacctggtacttatggtccagttttgcttcacccaggagtggtgaccattcagaactggagcacttactcgggaccagtgagtcctgcactttctcctggtgctcaaccctctgctgggatggcaactatttatgggatgccacaactagcatcttctacggctgcctttgcagcaccttactctccgttacactctgctgctggcccttcaagcagtgcactgagagaaaatcgttttccagaaagaccaggccaaccagtatgtcaatattacatgaaaactggggactgtaaatttggatcgtcctgtaaatttcatcatcctgctgactggattgcatcaaagacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37218" stop="36115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36925" g_stop="36781" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36695" g_stop="36415" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="426" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E277721" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277721" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36925" e_stop="36781"/>
          <exon e_start="36695" e_stop="36415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCGGTAATGATAGAGATATTCTCTCAATCAACATTCTGATATGACTTAAATAATAATCTTATGGGGTGATTAATTTGCTTTTTTGCAGGGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGA</genome_strand>
        <mrna_strand>GCACGAGGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG.....................................................................................GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272190" ref_strand="+" ref_description="SGN-E272190 [cLEM-19-A9]">
      <seq>tcttgtggatatggtgctaaatgccggtataatcatcctcctgatcgtagctctgttggtgctgtgctgttggaaagtagtgaatatccagaacgaataggagagcctacatgccagtactatctaagaacagcaacctgtaaatttggtgcatcatgcaagttccaccatccaagaaacttaggtggatcgttgagcaatatatcactaaatgtttatggatacccattacatccggaggaaagagaatgctcctattatttgaaaacggggcaatgcaaatttggtataacatgtaaattccatcatcctgaccatgctgaggtatcagcgccagtgactgcacgtccattttatccaacatcgccttctcttcctgttcctcctgaagaatataacagtacatcaactagctctagagtagcaggacctcaactcttacccggtccttatgtacctggtacttatggtccagttttgcttcacccaggagtggtgaccattcagaactggagcacttactcgggaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38420" stop="36478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38120" g_stop="38067" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38066" i_stop="37481" i_length="586">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37480" g_stop="37418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="117" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37417" i_stop="37285" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37284" g_stop="37165" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="237" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37164" i_stop="37069" i_length="96">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37068" g_stop="36781" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="525" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36695" g_stop="36689" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="532" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E272190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38120" e_stop="38067"/>
          <exon e_start="37480" e_stop="37418"/>
          <exon e_start="37284" e_stop="37165"/>
          <exon e_start="37068" e_stop="36781"/>
          <exon e_start="36695" e_stop="36689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCTGTAAGTTGTTGATCTCGTGTAATAGTTGTATGTTTGTCTTAATTAAGCTTACTATCAATAGACGAATTCTGGATTTGAAGTGTATGGATTTCAACTACGCGTCCTCAAGTTAATATACTTCAGCAACTGAATTCACAGTCATATATAGAGTTTAAACGGAAGGTTGTGGATAAGAGGCTAGATCCGCCCCTGCTTACTATAGTCATTAGTTGTGTAATGCCTATAGTTTCATAGAGAATCGTGAACCCACAAGCTTATTCAATTGGATTTAACTTGTGTACACGGACAGGTTAATGTCACATTGGTGATGTAAAAGAAAACTATACACCGTTAGTAACTTGGAGTTAACTTTACATTTTAACTAGGCCTAGTTTAGAGTGAGTAGCCACTGGACTGACACCTAGTAAGAGTGAGTTCCTGAGAAAAGCTAAGGCATCTAATTAAAACTTGAGTGCGTGAGGAAAGACTATAATGGGCTTTTTTTATTAGATTTTTTCATCTTGTGGATATTCTAGTAGTTTCTTGGAATGGCAAGCTGCAAGCATGAGTTCTTTCAACCCTTACTTGGGAGTCGCTTGGATTTCAGGTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAGGTAACTCTATTTCTCTTCCTGAGATTGTTCGTGTTTGATCAAGTATGTGTGTCCTTCATTTCTGTTTTTTCTTTTCATTATGTGGATAGAATATTGATTTAATGTGTGATGAATGGATAATTTCTGTTTGCAGTACTATCTAAGAACAGCAACCTGTAAATTTGGTGCATCATGCAAGTTCCACCATCCAAGAAACTTAGGTGGATCGTTGAGCAATATATCACTAAATGTTTATGGATACCCATTACATCCGGTAATTGATCTGTTGTGTCGTATCATGTATGTATGCGTTTGTGTTTTCTACCAATAAGGTTATCTAAGATCTCTTGAACTTCATCAATTGCAACAGGAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTATCAGCGCCAGTGACTGCACGTCCATTTTATCCAACATCGCCTTCTCTTCCTGTTCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCGGTAATGATAGAGATATTCTCTCAATCAACATTCTGATATGACTTAAATAATAATCTTATGGGGTGATTAATTTGCTTTTTTGCAGGGACCAG</genome_strand>
        <mrna_strand>TCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAG.....................................................................................................................................TACTATCTAAGAACAGCAACCTGTAAATTTGGTGCATCATGCAAGTTCCACCATCCAAGAAACTTAGGTGGATCGTTGAGCAATATATCACTAAATGTTTATGGATACCCATTACATCCG................................................................................................GAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTATCAGCGCCAGTGACTGCACGTCCATTTTATCCAACATCGCCTTCTCTTCCTGTTCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG.....................................................................................GGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554207" ref_strand="+" ref_description="SGN-E554207 [cTSC-3-J1]">
      <seq>gagaaaacaccaaaaacactcactcactctgtgttttactctgaactcataatctacacacaaattgatttttttttctgtacatatatatacacgatctactttttttcatcagtttaggtttttttttttggttgattcttccagtttttgttagctgaagctaagcaaattcaggtaaaaatggagttatacggggggtcacactccgatcgacagtcggaatgggttcctgttggacccgagaccggtcttgaaaaatcaatgaggaggttggggttgtggaggagggaaccatacccggaaaggtccgggacatcgaactgttctttctatatgcgtacagggtcttggggatatggggctaaatgccggtataatcatcctcctgatcgtagctctgttggtgctgtgctgttggaaagtagtgaatatccaaaacgaataggagagcctacatgccagtactatctaaaaacagcaacctgtaaatttggggcatcatgcaagttccaccatccaaaaaacttagggggatcgttgagcaatatatcactaaaggtttatggatacccattacatccggaggaaagaaaatgctcctattatttgaaaacggggcaatgcaaatttggtataacatgtaaattccatcatcctgaccatgctgaggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39100" stop="36678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38800" g_stop="38542" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38541" i_stop="38210" i_length="332">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38209" g_stop="38067" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="402" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38066" i_stop="37481" i_length="586">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37480" g_stop="37418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="465" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37417" i_stop="37285" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37284" g_stop="37165" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="585" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37164" i_stop="37069" i_length="96">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37068" g_stop="36978" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="676" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E554207" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38800" e_stop="38542"/>
          <exon e_start="38209" e_stop="38067"/>
          <exon e_start="37480" e_stop="37418"/>
          <exon e_start="37284" e_stop="37165"/>
          <exon e_start="37068" e_stop="36978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAGGTAGGTTTTCATATAAACTAAATTTAATAATTTTTTTTTGATAAATTTTTAAATATAATGAGAATATTCTGGCCAACAAGATGAAATTTCTAGTAGCTAATGGATTGAGTTACTTAGATTCCCGGCATGGTCATTGCACCAGCATGGCAGAGAAATTAAAAAAAAAAAATTAAAAAAATACAGTTTTTATCTTTTCATTTGTTCATTTCATTGAAAGGAACAACTTTCCATTTGTATTTTTGGTATGATGAATTTGAATTTTGGGTTGATTTTTTTAATTTTTTTTTAGGGTTTTTGATGACTCAAATGAGTGTTTTTTTTTGACAATGTAGAATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCTGTAAGTTGTTGATCTCGTGTAATAGTTGTATGTTTGTCTTAATTAAGCTTACTATCAATAGACGAATTCTGGATTTGAAGTGTATGGATTTCAACTACGCGTCCTCAAGTTAATATACTTCAGCAACTGAATTCACAGTCATATATAGAGTTTAAACGGAAGGTTGTGGATAAGAGGCTAGATCCGCCCCTGCTTACTATAGTCATTAGTTGTGTAATGCCTATAGTTTCATAGAGAATCGTGAACCCACAAGCTTATTCAATTGGATTTAACTTGTGTACACGGACAGGTTAATGTCACATTGGTGATGTAAAAGAAAACTATACACCGTTAGTAACTTGGAGTTAACTTTACATTTTAACTAGGCCTAGTTTAGAGTGAGTAGCCACTGGACTGACACCTAGTAAGAGTGAGTTCCTGAGAAAAGCTAAGGCATCTAATTAAAACTTGAGTGCGTGAGGAAAGACTATAATGGGCTTTTTTTATTAGATTTTTTCATCTTGTGGATATTCTAGTAGTTTCTTGGAATGGCAAGCTGCAAGCATGAGTTCTTTCAACCCTTACTTGGGAGTCGCTTGGATTTCAGGTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAGGTAACTCTATTTCTCTTCCTGAGATTGTTCGTGTTTGATCAAGTATGTGTGTCCTTCATTTCTGTTTTTTCTTTTCATTATGTGGATAGAATATTGATTTAATGTGTGATGAATGGATAATTTCTGTTTGCAGTACTATCTAAGAACAGCAACCTGTAAATTTGGTGCATCATGCAAGTTCCACCATCCAAGAAACTTAGGTGGATCGTTGAGCAATATATCACTAAATGTTTATGGATACCCATTACATCCGGTAATTGATCTGTTGTGTCGTATCATGTATGTATGCGTTTGTGTTTTCTACCAATAAGGTTATCTAAGATCTCTTGAACTTCATCAATTGCAACAGGAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTAT</genome_strand>
        <mrna_strand>GAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAAATTCAGGTAAAAATGGAGTTATACGGGGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAA............................................................................................................................................................................................................................................................................................................................................AATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGGGGATATGGGGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAAAACGAATAGGAGAGCCTACATGCCAG.....................................................................................................................................TACTATCTAAAAACAGCAACCTGTAAATTTGGGGCATCATGCAAGTTCCACCATCCAAAAAACTTAGGGGGATCGTTGAGCAATATATCACTAAAGGTTTATGGATACCCATTACATCCG................................................................................................GAGGAAAGAAAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331470" ref_strand="+" ref_description="SGN-E331470 [cTOD-9-E11]">
      <seq>ttcacagatctgaactcactgtacaaacagtctctttctgggtactggtagagagagaaaacaccaaaaacactcactcactctgtgttttactctgaactcataatctacacacaaattgatttttttttctgtacatatatatacacgatctactttttttcatcagtttaggtttttttttttggttgattcttccagtttttgttagctgaagctaagcagattcaggtaaaaatggagttatacggtgggtcacactccgatcgacagtcggaatgggttcctgttggacccgagaccggtcttgaagaatcaatgaggaggttggggttgtggaggagggaaccatacccggaaaggtccgggacatcgaactgttctttctatatgcgtacagggtcttgtggatatggtgctaaatgccggtataatcatcctcctgatcgtagctctgttggtgctgtgctgttggaaagtagtgaatatccagaacgaataggagagcctacatgccagtactatctaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39154" stop="37108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38854" g_stop="38542" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38541" i_stop="38210" i_length="332">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38209" g_stop="38067" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="456" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38066" i_stop="37481" i_length="586">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37480" g_stop="37418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="519" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37417" i_stop="37285" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37284" g_stop="37271" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="533" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E331470" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38854" e_stop="38542"/>
          <exon e_start="38209" e_stop="38067"/>
          <exon e_start="37480" e_stop="37418"/>
          <exon e_start="37284" e_stop="37271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGAGCTGAACTCACTGTACAAACAGTCTCTTTCTCTCTACTTCTAGAGAGAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAGGTAGGTTTTCATATAAACTAAATTTAATAATTTTTTTTTGATAAATTTTTAAATATAATGAGAATATTCTGGCCAACAAGATGAAATTTCTAGTAGCTAATGGATTGAGTTACTTAGATTCCCGGCATGGTCATTGCACCAGCATGGCAGAGAAATTAAAAAAAAAAAATTAAAAAAATACAGTTTTTATCTTTTCATTTGTTCATTTCATTGAAAGGAACAACTTTCCATTTGTATTTTTGGTATGATGAATTTGAATTTTGGGTTGATTTTTTTAATTTTTTTTTAGGGTTTTTGATGACTCAAATGAGTGTTTTTTTTTGACAATGTAGAATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCTGTAAGTTGTTGATCTCGTGTAATAGTTGTATGTTTGTCTTAATTAAGCTTACTATCAATAGACGAATTCTGGATTTGAAGTGTATGGATTTCAACTACGCGTCCTCAAGTTAATATACTTCAGCAACTGAATTCACAGTCATATATAGAGTTTAAACGGAAGGTTGTGGATAAGAGGCTAGATCCGCCCCTGCTTACTATAGTCATTAGTTGTGTAATGCCTATAGTTTCATAGAGAATCGTGAACCCACAAGCTTATTCAATTGGATTTAACTTGTGTACACGGACAGGTTAATGTCACATTGGTGATGTAAAAGAAAACTATACACCGTTAGTAACTTGGAGTTAACTTTACATTTTAACTAGGCCTAGTTTAGAGTGAGTAGCCACTGGACTGACACCTAGTAAGAGTGAGTTCCTGAGAAAAGCTAAGGCATCTAATTAAAACTTGAGTGCGTGAGGAAAGACTATAATGGGCTTTTTTTATTAGATTTTTTCATCTTGTGGATATTCTAGTAGTTTCTTGGAATGGCAAGCTGCAAGCATGAGTTCTTTCAACCCTTACTTGGGAGTCGCTTGGATTTCAGGTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAGGTAACTCTATTTCTCTTCCTGAGATTGTTCGTGTTTGATCAAGTATGTGTGTCCTTCATTTCTGTTTTTTCTTTTCATTATGTGGATAGAATATTGATTTAATGTGTGATGAATGGATAATTTCTGTTTGCAGTACTATCTAAGAAC</genome_strand>
        <mrna_strand>TTCACAGATCTGAACTCACTGTACAAACAGTCTCTTTCTGGGTACTGGTAGAGAGAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAG............................................................................................................................................................................................................................................................................................................................................AATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAG.....................................................................................................................................TACTATCTAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331337" ref_strand="+" ref_description="SGN-E331337 [cTOD-9-E9]">
      <seq>ttcacagagctgaactcactgtacaaacagtctctttctctctacttctagagagagaaaacaccaaaaacactcactcactctgtgttttactctgaactcataatctacacacaaattgatttttttttctgtacatatatatacacgatctactttttttcatcagtttaggtttttttttttggttgattcttccagtttttgttagctgaagctaagcagattcaggtaaaaatggagttatacggtgggtcacactccgatcgacagtcggaatgggttcctgttggacccgagaccggtcttgaagaatcaatgaggaggttggggttgtggaggagggaaccatacccggaaaggtccgggacatcgaactgttctttctatatgcgtacagggtcttgtggatatggtgctaaatgccggtataatcatcctcctgatcgtagctctgttggtgctgtgctgttggaaagtagtgaatatccagaacgaataggagagcctacatgccagtactatctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39154" stop="37108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38854" g_stop="38542" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38541" i_stop="38210" i_length="332">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38209" g_stop="38067" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="456" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38066" i_stop="37481" i_length="586">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37480" g_stop="37418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="519" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37417" i_stop="37285" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37284" g_stop="37274" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="530" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E331337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38854" e_stop="38542"/>
          <exon e_start="38209" e_stop="38067"/>
          <exon e_start="37480" e_stop="37418"/>
          <exon e_start="37284" e_stop="37274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGAGCTGAACTCACTGTACAAACAGTCTCTTTCTCTCTACTTCTAGAGAGAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAGGTAGGTTTTCATATAAACTAAATTTAATAATTTTTTTTTGATAAATTTTTAAATATAATGAGAATATTCTGGCCAACAAGATGAAATTTCTAGTAGCTAATGGATTGAGTTACTTAGATTCCCGGCATGGTCATTGCACCAGCATGGCAGAGAAATTAAAAAAAAAAAATTAAAAAAATACAGTTTTTATCTTTTCATTTGTTCATTTCATTGAAAGGAACAACTTTCCATTTGTATTTTTGGTATGATGAATTTGAATTTTGGGTTGATTTTTTTAATTTTTTTTTAGGGTTTTTGATGACTCAAATGAGTGTTTTTTTTTGACAATGTAGAATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCTGTAAGTTGTTGATCTCGTGTAATAGTTGTATGTTTGTCTTAATTAAGCTTACTATCAATAGACGAATTCTGGATTTGAAGTGTATGGATTTCAACTACGCGTCCTCAAGTTAATATACTTCAGCAACTGAATTCACAGTCATATATAGAGTTTAAACGGAAGGTTGTGGATAAGAGGCTAGATCCGCCCCTGCTTACTATAGTCATTAGTTGTGTAATGCCTATAGTTTCATAGAGAATCGTGAACCCACAAGCTTATTCAATTGGATTTAACTTGTGTACACGGACAGGTTAATGTCACATTGGTGATGTAAAAGAAAACTATACACCGTTAGTAACTTGGAGTTAACTTTACATTTTAACTAGGCCTAGTTTAGAGTGAGTAGCCACTGGACTGACACCTAGTAAGAGTGAGTTCCTGAGAAAAGCTAAGGCATCTAATTAAAACTTGAGTGCGTGAGGAAAGACTATAATGGGCTTTTTTTATTAGATTTTTTCATCTTGTGGATATTCTAGTAGTTTCTTGGAATGGCAAGCTGCAAGCATGAGTTCTTTCAACCCTTACTTGGGAGTCGCTTGGATTTCAGGTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAGGTAACTCTATTTCTCTTCCTGAGATTGTTCGTGTTTGATCAAGTATGTGTGTCCTTCATTTCTGTTTTTTCTTTTCATTATGTGGATAGAATATTGATTTAATGTGTGATGAATGGATAATTTCTGTTTGCAGTACTATCTAAG</genome_strand>
        <mrna_strand>TTCACAGAGCTGAACTCACTGTACAAACAGTCTCTTTCTCTCTACTTCTAGAGAGAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAG............................................................................................................................................................................................................................................................................................................................................AATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAG.....................................................................................................................................TACTATCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="-" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>agtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53655" stop="54883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53955" g_stop="54389" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54390" i_stop="54541" i_length="152">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54542" g_stop="54583" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="481" r_length="43" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53955" e_stop="54389"/>
          <exon e_start="54542" e_stop="54583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGCTAGAAGCATTAGCTCA-CCTG-ATATCCGGAGTAATGAAGACTTGGCTAGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACCCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATC-A-ATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAGCATCTTTCAAGATTCATCATCTTTATTTCTCTTGTGTCGGTACGTGACTCTCCGCTCCCTC-ATATTCCTTAATCCTCTTGTGTCGGTACGTGACTCTCCGCTCCCTCATATTCCTTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCCCCTAAATCTACGTATCGGTTCGTGACACCCGATTCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTACGTGTCGGTTCGTG</genome_strand>
        <mrna_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGT-AAGACT-GGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG........................................................................................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="-" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>atcaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53898" stop="54884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54196" g_stop="54389" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54390" i_stop="54541" i_length="152">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54542" g_stop="54584" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="239" r_length="44" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54196" e_stop="54389"/>
          <exon e_start="54542" e_stop="54584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAGCATCTTTCAAGATTCATCATCTTTATTTCTCTTGTGTCGGTACGTGACTCTCCGCTCCCTC-ATATTCCTTAATCCTCTTGTGTCGGTACGTGACTCTCCGCTCCCTCATATTCCTTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCCCCTAAATCTACGTATCGGTTCGTGACACCCGATTCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTACGTGTCGGTTCGTGA</genome_strand>
        <mrna_strand>ATCAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG........................................................................................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 [cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55853" stop="54596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55553" g_stop="54896" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55553" e_stop="54896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCAAAGAGTCTTCAGTAAAAATTCAGTCTCTGAACCTTGCGACGACCTGTAGGACGGACCGTCGCAGGCACGACGGGCCGTCGCAGATTGCGT-AATCCCAGTTTGGGTCGGATTTCTTATTACGTTTTAAGGGACGTTTTTTACTATTCCTGTTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGCCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGATTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGG-AAAAACACAAAGCTTGGGAAATTGCTTTCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55317" stop="56216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55617" g_stop="55942" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55617" e_stop="55942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTTTATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCATTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAAAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTG--TTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55317" stop="56216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55617" g_stop="55911" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55617" e_stop="55911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTTTATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCATTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTG--TTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55318" stop="56368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55618" g_stop="56068" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55618" e_stop="56068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTTTATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCATTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAAAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTGAGAGAGAGACG-CTGGCTAATTTTAGCTAACGTTTGCTATGGAGTACAATTAAATCAAATCATAGCTATTCCATTTATTTTAGGTTGTTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTG--TTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358347" ref_strand="+" ref_description="SGN-E358347 [cLHT-28-F7]">
      <seq>gcaataccaaactacttttttaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcttcgttttcatcttcttcgccttctaggaaatcatctgaatttcgaattttaacgaaatttccttcatttactttttcttctctgtctccatcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcactggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgatggcagcggcggattttgttgaggttgaaggcgatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58260" stop="59360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58560" g_stop="59060" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E358347" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58560" e_stop="59060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTG</genome_strand>
        <mrna_strand>GCAATACCAAACTACTT--TTTT-AAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCTTCGTTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAATTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTCTGTCTCCATCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACTGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGATGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCGATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264936" ref_strand="+" ref_description="SGN-E264936 [cLEI-10-D9]">
      <seq>caataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58261" stop="59803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58561" g_stop="59092" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59503" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="575" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E264936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58561" e_stop="59092"/>
          <exon e_start="59461" e_stop="59503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTG</genome_strand>
        <mrna_strand>CAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395533" ref_strand="+" ref_description="SGN-E395533 [TUS-43-E6]">
      <seq>caataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58261" stop="59341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58561" g_stop="59041" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E395533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58561" e_stop="59041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCA</genome_strand>
        <mrna_strand>CAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396941" ref_strand="+" ref_description="SGN-E396941 [TUS-44-F5]">
      <seq>ccctttaaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgattgttttttgtctgcaccggtttctacttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58268" stop="59184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58561" g_stop="58884" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E396941" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58561" e_stop="58884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTAC</genome_strand>
        <mrna_strand>CCCTTTAAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGATTGTTTTTTGTCTGCACCGGTTTCTACTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214055" ref_strand="+" ref_description="SGN-E214055 [cLEC-80-I17]">
      <seq>aataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctgcagagtttgcagcagagcacttgaataagaacattatggatgaattagtaaggaggaatgatgaagatgttgtggnagtgctgaaaaatgtttatttaaagacagataccgaattcctcagtgaagaatttgggggtggatcgtgttgcgtaacagcattgatcagagacggtgatttagttgtatctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58262" stop="59996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58562" g_stop="59092" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59696" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="767" r_length="236" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E214055" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58562" e_stop="59092"/>
          <exon e_start="59461" e_stop="59696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGC</genome_strand>
        <mrna_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGNAGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207344" ref_strand="+" ref_description="SGN-E207344 [cLEC-36-C19]">
      <seq>aataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctgcagagtttgcagcagagcacttgaataagaacattatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58262" stop="59844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58562" g_stop="59092" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59544" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="615" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E207344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58562" e_stop="59092"/>
          <exon e_start="59461" e_stop="59544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGAT</genome_strand>
        <mrna_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203846" ref_strand="+" ref_description="SGN-E203846 [cLEC-17-M19]">
      <seq>aataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58262" stop="59284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58562" g_stop="58984" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E203846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58562" e_stop="58984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTT</genome_strand>
        <mrna_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204645" ref_strand="+" ref_description="SGN-E204645 [cLEC-14-I6]">
      <seq>aataccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58262" stop="59253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58562" g_stop="58953" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E204645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58562" e_stop="58953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTT</genome_strand>
        <mrna_strand>AATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206851" ref_strand="+" ref_description="SGN-E206851 [cLEC-33-G18]">
      <seq>accaaactactttgttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccgggattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgacatttgcatcttcttcgccttctaggagatcatctgaagttctaactgtaacgaaatttccttcatttacttcttcttctttgtctccgccttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttgacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgaccgtttcgaagaggaagagacctgcttgattggatattccggtcgtttcgacgaattttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58265" stop="59250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58565" g_stop="58950" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E206851" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58565" e_stop="58950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAA</genome_strand>
        <mrna_strand>ACCAAACTACTTTGTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGGATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGACATTTGCATCTTCTTCGCCTTCTAGGAGATCATCTGAAGTTCTAACTGTAACGAAATTTCCTTCATTTACTTCTTCTTCTTTGTCTCCGCCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTGACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACCGTTTCGAAGAGGAAGAGACCTGCTTGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304280" ref_strand="+" ref_description="SGN-E304280 [cLEX-12-E3]">
      <seq>ccaaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctgcagagtttgcagcagagcacttgaataagaacattatggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58266" stop="59847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58566" g_stop="59092" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59547" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="614" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E304280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58566" e_stop="59092"/>
          <exon e_start="59461" e_stop="59547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAA</genome_strand>
        <mrna_strand>CCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209692" ref_strand="+" ref_description="SGN-E209692 [cLEC-54-P20]">
      <seq>caaactacttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccgggattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggaagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58267" stop="59320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58567" g_stop="59020" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E209692" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58567" e_stop="59020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGT</genome_strand>
        <mrna_strand>CAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGGATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGAAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284958" ref_strand="+" ref_description="SGN-E284958 [cLER-19-E3]">
      <seq>aaactacttttttttaaaaaaattaaagcggtgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggcttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58268" stop="59251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58568" g_stop="58951" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E284958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58568" e_stop="58951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAAT</genome_strand>
        <mrna_strand>AAACTACTTTTTTTTAAAAAAATTAAAGCGGTGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGCTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208278" ref_strand="+" ref_description="SGN-E208278 [cLEC-37-F24]">
      <seq>ttttttttaaaaaaattaaagcaatgtcttgtaccgtcgctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58275" stop="59311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58575" g_stop="59011" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E208278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58575" e_stop="59011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCT</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209321" ref_strand="+" ref_description="SGN-E209321 [cLEC-53-F8]">
      <seq>gctattccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattatgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcataacagggtatttttggtgtatttgatggacatggaggacctaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58313" stop="59803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58613" g_stop="59092" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59503" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="523" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E209321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58613" e_stop="59092"/>
          <exon e_start="59461" e_stop="59503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTG</genome_strand>
        <mrna_strand>GCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTATGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCATAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207450" ref_strand="+" ref_description="SGN-E207450 [cLEC-36-E9]">
      <seq>ccaaattcaccggtattctcgccggcgactaggattccggtgactaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctgcagagtttgcagcagagcacttgaataagaacattatggatgaattagtaaggaggaatgatgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58319" stop="59872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58619" g_stop="59092" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59572" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="586" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E207450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58619" e_stop="59092"/>
          <exon e_start="59461" e_stop="59572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATG</genome_strand>
        <mrna_strand>CCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368142" ref_strand="+" ref_description="SGN-E368142 [TUS-22-E4]">
      <seq>ctaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgatggacatggaggacctaaagctgcagagtttgcagcagagcacttgaataagaacattatggatgaattagtaaggaggaatgatgaagatgttgtggaggtgctgaaaaatgtttatttaaagacagataccgaattcctcagtgaagaatttgggggtggatcgtgttgcgtaacagcattgatcagagacggtgatttagttgtatctaatgctggtgattgtcgcgctgttgttagcagaggtgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58362" stop="60034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58662" g_stop="59092" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59734" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="705" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E368142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58662" e_stop="59092"/>
          <exon e_start="59461" e_stop="59734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTG</genome_strand>
        <mrna_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238606" ref_strand="+" ref_description="SGN-E238606 [cLED-17-J20]">
      <seq>ctaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggatattccggtcgtttcgacgaattttggaaattttccggaaactccgacggcagcggcggattttgttgaggttgaaggcaatgaatattctgtttgttgtaaacgtggaaggagaggtgcaatggaggatcgttattctgcacttgtcaatttacaaggagattcaaaacagggtatttttggtgtatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58362" stop="59781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58662" g_stop="59092" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59461" g_stop="59481" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="452" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E238606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58662" e_stop="59092"/>
          <exon e_start="59461" e_stop="59481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAGGTATAATCAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTTAATTTGAGAAATGCAGGTTAAGACTACATACAATAAGTCCTCGTGATCTGGTACATAGCGAGAACTTAGTGCATCAGACTATTTGTGAATGGTTGAAATTGACGAAGGGATTAATTGTTTCATTCTGATTTTTTTACTGTAAAAAATGCATATTGTTCCGCCAATTTTAGTTTAGATTTGAGAAATGCATGTTAAAACTACGTAAAATAAATTCTTGTGATCTGGTGCATAGCGAGAACTTAGTGCATCAGTGCTATTTGTGAATGGTTGAAATTGACAAAGGGATTACTTGTTTCAGGGTATTTTTGGTGTATTTGAT</genome_strand>
        <mrna_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTGGTGTATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236150" ref_strand="+" ref_description="SGN-E236150 [cLED-16-H6]">
      <seq>ctaattctctcttatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttcgaagaggaagagacctgctagattggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58362" stop="59222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58662" g_stop="58922" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E236150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58662" e_stop="58922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATA</genome_strand>
        <mrna_strand>CTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210128" ref_strand="+" ref_description="SGN-E210128 [cLEC-40-J23]">
      <seq>tatgtaaatcggcgtcattttcatcttcttcgccttctaggaaatcatctgaatttcgaactttaacgaaatttccttcatttactttttcttctttgtctccgtcttcgcaattgaaaattcttctgattgagaaatcttcacaggcaacgattagcgttaacagaaattcttctgagtgttcaacgtctgcaccggtttctacttctacgacggtttctaagaggaagagacccgctagattggatattccggtcgtttcgacgaattttggaaatttttcggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58374" stop="59262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58674" g_stop="58962" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E210128" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58674" e_stop="58962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAAC</genome_strand>
        <mrna_strand>TATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCTAAGAGGAAGAGACCCGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTTCGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711587" ref_strand="+" ref_description="SGN-E711587 [FB02BF07]">
      <seq>cgtataaggaaggaggaatgatgaagatgttgtggaggtgccttaaaagtttatttaaagaaagatagngaattcntcagtgaagaatttgggggtggatcgtgttgtgtaanagccttgatcagagacggtgatttagttgtatctaatgatggtgattgtcgcgctgttgttagcagaggtgggattgcagaagcaatcacctcagatcacaagccttcaagaaaagacgagaaagacagaattgagagtttgggtggttatgtagattgttctaatggtgtttggagaatccagggatcgcttgctgtatcgagaggtataggagatcgttatcttaaacaatgggtgatcgcagaacctgagactacagtcgttgaacttaatcctgagttggagttcttagtccttgcatctgacggtttatgggataaagtcagcaatcaggaagtagttgatgctgctaggcctttgtgctgcacaggcatcggtaagccacaaccattattggcctctaaaaagcttatcgatcttgctgtttcacgaggttctgttaatgatatatgtgtgatgataattcaactgcaacaattttggtgaatgtatagaaactgtttgagttgctggatgaatatttcgttctcatttaacttccgcggacaataatggattgaattagatactggagacctatgtatatatgaagattgcttctatgactgaatagtttactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59245" stop="60664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59544" g_stop="59799" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59800" i_stop="59882" i_length="83">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59883" g_stop="60364" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="737" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E711587" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59544" e_stop="59799"/>
          <exon e_start="59883" e_stop="60364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTGGTGAGCAACTTGACAATGAATTCGCTTATCAGCTTAACATGTCTTACTTTTTACTAATCGTATCACGCTTTATTGTTGTGTAGGGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCTTGCTGTATCGAGAGGTATAGGAGATCGTTATCTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTCTTAGTCCTTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATG</genome_strand>
        <mrna_strand>CGTATAAGGAAGGAGGAATGATGAAGATGTTGTGGAGGTGCCTTAAAA-GTTTATTTAAAGAAAGATAGNGAATTCNTCAGTGAAGAATTTGGGGGTGGATCGTGTTGTGTAANAGCCTTGATCAGAGACGGTGATTTAGTTGTATCTAATGATGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTG...................................................................................GGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCTTGCTGTATCGAGAGGTATAGGAGATCGTTATCTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTCTTAGTCCTTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368141" ref_strand="+" ref_description="SGN-E368141 [TUS-22-E4](-)">
      <seq>aatgctggtgattgtcgcgctgttgttagcagaggtgggattgcagaagcaatcacctcagatcacaagccttcaagaaaagacgagaaagacagaattgagagtttgggtggttatgtagattgttctaatggtgtttggagaatccagggatcgcctgctgtatcgaaaggtataggagatcgttattttaaacaatgggtgatcgcagaacctgagactacagtcgttgaacttaatcctgagttggagtttttagtccctgcatctgacggtttatgggataaagtcagcaatcaggaagtagttgatgctgctaggcctttgtgctgcccaggcatcggtaagccccaacccttattggcctctaaaaagcttatcgatcttgctgtttcccgaggttctgttaatgaaatatgtgtgatgataattcaactgcaacaattttggtgaatgtataaaaactgtttgagttgctggatgaatatttcgttttcctttaacttccccggccaataatggattgaattaaatactggagacctatgtatatatgaagattgcttctatgactgaatagtttactcatgagatttaaactgagacgcgggcgataatgggaattgaatatgcaatgtctatatgaatttccccgtttttgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59392" stop="75267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59692" g_stop="59799" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59800" i_stop="59882" i_length="83">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59883" g_stop="60438" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="664" r_length="556" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60439" i_stop="61735" i_length="1297">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61736" g_stop="61769" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="698" r_length="34" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E368141" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59692" e_stop="59799"/>
          <exon e_start="59883" e_stop="60438"/>
          <exon e_start="61736" e_stop="61769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTGGTGAGCAACTTGACAATGAATTCGCTTATCAGCTTAACATGTCTTACTTTTTACTAATCGTATCACGCTTTATTGTTGTGTAGGGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCTTGCTGTATCGAGAGGTATAGGAGATCGTTATCTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTCTTAGTCCTTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATCTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCAGTTTTTGTTTATGGTTTATGATGAAATTTTCTTCTTTTCCTTTTCATTTGAACTTCACTGTTTCGAGAGGCTTAAAGATTGAATGATATTGATGTATAGTCTCTTAGGTTTTTTAGTAGTAGTTCATGAAATCTTGAATAATATTCCGTTTACGATGAACATACCAAATAAAAATGGACTGGTTATTTAGTTTTTATTCGTCATATCAATAGTGTTATTGGGGTAAATATATATAAATCACCTTTAATTCTATGAAGTTTTACAGCTTAAAGGTTAAAAAAGTCAAAATATGAAATAACAAACAGATTAATCTGAAAATCAAACTTATATTCCAATATTTAAACATATATTGGATTGTATTGGAATTATAATTTCTTAAACCAAAAATTCAATTCGAATGGCTTGAACGCCTGCATGGGCTAATCAAAAGTTCAATTCATACCCTCTTAGATTTCTAACTTATATTATAGAATTTGATTAATATAAACTTCCAAAATTAATTGTTCATGTATTTTGAAAACCCTTTATTACTTCTTTAATTAAGGAATTCAGCTACAACCAATTAATTCAAATAAATAAAATATGTATTTTGATTCTAAAATTTGGCAGATATGTGTACCTCGCAAATTTAAACTCGTGTATCCTAAGTAAGAAATATGATTAGAGAAAGTAATGTTTGAAAATATCGAGAATCTTAGTAATTAAACTTAACTAATAAGATTTATGTAGTTCATTTTTTTTAATCTCATCAAGTATTTGATATTCATATTAAAGTTCAACTATTTTACACTTATGCCGTGTAACCTTTCATTCCAGGGCTATTAATTTTTTTTCTTCATATTCAATAATCGAACCGACAAGAAGATAAAAGAAGAGATTTGGTTGGTGGGGGGATCGGGCTATTTGGAACCTTCAATTATGGGCTCCTATTTGGTGAATTATACTTCTAATTATTTGTGCATTATTAATACGATTCTCTTTTATTTGTCTCACTCTTATACATCTTCAACATATTAGTGCACTAATTAATATAGTGAATTAGTAATCAATTCTTAATTATGCATATTCTATGCTTTATTCGTTTCTTATACTACTACTAAATTCAGTTCATCTTATTATTTTACAAGAAAAGAGATGTAACTACTGACAAATTAGATTATTATTTTTTGGCTATGTTGTTTGGATTTTTTTACAAGTCTTTTGTCTACATATTAACTATTTTGTGAGCATTTGATGAGGTGTACTTTTCATCAAGTATGAATTCTTTTATTCTTTACTTTTCTTGACTTTTTAGACATTCATGCATCTAAATAAAAAAAATAAAATATAAGCATTTTAAAA</genome_strand>
        <mrna_strand>AATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTG...................................................................................GGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCCTGCTGTATCGAAAGGTATAGGAGATCGTTATTTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTTTTAGTCCCTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCCCAGGCATCGGTAAGCCCCAACCCTTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCCCGAGGTTCTGTTAATGAAATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAAAAACTGTTTGAGTTGCTGGATGAATATTTCGTTTTCCTTTAACTTCCCCGGCCAATAATGGATTGAATTAAATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATTTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCCGTTTTTGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395532" ref_strand="+" ref_description="SGN-E395532 [TUS-43-E6](-)">
      <seq>gtgcacaggcatcgctaacccacaaccattattggcctctaaaaagcttatcgatcttgctgtttcacgaggttctgttaatgatatatgtgtgatgataattcaactgcaacaattttggtgaatgtatagaaactgtttgagttgctggatgaatatttcgttctcatttaacttccgcggacaataatggattgaattagatactggagacctatgtatatatgaagattgcttctatgactgaatagtttactcatgagatctaaactgagacgcgggcgataatgggaattgaatatgcaatgtctatatgaatttcccagtttttgtttatggtttatgatgaaattttcttcttttccttttcatttgaacttcactgtttcgagaggcttaaagattgaatgatattgatgtatagtctcttaggttttttagtagtagttcatgaaatcttgaataatattccgtttacgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59805" stop="60891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60104" g_stop="60594" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E395532" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60104" e_stop="60594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATCTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCAGTTTTTGTTTATGGTTTATGATGAAATTTTCTTCTTTTCCTTTTCATTTGAACTTCACTGTTTCGAGAGGCTTAAAGATTGAATGATATTGATGTATAGTCTCTTAGGTTTTTTAGTAGTAGTTCATGAAATCTTGAATAATATTCCGTTTACGATGAACATACCA</genome_strand>
        <mrna_strand>GTGCACAGGCATCGCTAACCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATCTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCAGTTTTTGTTTATGGTTTATGATGAAATTTTCTTCTTTTCCTTTTCATTTGAACTTCACTGTTTCGAGAGGCTTAAAGATTGAATGATATTGATGTATAGTCTCTTAGGTTTTTTAGTAGTAGTTCATGAAATCTTGAATAATATTCCGTTTACGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395154" ref_strand="+" ref_description="SGN-E395154 [TUS-40-J22](-)">
      <seq>gtgaaattattcacctttaaagggaaataagaaaaagaaagtacttaatgaattaggaggatatataatattaaagaaatttaaaggttaaaataacaaacgaataaaagttaatggctcaatcgactaatgacactagtcatgtagatcaaggtcatggtatagtatatgatcaatgttgtaatagtttgtaagtatatgtattttgtgagatattaattgatcctaattattagtcatttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62095" stop="62940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62394" g_stop="62648" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E395154" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62394" e_stop="62648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NTGAAATTATTCACCTTTAAAGGGAAATAAGAAAAAGAAAGTACTTAATGAATTAGGAGGATATATAATATTAAAGAAATTTAAAGGTTAAAATAACAAACGAATAAAAGTTAATGGCTCAATCGACTAATGACACTAGTCATGTAGATCAAGGTCATGGTATAGTATATGATCAATGTTGTAATAGTTTGTGATTATATGTATTTTGTGAGATATTAATTGATCCTAATTATTAGTCATTTGATAATTACCTAT</genome_strand>
        <mrna_strand>GTGAAATTATTCACCTTTAAAGGGAAATAAGAAAAAGAAAGTACTTAATGAATTAGGAGGATATATAATATTAAAGAAATTTAAAGGTTAAAATAACAAACGAATAAAAGTTAATGGCTCAATCGACTAATGACACTAGTCATGTAGATCAAGGTCATGGTATAGTATATGATCAATGTTGTAATAGTTTGTAAGTATATGTATTTTGTGAGATATTAATTGATCCTAATTATTAGTCATTTGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263180" ref_strand="+" ref_description="SGN-E263180 [cLEG-62-O10]">
      <seq>gaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgtttcgtcgattatttcgtttcttgttggatgtagaaagttcgttttcaatctgaatagtccgttatgttgggaggtgactgaaaatccccatccacacacacactcacaatgtcatagtcattgcgtatgttggcttcatcaattttagcagggtgtcacaaagagcccagaattggcattgtgacttatagttctctggctgtcaattgatttcagtatttggcttttttcgggttctgtggttgtaccctanggctatcagaaacctaacctctctacttttgtaggataatattagtttgcatcctgccctctccagactcaacttatggcattgtactctaaattatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76010" stop="74835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75710" g_stop="75135" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E263180" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75710" e_stop="75135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</genome_strand>
        <mrna_strand>GAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTANGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391841" ref_strand="+" ref_description="SGN-E391841 [TUS-24-P15]">
      <seq>gaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77884" stop="75190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77584" g_stop="77489" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77488" i_stop="76768" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76767" g_stop="76687" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="177" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76686" i_stop="76409" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76408" g_stop="76322" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76321" i_stop="75844" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75843" g_stop="75490" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="618" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E391841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77584" e_stop="77489"/>
          <exon e_start="76767" e_stop="76687"/>
          <exon e_start="76408" e_stop="76322"/>
          <exon e_start="75843" e_stop="75490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTT</genome_strand>
        <mrna_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247177" ref_strand="+" ref_description="SGN-E247177 [cLEF-46-D18]">
      <seq>aagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77883" stop="75236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77583" g_stop="77489" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77488" i_stop="76768" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76767" g_stop="76687" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="176" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76686" i_stop="76409" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76408" g_stop="76322" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76321" i_stop="75844" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75843" g_stop="75536" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="571" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E247177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77583" e_stop="77489"/>
          <exon e_start="76767" e_stop="76687"/>
          <exon e_start="76408" e_stop="76322"/>
          <exon e_start="75843" e_stop="75536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTC</genome_strand>
        <mrna_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701552" ref_strand="+" ref_description="SGN-E701552 [FA16BB12]">
      <seq>cttcatctaggactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagcattgttgtctagagtacatgatattgtacctcctacactggcttcagggtcaataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagcgaagactaccagaaggctgttttaaaggccaaggaacatatccttgctggggacattttccaaattgttcttagtcaacgttttgaaagacgaacctttgcagatccatttgaagtatacagagcactaagaatcgtaaatccaagtccttatatgacttatctacaggctcgggggtgtatacttgttgcttctagtcctgaaattcttactcgagtgaagaagaaaacagttaccaatcggcccctagcagggactattagaagaggtaagacacttgaggaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctggctgttggaaccgttagtggagcgcctaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79387" stop="76020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79087" g_stop="79037" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79036" i_stop="78366" i_length="671">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78365" g_stop="78250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="167" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78249" i_stop="78157" i_length="93">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78156" g_stop="77910" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="414" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77909" i_stop="77832" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77831" g_stop="77775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77774" i_stop="77642" i_length="133">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77641" g_stop="77489" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="624" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77488" i_stop="76768" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76767" g_stop="76687" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="705" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76686" i_stop="76409" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76408" g_stop="76322" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="792" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76321" i_stop="76041" i_length="281">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76040" g_stop="76036" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="797" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E701552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79087" e_stop="79037"/>
          <exon e_start="78365" e_stop="78250"/>
          <exon e_start="78156" e_stop="77910"/>
          <exon e_start="77831" e_stop="77775"/>
          <exon e_start="77641" e_stop="77489"/>
          <exon e_start="76767" e_stop="76687"/>
          <exon e_start="76408" e_stop="76322"/>
          <exon e_start="76040" e_stop="76036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAGGTATGCCTGTTTTCCTTGAAACTTTGACTCTTCAAATTCTATTTCCCTGGTTTCTCACGAAGGATATGTTCTGATCAGGCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAGGTAAATCAACTGATGTTCTCTATTCTAATTTGCAGATTGCATGTCGATTTCACCCCGAATTCCATCTGTCATCGTGTCTACCATTAACAACTTTGCTAATGATCTAAAACCGTTCGTTTTTTTTTTGGTCCAGAAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAG</genome_strand>
        <mrna_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCATTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCAATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG..............................................................................GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG.....................................................................................................................................AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGGCTGTTGGAACCGTTAGTGGAGCGCCTAAG.........................................................................................................................................................................................................................................................................................GTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268028" ref_strand="+" ref_description="SGN-E268028 [cLEI-15-B17]">
      <seq>gcaaaatagaacatgttgacaattatggatcaccttgggggaagcagaacatatgaatttgaggaagatccaataaccattcctagtatgattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaagactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagctttgttgtctagagtacatgatattgtacctcctacactggcttcagggtcgataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80609" stop="77778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80309" g_stop="80165" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80164" i_stop="79189" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79188" g_stop="79037" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="297" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79036" i_stop="78366" i_length="671">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78365" g_stop="78250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="413" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78249" i_stop="78157" i_length="93">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78156" g_stop="78078" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="492" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E268028" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80309" e_stop="80165"/>
          <exon e_start="79188" e_stop="79037"/>
          <exon e_start="78365" e_stop="78250"/>
          <exon e_start="78156" e_stop="78078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGC</genome_strand>
        <mrna_strand>GCAAAATAGAACATGTTGACAATTATGGATCACCTTGGGGGAAGCAGAACATATGAATTTGAGGAAGATCCAATAACCATTCCTAGTATGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAAGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719407" ref_strand="+" ref_description="SGN-E719407 [FC07DB01]">
      <seq>acctctgcaacatataaccgtcaaattccatttctcctcaaattttttcaaagctcaaatgctgtaaacactcatgaaaaccctagccgtatctcatcaccgaccggttatctccggcaccggtcaccgctcctccattttctccggtcacagggctacttcgctctctttctctaggtcccctgtatcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacaactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctctacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaaaatgatagggaagctccgagcttcttgttcgaatctgtacagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaaaaaaacatggtgacaattatggatcaccttgaaggaagcaaaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaaacattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtaaagaaaaaaaaactacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82768" stop="78775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82468" g_stop="82224" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82223" i_stop="80939" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80938" g_stop="80754" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="430" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80753" i_stop="80355" i_length="399">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80354" g_stop="80165" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="620" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80164" i_stop="79189" i_length="976">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79188" g_stop="79075" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="734" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E719407" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82468" e_stop="82224"/>
          <exon e_start="80938" e_stop="80754"/>
          <exon e_start="80354" e_stop="80165"/>
          <exon e_start="79188" e_stop="79075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</genome_strand>
        <mrna_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTCCTCAAATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAAATGATAGGGAAGCTCCGAGCTTCTTGTTCGAATCTGTACAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAAAAAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAAAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAACATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAAAGAAAAAAAAACTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698409" ref_strand="+" ref_description="SGN-E698409 [FA06AH05]">
      <seq>caccgaccggttatctccggcaccggtcaccgctcctccattttctctggtcacagggctacttcgctctctttctctaggtcccctgtatcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacgactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctttacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagcctacctttctcaaatgctcccaatggatgataggaaccttcctgatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82671" stop="78782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82371" g_stop="82224" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82223" i_stop="80939" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80938" g_stop="80754" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="333" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80753" i_stop="80355" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80354" g_stop="80165" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="523" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80164" i_stop="79189" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79188" g_stop="79082" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="632" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E698409" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82371" e_stop="82224"/>
          <exon e_start="80938" e_stop="80754"/>
          <exon e_start="80354" e_stop="80165"/>
          <exon e_start="79188" e_stop="79082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAG-CTACCTTTCTCAAATGCT-CCAATGGATGATAGGAACCTTCCTGATCTTCAT</genome_strand>
        <mrna_strand>CACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCTGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTTTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCCTACCTTTCTCAAATGCTCCCAATGGATGATAGGAACCTTCCTGATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307940" ref_strand="+" ref_description="SGN-E307940 [cLEZ-7-H6]">
      <seq>tcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacgactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctctacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82581" stop="78804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82281" g_stop="82224" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82223" i_stop="80939" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80938" g_stop="80754" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="243" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80753" i_stop="80355" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80354" g_stop="80165" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="433" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80164" i_stop="79189" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79188" g_stop="79104" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="518" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E307940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82281" e_stop="82224"/>
          <exon e_start="80938" e_stop="80754"/>
          <exon e_start="80354" e_stop="80165"/>
          <exon e_start="79188" e_stop="79104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGA</genome_strand>
        <mrna_strand>TCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747626" ref_strand="+" ref_description="SGN-E747626 [GI|3449377]">
      <seq>caataggttcatcattatttctcaaacaaaggcttctctagctaaacttcagcctctgtaaaggtcttgagaaaaagtagaatcatggaaaaacgaaaagataatgaagaagcaaacaactcattggtgctattttctgctcttagcaaggacattgccgatgttctggttttcctagagaatgaggaaaatcaaaaagctcttgacaaagatcaagttgaaaagataaaattgaaaatggcatttatttgtacatatgttcagctttcttgttccgattttgagcagtttgaagatataatgactagaaaaagacaagaggttgagaatctgcttcaaccacttttggatgatgatgtctttactagcctcaccagtaatatggatgactgtatcagcttgtatcatcgttcttataaatcagatgccatcatgatggatgagcaattggacttcctcctcttgaatctctatcatctatccaagcatcacgctgaaaagatatttcctggagtgactcaatatgaagttcttcagaatatatgtggcaacataagagatttccatgggttgatagtgaatggttgcattaagcatgagatggttgagaatgtcttncctctgtttcaactcatggctgacagagtaggacacttcctttgggatgatcagactgatgaagactctcgactctccgagctagatgaggatgaacaaaatgatagagactctcgacttttcaagctagcacatctactcttgaagatcgttccggttgaactggaggttatacacatatgttatacaaacttgaaagcttcaacttcagctgaagttggactcttcattaagcagcttctagaaacctctccagatattctgagggaatatctaattcctctgcaagagcacatggtaactgttattacccctagcacttcaggggctcgaaacattcatgtcatgatggaattcctattacttattctttctgatatgcccaaggactttattcatcatgacaaactttttgatctcttggatcgtgtcggagtacttaccagggaggtatcaactcttgtacgtgacttggaagaggaaccaaggaataaagagggtaataaccaaacaaattgtgcaaccctagacttgctggaaaatattgaactcctcaagaaagatctcaaacatgtttatctgaaagccctggattcatctcaatgttgcttccccatgagtgatggaccactcttcatgcatcttctacacatacacttaaatgatttgttagattctaatgcttattcaattgctttgataaaggaagaaatcgagctggtgaagcaagacctgaaattcataagatcattctttgtggatgctgagcaaggattgtataaagatctctgggcacgtgttctagatgtggcttatgaggcaaaagatgtcatagattcaattattgttcgagataatggtctcttacatcttattttctcacttcccattaccataaagaagatcaaacttatcaaagaagagatctctgctttagatgagaacattcccaaggacagaggtctaatcgttgtgaactctcccaagaaaccagttgagagaaagtcattgacaactgataaaataactgtaggttttgaggaggaaacaaacttgatacttagaaagctcaccagtggatcggcagatctagatgtcatttcgatcactggtatgccgggttcaggtaaaactactttggcatacaaagtatacaatgataagtcagtttctagccgtttcgaccttcgtgcatggtgcacggtcgaccaaggatgtgatgagaagaagttgttgaatacaattttcagtcaagttagtgactcagattcaaaattgagtgagaatattgatgttgctgataaattacggaaacaactgtttggaaagaggtatcttattgtcttagatgacgtgtgggatactactacatgggatgagttaacaagaccttttcctgaatctaagaaaggaagtaggattattttgacaactcgggaaaaggaagtggctttgcatggaaagctgaacactgatcctcttgaccttcgattgctaagaccagatgaaagttgggaactattagagaaaagggcatttgggaatgagagttgccctgatgaactattagatgtcggtaaagaaatagccgaaaattgtaaagggcttcctttggtggctgatctgattgctggagtcattgctgggagggaaaagaaaaggagtgtgtggcttgaagttcaaagtagtttgagttcttttattttgaacagtgaagtggaagtgatgaaagttatagaattaagttatgaccatttaccacatcacctcaagccatgcttgctgtattttgcaagttttccgaaggacacttcattgacaatctatgagttgaatgtttatttcggtgctgaaggatttgtgggaaagacggagatgaacagtatggaagaagtggtgaagatttatatggatgatttaatttacagtagcttggtaatttgtttcaatgagataggttatgcactgaatttccaaattcatgatcttgtgcatgacttttgtttgataaaagcaagaaaggaaaatttgtttgatcagataagatcaagtgctccatcagatttgttgcctcgtcaaattaccattgattgtgatgaggaggagcactttgggcttaattttgtcatgttcgattcaaataagaaaaggcattctggtaaacacctctattctttgaggataattggagaccagctggatgacagtgtttctgatgcatttcacctaagacacttgaggcttcttagagtgttggacctgcatacgtcttttatcatggtgaaagattctttgctgaatgaaatatgcatgttgaatcatttgaggtacttatccattgacacacaagttaaatatctgcctttgtctttctcaaacctctggaatctagaaagcctgtttgtgtctaccaacagatcaatcttggtactattaccgagaattttggatcttgtaaagttgcgagtgctgtccgtggatgcttgttctttctttgatatggatgcagatgaatcaatattgatagcagaggacacaaagttagagaacttgagaatattaacggaactgttgatttcctattcgaaagatacaaagaatattttcaaaaggtttcccaatcttcagttgctttcatttgaactcaaggagtcatgggattattcaacagagcaacattggttctcggaattggatttcctaactgaactagaaacactctctgtaggttttaaaagttcaaacacaaacgatagtgggtcctctgtagcgacaaatcggccgtgggattttcacttcccttcaaatttgaaaatactgtggttgcgtgaatttccgctgacatccgattcactatcaacaatagcgagactgcccaaccttgaagagttgtccctttatcatacaatcatccatggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaacttcaatcaagttagtatttccaagtgggaggttggagaggaatccttccccaatcttgagaaattaaaactgcggggatgtcataagctagaggagattccacctagttttggagatatttattcattgaaatctatcaaaattgtaaagagtcctcaacttgaagattctgctctcaaaattaaggaatacgctgaagatatgaggggaggggacgagcttcagatccttggccaaaagaatatccccttatttaagtagcattatggttgaaaagtagattgtactttgctgggtagattgtatatgattaagaaaattttgttgcagttatgaaatatttttgtggatttctcaaagtttctgcaacaaaaattataatttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93961" stop="26835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93659" g_stop="93627" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="63" r_length="33" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93626" i_stop="92712" i_length="915">
            <donor d_prob="0.833" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92649" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92648" i_stop="92574" i_length="75">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92573" g_stop="88825" g_length="3749"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="3889" r_length="3763" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88824" i_stop="87859" i_length="966">
            <donor d_prob="0.900" d_score="0.66"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87858" g_stop="87839" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="3890" r_stop="3909" r_length="20" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87838" i_stop="86133" i_length="1706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.381" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86132" g_stop="86128" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="3910" r_stop="3914" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86127" i_stop="85352" i_length="776">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85351" g_stop="85269" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="3915" r_stop="3997" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E747626" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>3953</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93659" e_stop="93627"/>
          <exon e_start="92711" e_stop="92649"/>
          <exon e_start="92573" e_stop="88825"/>
          <exon e_start="87858" e_stop="87839"/>
          <exon e_start="86132" e_stop="86128"/>
          <exon e_start="85351" e_stop="85269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCTCTAGCTAAACTTTAGCCTGTGTGAAGGTACCATCTTGCCTTCTTTATTCACGGCATAATAACAATGAATTTGGTCGATGAATTGTATTATATTAATCTTGCAATTCTAAATATCGCTATTTGTTGTTCTCCTTTCGACCAAACTACTTCTTCAATCTCTTACTTCAACCTGTCTAGCAAAAATATGTCAAAAAGGTATGAGCATGCTTAATCAGAGCTCTCTATTGATTCTACTTCACCTACTCTTAAAAAAAAATTTACTATTATTTTTATCAAAATAAAAGAGTAATCTTTTTCCATTAGCCCAAGTCGAGATAGGAGAAAAATATTATTAGAGAGATTATTAATTTAATGACATTTTACTACCTAAAGTTGATATTTTAAACATTAATCTTGTACTCCAAAACACTATTTCTATCACTGTTTTCTTTACTTTTACTTTATAGACTTTTTTGTCAGAAAAAAGTTAGACGGATACATTTGATGTTGTTTTCCATTCTCATTCTCTCTTTATTCTTTTTTCTTTACATTCACACGCACAATAATTTTCTTGTAGGCTCCTTATAAGCCATATGCACATAGACGAATCTAGGATCTGATGTTTACAAGTTTCTATGTCGACGTCATATTAATATCGATAATAATTAGATTGACAATCACATATTTATAATTATTAAGTCGATAACGTTCTTCTTTGTATAGGTTGGAAAAGTAATGGTAAACGAGCAGGACTCCTTTTTCTTTTCTTTTTTTTATAATAATTAACAGTTGTGAGATTTTATGTTTGTGATTCATGTCATAAATATTTTGATGTGTGATTAAGATTGACATTTCCAATTGTGTGAGTCTAAAATTACTATATGTGAAAATAGTGATATTATTGATTATTGTATCTTTTCATCTTCTTTCTCCTGTTACTTTTATTTACTTTTTATTCATCAGGTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAACAAACAACTCATTGGTATGTTATTTTATAGAGTAAATTGTAAAGTATTGAATTATAGATATGTGGCTTTAAAATGTATTATTTTGGCAGGTGTTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTACCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAAAAGACAAGAGGTTGAGAAACTGCTTCAACCACTTTTGGATGATGATGTCTTTACTAGCCTCACCAGTAATATGGATGATTGTATCAGC-----T--T-G----TATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTTTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACCTAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGACGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGACTGATGAAGACTCTCGACTCTCCGAGCTAGATGCGGATGAACCAAATGATAGAGTCTCTCGACTTTTCAAGCTAGCACATCTACTCTTGAAGATTGTCCCGGTTGAACTGGAGGTTATGCACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCTGAAGTTGGACTCTTCATTAAGCAGCTTCTAGAAACCTCTCCAGATATTCTGAGAGAATATCTAATTCATCTGCAAGAGCACATGGTAAGTGTTATTACCCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGCTGGAATTCCTGTTGATTATCCTTTCTGATATGCCCAAGGGCTTTATTCATCATGACAAACTTTTTGATCTCTTGGATCGTGTTGGAACACTTACCAGGGATGTATCAACTCTTGTACACGATTTGGAAGAGAAATTAAGGAATAAACAGGGTAACGACCAAACAAATCGTGCAACACTAGACTTGCTAAAAGATATTGAACTCCTCAAGGAAGACCTCAAACATGTTTATCTGAAGTCACCGGATTCATATCAATGTTTCTTCCCCATGAGTGATGGACCGCTCTTCATGCATATGTTGCACCTACACGTAAATGATTTGTTAGATTCAAATGCTTATTCAGTTTCTTTGATTAAGGAAGAAATTGAGCTGGTGAAGCAAGACCTGGAATTCATAAGATCATTCTTTGTGGATGCTGAGCAAGGATTGTATAAAGATATTTGGGCACGTATTCTAGATGTGGCTTATGAGGCAAAAGATGTCATTGATTCAATTATTGTTAGAGATAATGGTCTCTTACATCTTCTTTTCTCACTTCCCATTACCATAAAGAAGATGAAGCTTATCAAAGAAGAGGTTTCTGATTTACATGAGAAGATTCTGAAGAACAGAGGTCTCATTGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGCAAGTCATTGACAACTGATAAAATAGTTGTAGGTTTTGAGGAGGAGACAAAATGGATACTTAGAAAGCTCACTAGTGGACCTACAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAATCAGTTTCTAGCCATTTCGACCTTCATGCATGGTGCACGGTCGACCAAGGATGTGATGAGAAGAAGTTGTTGAATAAAATTTTCAAACAAGTTAGTGACTCAGATTCAAAATTGAGTGAGGATATTGATGTTGCTGATAAGCTACGGAAACAACTGTATGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACAACTACATGGGATGAGTTGACAAGACCTTTTCCTGAATCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGATCAGAAGAAAGTTGGGAATTATTACAGAAAAGGGCATTTGGAAACGAGAGTTGCCCTAATGAACTATTAGATGTCGGTAAAGAAATCGCCGAAAATTGTAAAGGTCTTCCTTTGGTGGCTGATCTAATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTTTAAATAATTCGCATTCCTTTATTTTGAAGAATGAAGTGGAAGTGATGAAAGTTATTGAAATAAGTTATGACCACTTATCTGATCATCTGAAGCCATGCTTGCTGTATTTTGCAAGTTGGCCGAAGGACACTATAATGACAATCTATGAGTTGAATGGTTTTTTGGGTGGTGAAGGATTTGTGGGGAAGACAGAGATGAAGAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCGAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGAGTACCCGACTTACCAACTTCATGATCTTGTGCATGATTATTGTTTGATAAAAGCAAGAAAGGAAAATCTGTTTGATCGGATAAGATCAAGTGCTCCATCAGATTTGTTGCCTCGTCAAATTACCATTGA---TGAT-A--AGGAGCACTTTGGGCTTAATTTTGTCATGTTCGATTCAAATAAGAAAAGGCATTCTGGTAAACACCTCTATTCTTTGGGGATAAATGGAGACCAACTGGATGACAGTGTTTCTGATGCATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGGACCTGGATAACTCTTTTATCATGGTGAATGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTGGGACAGAAGTTAAATATCTGCCTTTGTCTTTCTCAAACCTCTGGAATCTAGAAATCTTGTCGGTGAATAACAAAGAATCAACCTTGATACTATTACCAAGAATTTGGGATCTTGTAAAGCTGCGAGCGCTGTTCGTGAGTGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATTGCAGAGGACACAAAGTTAGAGAACTTGAGAATATTAGGGGAACTGGTGATTTCCTATTTGAAAGATACAAAGAATATTTTCAAAAGGTTTCCCAATCTTCAGGTGCTTCAGTTTGAACTCAAGGAGTCATGGGATTATTCAACAGAGCAATATTGGTTCCCGAAATTGGATTGCCTAACTGAACTAGAACAACTCAGTGTAAGTTTTGAAAGTTCAAACACAAACCACATTGGGTCCTCTGTAGCGACAAATCGGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAACAACTGTTGTTGTCTGACTTTCCTCTGACATCCGATTCGCTATCAACAATAGCGAGACTGCACAACCTAGAAGAGTTGTCCCTTTATGATGCAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTATGAATCTCAAATTTTTGAACTTGTGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGGATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAATATTCTGCTCTCAAGATTAAGGAATATGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAAAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAACTTTGCTGGGTGACATTGTATATGACAAATATCATTTGTTAATTTGTCCATTTGAAGTGACTATCTGAAGTTCATATTTTTAAACATTAATCTTGTATACCAAACTACTATTCCTATGCCATGTTGTTTGCCATTGTCGTTCTCTCTTTGTTGTTTTTCTTTCCATTCATACACACATTAATTTTCTAGTAGACCGCATATTACTACATCTGTATTATCCGTATGCAAGAGGAATCTAGGATTTGATGCTTACAACTATTTGTGGCGACCTCATGTTAATATCAATAACAATTAGATTCACATATGTATAGGATTTTGACAGAAATTGAGGGATTCACATGAATTCATAGATTACTCTGTTGATTTGACTTTGGCTGTCCAAACCTCCTTTGTGTCTAACTTCGTCTGAAGTCCCATTTATATGCTCAAAGCTCAGTCAAGGTACTGATTCAATTTCGATTTATAGACAAAGATACTAGTAGAAATGACGTCTTTCCTTTCTATGTTAACATTTGGATAGAGAATTTGCATGTTAAAGACTTACAACAACAGAAAAAGAGTTAAAATCATTTAATTGAGCAAGAATTTCAAATCATTTCAAAACGACAGCACAATATACTCGATCTTTCAACGGAAACAACTGGTTGGACAACAATGCTATTTGTAACTCCAATGAACAACACTGCAACGTACATGTATCTCATTGCACTAAATAAATCCCGTTTAGAGTAACATATCAATAGTTACGAACAATATGATCACGACAAAGGATTGTAAGTACCACAGGACAAGTCATGCTTGCATGAAAAACAGATATGTAAAGAATCAAAATCCTGCTACTGAAATAAGCAGTTATGATTATCCAAAAATCATGAATACACATGCACTTGAGTTTGTTCCAAGAAAAAACAACCAACTACTGTCGCAAGTGAAGATTCAAAAGTGACTATTGATGTTAATTCTTCCACAAGGTTGAATAATTTTGTCACAATAGGATTTAAGACGAAGAAGAAACAGGCGACAATTTTGTAAGCATAGACCTTCTTATGCAACTATGAGCTGGTATGCTATTCATTTTCTTTACTCGTAAAAATCGTTGATACTAAAGAATGCCAATCCAAGTCCTGCTGAATAGGCGCCAGGTGACTGGTTGCTGTTAATAATTTTGGGAAACTTACAAGGTCGTAGAAATAAAGTGCACCCACAAATAAACAAGCATATGAAACATACTACACTGCACCCACAAATAAACAAGCCGAACAAATTTGAGGAGCAGTAGGGGCACACCTTCAACTAGAAAATAATAAGCTTCTTCCGATATTGCTCACAAAGATTGTACAAATCTTTGGGAATCAAATACGTATATGAAGCACGGAGTAGAAGGTAAAAGGTACGCAATATCTAAACTTCTAAACATTCCCTCTAGCCTCTGAAGACTACATTATCTTTACTAGCTTAAAGAAGGCTTTATCAAGGGGGGAAAACAATCTTTTGCCGCCCGACGAGGGACAAAGAAATCAACACGAGTGACTAAAGCAGTGAGTCTGGCAGAACATGTTAATCCTATCAAATATCAATGCTAAAAAAGAGTAAAATTACCTTGACAATACTTGTATTAGTCAAATTTTACCTAAACAAACAAAGTTTAAGCAGCTAGCCGCACATCTGCCTATAGAACACATACGAAAATCAACTGGCGACTACACAAAAAAGAAATATTATACACAAAGTAAAGAAAACTACACGAGCAAAAATTTTAACATACATGTACCAAATTTTCTATAAACTGACCTTGAGTTAGTACATAATATCATTTTAATTCTGTTATTTTCTTACAATAGCCTGTATTTATAAGGTTAATAAACAGAAACAGAAATAAGATGAAGCAGAAAAAATATAAAATACAAGAATTAATCCGAGTCCACAGAAACTACTGTGTGTCCTTAAGAAATTTAATCCCCTCACTGTACCCAAGGTTATGGATTAATTTCTCCCAAGATAAAACAGATCAAACTTGTTAAAGAAATAGCGGTACCTCAAACTTCTTTAACTTCAACGAACTTAAGAACAACAACAAGTCACACAGACTCAGTCGATCGACACTTTGATTTTATTTGAGAGAAAAAAAATGCAGAGAAAGAAAAATTTTCAGTGTTTGAAAAATCAAAAATTGACTTCCTTTTATAGCCATTTTCAGCAAGGAACATGTCTGTTCAGTGAAATCTGTTCAGACCCATTTTATCCAGAAAGTTGTGTCTTTTGGAAAAAATAACAACTTTTCGAAAAAATGTGTCTGTTAGGAAAATAACTACTTTTTGAAAAGTAACGACTTTTCGGAAAAGTAACAACTTTTCGAAATGTTACCGTTACCCGCAAATTTATAAGAGATAATATTAACAGGATTTACTTGATTTAACAAAAATTGATTAAATAAATTTTGTCCAAAAAATTTATCAATCAATCACATCATTTGCCAAATCCAAATCCAAAGCCAAAGCCAAAGTAGTTCCCTTACTTTTCATATTCTCTCTTTTCTTTTTCCATTCACACTTGCTAAAACCCAACAATCCCCCACAAGAATGTGGAAGGCTATTGTTAAAACATATGCATGAAAAAACTTGTGTGTCTTGTAGGTAAAGGTTAATCGCATCTGGATAAGTAGGTTTCCCTTTAAACTTTCCGTAGTGAACATATATCGGATATACTCGGTCAATCGGTAGATTTGATATCTTTGAACCGTCGAGCTTTGGTGTATACCTAGACAACATATGTCACACAATCAACCCTTGAACTGTTCTTAGTTCTCATTGTTTTGTTCGTTTCAGCCATGAACACATCTTGGATAGTAAGTGCTTAAAGAACTGGTCTTACCGGATTCTCCTTGAAGCGGCTTACACTTCACACTTACATAGGTGATTTCTAAATGTGTTATCCCATAGATACACCATTTGATATTCCCTGTATCAAACTTAGAAATCATTAAAAAGTCCTTATGTCTTTATCCTGATTACTAAACATTGTCTCATCATGAGAATGGACCATAATAATATTTTTTTCCTTTGACAATGTTGAACCGTCATTAATGACTTTGTTTTATCTCCTTGAACCTAGATCTTGGGATCTCCAGCCTTCTAGGTAGAGTTACCGCCACGATGACTTGTTCTCGGCCATAGTCCCATTCTCGTCGATGATTTCTCAACTCCCTCTCTAGTTAGGCCTTTTGTAAGTGGATCCGACACATTATCTTTTGACTTCACATAGTCAATTGTGATAATTCCACTAGAGAGTAGTTGTCTCACAGAGTTATGTCTTCGTCTTATGTGACGAGACTTGCCGTTATACATAATGCTTCCAGCCCTTCCTATTGCAGCTTGACTATCACAATGTATGCATATAGGGGCCATTGGTTTGGGCCAAAATGGAATATCTTCTAAGAAATTCTGGAGCCATTCAGCTTCTTCACCTGCCTTGTCTAAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA</genome_strand>
        <mrna_strand>GGCTTCTCTAGCTAAACTTCAGCCTCTGTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAGCAAACAACTCATTG...........................................................................GTGCTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTTCCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGATAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTGTTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAAAAGACAAGAGGTTGAGAATCTGCTTCAACCACTTTTGGATGATGATGTCTTTACTAGCCTCACCAGTAATATGGATGACTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTCTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATATATGTGGCAACATAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGATGGTTGAGAATGTCTTRCCTCTGTTTCAACTCATGGCTGACAGAGTAGGACACTTCCTTTGGGATGATCAGACTGATGAAGACTCTCGACTCTCCGAGCTAGATGAGGATGAACAAAATGATAGAGACTCTCGACTTTTCAAGCTAGCACATCTACTCTTGAAGATCGTTCCGGTTGAACTGGAGGTTATACACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCTGAAGTTGGACTCTTCATTAAGCAGCTTCTAGAAACCTCTCCAGATATTCTGAGGGAATATCTAATTCCTCTGCAAGAGCACATGGTAACTGTTATTACCCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGATGGAATTCCTATTACTTATTCTTTCTGATATGCCCAAGGACTTTATTCATCATGACAAACTTTTTGATCTCTTGGATCGTGTCGGAGTACTTACCAGGGAGGTATCAACTCTTGTACGTGACTTGGAAGAGGAACCAAGGAATAAAGAGGGTAATAACCAAACAAATTGTGCAACCCTAGACTTGCTGGAAAATATTGAACTCCTCAAGAAAGATCTCAAACATGTTTATCTGAAAGCCCTGGATTCATCTCAATGTTGCTTCCCCATGAGTGATGGACCACTCTTCATGCATCTTCTACACATACACTTAAATGATTTGTTAGATTCTAATGCTTATTCAATTGCTTTGATAAAGGAAGAAATCGAGCTGGTGAAGCAAGACCTGAAATTCATAAGATCATTCTTTGTGGATGCTGAGCAAGGATTGTATAAAGATCTCTGGGCACGTGTTCTAGATGTGGCTTATGAGGCAAAAGATGTCATAGATTCAATTATTGTTCGAGATAATGGTCTCTTACATCTTATTTTCTCACTTCCCATTACCATAAAGAAGATCAAACTTATCAAAGAAGAGATCTCTGCTTTAGATGAGAACATTCCCAAGGACAGAGGTCTAATCGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGAAAGTCATTGACAACTGATAAAATAACTGTAGGTTTTGAGGAGGAAACAAACTTGATACTTAGAAAGCTCACCAGTGGATCGGCAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAGTCAGTTTCTAGCCGTTTCGACCTTCGTGCATGGTGCACGGTCGACCAAGGATGTGATGAGAAGAAGTTGTTGAATACAATTTTCAGTCAAGTTAGTGACTCAGATTCAAAATTGAGTGAGAATATTGATGTTGCTGATAAATTACGGAAACAACTGTTTGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACTACTACATGGGATGAGTTAACAAGACCTTTTCCTGAATCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGGGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGACCAGATGAAAGTTGGGAACTATTAGAGAAAAGGGCATTTGGGAATGAGAGTTGCCCTGATGAACTATTAGATGTCGGTAAAGAAATAGCCGAAAATTGTAAAGGGCTTCCTTTGGTGGCTGATCTGATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTCAAAGTAGTTTGAGTTCTTTTATTTTGAACAGTGAAGTGGAAGTGATGAAAGTTATAGAATTAAGTTATGACCATTTACCACATCACCTCAAGCCATGCTTGCTGTATTTTGCAAGTTTTCCGAAGGACACTTCATTGACAATCTATGAGTTGAATGTTTATTTCGGTGCTGAAGGATTTGTGGGAAAGACGGAGATGAACAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTACAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTTATGCACTGAATTTCCAAATTCATGATCTTGTGCATGACTTTTGTTTGATAAAAGCAAGAAAGGAAAATTTGTTTGATCAGATAAGATCAAGTGCTCCATCAGATTTGTTGCCTCGTCAAATTACCATTGATTGTGATGAGGAGGAGCACTTTGGGCTTAATTTTGTCATGTTCGATTCAAATAAGAAAAGGCATTCTGGTAAACACCTCTATTCTTTGAGGATAATTGGAGACCAGCTGGATGACAGTGTTTCTGATGCATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGGACCTGCATACGTCTTTTATCATGGTGAAAGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTATCCATTGACACACAAGTTAAATATCTGCCTTTGTCTTTCTCAAACCTCTGGAATCTAGAAAGCCTGTTTGTGTCTACCAACAGATCAATCTTGGTACTATTACCGAGAATTTTGGATCTTGTAAAGTTGCGAGTGCTGTCCGTGGATGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATAGCAGAGGACACAAAGTTAGAGAACTTGAGAATATTAACGGAACTGTTGATTTCCTATTCGAAAGATACAAAGAATATTTTCAAAAGGTTTCCCAATCTTCAGTTGCTTTCATTTGAACTCAAGGAGTCATGGGATTATTCAACAGAGCAACATTGGTTCTCGGAATTGGATTTCCTAACTGAACTAGAAACACTCTCTGTAGGTTTTAAAAGTTCAAACACAAACGATAGTGGGTCCTCTGTAGCGACAAATCGGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAAATACTGTGGTTGCGTGAATTTCCGCTGACATCCGATTCACTATCAACAATAGCGAGACTGCCCAACCTTGAAGAGTTGTCCCTTTATCATACAATCATCCATGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTCAATCAAGTTAGTATTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTCATAAGCTAGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATCTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAAATTAAGGAATACGCTGAAGATATGAGGGGAGGGGACGAGCTTCAGATCCTTGGCCAAAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGT-AC-TT-T-GCTGGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTATATGATTAAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAAGTTTCTGCAACAAAAATTATAATTTTTATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86343" stop="87167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86642" g_stop="86867" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86642" e_stop="86867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTT-TTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAAGTTTGATCTGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86352" stop="87339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86652" g_stop="87049" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86652" e_stop="87049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTT-TTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAAGTTTGATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATT-TTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGCTATTGTAAGAAAATAACAGAATTAAAATGATATTATG</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAG--AGTAACAATCTTAAGAAAAT-TTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86406" stop="87330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86706" g_stop="87034" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86706" e_stop="87034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATTT-TTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAAGTTTGATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATT-TTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGCTATTGTAAGAAAATAACAGAAT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAG--AGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747625" ref_strand="+" ref_description="SGN-E747625 [GI|3449379]">
      <seq>tccaatagcttcaacattatttctcaaacaaagggttctctagctaaacttcagccagtgtaaaggtcttgagaaaaagtagaatcatggaaaaacgaaaagatattgaagaagcaaacaactcattggtgttattttctgctcttagcaaggacattgccaatgttctaattttcctagagaatgaggaaaatcaaaaagctcttgacaaagatcaagttgaaaagctaaaattgaaaatggcatttatttgtacatatgttcagctttcttattccgattttgagcagtttgaagatataatgactagaaatagacaagaggttgagaatctgcttcaatcacttttggatgatgatgtccttactagcctcaccagtaatatggatgactgtatcagcttgtatcatcgttcttataaatcagatgccatcatgatggatgagcaattggacttcctcctcttgaatctgtatcatctatccaagcatcacgctgaaaagatatttcctggagtgactcaatatgaagttcttcagaatgtatgtggcaacataagagatttccatgggttgatactgaatggttgcattaagcatgagatggttgagaatgtcttacctctgtttcaactcatggctgaaagagtaggacacttcctttgggaggatcagactgatgaagactctcggctctccgagctagatgaggatgaacacaatgatagagactctcgactcttccagctaacacatctactcttgaagattgttccaactgaactggaggttatgcacatatgttatacaaatttgaaagcttcaacttcagcagaagttggacgcttcattaagaagctcctggaaacctcaccggatattctcagagaatatatcattcaactacaagagcatatgttaactgttattccccctagcactttaggggctcgaaacattcatgtcatgatggaattcctattacttattctttctgatatgcccaaggactttattcatcatgacaaactttttgatctcttggctcatgttggaacacttaccagggaggtatcgactcttgtacgtgacttggaagagaaattaaggaataaagagggtaataaccaaacaaattgtgcaaccctagacttgctggaaaatattgaactcctcaagaaagatctcaaacatgtttatctgaaagccccaaattcatctcaatgttgcttccccatgagtgatggaccactcttcatgcatcttctacacatgcacttaaatgatttgctagattctaatgcttattcaatttctttgataaaggaagaaatcgagttggtgagtcaagaactggaattcataagatcattctttggggatgctgctgagcaaggattgtataaagatatctgggcacgtgttctagatgtggcttatgaggcaaaagatgtcatagattcaattattgttcgagataatggtctcttacatcttattttctcacttcccattaccataaagaagatcaaacttatcaaagaagagatctctgctttagatgagaacattcccaaggacagaggtctaatcgttgtgaactctcccaagaaaccagttgagagaaagtcattgacaactgataaaataattgtaggttttgaggaggagacaaacttgatacttagaaagctcaccagtggacccgcagatttagatgtcatttcgatcaccggtatgccgggttcaggtaaaactactttggcatacaaagtatacaatgataagtcagtttctagacattttgaccttcgtgcatggtgcacggtcgatcaaggatatgacgacaagaagttgttggatacaattttcagtcaagttagtggctcagattcaaatttgagtgagaatattgatgttgctgataaattgcggaaacaactgtttggaaagaggtatcttattgtcttagatgatgtgtgggatactactacattggatgagttgacaagaccttttcctgaagctaagaaaggaagtaggattattttgacaactcgagaaaaggaagtggctttgcatggaaagctgaacactgatcctcttgaccttcgattgctaagaccagatgaaagttgggaacttttagataaaaggacatttggtaatgagagttgccctgatgaactattagatgtcggtaaagaaatagccgaaaattgtaaagggcttcctttggtggctgatctgattgctggagtcattgctgggagggaaaagaaaaggagtgtgtggcttgaagttcaaagtagtttgagttcttttattttgaacagtgaagtggaagtgatgaaagttatagaattaagttatgaccatttaccacatcacctcaagccatgcttgcttcactttgcaagttggccgaaggacactcctttgacaatctatttgtttactgtttatttgggtgctgaaggatttgtggaaaagacggagatgaagggtatagaagaagtggtgaagatttatatggatgatttaatttccagtagcttggtaatttgtttcaatgagataggtgatatactgaatttccaaattcatgatcttgtgcatgacttttgtttgataaaagcaagaaaggaaaatttgtttgatcggataagatcaagtgctccatcagatttgttgcctcgtcaaattaccattgattatgatgaggaggaggagcactttgggcttaattttgtcatgttcgattcaaataagaaaaggcattctggtaaacacctctattctttgaggataaatggagaccagctggatgacagtgtttctgatgcatttcacctaagacacttgaggcttattagagtgttggacctggaaccctctttaatcatggtgaatgattctttgctgaatgaaatatgcatgttgaatcatttgaggtacttaagaattcggacacaagttaaatatctgcctttctctttctcaaacctctggaatctagaaagtctgtttgtgtctaacaaaggatcaatcttggtactattaccgagaattttggatcttgtaaagttgcgagtgctgtccgtgggtgcttgttctttctttgatatggatgcagatgaatcaatattgatagcaaaggacacaaagttagagaacttgagaatattaggggaactgttgatttcctattcgaaagatacaatgaatattttcaaaaggtttcccaatcttcaggtgcttcagtttgaactcaaggagtcatgggattattcaacagagcaacattggttcccgaaattggattgcctaactgaactagaaacactctgtgtaggttttaaaagttcaaacacaaaccactgtgggtcctctgttgtgacaaatcggccgtgggattttcacttcccttcaaatttgaaagaactgttgttgtatgactttcctctgacatccgattcactatcaacaatagcgagactgcccaaccttgaaaatttgtccctttatgatacaatcatccagggagaagaatggaacatgggggaggaagacacttttgagaatctcaaatttttgaacttgcgtctactgactctttccaagtgggaggttggagaggaatccttccccaatcttgagaaattaaaactgcaggaatgtggtaagcttgaggagattccacctagttttggagatatttattcattgaaatttatcaaaattgtaaagagtcctcaacttgaagattctgctctcaagattaagaaatacgctgaagatatgagaggagggaacgatcttcagatccttggccagaagaatatccccttatttaagtagcattttggttgaactttgcttggtgatattgtatatgattaaaatatcctgtgatgagattcctcttagtttcttttaacaaaaaatataatttttataagtacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93961" stop="88518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93659" g_stop="93627" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="65" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93626" i_stop="92712" i_length="915">
            <donor d_prob="0.833" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92649" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="128" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92648" i_stop="92574" i_length="75">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92573" g_stop="88825" g_length="3749"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="3901" r_length="3773" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3963" polyA_stop="3982"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E747625" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>3845</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93659" e_stop="93627"/>
          <exon e_start="92711" e_stop="92649"/>
          <exon e_start="92573" e_stop="88825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCTCTAGCTAAACTTTAGCCTGTGTGAAGGTACCATCTTGCCTTCTTTATTCACGGCATAATAACAATGAATTTGGTCGATGAATTGTATTATATTAATCTTGCAATTCTAAATATCGCTATTTGTTGTTCTCCTTTCGACCAAACTACTTCTTCAATCTCTTACTTCAACCTGTCTAGCAAAAATATGTCAAAAAGGTATGAGCATGCTTAATCAGAGCTCTCTATTGATTCTACTTCACCTACTCTTAAAAAAAAATTTACTATTATTTTTATCAAAATAAAAGAGTAATCTTTTTCCATTAGCCCAAGTCGAGATAGGAGAAAAATATTATTAGAGAGATTATTAATTTAATGACATTTTACTACCTAAAGTTGATATTTTAAACATTAATCTTGTACTCCAAAACACTATTTCTATCACTGTTTTCTTTACTTTTACTTTATAGACTTTTTTGTCAGAAAAAAGTTAGACGGATACATTTGATGTTGTTTTCCATTCTCATTCTCTCTTTATTCTTTTTTCTTTACATTCACACGCACAATAATTTTCTTGTAGGCTCCTTATAAGCCATATGCACATAGACGAATCTAGGATCTGATGTTTACAAGTTTCTATGTCGACGTCATATTAATATCGATAATAATTAGATTGACAATCACATATTTATAATTATTAAGTCGATAACGTTCTTCTTTGTATAGGTTGGAAAAGTAATGGTAAACGAGCAGGACTCCTTTTTCTTTTCTTTTTTTTATAATAATTAACAGTTGTGAGATTTTATGTTTGTGATTCATGTCATAAATATTTTGATGTGTGATTAAGATTGACATTTCCAATTGTGTGAGTCTAAAATTACTATATGTGAAAATAGTGATATTATTGATTATTGTATCTTTTCATCTTCTTTCTCCTGTTACTTTTATTTACTTTTTATTCATCAGGTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAACAAACAACTCATTGGTATGTTATTTTATAGAGTAAATTGTAAAGTATTGAATTATAGATATGTGGCTTTAAAATGTATTATTTTGGCAGGTGTTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTACCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAAAAGACAAGAGGTTGAGAAACTGCTTCAACCACTTTTGGATGATGATGTCTTTACTAGCCTCACCAGTAATATGGATGATTGTATCAGC-----T--T-G----TATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTTTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACCTAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGACGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGACTGATGAAGACTCTCGACTCTCCGAGCTAGATGCGGATGAACCAAATGATAGAGTCTCTCGACTTTTCAAGCTAGCACATCTACTCTTGAAGATTGTCCCGGTTGAACTGGAGGTTATGCACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCTGAAGTTGGACTCTTCATTAAGCAGCTTCTAGAAACCTCTCCAGATATTCTGAGAGAATATCTAATTCATCTGCAAGAGCACATGGTAAGTGTTATTACCCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGCTGGAATTCCTGTTGATTATCCTTTCTGATATGCCCAAGGGCTTTATTCATCATGACAAACTTTTTGATCTCTTGGATCGTGTTGGAACACTTACCAGGGATGTATCAACTCTTGTACACGATTTGGAAGAGAAATTAAGGAATAAACAGGGTAACGACCAAACAAATCGTGCAACACTAGACTTGCTAAAAGATATTGAACTCCTCAAGGAAGACCTCAAACATGTTTATCTGAAGTCACCGGATTCATATCAATGTTTCTTCCCCATGAGTGATGGACCGCTCTTCATGCATATGTTGCACCTACACGTAAATGATTTGTTAGATTCAAATGCTTATTCAGTTTCTTTGATTAAGGAAGAAATTGAGCTGGTGAAGCAAGACCTGGAATTCATAAGATCATTCTTTGTGGA---TGCTGAGCAAGGATTGTATAAAGATATTTGGGCACGTATTCTAGATGTGGCTTATGAGGCAAAAGATGTCATTGATTCAATTATTGTTAGAGATAATGGTCTCTTACATCTTCTTTTCTCACTTCCCATTACCATAAAGAAGATGAAGCTTATCAAAGAAGAGGTTTCTGATTTACATGAGAAGATTCTGAAGAACAGAGGTCTCATTGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGCAAGTCATTGACAACTGATAAAATAGTTGTAGGTTTTGAGGAGGAGACAAAATGGATACTTAGAAAGCTCACTAGTGGACCTACAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAATCAGTTTCTAGCCATTTCGACCTTCATGCATGGTGCACGGTCGACCAAGGATGTGATGAGAAGAAGTTGTTGAATAAAATTTTCAAACAAGTTAGTGACTCAGATTCAAAATTGAGTGAGGATATTGATGTTGCTGATAAGCTACGGAAACAACTGTATGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACAACTACATGGGATGAGTTGACAAGACCTTTTCCTGAATCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGATCAGAAGAAAGTTGGGAATTATTACAGAAAAGGGCATTTGGAAACGAGAGTTGCCCTAATGAACTATTAGATGTCGGTAAAGAAATCGCCGAAAATTGTAAAGGTCTTCCTTTGGTGGCTGATCTAATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTTTAAATAATTCGCATTCCTTTATTTTGAAGAATGAAGTGGAAGTGATGAAAGTTATTGAAATAAGTTATGACCACTTATCTGATCATCTGAAGCCATGCTTGCTGTATTTTGCAAGTTGGCCGAAGGACACTATAATGACAATCTATGAGTTGAATGGTTTTTTGGGTGGTGAAGGATTTGTGGGGAAGACAGAGATGAAGAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCGAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGAGTACCCGACTTACCAACTTCATGATCTTGTGCATGATTATTGTTTGATAAAAGCAAGAAAGGAAAATCTGTTTGATCGGATAAGATCAAGTGCTCCATCAGATTTGTTGCCTCGTCAAATTACCATTG---ATGAT----A--AGGAGCACTTTGGGCTTAATTTTGTCATGTTCGATTCAAATAAGAAAAGGCATTCTGGTAAACACCTCTATTCTTTGGGGATAAATGGAGACCAACTGGATGACAGTGTTTCTGATGCATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGGACCTGGATAACTCTTTTATCATGGTGAATGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTGGGACAGAAGTTAAATATCTGCCTTTGTCTTTCTCAAACCTCTGGAATCTAGAAATCTTGTCGGTGAATAACAAAGAATCAACCTTGATACTATTACCAAGAATTTGGGATCTTGTAAAGCTGCGAGCGCTGTTCGTGAGTGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATTGCAGAGGACACAAAGTTAGAGAACTTGAGAATATTAGGGGAACTGGTGATTTCCTATTTGAAAGATACAAAGAATATTTTCAAAAGGTTTCCCAATCTTCAGGTGCTTCAGTTTGAACTCAAGGAGTCATGGGATTATTCAACAGAGCAATATTGGTTCCCGAAATTGGATTGCCTAACTGAACTAGAACAACTCAGTGTAAGTTTTGAAAGTTCAAACACAAACCACATTGGGTCCTCTGTAGCGACAAATCGGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAACAACTGTTGTTGTCTGACTTTCCTCTGACATCCGATTCGCTATCAACAATAGCGAGACTGCACAACCTAGAAGAGTTGTCCCTTTATGATGCAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTATGAATCTCAAATTTTTGAACTTGTGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGGATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAATATTCTGCTCTCAAGATTAAGGAATATGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAAAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAACTTTGCTGGGTGACATTGTATATGACAA</genome_strand>
        <mrna_strand>GGGTTCTCTAGCTAAACTTCAGCCAGTGTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATATTGAAGAAGCAAACAACTCATTG...........................................................................GTGTTATTTTCTGCTCTTAGCAAGGACATTGCCAATGTTCTAATTTTCCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAATAGACAAGAGGTTGAGAATCTGCTTCAATCACTTTTGGATGATGATGTCCTTACTAGCCTCACCAGTAATATGGATGACTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACATAAGAGATTTCCATGGGTTGATACTGAATGGTTGCATTAAGCATGAGATGGTTGAGAATGTCTTACCTCTGTTTCAACTCATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGACTGATGAAGACTCTCGGCTCTCCGAGCTAGATGAGGATGAACACAATGATAGAGACTCTCGACTCTTCCAGCTAACACATCTACTCTTGAAGATTGTTCCAACTGAACTGGAGGTTATGCACATATGTTATACAAATTTGAAAGCTTCAACTTCAGCAGAAGTTGGACGCTTCATTAAGAAGCTCCTGGAAACCTCACCGGATATTCTCAGAGAATATATCATTCAACTACAAGAGCATATGTTAACTGTTATTCCCCCTAGCACTTTAGGGGCTCGAAACATTCATGTCATGATGGAATTCCTATTACTTATTCTTTCTGATATGCCCAAGGACTTTATTCATCATGACAAACTTTTTGATCTCTTGGCTCATGTTGGAACACTTACCAGGGAGGTATCGACTCTTGTACGTGACTTGGAAGAGAAATTAAGGAATAAAGAGGGTAATAACCAAACAAATTGTGCAACCCTAGACTTGCTGGAAAATATTGAACTCCTCAAGAAAGATCTCAAACATGTTTATCTGAAAGCCCCAAATTCATCTCAATGTTGCTTCCCCATGAGTGATGGACCACTCTTCATGCATCTTCTACACATGCACTTAAATGATTTGCTAGATTCTAATGCTTATTCAATTTCTTTGATAAAGGAAGAAATCGAGTTGGTGAGTCAAGAACTGGAATTCATAAGATCATTCTTTGGGGATGCTGCTGAGCAAGGATTGTATAAAGATATCTGGGCACGTGTTCTAGATGTGGCTTATGAGGCAAAAGATGTCATAGATTCAATTATTGTTCGAGATAATGGTCTCTTACATCTTATTTTCTCACTTCCCATTACCATAAAGAAGATCAAACTTATCAAAGAAGAGATCTCTGCTTTAGATGAGAACATTCCCAAGGACAGAGGTCTAATCGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGAAAGTCATTGACAACTGATAAAATAATTGTAGGTTTTGAGGAGGAGACAAACTTGATACTTAGAAAGCTCACCAGTGGACCCGCAGATTTAGATGTCATTTCGATCACCGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAGTCAGTTTCTAGACATTTTGACCTTCGTGCATGGTGCACGGTCGATCAAGGATATGACGACAAGAAGTTGTTGGATACAATTTTCAGTCAAGTTAGTGGCTCAGATTCAAATTTGAGTGAGAATATTGATGTTGCTGATAAATTGCGGAAACAACTGTTTGGAAAGAGGTATCTTATTGTCTTAGATGATGTGTGGGATACTACTACATTGGATGAGTTGACAAGACCTTTTCCTGAAGCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGACCAGATGAAAGTTGGGAACTTTTAGATAAAAGGACATTTGGTAATGAGAGTTGCCCTGATGAACTATTAGATGTCGGTAAAGAAATAGCCGAAAATTGTAAAGGGCTTCCTTTGGTGGCTGATCTGATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTCAAAGTAGTTTGAGTTCTTTTATTTTGAACAGTGAAGTGGAAGTGATGAAAGTTATAGAATTAAGTTATGACCATTTACCACATCACCTCAAGCCATGCTTGCTTCACTTTGCAAGTTGGCCGAAGGACACTCCTTTGACAATCTATTTGTTTACTGTTTATTTGGGTGCTGAAGGATTTGTGGAAAAGACGGAGATGAAGGGTATAGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCCAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGATATACTGAATTTCCAAATTCATGATCTTGTGCATGACTTTTGTTTGATAAAAGCAAGAAAGGAAAATTTGTTTGATCGGATAAGATCAAGTGCTCCATCAGATTTGTTGCCTCGTCAAATTACCATTGATTATGATGAGGAGGAGGAGCACTTTGGGCTTAATTTTGTCATGTTCGATTCAAATAAGAAAAGGCATTCTGGTAAACACCTCTATTCTTTGAGGATAAATGGAGACCAGCTGGATGACAGTGTTTCTGATGCATTTCACCTAAGACACTTGAGGCTTATTAGAGTGTTGGACCTGGAACCCTCTTTAATCATGGTGAATGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTCGGACACAAGTTAAATATCTGCCTTTCTCTTTCTCAAACCTCTGGAATCTAGAAAGTCTGTTTGTGTCTAACAAAGGATCAATCTTGGTACTATTACCGAGAATTTTGGATCTTGTAAAGTTGCGAGTGCTGTCCGTGGGTGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATAGCAAAGGACACAAAGTTAGAGAACTTGAGAATATTAGGGGAACTGTTGATTTCCTATTCGAAAGATACAATGAATATTTTCAAAAGGTTTCCCAATCTTCAGGTGCTTCAGTTTGAACTCAAGGAGTCATGGGATTATTCAACAGAGCAACATTGGTTCCCGAAATTGGATTGCCTAACTGAACTAGAAACACTCTGTGTAGGTTTTAAAAGTTCAAACACAAACCACTGTGGGTCCTCTGTTGTGACAAATCGGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAAGAACTGTTGTTGTATGACTTTCCTCTGACATCCGATTCACTATCAACAATAGCGAGACTGCCCAACCTTGAAAATTTGTCCCTTTATGATACAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACTTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACTGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGAATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGAAATACGCTGAAGATATGAGAGGAGGGAACGATCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTTTGGTTGAACTTTGCTTGGTGATATTGTATATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329806" ref_strand="+" ref_description="SGN-E329806 [cTOD-3-O20]">
      <seq>tttgatcgacaatatattttgatatttagaagtcgtttaagaggatttgtgtaattttcttaattttttgtgtgttaatccatggtgatataactttcattcaatttttaattttttttttatggaatcttccgtaatgaattgaaaaacatagacatatagtctgattatgatccaccacttttttggcatttagaaatcatataatcggaaatatataattttttcaaattttagcatatgttagcaagtaaatattttgatcagtaattaatttattcttttaaaaaaaactttatgaggtattaacttaatttacacgtttctcaatttgtcaatttcttgtatttgacaaaagcaataaatctgtaaactcacagcaattccatttgctaccgtctttttcagcactatatctgatttttatttggggcttttgtcttgagttatcttctttgcttagcaaggtaattttcaacaattcaattgaaatcatatgggaatctttgattatttctacttcattatggaattgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100597" stop="101735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100897" g_stop="101435" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E329806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100897" e_stop="101435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCGACAATATATTTTGATATTTAGAAGTCGTTTAAGAGGATTTGTGTAATTTTCTTAATTTTTTGTGTGTTAATCCATGGTGATATAACTTTCATTCAATTTTTAATTTTTTTTTTATGGAATCTTCCGTAATGAATTGAAAAACATAGACATATAGTCTGATTATGATCCACCACTTTTTTGGCATTTAGAAATCATATAATCGGAAATATATAATTTTTTCAAATTTTAGCATATGTTAGCAAGTAAATATTTTGATCAGTAATTAATTTATTCTTTTAAAAAAAACTTTATGAGGTATTAACTTAATTTACACGTTTCTCAATTTGTCAATTTCTTGTATTTGACAAAAGCAATAAATCTGTAAACTCACAGCAATTCCATTTGCTACCGTCTTTTTCAGCACTATATCTGATTTTTATTTGGGGCTTTTGTCTTGAGTTATCTTCTTTGCTTAGCAAGGTAATTTTCAACAATTCAATTGAAATCATATGGGAATCTTTGATTATTTCTACTTCATTATGGAATTGACAT</genome_strand>
        <mrna_strand>TTTGATCGACAATATATTTTGATATTTAGAAGTCGTTTAAGAGGATTTGTGTAATTTTCTTAATTTTTTGTGTGTTAATCCATGGTGATATAACTTTCATTCAATTTTTAATTTTTTTTTTATGGAATCTTCCGTAATGAATTGAAAAACATAGACATATAGTCTGATTATGATCCACCACTTTTTTGGCATTTAGAAATCATATAATCGGAAATATATAATTTTTTCAAATTTTAGCATATGTTAGCAAGTAAATATTTTGATCAGTAATTAATTTATTCTTTTAAAAAAAACTTTATGAGGTATTAACTTAATTTACACGTTTCTCAATTTGTCAATTTCTTGTATTTGACAAAAGCAATAAATCTGTAAACTCACAGCAATTCCATTTGCTACCGTCTTTTTCAGCACTATATCTGATTTTTATTTGGGGCTTTTGTCTTGAGTTATCTTCTTTGCTTAGCAAGGTAATTTTCAACAATTCAATTGAAATCATATGGGAATCTTTGATTATTTCTACTTCATTATGGAATTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311556" ref_strand="+" ref_description="SGN-E311556 [cTOA-6-C11]">
      <seq>cctgatctccatcatgcgcacaattctgcatgctcgggagtagtttttggtggcaaagttcatgtcttgcataaaggtttatcaactattcaggttttagaaaatttcaagcagggttggattgctcacgagtattcttggctccagggcccgatgactgtcgttaggggaaagctttatgttatgagcaattggttcatttataagcaggaaggagaatcaagaagaatgatagtttcagcatctgattttcgtaggagaatcggttatgctatgatagggttgggagatgatatttatatagttggaggggttaatggaccggattactggaattgtagcgtgaaagtgctatctgatgttgatgtcttgacccttggaagtgagaggccagcatggcgtaaggttgctccattgacaaggtgcagagggacaatccttggctgcacacagctgagaatttaagacatgcataaatggggatgaaattcaaataaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104768" stop="105868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105068" g_stop="105568" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E311556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105068" e_stop="105568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATCTCCATCATGCGCACAATTCTGCATGCTCGGGAGTAGTTTTTGGTGGCAAAGTTCATGTCTTGCATAAAGGTTTATCAACTATTCAGGTTTTAGAAAATTTCAAGCAGGGTTGGATTGCTCACGAGTATTCTTGGCTCCAGGGCCCGATGACTGTCGTTAGGGGAAAGCTTTATGTTATGAGCAATTGGTTCATTTATAAGCAGGAAGGAGAATCAAGAAGAATGATAGTTTCAGCATCTGATTTTCGTAGGAGAATCGGTTATGCTATGATAGGGTTGGGAGATGATATTTATATAGTTGGAGGGGTTAATGGACCGGATTACTGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAATGC</genome_strand>
        <mrna_strand>CCTGATCTCCATCATGCGCACAATTCTGCATGCTCGGGAGTAGTTTTTGGTGGCAAAGTTCATGTCTTGCATAAAGGTTTATCAACTATTCAGGTTTTAGAAAATTTCAAGCAGGGTTGGATTGCTCACGAGTATTCTTGGCTCCAGGGCCCGATGACTGTCGTTAGGGGAAAGCTTTATGTTATGAGCAATTGGTTCATTTATAAGCAGGAAGGAGAATCAAGAAGAATGATAGTTTCAGCATCTGATTTTCGTAGGAGAATCGGTTATGCTATGATAGGGTTGGGAGATGATATTTATATAGTTGGAGGGGTTAATGGACCGGATTACTGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240058" ref_strand="+" ref_description="SGN-E240058 [cLED-32-B22]">
      <seq>tggaattgtagcgtgaaagtgctatctgatgttgatgtcttgacccttggaagtgagaggccagcatggcgtaaggttgctccattgacaaggtgcagagggacaatccttggctgcacacagctgagaatttaagacatgcataaatggggatgaaattcaaataaatgctacaacgaacatttggcactaaagtggctgctaggaatagcatgaagtagacaagtgaagaggaaaaaagcaaattgagattactaatggtggatgatgtttgagggtaaacatgttccatgccttgcctttgtctcctttgtcgtagactgaaaatgatggaaatcctatctgacatgacttctatgaggtgtcttagtagtgatcgactttattttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105098" stop="106088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105398" g_stop="105788" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E240058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105398" e_stop="105788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAATGCTACAACGAACATTTGGCACTAAAGTGGCTGCTAGGAATAGCATGAAGTAGACAAGTGAAGAGGAAAAAAGCAAATTGAGATTACTAATGGTGGATGATGTTTGAGGGTAAACATGTTCCATGCCTTGCCTTTGTCTCCTTTGTCGTAGACTGAAAATGATGGAAATCCTATCTGACATGACTTCTATGAGGTGTCTTAGTAGTGATCGACTTTATTTTAT</genome_strand>
        <mrna_strand>TGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAATGCTACAACGAACATTTGGCACTAAAGTGGCTGCTAGGAATAGCATGAAGTAGACAAGTGAAGAGGAAAAAAGCAAATTGAGATTACTAATGGTGGATGATGTTTGAGGGTAAACATGTTCCATGCCTTGCCTTTGTCTCCTTTGTCGTAGACTGAAAATGATGGAAATCCTATCTGACATGACTTCTATGAGGTGTCTTAGTAGTGATCGACTTTATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341668" ref_strand="+" ref_description="SGN-E341668 [cTOE-23-L2]">
      <seq>acgaggnttttaaactaacatttatgattgtgaacacaaccgtgaatctgaggttgctccggcgttaattgcagttcatccaactcagaaatccgtcgccgttgccgtcggttcgaatctccgcgtctttaatcttcaagaaggttgttcggtttcattggtggataattcaggagtgcacatgcataaggattcaataagagcaattcaatatggtgctgaaggaaagctgtttgtatctgctggcgatgacaaacttgttaagatttgggttactgattcttggcggtgcataagttcggtgtcatccgagaagagagttactgctgttgccatcagtaatgatgggcgttttgtatccttcgcggataaatttggtgtaatttatgcagttgaaatagaaggttctcatgaaaatcaaagtgtgcccaataagaaggcagtcccaattctcgcccactactgcagcatcattactagtctggagttttcaccagatggacgttacattattagtgccgatcgggacttcaaaatccgagtctctgtgttcccagaaaagccatcagatggggctcatgagattcaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106365" stop="109484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106655" g_stop="106791" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106792" i_stop="107815" i_length="1024">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107816" g_stop="107980" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="303" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108316" g_stop="108496" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="484" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108981" g_stop="109037" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="541" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109131" g_stop="109184" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="595" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E341668" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106655" e_stop="106791"/>
          <exon e_start="107816" e_stop="107980"/>
          <exon e_start="108316" e_stop="108496"/>
          <exon e_start="108981" e_stop="109037"/>
          <exon e_start="109131" e_stop="109184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGG-AGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCAGTAAGTCACTATGCAAAAATAATCATTTTATTTTCTACTTTTTTTTATGATTATGATAATGTGTTCAAACTTAGTACTTGTCTATTTCGATGATGTTGACTTAGTTGGACATTGGCACGAAATTTAGGAAAAGAGAGATTTTCTGTAACTTGTGATAGTAAACCATGTATTCAAGTTAAATTGATGTCATTATTTTTGCGATAGACTAGTAATAGAGTGATAAAATGAAATTAGAGGTGTAAAATACTCCCTCGGTCCCAAAATAAGTGTTACTTAAAAAAATATCACAATCATTAAGAAATCAATAAATATGATGTGTAAACTACTTCTATTTGATAAATGTCTCTTGAGAATTGAACAATATTCAGAAAATGAACTATAAGTGTATAGTTGGAATGACATACTAATTATTGTCTTGAATTCTTAGAGTGATACTTATTTTTGGGACAATTTTTTTTGCTAAAGTGACACTTGGTTTGGAATGGGTGAGTATTATTAAAACTTGGTATAATACATAGACAGACTTTTAATTTGACCTCCACGGGTAGTTGAACTTCTGAACTTTCATCGCAACCATCTACACATTTCAAGATGATATAGGTGTGTATGGAGAACACCTTAACTTTGAAAATGCAAATCTAAACTCCTTTGAGGGGGTGCATTCTAGATGTGCATTTTCAAAGTTGGGGCTTTAGTTACCAGCTGAGACTAAGTTAAAGTGTTTATCTATGTATTATGTCTTAAAACTTCTCACACATTTTAAAGAAAAGTTTCTTATAAAGATTTTACTGGAGATTATGAATGTTCTTTACAACAATAGCTAAAGGAGAGATTTTTATATCTCTGGTCAATAATGGATGTAATCTTATATGTAGGTTTGGTTTTTTTTTAGGCTGATGTCACTTTAAGATTGGTATGCAATTTTATTTTTTCTTTAGACAAATTAGAGGGAAGTTTGACAACATTATCAAAGACTTTCAGTTTGCAGCTGGATTATATATTATATTCCACAATTTTGATGCAGAGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGTGTAAGTTTCTGATGTTCAAGTTCTGTTTTTTCTTAGACATACTTAACAGTAAGTTGCCCGGACTCTTCAAAAATGATGCTGAAATAGAACAAATCTCATGTAATAATAATAACAATACTAATAATATTTTTTCTTCTAAATTTTCTGTGTCAGAATATCTTTTGATAAGTGGATGTATGTTGATTATGTAAATTCTTCTTATACTGATAATTATTGGTTGCATCGACCACTGCAGATGTTTGTTCCTTTTCTTCCCCCTCTTTCCCCTTTTTTGTTTGTTTTAGATTTTTTCCTCATTAGGAGTTGAAGTTGTCTAACTGCTATGGTTTTAATAGGTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTGGTATTTCTTTTCTTTTCCCCTTTGTGTGAATTGCTTTATTTTTCCGTGGATCTATTTTTTTACCCTCCATATACGAGGGTTAGTGATTTACTCAGATATTGTTGTGATACTCATGAGTGGTCCTTCTAAGCGGTTTTCTATGGAAATTGTGTTTTCTGGTTGGCAATTGTATTCCTGGCTCAACTCTTTTACACAAATATCATGGATAAAGATCTACTGTCTTGATGCACATCTCTTGCACAATTTCTTGCAAGCCTTGTCCATTCTGGTGGTCAAGTGTAAAGCATTATTCATTCTGGTGAATGGATCATGATACTCCTATTGTCTATGATTACGCCATATAAGATTAAGTTCAACTTATTCTCAGCCCCCACGGATCATATGCCCACTTTTTTTTTAATCAAACTAGATTGATCTCCTAATCAAGGCCTCTGGTTTCAAAAGCTAGTTATTTTTTCTCAAAGAGAATTTTCCATCTTTGCAGGAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGAGTAATGTCATGCTTCTTATTAACCATGAATCTTAGTAAGATTTCTTGATGATCTCTTGCTAACATCAAAATTTCTTCTGGTTCATAATTACAGGTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTT</genome_strand>
        <mrna_strand>ACGAGGNTTTTAAACTAACATTTATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT...............................................................................................................................................................................................................................................................................................................................................GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGA.............................................................................................GTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708912" ref_strand="+" ref_description="SGN-E708912 [FA42AE04]">
      <seq>cgatgaaactaacatggatgattgtgaacacaaccgtgaatctgaggttgctccggcgttaattgcagttcatccaactcagaaatccgtcgccgttgccgtcggttcgaatctccgcgtctttaatcttcagttgttcggtttcattggtggataattcaggagtgcacatgcataaggattcaataagagcaattcaatatggtgctgaaggaaagctgtttgtatctgctggcgatgacaaacttgttaagatttgggttactgattcttggcggtgcataagttcggtgtcatccgagaagagagttactgctgttgccatcagtaatgatgggcgttttgtatccttcgcggataaatttggtgtaatttatgcagttgaaatagaaggttctcatgaaaatcaaagtgtgcccaataagaaggcagtcccaattctcgcccactactgcagcatcattactagtctggagttttcaccagatggacgttacattattagtgccgatcgggacttcaaaatccgagtctctgtgttcccagaaaagccatcagatggggctcatgagattcaaagtttttgccttggccattcagagtttgtttcctgccttgccttcatctgcaaccaggattcccagcagtggtatttgctttcaggaggtggtgattcaactgtacgcttgtgggacttcacttgtggttctcttcttgatacctgtcatgttggagaggactattacagtcaaaagaaggaatagatgacaggttgctggctgtcactgatctttgtgccactccttggggatctctaatcgcggtggctattcagagcttggcaggcgtcatgcttttgagttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106361" stop="111420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106660" g_stop="106791" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106792" i_stop="107820" i_length="1029">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107821" g_stop="107980" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="292" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108316" g_stop="108496" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="473" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108981" g_stop="109037" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="530" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109131" g_stop="109201" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="601" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109202" i_stop="109982" i_length="781">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109983" g_stop="110061" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="680" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110540" g_stop="110596" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="737" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="110597" i_stop="110893" i_length="297">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110894" g_stop="110993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="837" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="110994" i_stop="111091" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111092" g_stop="111120" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="866" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E708912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106660" e_stop="106791"/>
          <exon e_start="107821" e_stop="107980"/>
          <exon e_start="108316" e_stop="108496"/>
          <exon e_start="108981" e_stop="109037"/>
          <exon e_start="109131" e_stop="109201"/>
          <exon e_start="109983" e_stop="110061"/>
          <exon e_start="110540" e_stop="110596"/>
          <exon e_start="110894" e_stop="110993"/>
          <exon e_start="111092" e_stop="111120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCAGTAAGTCACTATGCAAAAATAATCATTTTATTTTCTACTTTTTTTTATGATTATGATAATGTGTTCAAACTTAGTACTTGTCTATTTCGATGATGTTGACTTAGTTGGACATTGGCACGAAATTTAGGAAAAGAGAGATTTTCTGTAACTTGTGATAGTAAACCATGTATTCAAGTTAAATTGATGTCATTATTTTTGCGATAGACTAGTAATAGAGTGATAAAATGAAATTAGAGGTGTAAAATACTCCCTCGGTCCCAAAATAAGTGTTACTTAAAAAAATATCACAATCATTAAGAAATCAATAAATATGATGTGTAAACTACTTCTATTTGATAAATGTCTCTTGAGAATTGAACAATATTCAGAAAATGAACTATAAGTGTATAGTTGGAATGACATACTAATTATTGTCTTGAATTCTTAGAGTGATACTTATTTTTGGGACAATTTTTTTTGCTAAAGTGACACTTGGTTTGGAATGGGTGAGTATTATTAAAACTTGGTATAATACATAGACAGACTTTTAATTTGACCTCCACGGGTAGTTGAACTTCTGAACTTTCATCGCAACCATCTACACATTTCAAGATGATATAGGTGTGTATGGAGAACACCTTAACTTTGAAAATGCAAATCTAAACTCCTTTGAGGGGGTGCATTCTAGATGTGCATTTTCAAAGTTGGGGCTTTAGTTACCAGCTGAGACTAAGTTAAAGTGTTTATCTATGTATTATGTCTTAAAACTTCTCACACATTTTAAAGAAAAGTTTCTTATAAAGATTTTACTGGAGATTATGAATGTTCTTTACAACAATAGCTAAAGGAGAGATTTTTATATCTCTGGTCAATAATGGATGTAATCTTATATGTAGGTTTGGTTTTTTTTTAGGCTGATGTCACTTTAAGATTGGTATGCAATTTTATTTTTTCTTTAGACAAATTAGAGGGAAGTTTGACAACATTATCAAAGACTTTCAGTTTGCAGCTGGATTATATATTATATTCCACAATTTTGATGCAGAGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGTGTAAGTTTCTGATGTTCAAGTTCTGTTTTTTCTTAGACATACTTAACAGTAAGTTGCCCGGACTCTTCAAAAATGATGCTGAAATAGAACAAATCTCATGTAATAATAATAACAATACTAATAATATTTTTTCTTCTAAATTTTCTGTGTCAGAATATCTTTTGATAAGTGGATGTATGTTGATTATGTAAATTCTTCTTATACTGATAATTATTGGTTGCATCGACCACTGCAGATGTTTGTTCCTTTTCTTCCCCCTCTTTCCCCTTTTTTGTTTGTTTTAGATTTTTTCCTCATTAGGAGTTGAAGTTGTCTAACTGCTATGGTTTTAATAGGTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTGGTATTTCTTTTCTTTTCCCCTTTGTGTGAATTGCTTTATTTTTCCGTGGATCTATTTTTTTACCCTCCATATACGAGGGTTAGTGATTTACTCAGATATTGTTGTGATACTCATGAGTGGTCCTTCTAAGCGGTTTTCTATGGAAATTGTGTTTTCTGGTTGGCAATTGTATTCCTGGCTCAACTCTTTTACACAAATATCATGGATAAAGATCTACTGTCTTGATGCACATCTCTTGCACAATTTCTTGCAAGCCTTGTCCATTCTGGTGGTCAAGTGTAAAGCATTATTCATTCTGGTGAATGGATCATGATACTCCTATTGTCTATGATTACGCCATATAAGATTAAGTTCAACTTATTCTCAGCCCCCACGGATCATATGCCCACTTTTTTTTTAATCAAACTAGATTGATCTCCTAATCAAGGCCTCTGGTTTCAAAAGCTAGTTATTTTTTCTCAAAGAGAATTTTCCATCTTTGCAGGAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGAGTAATGTCATGCTTCTTATTAACCATGAATCTTAGTAAGATTTCTTGATGATCTCTTGCTAACATCAAAATTTCTTCTGGTTCATAATTACAGGTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGAGTAAGAATTTCTTGAAATTCTGGTGGTCCTAACACCTCGGTAGTGATGATCAAGCTGATCCAGAATAGTCTTTTTCTGTTGAAATATTGGTTATACTAATAAATTTTAAAATCTAGGGACAGTTCTCTGGTCATTATTGATAAAAGCCAATCTTGACATTTGATAAGGATACTTAACCCAAGAAAGGAGAAAAACATTTTGACCGGGATGATTTAGGTGGTCGTTTTGTGTCATCCAACTGTTACATCTGATGAAATATTTATACCATGCATGTCTTTGCCGAATTTATTCTTCTTTTACACGTTTTGTAGGTTTGTGAACACGGGTTGTGTGGAATTAGACAAAAGTGGCCTTATAATGACAATAACAAAAGCAAATACACAGTATATAAAACAAATAATGTGGTTCAATTAATGTGACCTAATCCTCGGTGTGGAGCAGAGATATTCCACTAATGAGTACAGAAAAGAGAGTACCAAAATTAGAGATAGAAACATGGCATTGGCTTTGGTGTTACTGTTATCTGTGTTTCTCTTTCGGTACCTGTGTTGACGACCTTCTTTCGTTTTTAAAAGTGCATTTTATTGCCTTCCAGCAATTCTATTCATCCTCCCCTCCCCTCCCCCCTCAAAAAAAAAATAATCAAAGGATAAATAAAAGATAGATGAAAATAGTTGTTGAGTATTGAACTTCGGCATACATTTCCACAGGAAGAAATTCTAGTTTTGACAATGCTTACTGGTTATCATGGTCATGGCTCATTTATTGTCTCAATTGTCAGGTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACTGTGAGTAAATTTTTAAAACGAACTAATTTTTTTAAAACCCAAATCACCTTTTTACGCCTTTTAAGGCTAAATTTGGAAAAGATAAGCAACTTTCTTATGATGGTATTCGGCCAACTTGCATGCACCTCGATTATTCAATTGTGTAACTGCCACCATAACTTTGGCAGATGGGAGGAAATAATCCCCCCCCCCCACACACACACACACATTTTTTTATTTATTTTGTTTGTGTGTGTCTGCTGAAATTTAAACCTGAGTTTTCATGATTCTCCTCCAACTTCATTGACCAGTGACTCCTAGGCCACACCCTCGAGTTCGATACAAAACAAAATTGGCAACGTAAACTACAAATACTTTTTCTGAAGTGTTTAGTTAAATGAAATTAATTACTTAAGAATTATATGAGTATTTTATTTTAATTTCATTTTTTTTATCTACTTTGACCATTGCTCTTTCTTTCTTTTTTTCTTTATGCCAGGTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAGGTAGCTTCATCTCTTTTGGAGTGAGATACTTGATAGATTTAATTTGGTTTTCTCTCTCCATCACAATAATTAATTGGCTGATTGAATCTCTTGCTAGAAAATAAATCTTTAGTGATTTGATTTAGCTGATTTTCAATCCATAAGCTTGTGGTGATTGTGTAATAGGGCGTGAAGCGATCGATCTTTCTTTGTTCCATTTCCTTTCTTCCTCTACGTTTCTTGTGTTGAAACAAGAAACTGCATTAAAGCTTTAATGTTTAGCTTAGTTCTTAATTTTCTCTGCAATTGTGAAGACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAGGTAAGTCTCTCGTTATGTCAACATGTTGACTTTTCATCCTTTAAAGAGCTCTATTAATTTGTTCTTGAATCATAATACCTTTCTCCGTTGAACTGTAGCTTGGCAGGCGTCATGCTTTTGAGTTGCA</genome_strand>
        <mrna_strand>CGATGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT...............................................................................................................................................................................................................................................................................................................................................GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGA.............................................................................................GTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAG.........................................................................................................................................................................................................................................................................................................GACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAG..................................................................................................CTTGGCAGGCGTCATGCTTTTGAGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308016" ref_strand="+" ref_description="SGN-E308016 [cLEY-14-C22]">
      <seq>atctgtgtttctctttcggtacctgtgttgacgaccttgtttcgtttttaaaagtgcattttattgccttccagcaattctattcatcctcccctcccctcccccctcaaaaaaaaaataatcaaaggataaataaaagatagatgaaaatagttggtgagtattgaacttcggcatacatttccacaggaagaaattctagttttgacaatgcttactggttatcatggtcatggctcatttattgtctcaattgtcaggtttgtttcctgccttgccttcatctgcaaccaggattcccagcagtggtatttgctttcaggaggtggtgattcaactgtacgcttgtgggacttcacttgtggttctcttcttgatacctgtcatgttggagagacaggactattacagtcaaaagaaggaatagatgacaggttgctggctgtcactgatctttgtgccactccttggggatctctaatcgcggtggctattcagagcttggcaggcgtcatgcttttgagttgcaacctttcagctaaatctctccatgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109423" stop="111449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109723" g_stop="110061" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110540" g_stop="110596" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="396" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110597" i_stop="110889" i_length="293">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110890" g_stop="110993" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="500" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110994" i_stop="111091" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111092" g_stop="111146" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="555" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E308016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109723" e_stop="110061"/>
          <exon e_start="110540" e_stop="110596"/>
          <exon e_start="110890" e_stop="110993"/>
          <exon e_start="111092" e_stop="111146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTGTTTCTCTTTCGGTACCTGTGTTGACGACCTTCTTTCGTTTTTAAAAGTGCATTTTATTGCCTTCCAGCAATTCTATTCATCCTCCCCTCCCCTCCCCCCTCAAAAAAAAAATAATCAAAGGATAAATAAAAGATAGATGAAAATAGTTGTTGAGTATTGAACTTCGGCATACATTTCCACAGGAAGAAATTCTAGTTTTGACAATGCTTACTGGTTATCATGGTCATGGCTCATTTATTGTCTCAATTGTCAGGTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACTGTGAGTAAATTTTTAAAACGAACTAATTTTTTTAAAACCCAAATCACCTTTTTACGCCTTTTAAGGCTAAATTTGGAAAAGATAAGCAACTTTCTTATGATGGTATTCGGCCAACTTGCATGCACCTCGATTATTCAATTGTGTAACTGCCACCATAACTTTGGCAGATGGGAGGAAATAATCCCCCCCCCCCACACACACACACACATTTTTTTATTTATTTTGTTTGTGTGTGTCTGCTGAAATTTAAACCTGAGTTTTCATGATTCTCCTCCAACTTCATTGACCAGTGACTCCTAGGCCACACCCTCGAGTTCGATACAAAACAAAATTGGCAACGTAAACTACAAATACTTTTTCTGAAGTGTTTAGTTAAATGAAATTAATTACTTAAGAATTATATGAGTATTTTATTTTAATTTCATTTTTTTTATCTACTTTGACCATTGCTCTTTCTTTCTTTTTTTCTTTATGCCAGGTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAGGTAGCTTCATCTCTTTTGGAGTGAGATACTTGATAGATTTAATTTGGTTTTCTCTCTCCATCACAATAATTAATTGGCTGATTGAATCTCTTGCTAGAAAATAAATCTTTAGTGATTTGATTTAGCTGATTTTCAATCCATAAGCTTGTGGTGATTGTGTAATAGGGCGTGAAGCGATCGATCTTTCTTTGTTCCATTTCCTTTCTTCCTCTACGTTTCTTGTGTTGAAACAAGAAACTGCATTAAAGCTTTAATGTTTAGCTTAGTTCTTAATTTTCTCTGCAATTGTGAAGACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAGGTAAGTCTCTCGTTATGTCAACATGTTGACTTTTCATCCTTTAAAGAGCTCTATTAATTTGTTCTTGAATCATAATACCTTTCTCCGTTGAACTGTAGCTTGGCAGGCGTCATGCTTTTGAGTTGCAACCTTTCAGCTAAATCTCTCCATGTT</genome_strand>
        <mrna_strand>ATCTGTGTTTCTCTTTCGGTACCTGTGTTGACGACCTTGTTTCGTTTTTAAAAGTGCATTTTATTGCCTTCCAGCAATTCTATTCATCCTCCCCTCCCCTCCCCCCTCAAAAAAAAAATAATCAAAGGATAAATAAAAGATAGATGAAAATAGTTGGTGAGTATTGAACTTCGGCATACATTTCCACAGGAAGAAATTCTAGTTTTGACAATGCTTACTGGTTATCATGGTCATGGCTCATTTATTGTCTCAATTGTCAGGTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAG.....................................................................................................................................................................................................................................................................................................ACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAG..................................................................................................CTTGGCAGGCGTCATGCTTTTGAGTTGCAACCTTTCAGCTAAATCTCTCCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544390" ref_strand="+" ref_description="SGN-E544390 [TUS-66-L5](-)">
      <seq>atgttgcaagagtggttccgattcctggggagacttttattcccacaagcttagcagctgcctcttcatcgaatcagttgtggatggtcatgggtgcatcgactctatgtacttcccattcagcacctttggcttgtgtgaaggttctcaatggtttctgcgagagcaaccaggactctgttgagcacgaggcacgtgttttagaagataaagatttaccaggtagtgaacaactccttcaaacgttgcaggggagttcgttcattgagaaagatgcactatcagcggctgcagaagcagtgaaaactgcaatgtgtaatctattaatcaagaagcagtacccttctgaaaatcgagagtttagaaagagagggaggaacgacaagagagtagataagaaaaaatgagatcggtggacaaagttacatggtatgtatgctggtgggaggttatcagagtatttataggccgagttgattttgctgccagcagtgagcaaggtagtggctttccagctcgagctcgtaaacagttctgctgatgaaagaaatcaaatttcgcctttgctgtgaagtagttttttttctgcttttaataacgatttgtgatatgatatggtattgtttacaaattttcaccctcattataacttgttttaattgtttaccttgcattagttctggtgcttactgtagcttatttttatgcttttgatattgccataatttaaaagccttcatctgttttggtccaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111203" stop="112553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111509" g_stop="112250" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="753" r_length="742" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="768"/>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E544390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111509" e_stop="112250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTCCGATTCCTGGGGAGACTTTTATTCCCACAAGCTTAGCAGCTGCCTCTTCATCGAATCAGTTGTGGATGGTCATGGGTGCATCGACTCTATGTACTTCCCATTCAGCACCTTTGGCTTGTGTGAAGGTTCTCAATGGTTTCTGCGAGAGCAACCAGGACTCTGTTGAGCACGAGGCACGTGTTTTAGAAGATAAAGATTTACCAGGTAGTGAACAACTCCTTCAAACGTTGCAGGGGAGTTCGTTCATTGAGAAAGATGCACTATCAGCGGCTGCAGAAGCAGTGAAAACTGCAATGTGTAATCTATTAATCAAGAAGCAGTACCCTTCTGAAAATCGAGAGTTTAGAAAGAGAGGGAGGAACGACAAGAGAGTAGATAAGAAAAAATGAGATCGGTGGACAAAGTTACATGGTATGTATGCTGGTGGGAGGTTATCAGAGTATTTATAGGCCGAGTTGATTTTGCTGCCAGCAGTGAGCAAGGTAGTGGCTTTCCAGCTCGAGCTCGTAAACAGTTCTGCTGATGAAAGAAATCAAATTTCGCCTTTGCTGTGAAGTAGTTTTTTTTCTGCTTTTAATAACGATTTGTGATATGATATGGTATTGTTTACAAATTTTCACCCTCATTATAACTTGTTTTAATTGTTTACCTTGCATTAGTTCTGGTGCTTACTGTAGCTTATTTTTATGCTTTTGATATTGCCATAATTTAAAAGCCTTCATCTGTTTTGGTCCA</genome_strand>
        <mrna_strand>GTGGTTCCGATTCCTGGGGAGACTTTTATTCCCACAAGCTTAGCAGCTGCCTCTTCATCGAATCAGTTGTGGATGGTCATGGGTGCATCGACTCTATGTACTTCCCATTCAGCACCTTTGGCTTGTGTGAAGGTTCTCAATGGTTTCTGCGAGAGCAACCAGGACTCTGTTGAGCACGAGGCACGTGTTTTAGAAGATAAAGATTTACCAGGTAGTGAACAACTCCTTCAAACGTTGCAGGGGAGTTCGTTCATTGAGAAAGATGCACTATCAGCGGCTGCAGAAGCAGTGAAAACTGCAATGTGTAATCTATTAATCAAGAAGCAGTACCCTTCTGAAAATCGAGAGTTTAGAAAGAGAGGGAGGAACGACAAGAGAGTAGATAAGAAAAAATGAGATCGGTGGACAAAGTTACATGGTATGTATGCTGGTGGGAGGTTATCAGAGTATTTATAGGCCGAGTTGATTTTGCTGCCAGCAGTGAGCAAGGTAGTGGCTTTCCAGCTCGAGCTCGTAAACAGTTCTGCTGATGAAAGAAATCAAATTTCGCCTTTGCTGTGAAGTAGTTTTTTTTCTGCTTTTAATAACGATTTGTGATATGATATGGTATTGTTTACAAATTTTCACCCTCATTATAACTTGTTTTAATTGTTTACCTTGCATTAGTTCTGGTGCTTACTGTAGCTTATTTTTATGCTTTTGATATTGCCATAATTTAAAAGCCTTCATCTGTTTTGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312296" ref_strand="+" ref_description="SGN-E312296 [cTOA-5-L14]">
      <seq>ttaaaagcagaaaaaaaactacttcacagcaaaggcgaaatttgatttctttcatcagcagaactgtttacgagctcgagctggaaagccactaccttgctcactgctggcagcaaaatcaactcggcctataaatactctgataacctcccaccagcatacataccatgtaactttgtccaccgatctcattttttcttatctactctcttgtcgttcctccctctctttctaaactctcgattttcagaagggtactgcttcttgattaatagattacacattgcagttttcactgcttctgcagccgctgatagtgcatctttctcaatgaacgaactcccctgcaacgtttgaaggagttgttcactacctggtaaatctttatcttctaaaacacgtgcctcgtgctcaacagagtcctggttgctctcgcagaaaccattgagaaccttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="-" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112392" stop="111334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112092" g_stop="111634" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="-" ref_id="SGN-E312296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112092" e_stop="111634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGCAGAAAAAAAACTACTTCACAGCAAAGGCGAAATTTGATTTCTTTCATCAGCAGAACTGTTTACGAGCTCGAGCTGGAAAGCCACTACCTTGCTCACTGCTGGCAGCAAAATCAACTCGGCCTATAAATACTCTGATAACCTCCCACCAGCATACATACCATGTAACTTTGTCCACCGATCTCATTTTTTCTTATCTACTCTCTTGTCGTTCCTCCCTCTCTTTCTAAACTCTCGATTTTCAGAAGGGTACTGCTTCTTGATTAATAGATTACACATTGCAGTTTTCACTGCTTCTGCAGCCGCTGATAGTGCATCTTTCTCAATGAACGAACTCCCCTGCAACGTTTGAAGGAGTTGTTCACTACCTGGTAAATCTTTATCTTCTAAAACACGTGCCTCGTGCTCAACAGAGTCCTGGTTGCTCTCGCAGAAACCATTGAGAACCTTCACA</genome_strand>
        <mrna_strand>TTAAAAGCAGAAAAAAAACTACTTCACAGCAAAGGCGAAATTTGATTTCTTTCATCAGCAGAACTGTTTACGAGCTCGAGCTGGAAAGCCACTACCTTGCTCACTGCTGGCAGCAAAATCAACTCGGCCTATAAATACTCTGATAACCTCCCACCAGCATACATACCATGTAACTTTGTCCACCGATCTCATTTTTTCTTATCTACTCTCTTGTCGTTCCTCCCTCTCTTTCTAAACTCTCGATTTTCAGAAGGGTACTGCTTCTTGATTAATAGATTACACATTGCAGTTTTCACTGCTTCTGCAGCCGCTGATAGTGCATCTTTCTCAATGAACGAACTCCCCTGCAACGTTTGAAGGAGTTGTTCACTACCTGGTAAATCTTTATCTTCTAAAACACGTGCCTCGTGCTCAACAGAGTCCTGGTTGCTCTCGCAGAAACCATTGAGAACCTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739174" ref_strand="+" ref_description="SGN-E739174 [LC16BF06]">
      <seq>cttttttcagtgtatgcatcacttggaactgcaaatcggctctctgcattccttgcagtcagaagaagcaaaatgatggttcagaccttatatatttcaaggttgtaggtatggaaccttctgaagaacctgttctaaaagtcaaccgtactcgaaccgcccttgtacttggagggaatgtaccttctgctgttcctccagatttcttgattcctcggccacaaggttccctgcctttacaagtgagcacggtgaagactttagcctccatacttataccaccattatgtccatcagccctttcatcaaaatttcgggttgttgtgttgttgcatggcttgactggatgtgggaagagaactgtggttaaatttgttgctcgtcagttaggcctccatgtagtggaatacaattgtcagagcatatttgcaaattctgatagaaaaacatctgctgcccttgctgaagccttcagcatggctcgcaggtattttggactgcctaggatttattgtgtattacctaactgcgttggagctctaccatcaggttgttgattaaaattggaaatcaatatgtcaggaacctgattttcattgttccctgttagattgactacataaggctaacttaagattttctaacttatacaatgcgactcagccctcaattatttgtcttttcctctaccttaatgtcctgccttgtaggaataactttttgtaattgagaacatacaatagagaattgatcacaggtttcatgagaataaattacatatgaaaatcttcacgtttaaataattacttgttattatgattctcatctaaatttcatgattgtcctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121098" stop="123026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121397" g_stop="121497" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121498" i_stop="121579" i_length="82">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121580" g_stop="121823" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="345" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121824" i_stop="122222" i_length="399">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122223" g_stop="122727" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="850" r_length="505" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E739174" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121397" e_stop="121497"/>
          <exon e_start="121580" e_stop="121823"/>
          <exon e_start="122223" e_stop="122727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTCAGTGTATGCATCAATTGGAACTGCAAATCGGCTCTCTGCATTCCTTGCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAGGTTTTAGTTTTATTTCTTAATGTCACAGGTGCATGAGTAACTTAAATGCCTTGACACTCACTCTTATTAGTAAGCATCCCAGGTTGTAGGTATGGAACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTGGTACGTTTAGACTTTGTCATCTGTTGGTTAATTGGAAAGATGCTACTTACTATATGCATTTTGATCTTCTTTTCTTTTCTTAACTGCTTTATGTTATTTTCTTTTATCTTGTTTTACTCGACGTGCAGTAGCATGATGGTTCTCAAGTTTGTTACATATCTGCGCATAATTTCTAGGTCTGGAGTTCAGCGTTTAGATTTTTAAAAAAATGAACTTGGTTTATATGTCTATAGTGGATGAGTAGGATAATGTTTAAGTTATTAAAAATGTGATAATATAGTTTTCTTTAATAGATTTTTTACATGTACTTTACAATTTTTTTTTATACAGGTAGAAGTTACAGCTTCATCTATTTATGAAGTTATTGTTCATTGATGGGTGATTTGAAATTTCCTGCAGGATGTGGGAAGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGGTATTTTGGACTGCCTAGGATTTATTGTGTATTACCTAACTGCGTTGGAGCTCTACCATCAGGTTGTTGATTAAAATTGGAAATCAATATGTCAGGAACCTGATTTTCATTGTTCCCTGTTAGATTGACTACATAAGGCTAACTTAAGATTTTCTAACTTATACAATGCGACTCAGCCCTCAATTATTTGTCTTTTCCTCTACCTTAATGTCCTGCCTTGTAGGAATAACTTTTTGTAATTGAGAACATACAATAGAGAATTGATCACAGGTTTCATGAGAATAAATTACATATGAAAATCTTCACGTTTAAGTAATTACTTGTTATTATGATTCTCATCTATATTTCATGATTGTCTTTAAA</genome_strand>
        <mrna_strand>CTTTTTTCAGTGTATGCATCACTTGGAACTGCAAATCGGCTCTCTGCATTCCTTGCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAG..................................................................................GTTGTAGGTATGGAACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGGAAGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGGTATTTTGGACTGCCTAGGATTTATTGTGTATTACCTAACTGCGTTGGAGCTCTACCATCAGGTTGTTGATTAAAATTGGAAATCAATATGTCAGGAACCTGATTTTCATTGTTCCCTGTTAGATTGACTACATAAGGCTAACTTAAGATTTTCTAACTTATACAATGCGACTCAGCCCTCAATTATTTGTCTTTTCCTCTACCTTAATGTCCTGCCTTGTAGGAATAACTTTTTGTAATTGAGAACATACAATAGAGAATTGATCACAGGTTTCATGAGAATAAATTACATATGAAAATCTTCACGTTTAAATAATTACTTGTTATTATGATTCTCATCTAAATTTCATGATTGTCCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735540" ref_strand="+" ref_description="SGN-E735540 [LC02AC05]">
      <seq>atcttttcagtgtatgcatcaaattggaactgcaaatacggctctctgcattccttgcagtcagaagaagcaaaatgatggttcagaccttatatatttcaaggttgtaggtatggaaccttctgaagaacctgttctaaaagtcaaccgtactcgaaccgcccttgtacttggagggaatgtaccttctgctgttcctccagatttcttgattcctcggccacaaggttccctgcctttacaagtgagcacggtgaagactttagcctccatacttataccaccattatgtccatcagccctttcatcaaaatttcgggttgttgtgttgttgcatggcttgactggatgtgggaagagaactgtggttaaatttgttgctcgtcagttaggcctccatgtagtggaatacaattgtcagagcatatttgcaaattctgatagaaaaacatctgctgcccttgctgaagccttcagcatggctcgcaggtattttggactgcctaggatttattgtgtattacctaactgcgttggagctctaccatcaggttgttgattaaaattggaaatcaatatgtcaggaacctgattttcattgttccctgttagattgactacataaggctaacttaagattttctaacttatacaatgcgactcagccctcaattatttgtcttttcctctaccttaatgtcctgccttgtaagaataactttttgtaattgagaacatacaatagagaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121097" stop="122929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121397" g_stop="121497" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121498" i_stop="121579" i_length="82">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121580" g_stop="121823" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="347" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121824" i_stop="122222" i_length="399">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122223" g_stop="122629" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="754" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E735540" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121397" e_stop="121497"/>
          <exon e_start="121580" e_stop="121823"/>
          <exon e_start="122223" e_stop="122629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTCAGTGTATGCATC-AATTGGAACTGCAAAT-CGGCTCTCTGCATTCCTTGCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAGGTTTTAGTTTTATTTCTTAATGTCACAGGTGCATGAGTAACTTAAATGCCTTGACACTCACTCTTATTAGTAAGCATCCCAGGTTGTAGGTATGGAACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTGGTACGTTTAGACTTTGTCATCTGTTGGTTAATTGGAAAGATGCTACTTACTATATGCATTTTGATCTTCTTTTCTTTTCTTAACTGCTTTATGTTATTTTCTTTTATCTTGTTTTACTCGACGTGCAGTAGCATGATGGTTCTCAAGTTTGTTACATATCTGCGCATAATTTCTAGGTCTGGAGTTCAGCGTTTAGATTTTTAAAAAAATGAACTTGGTTTATATGTCTATAGTGGATGAGTAGGATAATGTTTAAGTTATTAAAAATGTGATAATATAGTTTTCTTTAATAGATTTTTTACATGTACTTTACAATTTTTTTTTATACAGGTAGAAGTTACAGCTTCATCTATTTATGAAGTTATTGTTCATTGATGGGTGATTTGAAATTTCCTGCAGGATGTGGGAAGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGGTATTTTGGACTGCCTAGGATTTATTGTGTATTACCTAACTGCGTTGGAGCTCTACCATCAGGTTGTTGATTAAAATTGGAAATCAATATGTCAGGAACCTGATTTTCATTGTTCCCTGTTAGATTGACTACATAAGGCTAACTTAAGATTTTCTAACTTATACAATGCGACTCAGCCCTCAATTATTTGTCTTTTCCTCTACCTTAATGTCCTGCCTTGTAGGAATAACTTTTTGTAATTGAGAACATACAATAGAGAATTGAT</genome_strand>
        <mrna_strand>ATCTTTTCAGTGTATGCATCAAATTGGAACTGCAAATACGGCTCTCTGCATTCCTTGCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAG..................................................................................GTTGTAGGTATGGAACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGGAAGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGGTATTTTGGACTGCCTAGGATTTATTGTGTATTACCTAACTGCGTTGGAGCTCTACCATCAGGTTGTTGATTAAAATTGGAAATCAATATGTCAGGAACCTGATTTTCATTGTTCCCTGTTAGATTGACTACATAAGGCTAACTTAAGATTTTCTAACTTATACAATGCGACTCAGCCCTCAATTATTTGTCTTTTCCTCTACCTTAATGTCCTGCCTTGTAAGAATAACTTTTTGTAATTGAGAACATACAATAGAGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374555" ref_strand="+" ref_description="SGN-E374555 [TUS-15-D9]">
      <seq>gcactctcatatattggtcaaaatttggtggatacggttcatttttacctacatatcagcgttcaccttcttggacttgtacaaagactccaccagatgcctacaacaataacagatcaacatcaccgagcagtttgcgcccagagggtggtcgtcgaccctcatcagcctcctcatctgcttctctatcaggaaagcccctagcatcttctgcctattcatcaacaatagtacctacactgaaggctccagcagctaatgggaaaacaaattcatctctgcaacctgcgcaagatgaagactccacttcaagaagtgaactagtcaagaagccaacaaatctctcagacaagaaaactcccaagttgcatgcgagaattggtattaaaaaattctcaacccaaaagaaagctgaaatctacagcggccttggccttgatgtatctccatcatcgtcgctggatgatagcccgataagcagtgaaggcttatcccatgaccttagggattcccgatatgaatctccaacaagtatacttcagaattctggatcaagcgaaagtacgggtatctatttccaagcggcattaaagtttctccatggtgcctccttactagaattagacagctccaagcatggtgaacagaaccagtcaaggagcatctatagcagcactgcaaaactctgccagttttgtggtcatgaatatgagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134095" stop="139834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134395" g_stop="134525" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="146" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134526" i_stop="134797" i_length="272">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134798" g_stop="135193" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="542" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135194" i_stop="138042" i_length="2849">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138043" g_stop="138191" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="691" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139507" g_stop="139534" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="719" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E374555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134395" e_stop="134525"/>
          <exon e_start="134798" e_stop="135193"/>
          <exon e_start="138043" e_stop="138191"/>
          <exon e_start="139507" e_stop="139534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAGGTAGCTACTGTTGAGAATATAAATAAGTAAATAAAAGTGTGCTCTCTATAATAACATAAGCTTTTAAATGTGATGGTCACACACTTCCACTGCTCCACATAGTATCAAAGCAGATAGAGGTCCTGGGATCGAATAATTGATTAAGCTTTTTAGATGAGATAGTCACATACTTCAACTACCTTCTAATGAAGTTGTGTTTTATTAACAAGTACAATTGCTTTCCTCACATATTTCTACTTTGACTAAGCAATATGCATCATCTTGTTATGCAGGGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACTAGTCAAGAAGCCAACAAATCTCTCAGACAAGAAAACTCCCAAGTTGCATGCGAGAATTGGTATTAAAAAATTCTCAACCCAAAAGAAAGCTGAAATCTACAGCGGCCTTGGCCTTGATGTATCTCCATCATCGTCGCTGGATGATAGCCCGATAAGCAGTGAAGGCTTATCCCATGACCTTAGGGATTCCCGATATGAATCTCCAACAAGTATACTTCAGGTGAATGCTCTCACCCTCTGCTAAAAGCGTAATCTTTTTCTTTACATCTCTCCTTTTTTTGGTCAACTTGACCTTGGGTTCTGCATTTTTTTCGTCCATGTATTGAGGCAGATTATGACCTCATATCCAATGCATGATGGACTATTGTTATCCCCGCTTTCGGATGATCTGCTTTGCTTGACTGAAAAAGAAAAGGTACGGGGGGGATCCACATCTGAATGTATGATCCAGGAAAGCCTAGAAACTTCTGTTACCTTAGTAAATGGAGCTCATTATGCAAATAGGAGATCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGGCGTTCCAAATAGCTCAGTTGTAGAGAAGAGGAGACATAAAAACAAAGAGAAGAAAATTTCTCATGATAACCACTCTGATGGAGGTATTCATCTTTAGTAGTCACATTTTGAACTTGCTGCCATCGTGAAATTCTGGTCTTTATCTTTATTTTCTGTATGGGATGTTTGACAGGTACGAAGGATGCAAATACAAGGAACACAAGTGAAGTGGAATCAGATGTATCTTCCAAAAAAATTATACAAGATGATGCACTCGATGACGAGAACCAGACCTTTTGCCCTGTTGTTGAAAAGTCTAGATGGAGTTCAAGCAGTAAAATGCCAGAGATGATTCGTGACAAATGTAAGAACAGGGACTCAGAGGATGATTCAAAGAAAGACTTGGTTTCAGCAAAGAACCCAGAAGCTTATATTTCCGATGTGTCAACGCATAAGGGGAAGTGTGACAATAATGATTCTCCGATTAAGAGAAAAGGGAGAGAACTGCGAGATTCCTTGACATGTAATCCCCAGGATTCTATGGAAAAAATATGTGATGACATCTCTAGGAAGGAAAAGGTAGCAAGGGTCTCCTTGTCTGACCGGAAGGACACTAGTGCAAGCAAAGGTAGTGCTGGAACAGGTCAAGTTAAAAAGGAACAGCAGGCTGGGCAAGATCTGGATAGTACTCTATCTTTGTTGAGTGTTAAAGCTGCAGATTCTTCACAAAAGGATCTATGCAATTCGCGACCTTCTGTTGCTCCCTCTTCAGCCTTACCCACTTCTAGTCCCAAGAGGTCTTCTGATGGTGAAAATGATGTGTTCTCCAATAAATCCAGTATGGTTAAGAAGGATAATGCCTGCAATGGCAAGAGTTATGATCTATTATCTGAAGCTGAATTAGAGGAGAAAGATGTTCATCGTGAATCAGGTAAAAAAGTCAAAGCAAAGTCCATGGTTTCTGGTTATGCAACTCAACAGGATACCGATGTAAGTGCAGATCCCTTACGTCAAGCTAGTCACTTTGCTTGCAAGACTGGAAACTCAGACCAAGGCTCCGATAAGGAGAGAAAGAATGACCATCAGTTTCAGAATAGTGGGTCTGTGTCAAATAGGAAAAGAGGTTCCTCGTCACGGCGTAAAGAGAAGAATCGGGCTCCAAAATCTGATTCTGACCAATGTAAGACCAAAGATACTGATATCTTAAATTTATCTTCAGAGCAAATGCCATTTAATGAAGAGAAGACGGCACCAGGAAAAAATAAGTCTCAGGGGAAATCTGTTGTTGGTTCAGATAGATTAAAAAAGAGTTCTAAGAAGGATCCTTCTGGAAAATTATTGGAAAAAAATGTTAAAGGAGATAATGAATCAAGATTTGTTCATCGTGATGATGCAGAAGTTCAAATGGATGTTGTGGCCCGCCTGGATAAAAGGCAGGCTACACTACCTGAACGTGATGATGAGAGATCATCTAAGGTCATTTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAGGTTAAAAGAATTTACACTTATGTCCAAAGAAAGGAGGGGATAAAATATGGTGGATATGCTTTATTATTTGTTTCATTTATTTATTTATGTTGGCATAACTTTGGCTATTTGTTTTAGAATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCAGTGAGTTCCCTTTTAATTTGAACATGGGTTATTCATTGAGATGACATGCAAAGAACGGTTGCAAGCATGAATGTATTGTGTTAGAAAAGATTGTAGAGTATTTATTATTCCTACATGCCTAAGTTCTTAGAATTTGAGACACGTCTGCAGCATACCCAATGTAGTCGTTCATGTAAATCTCCCATTAAAGACCCAGTCTGGCCAAGTATGAAGTGTCTCAGCAACTCTTAGCAAATGCCATGCTGTTGAATAGCAAATAATTCCCTTAACTCAGACCTTACCCCTTAATAGCATTCTTTTACCCCCTCCATTTCAATTTGTTTGTCCTACTTCCCTTTTTAGTCCGTTTAAAATAAGAATGTCTCTTCTTTTTCGGCAACTCTTTGATTTCAACTTTCCTCATGGCATGTTTAAGAGCACATGATTAAAGAACATTTTGGTACATTCTGCATATCTTTAGTTTAAGACAACAAGCTTCAAAATTCTTCTTCATTTCTTAAACGCGGTGCCAAGTTAAAACTAGAGACGAACTAATTGAAACGGAGGGCGTATTTTTTTGAGTCTTTATTTGACTTATGAGAATGATGTTTCAAAATTACAGAATTTTCCTTGACACTATGTTTTCCCATTCTTTACATTTATGAAGGATCTAAGAATAATTGAAGATTTGGATTTTCTTGAAGCGACACTAGCTGTAAAATTTGGTTGATATGTTGGTAATTGTTCTGTATCAGCTACTTTATAAGTGTTGAACTTGTTAGCATATTCGTTTCTTGTTGACAACAACATTAGCAGCCAGATATAACAGTACAATTTTAGTGCGATTAAAAAATTTAATCCAAAGTTGTGTTTCAGTTTATATTCAGTTATACCTCATATAATTTTTGGACGCAATTTCCTTCTCTGGTGTCATGTATTATGAAAAACTTTGTGACCTAATCTACAACAATATTCCTGGTGTAATCCCACAAAGTGGGGTACACAAACCTTACCCCACCTTGGAGATAGAGAGGCTATTCCCACAGATACTGGTCTCTTTGTGACCTAATCTATTTTTCTGAATATGATAGTGCTTTTCAACTTCCACTATTTGAAGAGATGTCTATGCAGCCAAGGTTTATGGTGCTTTTTTACTCAATTGGAAGAGCAAATTTCATTGGGTAGTACTTTTCAAACATGTGGAATTTATGCTACTTATGGATATAGTTTGATGTATTTTCGATGTCAGTTGTTCCAATTTAATGAAAAACTTGACCTACCATCTGAAATGTCAACAAGGATGTATGTTGATTGTTGGTCCTTCTTATGTGCATAGGTTTTGTGGTCATGAATATGAGAAATTG</genome_strand>
        <mrna_strand>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAG................................................................................................................................................................................................................................................................................GGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACTAGTCAAGAAGCCAACAAATCTCTCAGACAAGAAAACTCCCAAGTTGCATGCGAGAATTGGTATTAAAAAATTCTCAACCCAAAAGAAAGCTGAAATCTACAGCGGCCTTGGCCTTGATGTATCTCCATCATCGTCGCTGGATGATAGCCCGATAAGCAGTGAAGGCTTATCCCATGACCTTAGGGATTCCCGATATGAATCTCCAACAAGTATACTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGGTCATGAATATGAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378902" ref_strand="+" ref_description="SGN-E378902 [TUS-1-D22]">
      <seq>gcactctcatatattggtcaaaatttggtggatacggttcatttttacctacatatcagcgttcaccttcttggacttgtacaaagactccaccagatgcctacaacaataacagatcaacatcaccgagcagtttgcgcccagagggtggtcgtcgaccctcatcagcctcctcatctgcttctctatcaggaaagcccctagcatcttctgcctattcatcaacaatagtacctacactgaaggctccagcagctaatgggaaaacaaattcatctctgcaacctgcgcaagatgaagactccacttcaagaagtgaactagtcaagaagccaacaaatctctcagacaagaaaactcccaagttgcatgcgagaattggtattaaaaaattctcaacccaaaagaaagctgaaatctacagcggccttggccttgatgtatctccatcatcgtcgctggatgatagcccgataagcagtgaaggcttatcccatgaccttagggattcccgatatgaatctccaacaagtatacttcagaattctggnatcagcgaaagtacgggtatctatttccaagcggcattaaagtttctccatggtgcctccttactagaattagacagctccaagcatggtgaacagaaccagtcaaggagcatctatagcagcactgcaaaactctgccagttttgtggtcatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134095" stop="139826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134395" g_stop="134525" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="146" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134526" i_stop="134797" i_length="272">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134798" g_stop="135193" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="542" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135194" i_stop="138042" i_length="2849">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138043" g_stop="138191" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="691" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139507" g_stop="139526" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="711" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E378902" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134395" e_stop="134525"/>
          <exon e_start="134798" e_stop="135193"/>
          <exon e_start="138043" e_stop="138191"/>
          <exon e_start="139507" e_stop="139526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAGGTAGCTACTGTTGAGAATATAAATAAGTAAATAAAAGTGTGCTCTCTATAATAACATAAGCTTTTAAATGTGATGGTCACACACTTCCACTGCTCCACATAGTATCAAAGCAGATAGAGGTCCTGGGATCGAATAATTGATTAAGCTTTTTAGATGAGATAGTCACATACTTCAACTACCTTCTAATGAAGTTGTGTTTTATTAACAAGTACAATTGCTTTCCTCACATATTTCTACTTTGACTAAGCAATATGCATCATCTTGTTATGCAGGGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACTAGTCAAGAAGCCAACAAATCTCTCAGACAAGAAAACTCCCAAGTTGCATGCGAGAATTGGTATTAAAAAATTCTCAACCCAAAAGAAAGCTGAAATCTACAGCGGCCTTGGCCTTGATGTATCTCCATCATCGTCGCTGGATGATAGCCCGATAAGCAGTGAAGGCTTATCCCATGACCTTAGGGATTCCCGATATGAATCTCCAACAAGTATACTTCAGGTGAATGCTCTCACCCTCTGCTAAAAGCGTAATCTTTTTCTTTACATCTCTCCTTTTTTTGGTCAACTTGACCTTGGGTTCTGCATTTTTTTCGTCCATGTATTGAGGCAGATTATGACCTCATATCCAATGCATGATGGACTATTGTTATCCCCGCTTTCGGATGATCTGCTTTGCTTGACTGAAAAAGAAAAGGTACGGGGGGGATCCACATCTGAATGTATGATCCAGGAAAGCCTAGAAACTTCTGTTACCTTAGTAAATGGAGCTCATTATGCAAATAGGAGATCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGGCGTTCCAAATAGCTCAGTTGTAGAGAAGAGGAGACATAAAAACAAAGAGAAGAAAATTTCTCATGATAACCACTCTGATGGAGGTATTCATCTTTAGTAGTCACATTTTGAACTTGCTGCCATCGTGAAATTCTGGTCTTTATCTTTATTTTCTGTATGGGATGTTTGACAGGTACGAAGGATGCAAATACAAGGAACACAAGTGAAGTGGAATCAGATGTATCTTCCAAAAAAATTATACAAGATGATGCACTCGATGACGAGAACCAGACCTTTTGCCCTGTTGTTGAAAAGTCTAGATGGAGTTCAAGCAGTAAAATGCCAGAGATGATTCGTGACAAATGTAAGAACAGGGACTCAGAGGATGATTCAAAGAAAGACTTGGTTTCAGCAAAGAACCCAGAAGCTTATATTTCCGATGTGTCAACGCATAAGGGGAAGTGTGACAATAATGATTCTCCGATTAAGAGAAAAGGGAGAGAACTGCGAGATTCCTTGACATGTAATCCCCAGGATTCTATGGAAAAAATATGTGATGACATCTCTAGGAAGGAAAAGGTAGCAAGGGTCTCCTTGTCTGACCGGAAGGACACTAGTGCAAGCAAAGGTAGTGCTGGAACAGGTCAAGTTAAAAAGGAACAGCAGGCTGGGCAAGATCTGGATAGTACTCTATCTTTGTTGAGTGTTAAAGCTGCAGATTCTTCACAAAAGGATCTATGCAATTCGCGACCTTCTGTTGCTCCCTCTTCAGCCTTACCCACTTCTAGTCCCAAGAGGTCTTCTGATGGTGAAAATGATGTGTTCTCCAATAAATCCAGTATGGTTAAGAAGGATAATGCCTGCAATGGCAAGAGTTATGATCTATTATCTGAAGCTGAATTAGAGGAGAAAGATGTTCATCGTGAATCAGGTAAAAAAGTCAAAGCAAAGTCCATGGTTTCTGGTTATGCAACTCAACAGGATACCGATGTAAGTGCAGATCCCTTACGTCAAGCTAGTCACTTTGCTTGCAAGACTGGAAACTCAGACCAAGGCTCCGATAAGGAGAGAAAGAATGACCATCAGTTTCAGAATAGTGGGTCTGTGTCAAATAGGAAAAGAGGTTCCTCGTCACGGCGTAAAGAGAAGAATCGGGCTCCAAAATCTGATTCTGACCAATGTAAGACCAAAGATACTGATATCTTAAATTTATCTTCAGAGCAAATGCCATTTAATGAAGAGAAGACGGCACCAGGAAAAAATAAGTCTCAGGGGAAATCTGTTGTTGGTTCAGATAGATTAAAAAAGAGTTCTAAGAAGGATCCTTCTGGAAAATTATTGGAAAAAAATGTTAAAGGAGATAATGAATCAAGATTTGTTCATCGTGATGATGCAGAAGTTCAAATGGATGTTGTGGCCCGCCTGGATAAAAGGCAGGCTACACTACCTGAACGTGATGATGAGAGATCATCTAAGGTCATTTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAGGTTAAAAGAATTTACACTTATGTCCAAAGAAAGGAGGGGATAAAATATGGTGGATATGCTTTATTATTTGTTTCATTTATTTATTTATGTTGGCATAACTTTGGCTATTTGTTTTAGAATTCTGG-ATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCAGTGAGTTCCCTTTTAATTTGAACATGGGTTATTCATTGAGATGACATGCAAAGAACGGTTGCAAGCATGAATGTATTGTGTTAGAAAAGATTGTAGAGTATTTATTATTCCTACATGCCTAAGTTCTTAGAATTTGAGACACGTCTGCAGCATACCCAATGTAGTCGTTCATGTAAATCTCCCATTAAAGACCCAGTCTGGCCAAGTATGAAGTGTCTCAGCAACTCTTAGCAAATGCCATGCTGTTGAATAGCAAATAATTCCCTTAACTCAGACCTTACCCCTTAATAGCATTCTTTTACCCCCTCCATTTCAATTTGTTTGTCCTACTTCCCTTTTTAGTCCGTTTAAAATAAGAATGTCTCTTCTTTTTCGGCAACTCTTTGATTTCAACTTTCCTCATGGCATGTTTAAGAGCACATGATTAAAGAACATTTTGGTACATTCTGCATATCTTTAGTTTAAGACAACAAGCTTCAAAATTCTTCTTCATTTCTTAAACGCGGTGCCAAGTTAAAACTAGAGACGAACTAATTGAAACGGAGGGCGTATTTTTTTGAGTCTTTATTTGACTTATGAGAATGATGTTTCAAAATTACAGAATTTTCCTTGACACTATGTTTTCCCATTCTTTACATTTATGAAGGATCTAAGAATAATTGAAGATTTGGATTTTCTTGAAGCGACACTAGCTGTAAAATTTGGTTGATATGTTGGTAATTGTTCTGTATCAGCTACTTTATAAGTGTTGAACTTGTTAGCATATTCGTTTCTTGTTGACAACAACATTAGCAGCCAGATATAACAGTACAATTTTAGTGCGATTAAAAAATTTAATCCAAAGTTGTGTTTCAGTTTATATTCAGTTATACCTCATATAATTTTTGGACGCAATTTCCTTCTCTGGTGTCATGTATTATGAAAAACTTTGTGACCTAATCTACAACAATATTCCTGGTGTAATCCCACAAAGTGGGGTACACAAACCTTACCCCACCTTGGAGATAGAGAGGCTATTCCCACAGATACTGGTCTCTTTGTGACCTAATCTATTTTTCTGAATATGATAGTGCTTTTCAACTTCCACTATTTGAAGAGATGTCTATGCAGCCAAGGTTTATGGTGCTTTTTTACTCAATTGGAAGAGCAAATTTCATTGGGTAGTACTTTTCAAACATGTGGAATTTATGCTACTTATGGATATAGTTTGATGTATTTTCGATGTCAGTTGTTCCAATTTAATGAAAAACTTGACCTACCATCTGAAATGTCAACAAGGATGTATGTTGATTGTTGGTCCTTCTTATGTGCATAGGTTTTGTGGTCATGAATATG</genome_strand>
        <mrna_strand>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAG................................................................................................................................................................................................................................................................................GGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACTAGTCAAGAAGCCAACAAATCTCTCAGACAAGAAAACTCCCAAGTTGCATGCGAGAATTGGTATTAAAAAATTCTCAACCCAAAAGAAAGCTGAAATCTACAGCGGCCTTGGCCTTGATGTATCTCCATCATCGTCGCTGGATGATAGCCCGATAAGCAGTGAAGGCTTATCCCATGACCTTAGGGATTCCCGATATGAATCTCCAACAAGTATACTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGGNATC-AGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGGTCATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204177" ref_strand="+" ref_description="SGN-E204177 [cLEC-13-A20]">
      <seq>gcactctcatatattggtcaaaatttggtggatacgggtcatttttacctacatatcagcgttcaccttcttggacttgtacaaagactccaccagatgcctacaacaataacagatcaacatcaccgagcagtttgcgcccagagggtggtcgtcgaccctcatcagccttctcatctgcttctctatcaagaaagcccctagcatcttctgcctattcatcaacaatagtacctacactgaaggctccagcagctaatgggaaaacaaattcatctctgcaacctgcgcaagatgaaaactccacttcaagaagtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134095" stop="135273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134395" g_stop="134525" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="146" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134526" i_stop="134797" i_length="272">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134798" g_stop="134973" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="322" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E204177" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134395" e_stop="134525"/>
          <exon e_start="134798" e_stop="134973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAGGTAGCTACTGTTGAGAATATAAATAAGTAAATAAAAGTGTGCTCTCTATAATAACATAAGCTTTTAAATGTGATGGTCACACACTTCCACTGCTCCACATAGTATCAAAGCAGATAGAGGTCCTGGGATCGAATAATTGATTAAGCTTTTTAGATGAGATAGTCACATACTTCAACTACCTTCTAATGAAGTTGTGTTTTATTAACAAGTACAATTGCTTTCCTCACATATTTCTACTTTGACTAAGCAATATGCATCATCTTGTTATGCAGGGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACT</genome_strand>
        <mrna_strand>GGTCAAAATTTGGTGGATACGGGTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAG................................................................................................................................................................................................................................................................................GGTGGTCGTCGACCCTCATCAGCCTTCTCATCTGCTTCTCTATCAAGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAAACTCCACTTCAAGAAGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541807" ref_strand="+" ref_description="SGN-E541807 [TUS-62-M15]">
      <seq>atcttcggaagctaggaaatggaaatcgtacaataaagatgttttaggaattggctatggcagtgacaatcaaaatggtagcacagtgcaatcaaaggagcttgatctaaaggttatcacctgtgaagaacttgtttctgaggcattaaaactccctctattatctaatccaaatcataatgttgctgatcctctaaaagatgctggcagagtaagtgacagtccaagagcagccgttagggataagacagcagaatgctcatcctataaagctggttcacaggaaagtcgttcaccagaaatgttgaaggtttctgatgctgtcggtaataaaagtttggttgaacataactgcttgacaaaggaaagagttaatgttggaaaaactgagaagccatgttcatccggggagtatccgatattggcttcaaatgaatcaacttcccttgatgctttgcatgccagccaagacaaccgggatcatagtgtacaaggtatcgattccagtggcaggaaaagatatggatcaaaaggttcgtcaagtggaaccaaagaagacggctcacaatcttccaactacgttatgatgaaccatcaggagaacccgaattgtagaagctcaagtggtacttctcgttcactggataaaacttgcaaccaacacaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135181" stop="136449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135481" g_stop="136149" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E541807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135481" e_stop="136149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGG</genome_strand>
        <mrna_strand>ATCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299880" ref_strand="+" ref_description="SGN-E299880 [cLEW-1-O2]">
      <seq>tcttcggaagctaggaaatggaaatcgtacaataaagatgttttaggaattggctatggcagtgacaatcaaaatggtagcacagtgcaatcaaaggagcttgatctaaaggttatcacctgtgaagaacttgtttctgaggcattaaaactccctctattatctaatccaaatcataatgttgctgatcctctaaaagatgctggcagagtaagtgacagtccaagagcagccgttagggataagacagcagaatgctcatcctataaagctggttcacaggaaagtcgttcaccagaaatgttgaaggtttctgatgctgtcggtaataaaagtttggttgaacataactgcttgacaaaggaaagagttaatgttggaaaaactgagaagccatgttcatccggggagtatccgatattggcttcaaatgaatcaacttcccttgatgctttgcatgccagccaagacaaccgggatcatagtgtacaaagtatcgattccagtggcaggaaaagatatggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135182" stop="136309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135482" g_stop="136009" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E299880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135482" e_stop="136009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCA</genome_strand>
        <mrna_strand>TCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAAGTATCGATTCCAGTGGCAGGAAAAGATATGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314697" ref_strand="+" ref_description="SGN-E314697 [cTOA-20-C19]">
      <seq>gtatcgattccagtggcaggaaaagatatggatcaaaaggttcgtcaagtggaaccaaagaagacggctcacaatcttccaactacgttatgatgaaccatcaggagaacccgaattgtagaagctcaagtggtacttctcgttcactggataaaacttgcaaccaacacaccggcgttccaaatagctcagttgtagagaagaggagacataaaaacaaagagaagaaaatttctcatgataaccactctgatggaggtacgaaggatgcaaatacaaggaacacaagtgaagtggaatcagatgtatcttccaaaaaaattatacaagatgatgcactcgatgacgagaaacagaccttttgccctgttgttgaaaagtctagatggagttcaaagcagtaaatgccagagatgattcgtgacaaatgtaagaacagggactcagaggatgattcaaagaaagacttggtttcagcaaagacccagaagcttatatttccgatgtgtcaacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135675" stop="136880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135975" g_stop="136232" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136233" i_stop="136321" i_length="89">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136322" g_stop="136580" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="516" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E314697" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135975" e_stop="136232"/>
          <exon e_start="136322" e_stop="136580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGGCGTTCCAAATAGCTCAGTTGTAGAGAAGAGGAGACATAAAAACAAAGAGAAGAAAATTTCTCATGATAACCACTCTGATGGAGGTATTCATCTTTAGTAGTCACATTTTGAACTTGCTGCCATCGTGAAATTCTGGTCTTTATCTTTATTTTCTGTATGGGATGTTTGACAGGTACGAAGGATGCAAATACAAGGAACACAAGTGAAGTGGAATCAGATGTATCTTCCAAAAAAATTATACAAGATGATGCACTCGATGACGAGAACCAGACCTTTTGCCCTGTTGTTGAAAAGTCTAGATGGAGTTC-AAGCAGTAAAATGCCAGAGATGATTCGTGACAAATGTAAGAACAGGGACTCAGAGGATGATTCAAAGAAAGACTTGGTTTCAGCAAAGAACCCAGAAGCTTATATTTCCGATGTGTCAACGCA</genome_strand>
        <mrna_strand>GTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGGCGTTCCAAATAGCTCAGTTGTAGAGAAGAGGAGACATAAAAACAAAGAGAAGAAAATTTCTCATGATAACCACTCTGATGGAG.........................................................................................GTACGAAGGATGCAAATACAAGGAACACAAGTGAAGTGGAATCAGATGTATCTTCCAAAAAAATTATACAAGATGATGCACTCGATGACGAGAAACAGACCTTTTGCCCTGTTGTTGAAAAGTCTAGATGGAGTTCAAAGCAGT-AAATGCCAGAGATGATTCGTGACAAATGTAAGAACAGGGACTCAGAGGATGATTCAAAGAAAGACTTGGTTTCAGCAAAG-ACCCAGAAGCTTATATTTCCGATGTGTCAACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364795" ref_strand="+" ref_description="SGN-E364795 [cLPT-4-F8]">
      <seq>tgatgggttctccaataaatccagtatggttaagaatgataatgcctgcaatggcaagagttatgatctattatctgaagctgaattagaggagaaagatgtccatcgtgaatcaggtaaaaaagtcaaagcaaaggccacggtttctggttatgcaactcaacaggataccgatgtaagtgcagatccgttacgtcaagctagtcaatttgcttgcaagactggaaactcagaccaaggctctgataaggagagaaagaatgaccatcagtttcagaatactgggtctgtgtcaaataggaaaaggggttcctcgtcacggcgtaaagagaagaatcgggctccaaaatctgattctgaccaatgtaagaccaaagatactgatatcttaaatttatcttcagatcaaatgccaattaatgaagagaagacggcaccaggaaaaaataagtctcaggggaaatctgttgttggttcagatagattaaaaaagagttctaagaaagatccttctggaaaattattggaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136644" stop="137778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136944" g_stop="137478" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E364795" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136944" e_stop="137478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGTTCTCCAATAAATCCAGTATGGTTAAGAAGGATAATGCCTGCAATGGCAAGAGTTATGATCTATTATCTGAAGCTGAATTAGAGGAGAAAGATGTTCATCGTGAATCAGGTAAAAAAGTCAAAGCAAAGTCCATGGTTTCTGGTTATGCAACTCAACAGGATACCGATGTAAGTGCAGATCCCTTACGTCAAGCTAGTCACTTTGCTTGCAAGACTGGAAACTCAGACCAAGGCTCCGATAAGGAGAGAAAGAATGACCATCAGTTTCAGAATAGTGGGTCTGTGTCAAATAGGAAAAGAGGTTCCTCGTCACGGCGTAAAGAGAAGAATCGGGCTCCAAAATCTGATTCTGACCAATGTAAGACCAAAGATACTGATATCTTAAATTTATCTTCAGAGCAAATGCCATTTAATGAAGAGAAGACGGCACCAGGAAAAAATAAGTCTCAGGGGAAATCTGTTGTTGGTTCAGATAGATTAAAAAAGAGTTCTAAGAAGGATCCTTCTGGAAAATTATTGGAAAAAAAT</genome_strand>
        <mrna_strand>TGATGGGTTCTCCAATAAATCCAGTATGGTTAAGAATGATAATGCCTGCAATGGCAAGAGTTATGATCTATTATCTGAAGCTGAATTAGAGGAGAAAGATGTCCATCGTGAATCAGGTAAAAAAGTCAAAGCAAAGGCCACGGTTTCTGGTTATGCAACTCAACAGGATACCGATGTAAGTGCAGATCCGTTACGTCAAGCTAGTCAATTTGCTTGCAAGACTGGAAACTCAGACCAAGGCTCTGATAAGGAGAGAAAGAATGACCATCAGTTTCAGAATACTGGGTCTGTGTCAAATAGGAAAAGGGGTTCCTCGTCACGGCGTAAAGAGAAGAATCGGGCTCCAAAATCTGATTCTGACCAATGTAAGACCAAAGATACTGATATCTTAAATTTATCTTCAGATCAAATGCCAATTAATGAAGAGAAGACGGCACCAGGAAAAAATAAGTCTCAGGGGAAATCTGTTGTTGGTTCAGATAGATTAAAAAAGAGTTCTAAGAAAGATCCTTCTGGAAAATTATTGGAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546655" ref_strand="+" ref_description="SGN-E546655 [TUS-70-C3]">
      <seq>tttccaacaaaagtgagcagattaacgtctcttccaagtctcctttaacaagagatcagaatgagacagctgtatttaaagagccagttcctggatctgaaagggaaaatggcaatgcttttgaaagggaaaggtcaaatacttcaagacagggtaaaaaagctaaaagccaccacggaaatctacctaataatactgctaataaggttagggaccaagatgttcccagtcctgttcggaaggattcatcaagtcaagctgctacaaatgccataaaagaagccacaaaccttaaacacctggcagatcgtctcaagaattctggatcaagcgaaagtacgggtatctatttccaagcagcattaaagtttctccatggcgcctccttactagaattagacagctccaagcatggtgaacagaaccagtcaaggagcatctatagcagcactgcaaaactctgccagttttgtggtcatgaatatgagaaattgagagacatggcagctgccgcactagcctataaatgcatggaggttgcttacatgcgagtaatttattcttcacagtccgatgcaaacagatacagaaacgagttacaaacagctctacaaatttttcctccagacatggctgcatcggcaaaagttgttggttctcctcaagttgcgggaactcatgttatctcagcangaaatggttctagcttcacgcagctaattaacttggcacaggcagttaattttgctatggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137309" stop="141141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137609" g_stop="137925" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137926" i_stop="138042" i_length="117">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138043" g_stop="138191" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="466" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139507" g_stop="139667" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="627" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139668" i_stop="140344" i_length="677">
            <donor d_prob="0.608" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140345" g_stop="140445" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="728" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140446" i_stop="140812" i_length="367">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140813" g_stop="140841" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="757" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E546655" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137609" e_stop="137925"/>
          <exon e_start="138043" e_stop="138191"/>
          <exon e_start="139507" e_stop="139667"/>
          <exon e_start="140345" e_stop="140445"/>
          <exon e_start="140813" e_stop="140841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAGGTTAAAAGAATTTACACTTATGTCCAAAGAAAGGAGGGGATAAAATATGGTGGATATGCTTTATTATTTGTTTCATTTATTTATTTATGTTGGCATAACTTTGGCTATTTGTTTTAGAATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCAGTGAGTTCCCTTTTAATTTGAACATGGGTTATTCATTGAGATGACATGCAAAGAACGGTTGCAAGCATGAATGTATTGTGTTAGAAAAGATTGTAGAGTATTTATTATTCCTACATGCCTAAGTTCTTAGAATTTGAGACACGTCTGCAGCATACCCAATGTAGTCGTTCATGTAAATCTCCCATTAAAGACCCAGTCTGGCCAAGTATGAAGTGTCTCAGCAACTCTTAGCAAATGCCATGCTGTTGAATAGCAAATAATTCCCTTAACTCAGACCTTACCCCTTAATAGCATTCTTTTACCCCCTCCATTTCAATTTGTTTGTCCTACTTCCCTTTTTAGTCCGTTTAAAATAAGAATGTCTCTTCTTTTTCGGCAACTCTTTGATTTCAACTTTCCTCATGGCATGTTTAAGAGCACATGATTAAAGAACATTTTGGTACATTCTGCATATCTTTAGTTTAAGACAACAAGCTTCAAAATTCTTCTTCATTTCTTAAACGCGGTGCCAAGTTAAAACTAGAGACGAACTAATTGAAACGGAGGGCGTATTTTTTTGAGTCTTTATTTGACTTATGAGAATGATGTTTCAAAATTACAGAATTTTCCTTGACACTATGTTTTCCCATTCTTTACATTTATGAAGGATCTAAGAATAATTGAAGATTTGGATTTTCTTGAAGCGACACTAGCTGTAAAATTTGGTTGATATGTTGGTAATTGTTCTGTATCAGCTACTTTATAAGTGTTGAACTTGTTAGCATATTCGTTTCTTGTTGACAACAACATTAGCAGCCAGATATAACAGTACAATTTTAGTGCGATTAAAAAATTTAATCCAAAGTTGTGTTTCAGTTTATATTCAGTTATACCTCATATAATTTTTGGACGCAATTTCCTTCTCTGGTGTCATGTATTATGAAAAACTTTGTGACCTAATCTACAACAATATTCCTGGTGTAATCCCACAAAGTGGGGTACACAAACCTTACCCCACCTTGGAGATAGAGAGGCTATTCCCACAGATACTGGTCTCTTTGTGACCTAATCTATTTTTCTGAATATGATAGTGCTTTTCAACTTCCACTATTTGAAGAGATGTCTATGCAGCCAAGGTTTATGGTGCTTTTTTACTCAATTGGAAGAGCAAATTTCATTGGGTAGTACTTTTCAAACATGTGGAATTTATGCTACTTATGGATATAGTTTGATGTATTTTCGATGTCAGTTGTTCCAATTTAATGAAAAACTTGACCTACCATCTGAAATGTCAACAAGGATGTATGTTGATTGTTGGTCCTTCTTATGTGCATAGGTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTTGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGACGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAGGTAATCTGGATTGAGATGTCTGGGAAATCTACATTTCATATCTTGGTGCTTCTTTAGGCCACTACTTTAACTTTTGATATTACTAATCTGCTCTTTGATGGTTACTCAATGAACATGTCAAATGATTTCTTTTTTTACTCCATAATCATCACATGTACGTATTGGTTAATGCGTATTTACACTTCTGTCCTTCTAGTCGGGGAAGTACGGCATATGTCAAAATTAGTGATATCCACTGTTGATGAACAGGATTGCTCAGGGAAGAAAGCATTAGTATAAAATATGACTACTGGAAATAGTTAAACTAGTTAGAATGTGTTACAACCATATTTATCTAATGAGGATGAGCTGCATTGAACTTTTCTTCTTAATGGTTATTACTCTTACCGAAGGGACCGTTTGCGTAATTTGTAAAGTTGTTTCCATGTGACTAGGAGGTCGCGGGTTCGAGCTGTGTAAAAGCCTCTTGCAGAAATGCAGGGTAAGGCCGCATACAATAGACTCTTGTAGTCCGGCCCTTCCCTGGATCCCACACATAGCGGGGGCCTTGTGCACCGGGCTGCCCCGTTTTTATTTTTTTCGTTATTACTCTTACCATACTCATTATTATATAATAGGTGAGTCTCCTTTCTCTTCTATCTCTGATGTTGACAATTTGAACAATCCAACAATAGTAGACATGGCTGCATCGGCAAAAGTTGTTGGTTCTCCTCAAGTAGCGGGAACTCATGTTATCTCAGCAGGAAATGGTTCCAGCTTCACGCAGCTAATCAACTTGGTAAGTAGACATATCTTATCATTTTAATGATGAACCAACACCTCAATTAAAGAAATGTTTTGTGATAACTAACACTGTGATTAGATATAATAATTGCCTAAAGAACGGTAAGACAAAATTAGCTGTTTGAACCGCATTCATTTGGCTTCATCATCTTTCTTCCAAGGGATTGAACTTTGTTTTCCTGTCCCCTTAATTGTTATCTACCATTTTATTTGCGCAAAGGACATGAAAAAATGGCTTACTTGTCAAAACCTTTTCCCATAAGTATCCGTTAAGAAGTCAGGTTCTAGGTTCTGATTTTTTGATAGTTTGACTATGCAATGTTGTTTCAATTTTCTAAACATATAGTTTTGTTATTTTACAGGCACAGGCAGTTAATTTTGCTATGGAGGC</genome_strand>
        <mrna_strand>TTTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTTAGGGACCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAG.....................................................................................................................AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCAGCATTAAAGTTTCTCCATGGCGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTAGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGATGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCTGCATCGGCAAAAGTTGTTGGTTCTCCTCAAGTTGCGGGAACTCATGTTATCTCAGCANGAAATGGTTCTAGCTTCACGCAGCTAATTAACTTG...............................................................................................................................................................................................................................................................................................................................................................................GCACAGGCAGTTAATTTTGCTATGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358047" ref_strand="+" ref_description="SGN-E358047 [cLHT-32-H19]">
      <seq>ttccaacaaaagtgagcagattaacgtctcttccaagtctgctttaacaagagatcagaatgagacagctgtatttaaagagccagttcctggatctgaaagggaaaatggcaatgcttttgaaagggaaaggtcaaatacttcaagacagggtaaaaaagctaaaagccaccacggaaatctacctaataatactgctaataaggttagggaccaagatgttcccagtcctgttcggaaggattcatcaagtcaagctgctacaaatgccataaaagaagccacaaaccttaaacacctggcagatcgtctcaagaattctggatcaagcgaaagtacgggtatctatttccaagcagcattaaagtttctccatggcgcctccttactagaattagacagctccaagcatggtgaacagaaccagtcaaggagcatctatagcagcactgcaaaactctgccagttttgtggtcatgaatatgagaaattgagagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137310" stop="139841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137610" g_stop="137925" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137926" i_stop="138042" i_length="117">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138043" g_stop="138191" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="465" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139507" g_stop="139541" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="500" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E358047" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137610" e_stop="137925"/>
          <exon e_start="138043" e_stop="138191"/>
          <exon e_start="139507" e_stop="139541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAGGTTAAAAGAATTTACACTTATGTCCAAAGAAAGGAGGGGATAAAATATGGTGGATATGCTTTATTATTTGTTTCATTTATTTATTTATGTTGGCATAACTTTGGCTATTTGTTTTAGAATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCAGTGAGTTCCCTTTTAATTTGAACATGGGTTATTCATTGAGATGACATGCAAAGAACGGTTGCAAGCATGAATGTATTGTGTTAGAAAAGATTGTAGAGTATTTATTATTCCTACATGCCTAAGTTCTTAGAATTTGAGACACGTCTGCAGCATACCCAATGTAGTCGTTCATGTAAATCTCCCATTAAAGACCCAGTCTGGCCAAGTATGAAGTGTCTCAGCAACTCTTAGCAAATGCCATGCTGTTGAATAGCAAATAATTCCCTTAACTCAGACCTTACCCCTTAATAGCATTCTTTTACCCCCTCCATTTCAATTTGTTTGTCCTACTTCCCTTTTTAGTCCGTTTAAAATAAGAATGTCTCTTCTTTTTCGGCAACTCTTTGATTTCAACTTTCCTCATGGCATGTTTAAGAGCACATGATTAAAGAACATTTTGGTACATTCTGCATATCTTTAGTTTAAGACAACAAGCTTCAAAATTCTTCTTCATTTCTTAAACGCGGTGCCAAGTTAAAACTAGAGACGAACTAATTGAAACGGAGGGCGTATTTTTTTGAGTCTTTATTTGACTTATGAGAATGATGTTTCAAAATTACAGAATTTTCCTTGACACTATGTTTTCCCATTCTTTACATTTATGAAGGATCTAAGAATAATTGAAGATTTGGATTTTCTTGAAGCGACACTAGCTGTAAAATTTGGTTGATATGTTGGTAATTGTTCTGTATCAGCTACTTTATAAGTGTTGAACTTGTTAGCATATTCGTTTCTTGTTGACAACAACATTAGCAGCCAGATATAACAGTACAATTTTAGTGCGATTAAAAAATTTAATCCAAAGTTGTGTTTCAGTTTATATTCAGTTATACCTCATATAATTTTTGGACGCAATTTCCTTCTCTGGTGTCATGTATTATGAAAAACTTTGTGACCTAATCTACAACAATATTCCTGGTGTAATCCCACAAAGTGGGGTACACAAACCTTACCCCACCTTGGAGATAGAGAGGCTATTCCCACAGATACTGGTCTCTTTGTGACCTAATCTATTTTTCTGAATATGATAGTGCTTTTCAACTTCCACTATTTGAAGAGATGTCTATGCAGCCAAGGTTTATGGTGCTTTTTTACTCAATTGGAAGAGCAAATTTCATTGGGTAGTACTTTTCAAACATGTGGAATTTATGCTACTTATGGATATAGTTTGATGTATTTTCGATGTCAGTTGTTCCAATTTAATGAAAAACTTGACCTACCATCTGAAATGTCAACAAGGATGTATGTTGATTGTTGGTCCTTCTTATGTGCATAGGTTTTGTGGTCATGAATATGAGAAATTGAGAGACA</genome_strand>
        <mrna_strand>TTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTGCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTTAGGGACCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAG.....................................................................................................................AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCAGCATTAAAGTTTCTCCATGGCGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGGTCATGAATATGAGAAATTGAGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299776" ref_strand="+" ref_description="SGN-E299776 [cLEW-1-A23]">
      <seq>tcaaatacttcaagacagggtaaaaaagctaaaagccaccacggaaatctacctaataatactgctaataaggtcaggtatcaagatgttcccagtcctgttcggaaggattcatcaagtcaagctgctacaaatgccataaaagaagccacaaaccttaaacacctggcagatcgtctcaagaattctggatcaagcgaaagtacgggtatctatttccaagcggcattaaagtttctccatggtgcctccttactagaattagacagctccaagcatggtgaacagaaccagtcaaggagcatctatagcagcactgcaaaactctgccagttttgtggtcatgaatatgagaaattgagagacatggcagctgccgcacttgcctataaatgcatggaggttgcttacatgcgagtaatttattcttcacagtccgacgcaaacagatacagaaacgagttacaaacagctctacaaatttttcctccaggtgagtctcctttctcttctatctctgatgttgacaatttgaacaatccaacaatagtagacatggctgcatcggcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137443" stop="140665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137743" g_stop="137925" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137926" i_stop="138042" i_length="117">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138043" g_stop="138191" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="332" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139507" g_stop="139667" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="493" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139668" i_stop="140284" i_length="617">
            <donor d_prob="0.608" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140285" g_stop="140365" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="574" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E299776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137743" e_stop="137925"/>
          <exon e_start="138043" e_stop="138191"/>
          <exon e_start="139507" e_stop="139667"/>
          <exon e_start="140285" e_stop="140365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAGGTTAAAAGAATTTACACTTATGTCCAAAGAAAGGAGGGGATAAAATATGGTGGATATGCTTTATTATTTGTTTCATTTATTTATTTATGTTGGCATAACTTTGGCTATTTGTTTTAGAATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCAGTGAGTTCCCTTTTAATTTGAACATGGGTTATTCATTGAGATGACATGCAAAGAACGGTTGCAAGCATGAATGTATTGTGTTAGAAAAGATTGTAGAGTATTTATTATTCCTACATGCCTAAGTTCTTAGAATTTGAGACACGTCTGCAGCATACCCAATGTAGTCGTTCATGTAAATCTCCCATTAAAGACCCAGTCTGGCCAAGTATGAAGTGTCTCAGCAACTCTTAGCAAATGCCATGCTGTTGAATAGCAAATAATTCCCTTAACTCAGACCTTACCCCTTAATAGCATTCTTTTACCCCCTCCATTTCAATTTGTTTGTCCTACTTCCCTTTTTAGTCCGTTTAAAATAAGAATGTCTCTTCTTTTTCGGCAACTCTTTGATTTCAACTTTCCTCATGGCATGTTTAAGAGCACATGATTAAAGAACATTTTGGTACATTCTGCATATCTTTAGTTTAAGACAACAAGCTTCAAAATTCTTCTTCATTTCTTAAACGCGGTGCCAAGTTAAAACTAGAGACGAACTAATTGAAACGGAGGGCGTATTTTTTTGAGTCTTTATTTGACTTATGAGAATGATGTTTCAAAATTACAGAATTTTCCTTGACACTATGTTTTCCCATTCTTTACATTTATGAAGGATCTAAGAATAATTGAAGATTTGGATTTTCTTGAAGCGACACTAGCTGTAAAATTTGGTTGATATGTTGGTAATTGTTCTGTATCAGCTACTTTATAAGTGTTGAACTTGTTAGCATATTCGTTTCTTGTTGACAACAACATTAGCAGCCAGATATAACAGTACAATTTTAGTGCGATTAAAAAATTTAATCCAAAGTTGTGTTTCAGTTTATATTCAGTTATACCTCATATAATTTTTGGACGCAATTTCCTTCTCTGGTGTCATGTATTATGAAAAACTTTGTGACCTAATCTACAACAATATTCCTGGTGTAATCCCACAAAGTGGGGTACACAAACCTTACCCCACCTTGGAGATAGAGAGGCTATTCCCACAGATACTGGTCTCTTTGTGACCTAATCTATTTTTCTGAATATGATAGTGCTTTTCAACTTCCACTATTTGAAGAGATGTCTATGCAGCCAAGGTTTATGGTGCTTTTTTACTCAATTGGAAGAGCAAATTTCATTGGGTAGTACTTTTCAAACATGTGGAATTTATGCTACTTATGGATATAGTTTGATGTATTTTCGATGTCAGTTGTTCCAATTTAATGAAAAACTTGACCTACCATCTGAAATGTCAACAAGGATGTATGTTGATTGTTGGTCCTTCTTATGTGCATAGGTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTTGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGACGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAGGTAATCTGGATTGAGATGTCTGGGAAATCTACATTTCATATCTTGGTGCTTCTTTAGGCCACTACTTTAACTTTTGATATTACTAATCTGCTCTTTGATGGTTACTCAATGAACATGTCAAATGATTTCTTTTTTTACTCCATAATCATCACATGTACGTATTGGTTAATGCGTATTTACACTTCTGTCCTTCTAGTCGGGGAAGTACGGCATATGTCAAAATTAGTGATATCCACTGTTGATGAACAGGATTGCTCAGGGAAGAAAGCATTAGTATAAAATATGACTACTGGAAATAGTTAAACTAGTTAGAATGTGTTACAACCATATTTATCTAATGAGGATGAGCTGCATTGAACTTTTCTTCTTAATGGTTATTACTCTTACCGAAGGGACCGTTTGCGTAATTTGTAAAGTTGTTTCCATGTGACTAGGAGGTCGCGGGTTCGAGCTGTGTAAAAGCCTCTTGCAGAAATGCAGGGTAAGGCCGCATACAATAGACTCTTGTAGTCCGGCCCTTCCCTGGATCCCACACATAGCGGGGGCCTTGTGCACCGGGCTGCCCCGTTTTTATTTTTTTCGTTATTACTCTTACCATACTCATTATTATATAATAGGTGAGTCTCCTTTCTCTTCTATCTCTGATGTTGACAATTTGAACAATCCAACAATAGTAGACATGGCTGCATCGGCAAAAG</genome_strand>
        <mrna_strand>TCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAG.....................................................................................................................AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTTGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGACGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCTCCTTTCTCTTCTATCTCTGATGTTGACAATTTGAACAATCCAACAATAGTAGACATGGCTGCATCGGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375286" ref_strand="+" ref_description="SGN-E375286 [TUS-34-P9]">
      <seq>gctatggaggcctccaggaaatcacgtgttgcttttgcagctgtttatccagggccgggagattcacaatgtaaagagggtgcattatctgttaagagggcccttgatttcaacttccaggatgtggatggattattgcgtcttgtgcgggtcgccatggaagctatcagccattagagtgcaagctgttgttgaaattgtccacttcttggaacatagttttgtacctgctctccattactgtcagttgagcaagtaaaagcgaggatctcttggttggagttgtgggtggattttgctctatcatctcccaaagttttatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttagcagaaggggagtcttggagtaacggtaaagttgtctctatgtcacatgaactgggttcaagccaaggaatcaatcactgataagcatcagggaaggctgccttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttcatacaccgggctgtcagaaattcacatcattcagttgcccgttacttgtcctactgacttggtacataagaaaccgagataacttgttggttttgacacagagtgaaagatgtagggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140531" stop="141869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140831" g_stop="141430" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141431" i_stop="141509" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141510" g_stop="141569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="660" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E375286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140831" e_stop="141430"/>
          <exon e_start="141510" e_stop="141569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTGGTAAGATATTGCATCCGTATCTGTGTTAAATAAATTTCCTCAAGGGTCCTACTCTTAGACCAGATTACCTTTTTCTCAGGTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTT</genome_strand>
        <mrna_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG...............................................................................GTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAGTGAAAGATGTAGGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252534" ref_strand="+" ref_description="SGN-E252534 [cLEG-20-D4]">
      <seq>gctatggaggcctccaggaaatcacgtgttgcttttgcagctgtttatccagggccgggagattcacaatgtaaagagggtgcattatctgttaagagggcccttgatttcaacttccaggatgtggatggattattgcgtcttgtgcgggtcgccatggaagctatcaccataagtgcaagctgttgttgaaattgtccacttcttggaacatagttttgtacctgctctccattactgtcagttgagcaagtaaaagcgaggatctcttggttggagttgtgggtggattttgctctatcatctcccaaagttttatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttagcagaaggggagtcttggagtaacggtaaagttgtctctatgtcacatgaactgggttcaagccaaggaatcaatcactgataagcatcacggaaggctgccttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttcatacaccgggctgtcagaaattcacatcattcagttgcccgttacttgtcctactgacttggtacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140531" stop="141736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140831" g_stop="141430" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141431" i_stop="141509" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141510" g_stop="141517" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="605" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E252534" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140831" e_stop="141430"/>
          <exon e_start="141510" e_stop="141517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTGGTAAGATATTGCATCCGTATCTGTGTTAAATAAATTTCCTCAAGGGTCCTACTCTTAGACCAGATTACCTTTTTCTCAGGTACATAA</genome_strand>
        <mrna_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCA-CCA-TA-AGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCACGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG...............................................................................GTACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252540" ref_strand="+" ref_description="SGN-E252540 [cLEG-20-H2]">
      <seq>gctatggaggcctccaggaaatcacgtgttgcttttgcagctgtttatccagggccgggagattcacaatgtaaagagggtgcattatctgttaagagggcccttgatttcaacttccaggatgtggatggattattgcgtcttgtgcgggtcgcatgngaagctatcacctaagtgcaagctgttgttgaaattgtccacttcttggaacatagttttgtacctgctctccattactgtcagttgagcaagtaaaagcgaggatctcttggttggagttgtgggtggattttgctctatcatctcccaaagttttatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttagcagaaggggagtcttgggtaacggtaaagttgtctctatgtcacatgaactgggttcaagccaaggaatcaatcactgataagcatcanggaaggctgccttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttcatacaccgggctgtcagaaattcacatcattcagttgcccgttacttgtcctactgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140531" stop="141730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140831" g_stop="141430" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E252540" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140831" e_stop="141430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATG-GAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG</genome_strand>
        <mrna_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCG-CATGNGAAGCTATCA-CC--TA-AGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGG-GTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCANGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252536" ref_strand="+" ref_description="SGN-E252536 [cLEG-20-F2]">
      <seq>gctatggaggcctgcaggaaatcacgtgttgcttttgcagctgtttatccagggccgggagattcacaatgtaaagagggtgcattatctgttaagagggcccttgatttcaacttccatgatgtggatggattattgcgtcttgtgcgggtcgccatggaagctatacctgagtgcaagctgttgttgaaattgtccacttcttggaacatagtttagtacctgctctccattactgtcagttgagcaagtaaaagcgaggatctcttggttggagttgagggtggattttgctctatcatctcccaaagtattatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttatcagaaggggagtcttggataacggtaaagttgtctctatgtcacatgaactgggttcaagccaatgaatcaatcactgataagcatcacggaaggctgacttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttgatacaccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140531" stop="141679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140831" g_stop="141379" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E252536" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140831" e_stop="141379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGG</genome_strand>
        <mrna_strand>GCTATGGAGGCCTGCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCATGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTAT-A-CC--T-GAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTAGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGAGGGTGGATTTTGCTCTATCATCTCCCAAAGTATTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTATCAGAAGGGGAGTCTTGGA-TAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAATGAATCAATCACTGATAAGCATCACGGAAGGCTGACTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTGATACACCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379108" ref_strand="+" ref_description="SGN-E379108 [TUS-1-D22](-)">
      <seq>cagttgagcaagtaaaagcgaggatctcttggtcggagttgtgggtggattttgctctatcatctcccaaagttttatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttagcagaaggggagtcttggagtaacggtaaagttgtctctatgtcacatgaactgggttcaagccaaggaatcaatcactgataagcatcagggaaggctgccttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttcatacaccgggctgtcagaaattcacatcattcagttgcccgttacttgtcctactgacttggtacataagaaaccgagataacttgttggttttgacacagaaggaaagatgtagggagttttacttcaaggaaagtgcagaagtataatgtaaccaatatatatgcttcatatgaattgttgattagaggaagaggagttactataccttctccctctctactttttgcagatggcttacttgggtacttgcagtttcacctcttcatttgaaaatgggaaatggagaaacatgtagagttgatacgtgttggaactgaataattgtcatatcaatttacatgcaacattcattggataatatatgaagatcactttctttgtaaggagtgctagcagaaattgattgctatgaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140775" stop="142742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141075" g_stop="141430" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141431" i_stop="141509" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141510" g_stop="141665" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="512" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141666" i_stop="141747" i_length="82">
            <donor d_prob="0.484" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141748" g_stop="141802" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="567" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141803" i_stop="142526" i_length="724">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142527" g_stop="142676" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="716" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E379108" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141075" e_stop="141430"/>
          <exon e_start="141510" e_stop="141665"/>
          <exon e_start="141748" e_stop="141802"/>
          <exon e_start="142527" e_stop="142676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTGGTAAGATATTGCATCCGTATCTGTGTTAAATAAATTTCCTCAAGGGTCCTACTCTTAGACCAGATTACCTTTTTCTCAGGTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTTTTACTTCAAGGAAAGTGCAGAAGTATAATGTAACCAATATATATGCTTCATATGAATTGTTGATTAGAGGAAGAGGAGTTACTATACCTTCTCCCTGTAAGTCGATTGCCCACAGCTGAATTCTACTTGCAAAACAAGAGAGATATTTGCCTAATATGTCTTGGTTTGTTTGTTGCAGCTCTACTTTTTGCAGATGGCTTACTTGGGTACTTGCAGTTTCACCTCTTCATTTGGTTAGTTTTCTTCTTTCATAGGAGTTTATCAAATCATATATCATCTTATATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAAAATAAAAAACACTATATAAAAGTAACGAATGATTTCCATTTTGTTCAAGTTTTGTTTCTTTAGTTGTGCATCTGGCCTTCTTTCTAAGTTTCTTTCTTTTCACTTAAATTTTTCCTTTTGCATGAACTAAAGAAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGCAGAAATTGATTTGCTATGAAAAGGA</genome_strand>
        <mrna_strand>CAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTCGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG...............................................................................GTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTTTTACTTCAAGGAAAGTGCAGAAGTATAATGTAACCAATATATATGCTTCATATGAATTGTTGATTAGAGGAAGAGGAGTTACTATACCTTCTCCCT..................................................................................CTCTACTTTTTGCAGATGGCTTACTTGGGTACTTGCAGTTTCACCTCTTCATTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGCAGAAATTGA-TTGCTATGAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374554" ref_strand="+" ref_description="SGN-E374554 [TUS-15-D9](-)">
      <seq>cccaaagtttatcttctcaatgcttctgtacagtaatacctgaattttactgtttgtaagatgttttagcagaaggggagtcttggagtaacggtaaagttgtctctatgtcacatgaactgggttcaagccaaggaatcaatcactgataagcatcagggaaggctgccttcaacacaccccttggagagtggtccatctccagacctagtctgaacgtggatgcttcatacaccgggctgtcagaaattcacatcattcagttgcccgttacttgtcctactgacttggtacataagaaaccgagataacttgttggttttgacacagaaggaaagatgtagggagttttacttcaaggaaagtgcagaagtataatgtaaccaatatatatgcttcatatgaattgttgattagaggaagaggagttactataccttctccctctctactttttgcagatggcttacttgggtacttgcagtttcacctcttcatttgaaaatgggaaatggagaaacatgtagagttgatacgtgttggaactgaataattgtcatatcaatttacatgcaacattcattggataatatatgaagatcactttctttgtaaggagtgctagcagaaattgatttgctatgaaaaggaggaagttgatttatttggaagattgattttagaattttcattaattgatttattcttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140840" stop="142742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141140" g_stop="141430" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141431" i_stop="141509" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141510" g_stop="141665" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="446" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141666" i_stop="141747" i_length="82">
            <donor d_prob="0.484" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141748" g_stop="141802" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="501" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141803" i_stop="142526" i_length="724">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142527" g_stop="142742" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="717" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E374554" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141140" e_stop="141430"/>
          <exon e_start="141510" e_stop="141665"/>
          <exon e_start="141748" e_stop="141802"/>
          <exon e_start="142527" e_stop="142742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTGGTAAGATATTGCATCCGTATCTGTGTTAAATAAATTTCCTCAAGGGTCCTACTCTTAGACCAGATTACCTTTTTCTCAGGTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTTTTACTTCAAGGAAAGTGCAGAAGTATAATGTAACCAATATATATGCTTCATATGAATTGTTGATTAGAGGAAGAGGAGTTACTATACCTTCTCCCTGTAAGTCGATTGCCCACAGCTGAATTCTACTTGCAAAACAAGAGAGATATTTGCCTAATATGTCTTGGTTTGTTTGTTGCAGCTCTACTTTTTGCAGATGGCTTACTTGGGTACTTGCAGTTTCACCTCTTCATTTGGTTAGTTTTCTTCTTTCATAGGAGTTTATCAAATCATATATCATCTTATATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAAAATAAAAAACACTATATAAAAGTAACGAATGATTTCCATTTTGTTCAAGTTTTGTTTCTTTAGTTGTGCATCTGGCCTTCTTTCTAAGTTTCTTTCTTTTCACTTAAATTTTTCCTTTTGCATGAACTAAAGAAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGCAGAAATTGATTTGCTATGAAAAGGAGGAAGTTGATTTATTTGGAAGATTGATTTTAGAATTTTCATTAATTGATTTATTCTTATAAAATGT</genome_strand>
        <mrna_strand>CCCAAAG-TTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG...............................................................................GTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTTTTACTTCAAGGAAAGTGCAGAAGTATAATGTAACCAATATATATGCTTCATATGAATTGTTGATTAGAGGAAGAGGAGTTACTATACCTTCTCCCT..................................................................................CTCTACTTTTTGCAGATGGCTTACTTGGGTACTTGCAGTTTCACCTCTTCATTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGCAGAAATTGATTTGCTATGAAAAGGAGGAAGTTGATTTATTTGGAAGATTGATTTTAGAATTTTCATTAATTGATTTATTCTTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279426" ref_strand="+" ref_description="SGN-E279426 [cLER-11-B15]">
      <seq>atatcatcttatatataataataataatcatatatcacatcatatcatatattattataagtgggaagaactcaagtcaaaagttgtcaaatattagaattctcaataagttttcttcaatatatatttgtattcatagccgaatttttatgctacctataattacaatatttaatatctgttaacctctcacaattgaataataatcataataataatagtaataataataataataatattttgcgcaccttaagtaaaagttaaataaaattcaattaattaatttttcaattacataaattgaacgggatttggaagtggaaatgtggtacttcaatgcccagagtcatacatgaattaattgctttaaattaacacatcgtgtattactttacctaactcttacaattcctataatttgtccttttcattttcttaacttgacttatcgaattctaactcttctaaattagtaactaatttttgttaatataacaatcagtagaatttgaatagttcattaattattatgtcaaaacgaatttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="141540" stop="142695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141840" g_stop="142394" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E279426" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141840" e_stop="142394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATCTTATATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAA</genome_strand>
        <mrna_strand>ATATCATCTTATATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537811" ref_strand="+" ref_description="SGN-E537811 [TUS-56-J17]">
      <seq>gatataataataataatcatatatcacatcatatcatatattattataagtgggaagaactcaagtcaaaagttgtcaaatattagaattctcaataagttttcttcaatatatatttgtattcatagccgaatttttatgctacctataattacaatatttaatatctgttaacctctcacaattgaataataatcataataataatagtaataataataataataatattttgcgcaccttaagtaaaagttaaataaaattcaattaattaatttttcaattacataaattgaacgggatttggaagtggaaatgtggtacttcaatgcccagagtcatacatgaattaattgctttaaattaacacatcgtgtattactttacctaactcttacaattcctataatttgtccttttcattttcttaacttgacttatcgaattctaactcttctaaattagtaactaatttttgttaatataacaatcagtagaatttgaatagttcattaattattatgtcaaaacgaatttcaaagaaaataaaaaacactatataaaagtaacgaatgatttccattttgttcaagttttgtttctttagttgtgcatctggccttctttctaagtttctttcttttcacttaaatttttccttttgcatgaactaaagaaaatgggaaatggagaaacatgtagagttgatacgtgttggaactgaaatattgtcatatcaatttacatgcaacattcattggataatatatgaagatcactttcttttgtaggagtgctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="141552" stop="142742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141851" g_stop="142651" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E537811" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141851" e_stop="142651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAAAATAAAAAACACTATATAAAAGTAACGAATGATTTCCATTTTGTTCAAGTTTTGTTTCTTTAGTTGTGCATCTGGCCTTCTTTCTAAGTTTCTTTCTTTTCACTTAAATTTTTCCTTTTGCATGAACTAAAGAAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGC</genome_strand>
        <mrna_strand>GATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAAAATAAAAAACACTATATAAAAGTAACGAATGATTTCCATTTTGTTCAAGTTTTGTTTCTTTAGTTGTGCATCTGGCCTTCTTTCTAAGTTTCTTTCTTTTCACTTAAATTTTTCCTTTTGCATGAACTAAAGAAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAAATATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTTGTAGGAGTGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267383" ref_strand="+" ref_description="SGN-E267383 [cLEI-8-G5]">
      <seq>atataataataataatcatatatcacatcatatcatatattattataagtgggaagaactcaagtcaaaagttgtcaaatattagaattctcaataagttttcttcaatatatatttgtattcatagccgaatttttatgctacctataattacaatatttaatatctgttaacctctcacaattgaataataatcataataataatagtaataataataataataatattttgcgcaccttaagtaaaagttaaataaaattcaattaattaatttttcaattacataaattgaacgggatttggaagtggaaatgtggtacttcaatgcccagagtcatacatgaattaattgctttaaattaacacatcgtgtattactttacctaactcttacaattcctataatttgtccttttcattttcttaacttgacttatcgaattctaactcttctaaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0019E05-HL23i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0019E05.1" temp_strand="+" temp_description="C06HBa0019E05.1  AC211024.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0019E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="141552" stop="142615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141852" g_stop="142315" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0019E05.1" gen_strand="+" ref_id="SGN-E267383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0019E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141852" e_stop="142315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAG</genome_strand>
        <mrna_strand>ATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>93</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2857" PGL_stop="1550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2857" e_stop="2819"/>
            <exon e_start="2737" e_stop="2615"/>
            <exon e_start="2306" e_stop="2222"/>
            <exon e_start="2120" e_stop="1971"/>
            <exon e_start="1685" e_stop="1550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.949"/>
          <exon-intron don_prob="0.996" acc_prob="0.976" e_score="0.959"/>
          <exon-intron don_prob="0.881" acc_prob="0.981" e_score="0.976"/>
          <exon-intron don_prob="0.563" acc_prob="0.997" e_score="0.980"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="2857" e_stop="2819" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2818" i_stop="2738" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="2737" e_stop="2615" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.976">
            <gDNA_intron_boundary i_start="2614" i_stop="2307" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="2306" e_stop="2222" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.981">
            <gDNA_intron_boundary i_start="2221" i_stop="2121" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="2120" e_stop="1971" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.563" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1970" i_stop="1686" i_length="285"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="1685" e_stop="1550" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2857" stop="2819"/>
              <exon start="2737" stop="2615"/>
              <exon start="2306" stop="2222"/>
              <exon start="2120" stop="1971"/>
              <exon start="1685" stop="1550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCCTTTTCGCCTCCATTTCTTTCAATCAAGAAATCAA : CAGCTGTGTAATACTTGAACCATTTGATAACTATGTCGGATGATGAGAGAGAAGAGAAGGAGTTGGATCTGACAAGTCCTGAGGTTGTTACTAAGTATAAGGGTGCTGCTGAAATCGTCAACA : AGGCTCTGCAGTTGGTGGTGTCTGAATGCAAGGCAAAAGCAAAGATAGTTGATCTTTGTGAAAAAGGAGATGCCTTTATTAAAGA : GCAAACAGGGAATATGTACAAGAATGTGAAGAAGAAAATCGAGAGGGGTGTGGCATTCCCAACCTGCATTTCAGTAAACAATACCGTCTGCCATTTTTCTCCACTGTCTAGTGATGAGACAGTATTGGAGGAAGGTGATATAGTGAAAAT : TGATATGGGGTGTCATATAGATGGCTTTATTGCTGTTGTTGCTCATACACATGTGGTCCAGGGAGGACCTGTTACTGGTAGGGCTGCTGATGTTCTTGCGGCTGCTAATACAGCTGCTGAAGTTGCTCTGAGGCTT</gDNA_template>
            <first_frame> T  P  F  R  L  H  F  F  Q  S  R  N  Q  :  Q  L  C  N  T  *  T  I  *  *  L  C  R  M  M  R  E  K  R  R  S  W  I  *  Q  V  L  R  L  L  L  S  I  R  V  L  L  K  S  S  T  :  R  L  C  S  W  W  C  L  N  A  R  Q  K  Q  R  *  L  I  F  V  K  K  E  M  P  L  L  K   : S  K  Q  G  I  C  T  R  M  *  R  R  K  S  R  G  V  W  H  S  Q  P  A  F  Q  *  T  I  P  S  A  I  F  L  H  C  L  V  M  R  Q  Y  W  R  K  V  I  *  *  K   : L  I  W  G  V  I  *  M  A  L  L  L  L  L  L  I  H  M  W  S  R  E  D  L  L  L  V  G  L  L  M  F  L  R  L  L  I  Q  L  L  K  L  L  *  G   </first_frame>
            <second_frame>  P  L  F  A  S  I  S  F  N  Q  E  I  N :   S  C  V  I  L  E  P  F  D  N  Y  V  G  *  *  E  R  R  E  G  V  G  S  D  K  S  *  G  C  Y  *  V  *  G  C  C  *  N  R  Q  Q :   G  S  A  V  G  G  V  *  M  Q  G  K  S  K  D  S  *  S  L  *  K  R  R  C  L  Y  *  R  :  A  N  R  E  Y  V  Q  E  C  E  E  E  N  R  E  G  C  G  I  P  N  L  H  F  S  K  Q  Y  R  L  P  F  F  S  T  V  *  *  *  D  S  I  G  G  R  *  Y  S  E  N  :  *  Y  G  V  S  Y  R  W  L  Y  C  C  C  C  S  Y  T  C  G  P  G  R  T  C  Y  W  *  G  C  *  C  S  C  G  C  *  Y  S  C  *  S  C  S  E  A  </second_frame>
            <third_frame>   P  F  S  P  P  F  L  S  I  K  K  S   : T  A  V  *  Y  L  N  H  L  I  T  M  S  D  D  E  R  E  E  K  E  L  D  L  T  S  P  E  V  V  T  K  Y  K  G  A  A  E  I  V  N   : K  A  L  Q  L  V  V  S  E  C  K  A  K  A  K  I  V  D  L  C  E  K  G  D  A  F  I  K  E :   Q  T  G  N  M  Y  K  N  V  K  K  K  I  E  R  G  V  A  F  P  T  C  I  S  V  N  N  T  V  C  H  F  S  P  L  S  S  D  E  T  V  L  E  E  G  D  I  V  K  I :   D  M  G  C  H  I  D  G  F  I  A  V  V  A  H  T  H  V  V  Q  G  G  P  V  T  G  R  A  A  D  V  L  A  A  A  N  T  A  A  E  V  A  L  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2726" stop="2615"/>
                    <exon start="2306" stop="2222"/>
                    <exon start="2120" stop="1971"/>
                    <exon start="1685" stop="1550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLNHLITMSDDEREEKELDLTSPEVVTKYKGAAEIVNKALQLVVSECKAKAKIVDLCEKGDAFIKEQTGNMYKNVKKKIERGVAFPTCISVNNTVCHFSPLSSDETVLEEGDIVKIDMGCHIDGFIAVVAHTHVVQGGPVTGRAADVLAAANTAAEVALRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5525" PGL_stop="4287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5525" e_stop="5310"/>
            <exon e_start="5205" e_stop="5069"/>
            <exon e_start="4965" e_stop="4874"/>
            <exon e_start="4735" e_stop="4553"/>
            <exon e_start="4468" e_stop="4287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.784" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="0.732" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.241" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="5525" e_stop="5310" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.784" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5309" i_stop="5206" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5205" e_stop="5069" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5068" i_stop="4966" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4965" e_stop="4874" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.682" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4873" i_stop="4736" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4735" e_stop="4553" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.241">
            <gDNA_intron_boundary i_start="4552" i_stop="4469" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4468" e_stop="4287" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5525" stop="5310"/>
              <exon start="5205" stop="5069"/>
              <exon start="4965" stop="4874"/>
              <exon start="4735" stop="4694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5334" stop="5310"/>
              <exon start="5205" stop="5069"/>
              <exon start="4965" stop="4874"/>
              <exon start="4735" stop="4553"/>
              <exon start="4468" stop="4287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5334" stop="5310"/>
              <exon start="5205" stop="5069"/>
              <exon start="4965" stop="4874"/>
              <exon start="4735" stop="4626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTCGGATGTAACAGAAGCTATTCAGAAAGTTGCTGCAGCATATGACTGCAAGATCGTTGAGGGTGTTTTGAGCCATCAAATGAAACAATTTGTGATTGACGGAAACAAAGTCGTGTTAAGTGTGTCTAATCCTGATACCAGAGTAGATGATGCAGAGTTTGAGGAAAACGAGGTCTATTCAGTTGACATTGTTACGAGCACCGGCGAAGGAAAG : CCAAAGTTGTTGGATGAGAAACAAACAACCATCTACAAGAGAGCTGTAGATAAAAGCTACAACCTGAAGATGAAAGCGTCAAGGTTTATCTTCAGTGAAATCAGTCAGAAGTTCCCTATCATGCCATTTACAGCTAG : GGATTTGGAGGAGAAAAGAGCTCGTTTGGGACTAGTTGAATGTGTTAACCATGATCTTTTGCAGCCGTATCCTGTTCTACATGAGAAACCTG : GTGATTTGGTTGCTCACATAAAATTCACTGCGCTATTGATGCCTAACGGGTCAGATAGGATCACATCTCATGCTCTCCAGGAGCTGTCACCTGCGAAGACAATAGACGATGAACCTGAAATTAAGACCTGGCTAGCCCTTCCCGTAAAAACCAAGAAGAAAGGTGGCGGCAAGAAAAAGAAAG : GCAAGAAAGGTGAATCATGCCAAGCTGAGCCTATGGAAGGCGAACCAAATGTTGCTGAATCTTGATTTCAATTCCAAGAACTATTTGGTTCATTGTTATATTTGATTTTGGGATTACTGAGGTGGTTTTGGATCTTTCTTGCGGCCTTTCGCTATATACACAAGATAGGACAATGATCAGTA</gDNA_template>
            <first_frame> N  S  D  V  T  E  A  I  Q  K  V  A  A  A  Y  D  C  K  I  V  E  G  V  L  S  H  Q  M  K  Q  F  V  I  D  G  N  K  V  V  L  S  V  S  N  P  D  T  R  V  D  D  A  E  F  E  E  N  E  V  Y  S  V  D  I  V  T  S  T  G  E  G  K  :  P  K  L  L  D  E  K  Q  T  T  I  Y  K  R  A  V  D  K  S  Y  N  L  K  M  K  A  S  R  F  I  F  S  E  I  S  Q  K  F  P  I  M  P  F  T  A  R :   D  L  E  E  K  R  A  R  L  G  L  V  E  C  V  N  H  D  L  L  Q  P  Y  P  V  L  H  E  K  P   : G  D  L  V  A  H  I  K  F  T  A  L  L  M  P  N  G  S  D  R  I  T  S  H  A  L  Q  E  L  S  P  A  K  T  I  D  D  E  P  E  I  K  T  W  L  A  L  P  V  K  T  K  K  K  G  G  G  K  K  K  K   : G  K  K  G  E  S  C  Q  A  E  P  M  E  G  E  P  N  V  A  E  S  *  F  Q  F  Q  E  L  F  G  S  L  L  Y  L  I  L  G  L  L  R  W  F  W  I  F  L  A  A  F  R  Y  I  H  K  I  G  Q  *  S  V </first_frame>
            <second_frame>  T  R  M  *  Q  K  L  F  R  K  L  L  Q  H  M  T  A  R  S  L  R  V  F  *  A  I  K  *  N  N  L  *  L  T  E  T  K  S  C  *  V  C  L  I  L  I  P  E  *  M  M  Q  S  L  R  K  T  R  S  I  Q  L  T  L  L  R  A  P  A  K  E  S :   Q  S  C  W  M  R  N  K  Q  P  S  T  R  E  L  *  I  K  A  T  T  *  R  *  K  R  Q  G  L  S  S  V  K  S  V  R  S  S  L  S  C  H  L  Q  L   : G  I  W  R  R  K  E  L  V  W  D  *  L  N  V  L  T  M  I  F  C  S  R  I  L  F  Y  M  R  N  L  :  V  I  W  L  L  T  *  N  S  L  R  Y  *  C  L  T  G  Q  I  G  S  H  L  M  L  S  R  S  C  H  L  R  R  Q  *  T  M  N  L  K  L  R  P  G  *  P  F  P  *  K  P  R  R  K  V  A  A  R  K  R  K  :  A  R  K  V  N  H  A  K  L  S  L  W  K  A  N  Q  M  L  L  N  L  D  F  N  S  K  N  Y  L  V  H  C  Y  I  *  F  W  D  Y  *  G  G  F  G  S  F  L  R  P  F  A  I  Y  T  R  *  D  N  D  Q   </second_frame>
            <third_frame>   L  G  C  N  R  S  Y  S  E  S  C  C  S  I  *  L  Q  D  R  *  G  C  F  E  P  S  N  E  T  I  C  D  *  R  K  Q  S  R  V  K  C  V  *  S  *  Y  Q  S  R  *  C  R  V  *  G  K  R  G  L  F  S  *  H  C  Y  E  H  R  R  R  K   : A  K  V  V  G  *  E  T  N  N  H  L  Q  E  S  C  R  *  K  L  Q  P  E  D  E  S  V  K  V  Y  L  Q  *  N  Q  S  E  V  P  Y  H  A  I  Y  S  *  :  G  F  G  G  E  K  S  S  F  G  T  S  *  M  C  *  P  *  S  F  A  A  V  S  C  S  T  *  E  T  W :   *  F  G  C  S  H  K  I  H  C  A  I  D  A  *  R  V  R  *  D  H  I  S  C  S  P  G  A  V  T  C  E  D  N  R  R  *  T  *  N  *  D  L  A  S  P  S  R  K  N  Q  E  E  R  W  R  Q  E  K  E  R :   Q  E  R  *  I  M  P  S  *  A  Y  G  R  R  T  K  C  C  *  I  L  I  S  I  P  R  T  I  W  F  I  V  I  F  D  F  G  I  T  E  V  V  L  D  L  S  C  G  L  S  L  Y  T  Q  D  R  T  M  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5525" stop="5310"/>
                    <exon start="5205" stop="5069"/>
                    <exon start="4965" stop="4874"/>
                    <exon start="4735" stop="4553"/>
                    <exon start="4468" stop="4404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSDVTEAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYSVDIVTSTGEGKPKLLDEKQTTIYKRAVDKSYNLKMKASRFIFSEISQKFPIMPFTARDLEEKRARLGLVECVNHDLLQPYPVLHEKPGDLVAHIKFTALLMPNGSDRITSHALQELSPAKTIDDEPEIKTWLALPVKTKKKGGGKKKKGKKGESCQAEPMEGEPNVAES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27591" PGL_stop="27167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27591" e_stop="27167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="27591" e_stop="27167" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27591" stop="27167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27591" stop="27167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27590" stop="27167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAACTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAAATTATCAAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTTGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</gDNA_template>
            <first_frame> I  I  Q  G  E  E  W  N  M  G  E  E  D  T  F  E  N  L  K  F  L  N  L  R  L  P  T  L  S  N  W  E  V  G  E  E  S  F  P  N  L  E  K  L  K  L  R  G  C  G  E  L  E  E  I  P  P  S  F  G  D  I  Y  S  L  K  I  I  K  I  V  N  S  P  Q  L  E  D  S  A  L  K  I  K  E  Y  A  E  E  M  R  G  G  G  E  L  Q  I  L  G  Q  K  N  I  P  L  F  K  *  H  Y  G  *  K  V  D  C  T  L  Q  G  T  L  Y  M  I  K  K  T  L  L  Q  L  *  N  I  F  V  D  F  S   </first_frame>
            <second_frame>  S  S  R  E  K  N  G  T  W  G  R  K  T  P  L  R  I  S  N  F  *  T  C  V  Y  R  L  F  P  T  G  R  L  E  R  N  P  S  P  I  L  R  N  *  N  C  G  D  V  V  S  L  R  R  F  H  L  V  L  E  I  F  I  H  *  K  L  S  K  L  *  I  V  L  N  L  K  I  L  L  S  R  L  R  N  T  L  K  R  *  E  E  G  A  S  F  R  S  L  A  R  R  I  S  P  Y  L  S  S  I  M  V  E  K  L  I  V  L  C  R  V  H  C  I  *  L  R  K  L  C  C  S  Y  E  I  F  L  W  I  S  Q  </second_frame>
            <third_frame>   H  P  G  R  R  M  E  H  G  G  G  R  H  L  *  E  S  Q  I  F  E  L  A  S  T  D  S  F  Q  L  G  G  W  R  G  I  L  P  Q  S  *  E  I  K  T  A  G  M  W  *  A  *  G  D  S  T  *  F  W  R  Y  L  F  I  E  N  Y  Q  N  C  K  *  S  S  T  *  R  F  C  S  Q  D  *  G  I  R  *  R  D  E  R  R  G  R  A  S  D  P  W  P  E  E  Y  P  L  I  *  V  A  L  W  L  K  S  *  L  Y  F  A  G  Y  I  V  Y  D  *  E  N  F  V  A  V  M  K  Y  F  C  G  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27591" stop="27265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIQGEEWNMGEEDTFENLKFLNLRLPTLSNWEVGEESFPNLEKLKLRGCGELEEIPPSFGDIYSLKIIKIVNSPQLEDSALKIKEYAEEMRGGGELQILGQKNIPLFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32339" PGL_stop="31040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32339" e_stop="31040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32339" e_stop="31040" e_length="1300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32339" stop="31591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32338" stop="31045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32338" stop="31789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31897" stop="31040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATCATCAATCAATATTTTCTTCATAATTTTCTCTGATAATTTTGGTCATACATATCAATTAATTATTTGTATCGATCGATATCGAGTTAGCTATGGATAGAATAGGAGAGTTGGCATCAAAGAAGGCAGCAGTAATTTTCACAAAGAGTTCATGTTTTATGTGTCATAGTATTAAAGCACTATTTTATGATATTGGAGCAAGTCCAGCAATTCATGAACTTGATGAAGATCCAAAAGGGAAAGAAATGGAGTGGGCATTGAGAAGTTTAGGTTGTAATCCATGTGTTCCTGCTGTTTTTATTGGTGGAAAATATGTTGGATCATGTAAGGATGTTATATCCTTACAAGTTGATGGTTCACTCAAACAAATGCTCATTGATGCCAAAGCTATTTGGTTATAACTAACCAAAAAAAAACACAATAATCAATCAATTTTTCGATCGCGTATCAATCGAAAATCCGTCAAAAAAGCACACGCCTGAAATGTTTTTTTGGATGGGAATTCGGTCGATAGATCGTCGGGAAAGCACTCTGGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACTTCTAATTGAAAATTCCGTCAAAAAAGCACCCGTCTGAGATGTTTTTTTGGATGGGAATTTGGTCGAAAGATCGTCGGGAAAGCACTCTAGGGGATGTTTCTGACGGTCTTTCGATTGGAGCACTCGATTGAGATGTTTCTGACGGACATTTAATTGAAAATTCCATCAAAAAAACGTCTTAAAAGTACTCGTACAGAATGTTTTTGAAGGTATTTCGATCGGAAAATACACTCAATTGGGATTTTTCCAACGGACTTTTAATTGGGAATTCGGTCGAAAAACCGTCAAAAAAGCACTTGTACGGGATGTTTCCGAAGGTGTTTCGATCGAAGAACACACTCGATTGAGATGTTTCCAACGGACTTTAATTGGGAATTCAATCTAAAAACCATCAAAAAAGCACTCGCGGGAATGTTTTCGACAGACTTTTTATCGAAAATTCGATTAGAGTTTGACGGGTTGTAAGTCGAAATTGATTGATTTCTAGTAGTGAAAAAGAAAGAAGAAAAAGAATAGTCTAATGCGTGTGGGTAGGTCCGAAAAAAGGTCGGACCAAATTAGGTTTATTGTAAGTTTTTGTACTAAAAATAACATCTAGGTTCTTAGCTTGTACACAACTTTTTTTTTGTGTGTCAATTTTAACCCAATGTTATTATTTTTTCTTTCTAATTAATTAATCCTCTTTTTCCTTTTAAAGAAATGGA</gDNA_template>
            <first_frame> V  I  I  N  Q  Y  F  L  H  N  F  L  *  *  F  W  S  Y  I  S  I  N  Y  L  Y  R  S  I  S  S  *  L  W  I  E  *  E  S  W  H  Q  R  R  Q  Q  *  F  S  Q  R  V  H  V  L  C  V  I  V  L  K  H  Y  F  M  I  L  E  Q  V  Q  Q  F  M  N  L  M  K  I  Q  K  G  K  K  W  S  G  H  *  E  V  *  V  V  I  H  V  F  L  L  F  L  L  V  E  N  M  L  D  H  V  R  M  L  Y  P  Y  K  L  M  V  H  S  N  K  C  S  L  M  P  K  L  F  G  Y  N  *  P  K  K  N  T  I  I  N  Q  F  F  D  R  V  S  I  E  N  P  S  K  K  H  T  P  E  M  F  F  W  M  G  I  R  S  I  D  R  R  E  S  T  L  G  D  V  S  D  G  L  S  I  G  A  L  D  *  D  V  S  D  G  L  L  I  E  N  S  V  K  K  A  P  V  *  D  V  F  L  D  G  N  L  V  E  R  S  S  G  K  H  S  R  G  C  F  *  R  S  F  D  W  S  T  R  L  R  C  F  *  R  T  F  N  *  K  F  H  Q  K  N  V  L  K  V  L  V  Q  N  V  F  E  G  I  S  I  G  K  Y  T  Q  L  G  F  F  Q  R  T  F  N  W  E  F  G  R  K  T  V  K  K  A  L  V  R  D  V  S  E  G  V  S  I  E  E  H  T  R  L  R  C  F  Q  R  T  L  I  G  N  S  I  *  K  P  S  K  K  H  S  R  E  C  F  R  Q  T  F  Y  R  K  F  D  *  S  L  T  G  C  K  S  K  L  I  D  F  *  *  *  K  R  K  K  K  K  N  S  L  M  R  V  G  R  S  E  K  R  S  D  Q  I  R  F  I  V  S  F  C  T  K  N  N  I  *  V  L  S  L  Y  T  T  F  F  L  C  V  N  F  N  P  M  L  L  F  F  L  S  N  *  L  I  L  F  F  L  L  K  K  W  </first_frame>
            <second_frame>  *  S  S  I  N  I  F  F  I  I  F  S  D  N  F  G  H  T  Y  Q  L  I  I  C  I  D  R  Y  R  V  S  Y  G  *  N  R  R  V  G  I  K  E  G  S  S  N  F  H  K  E  F  M  F  Y  V  S  *  Y  *  S  T  I  L  *  Y  W  S  K  S  S  N  S  *  T  *  *  R  S  K  R  E  R  N  G  V  G  I  E  K  F  R  L  *  S  M  C  S  C  C  F  Y  W  W  K  I  C  W  I  M  *  G  C  Y  I  L  T  S  *  W  F  T  Q  T  N  A  H  *  C  Q  S  Y  L  V  I  T  N  Q  K  K  T  Q  *  S  I  N  F  S  I  A  Y  Q  S  K  I  R  Q  K  S  T  R  L  K  C  F  F  G  W  E  F  G  R  *  I  V  G  K  A  L  W  G  M  F  L  T  V  F  R  L  E  H  S  I  E  M  F  L  T  D  F  *  L  K  I  P  S  K  K  H  P  S  E  M  F  F  W  M  G  I  W  S  K  D  R  R  E  S  T  L  G  D  V  S  D  G  L  S  I  G  A  L  D  *  D  V  S  D  G  H  L  I  E  N  S  I  K  K  T  S  *  K  Y  S  Y  R  M  F  L  K  V  F  R  S  E  N  T  L  N  W  D  F  S  N  G  L  L  I  G  N  S  V  E  K  P  S  K  K  H  L  Y  G  M  F  P  K  V  F  R  S  K  N  T  L  D  *  D  V  S  N  G  L  *  L  G  I  Q  S  K  N  H  Q  K  S  T  R  G  N  V  F  D  R  L  F  I  E  N  S  I  R  V  *  R  V  V  S  R  N  *  L  I  S  S  S  E  K  E  R  R  K  R  I  V  *  C  V  W  V  G  P  K  K  G  R  T  K  L  G  L  L  *  V  F  V  L  K  I  T  S  R  F  L  A  C  T  Q  L  F  F  C  V  S  I  L  T  Q  C  Y  Y  F  F  F  L  I  N  *  S  S  F  S  F  *  R  N  G </second_frame>
            <third_frame>   D  H  Q  S  I  F  S  S  *  F  S  L  I  I  L  V  I  H  I  N  *  L  F  V  S  I  D  I  E  L  A  M  D  R  I  G  E  L  A  S  K  K  A  A  V  I  F  T  K  S  S  C  F  M  C  H  S  I  K  A  L  F  Y  D  I  G  A  S  P  A  I  H  E  L  D  E  D  P  K  G  K  E  M  E  W  A  L  R  S  L  G  C  N  P  C  V  P  A  V  F  I  G  G  K  Y  V  G  S  C  K  D  V  I  S  L  Q  V  D  G  S  L  K  Q  M  L  I  D  A  K  A  I  W  L  *  L  T  K  K  K  H  N  N  Q  S  I  F  R  S  R  I  N  R  K  S  V  K  K  A  H  A  *  N  V  F  L  D  G  N  S  V  D  R  S  S  G  K  H  S  G  G  C  F  *  R  S  F  D  W  S  T  R  L  R  C  F  *  R  T  S  N  *  K  F  R  Q  K  S  T  R  L  R  C  F  F  G  W  E  F  G  R  K  I  V  G  K  A  L  *  G  M  F  L  T  V  F  R  L  E  H  S  I  E  M  F  L  T  D  I  *  L  K  I  P  S  K  K  R  L  K  S  T  R  T  E  C  F  *  R  Y  F  D  R  K  I  H  S  I  G  I  F  P  T  D  F  *  L  G  I  R  S  K  N  R  Q  K  S  T  C  T  G  C  F  R  R  C  F  D  R  R  T  H  S  I  E  M  F  P  T  D  F  N  W  E  F  N  L  K  T  I  K  K  A  L  A  G  M  F  S  T  D  F  L  S  K  I  R  L  E  F  D  G  L  *  V  E  I  D  *  F  L  V  V  K  K  K  E  E  K  E  *  S  N  A  C  G  *  V  R  K  K  V  G  P  N  *  V  Y  C  K  F  L  Y  *  K  *  H  L  G  S  *  L  V  H  N  F  F  F  V  C  Q  F  *  P  N  V  I  I  F  S  F  *  L  I  N  P  L  F  P  F  K  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32274" stop="31936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFVSIDIELAMDRIGELASKKAAVIFTKSSCFMCHSIKALFYDIGASPAIHELDEDPKGKEMEWALRSLGCNPCVPAVFIGGKYVGSCKDVISLQVDGSLKQMLIDAKAIWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31586" stop="31359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFHQKNVLKVLVQNVFEGISIGKYTQLGFFQRTFNWEFGRKTVKKALVRDVSEGVSIEEHTRLRCFQRTLIGNSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38854" PGL_stop="34591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38854" e_stop="38542"/>
            <exon e_start="38209" e_stop="38067"/>
            <exon e_start="37480" e_stop="37418"/>
            <exon e_start="37284" e_stop="37165"/>
            <exon e_start="37068" e_stop="36781"/>
            <exon e_start="36695" e_stop="36378"/>
            <exon e_start="35350" e_stop="34591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38854" e_stop="38542" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38541" i_stop="38210" i_length="332"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38209" e_stop="38067" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.918">
            <gDNA_intron_boundary i_start="38066" i_stop="37481" i_length="586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37480" e_stop="37418" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37417" i_stop="37285" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37284" e_stop="37165" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.636" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37164" i_stop="37069" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37068" e_stop="36781" e_length="288"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36780" i_stop="36696" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36695" e_stop="36378" e_length="318"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.935">
            <gDNA_intron_boundary i_start="36377" i_stop="35351" i_length="1027"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="35350" e_stop="34591" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38854" stop="38542"/>
              <exon start="38209" stop="38067"/>
              <exon start="37480" stop="37418"/>
              <exon start="37284" stop="37271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38854" stop="38542"/>
              <exon start="38209" stop="38067"/>
              <exon start="37480" stop="37418"/>
              <exon start="37284" stop="37274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38800" stop="38542"/>
              <exon start="38209" stop="38067"/>
              <exon start="37480" stop="37418"/>
              <exon start="37284" stop="37165"/>
              <exon start="37068" stop="36978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38120" stop="38067"/>
              <exon start="37480" stop="37418"/>
              <exon start="37284" stop="37165"/>
              <exon start="37068" stop="36781"/>
              <exon start="36695" stop="36689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37181" stop="37165"/>
              <exon start="37068" stop="36781"/>
              <exon start="36695" stop="36378"/>
              <exon start="35350" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36925" stop="36781"/>
              <exon start="36695" stop="36415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277721" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36847" stop="36781"/>
              <exon start="36695" stop="36378"/>
              <exon start="35350" stop="35048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36847" stop="36781"/>
              <exon start="36695" stop="36378"/>
              <exon start="35350" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36695" stop="36378"/>
              <exon start="35350" stop="34949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35340" stop="34591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35340" stop="34593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACAGAGCTGAACTCACTGTACAAACAGTCTCTTTCTCTCTACTTCTAGAGAGAGAAAACACCAAAAACACTCACTCACTCTGTGTTTTACTCTGAACTCATAATCTACACACAAATTGATTTTTTTTTCTGTACATATATATACACGATCTACTTTTTTTCATCAGTTTAGGTTTTTTTTTTTGGTTGATTCTTCCAGTTTTTGTTAGCTGAAGCTAAGCAGATTCAGGTAAAAATGGAGTTATACGGTGGGTCACACTCCGATCGACAGTCGGAATGGGTTCCTGTTGGACCCGAGACCGGTCTTGAAG : AATCAATGAGGAGGTTGGGGTTGTGGAGGAGGGAACCATACCCGGAAAGGTCCGGGACATCGAACTGTTCTTTCTATATGCGTACAGGGTCTTGTGGATATGGTGCTAAATGCCGGTATAATCATCCTCCTGATCGTAGCTCT : GTTGGTGCTGTGCTGTTGGAAAGTAGTGAATATCCAGAACGAATAGGAGAGCCTACATGCCAG : TACTATCTAAGAACAGCAACCTGTAAATTTGGTGCATCATGCAAGTTCCACCATCCAAGAAACTTAGGTGGATCGTTGAGCAATATATCACTAAATGTTTATGGATACCCATTACATCCG : GAGGAAAGAGAATGCTCCTATTATTTGAAAACGGGGCAATGCAAATTTGGTATAACATGTAAATTCCATCATCCTGACCATGCTGAGGTATCAGCGCCAGTGACTGCACGTCCATTTTATCCAACATCGCCTTCTCTTCCTGTTCCTCCTGAAGAATATAACAGTACATCAACTAGCTCTAGAGTAGCAGGACCTCAACTCTTACCCGGTCCTTATGTACCTGGTACTTATGGTCCAGTTTTGCTTCACCCAGGAGTGGTGACCATTCAGAACTGGAGCACTTACTCG : GGACCAGTGAGTCCTGCACTTTCTCCTGGTGCTCAACCCTCTGCTGGGATGGCAACTATTTATGGGATGCCACAACTAGCATCTTCTACGGCTGCCTTTGCAGCACCTTACTCTCCGTTACACTCTGCTGCTGGCCCTTCAAGCAGTGCACTGAGAGAAAATCGTTTTCCAGAAAGACCAGGCCAACCAGTATGTCAATATTACATGAAAACTGGGGACTGTAAATTTGGATCGTCCTGTAAATTTCATCATCCTGCTGACTGGATTGCATCAAAGACAGATTGTACTTTCAGTCCCTTAGGCCTTCCTTTGCGTCCG : GGGGTGCAGTCTTGTTCCTTTTACATGCAAAGAGGATTCTGCAAATTTGGTGGCACATGTAAATTCGATCATCCTATGGGAACAGTACGATATAGTCCATCAGCTTCTTCTCTTCCTGATATACCGAATGCCCCTTAGATGTCGGGATCTTCCCTTACTTTGGCTCCTATTTCATCGCCAGAGTAACAACCCGGATTTGTTACAGGATCCAAGGCGGATCCCTTCTCATAGTGCAGCATCTGGTACTTCTTCAATCCCGAATATGCAACTGTTGAGTCGGGGAAGTTGGCCAGTGAAGTTAATGTAAACATCAAGCCTTATTTAATGCTTTCCTGGTAATTTCTGTATATTTATCAACAATAAATAGCTTAATGTTTTCTTCTTTAAAATTGAAGTATCTCCTCATTGTCTCATTTTATCAATGGTATGAAGTTGCAACTTATCCAAATATAGGAATTTGTCATTATTTGGACCAATTAGGTTGCGGCCCTACCCCCACCCTGCTTAAACGCGGGATGCTTTCTGCGCCAGAGACTTTTCAGTAGAGTAAGAGATGAAGCAAATTAAGATGCATCTCTATCACCACAAGATACTCTCTGTCCCTTAGTTTTGATCTATATAAATCTCTGTTAGTTTCTTTAGAACTAAGGGATTGCTTGGTAGAGTATATTAACAAAAATAATGCATGCGTAACTCTGTGTATTAGTCATATCTTGTTTGGTACATTTTTTCATGCTATGTACTCTATTGTGTATAGACT</gDNA_template>
            <first_frame> F  T  E  L  N  S  L  Y  K  Q  S  L  S  L  Y  F  *  R  E  K  T  P  K  T  L  T  H  S  V  F  Y  S  E  L  I  I  Y  T  Q  I  D  F  F  F  C  T  Y  I  Y  T  I  Y  F  F  S  S  V  *  V  F  F  F  G  *  F  F  Q  F  L  L  A  E  A  K  Q  I  Q  V  K  M  E  L  Y  G  G  S  H  S  D  R  Q  S  E  W  V  P  V  G  P  E  T  G  L  E   : E  S  M  R  R  L  G  L  W  R  R  E  P  Y  P  E  R  S  G  T  S  N  C  S  F  Y  M  R  T  G  S  C  G  Y  G  A  K  C  R  Y  N  H  P  P  D  R  S  S  :  V  G  A  V  L  L  E  S  S  E  Y  P  E  R  I  G  E  P  T  C  Q  :  Y  Y  L  R  T  A  T  C  K  F  G  A  S  C  K  F  H  H  P  R  N  L  G  G  S  L  S  N  I  S  L  N  V  Y  G  Y  P  L  H  P  :  E  E  R  E  C  S  Y  Y  L  K  T  G  Q  C  K  F  G  I  T  C  K  F  H  H  P  D  H  A  E  V  S  A  P  V  T  A  R  P  F  Y  P  T  S  P  S  L  P  V  P  P  E  E  Y  N  S  T  S  T  S  S  R  V  A  G  P  Q  L  L  P  G  P  Y  V  P  G  T  Y  G  P  V  L  L  H  P  G  V  V  T  I  Q  N  W  S  T  Y  S  :  G  P  V  S  P  A  L  S  P  G  A  Q  P  S  A  G  M  A  T  I  Y  G  M  P  Q  L  A  S  S  T  A  A  F  A  A  P  Y  S  P  L  H  S  A  A  G  P  S  S  S  A  L  R  E  N  R  F  P  E  R  P  G  Q  P  V  C  Q  Y  Y  M  K  T  G  D  C  K  F  G  S  S  C  K  F  H  H  P  A  D  W  I  A  S  K  T  D  C  T  F  S  P  L  G  L  P  L  R  P  :  G  V  Q  S  C  S  F  Y  M  Q  R  G  F  C  K  F  G  G  T  C  K  F  D  H  P  M  G  T  V  R  Y  S  P  S  A  S  S  L  P  D  I  P  N  A  P  *  M  S  G  S  S  L  T  L  A  P  I  S  S  P  E  *  Q  P  G  F  V  T  G  S  K  A  D  P  F  S  *  C  S  I  W  Y  F  F  N  P  E  Y  A  T  V  E  S  G  K  L  A  S  E  V  N  V  N  I  K  P  Y  L  M  L  S  W  *  F  L  Y  I  Y  Q  Q  *  I  A  *  C  F  L  L  *  N  *  S  I  S  S  L  S  H  F  I  N  G  M  K  L  Q  L  I  Q  I  *  E  F  V  I  I  W  T  N  *  V  A  A  L  P  P  P  C  L  N  A  G  C  F  L  R  Q  R  L  F  S  R  V  R  D  E  A  N  *  D  A  S  L  S  P  Q  D  T  L  C  P  L  V  L  I  Y  I  N  L  C  *  F  L  *  N  *  G  I  A  W  *  S  I  L  T  K  I  M  H  A  *  L  C  V  L  V  I  S  C  L  V  H  F  F  M  L  C  T  L  L  C  I  D  </first_frame>
            <second_frame>  S  Q  S  *  T  H  C  T  N  S  L  F  L  S  T  S  R  E  R  K  H  Q  K  H  S  L  T  L  C  F  T  L  N  S  *  S  T  H  K  L  I  F  F  S  V  H  I  Y  T  R  S  T  F  F  H  Q  F  R  F  F  F  L  V  D  S  S  S  F  C  *  L  K  L  S  R  F  R  *  K  W  S  Y  T  V  G  H  T  P  I  D  S  R  N  G  F  L  L  D  P  R  P  V  L  K  :  N  Q  *  G  G  W  G  C  G  G  G  N  H  T  R  K  G  P  G  H  R  T  V  L  S  I  C  V  Q  G  L  V  D  M  V  L  N  A  G  I  I  I  L  L  I  V  A  L :   L  V  L  C  C  W  K  V  V  N  I  Q  N  E  *  E  S  L  H  A  S :   T  I  *  E  Q  Q  P  V  N  L  V  H  H  A  S  S  T  I  Q  E  T  *  V  D  R  *  A  I  Y  H  *  M  F  M  D  T  H  Y  I  R :   R  K  E  N  A  P  I  I  *  K  R  G  N  A  N  L  V  *  H  V  N  S  I  I  L  T  M  L  R  Y  Q  R  Q  *  L  H  V  H  F  I  Q  H  R  L  L  F  L  F  L  L  K  N  I  T  V  H  Q  L  A  L  E  *  Q  D  L  N  S  Y  P  V  L  M  Y  L  V  L  M  V  Q  F  C  F  T  Q  E  W  *  P  F  R  T  G  A  L  T  R :   D  Q  *  V  L  H  F  L  L  V  L  N  P  L  L  G  W  Q  L  F  M  G  C  H  N  *  H  L  L  R  L  P  L  Q  H  L  T  L  R  Y  T  L  L  L  A  L  Q  A  V  H  *  E  K  I  V  F  Q  K  D  Q  A  N  Q  Y  V  N  I  T  *  K  L  G  T  V  N  L  D  R  P  V  N  F  I  I  L  L  T  G  L  H  Q  R  Q  I  V  L  S  V  P  *  A  F  L  C  V  R :   G  C  S  L  V  P  F  T  C  K  E  D  S  A  N  L  V  A  H  V  N  S  I  I  L  W  E  Q  Y  D  I  V  H  Q  L  L  L  F  L  I  Y  R  M  P  L  R  C  R  D  L  P  L  L  W  L  L  F  H  R  Q  S  N  N  P  D  L  L  Q  D  P  R  R  I  P  S  H  S  A  A  S  G  T  S  S  I  P  N  M  Q  L  L  S  R  G  S  W  P  V  K  L  M  *  T  S  S  L  I  *  C  F  P  G  N  F  C  I  F  I  N  N  K  *  L  N  V  F  F  F  K  I  E  V  S  P  H  C  L  I  L  S  M  V  *  S  C  N  L  S  K  Y  R  N  L  S  L  F  G  P  I  R  L  R  P  Y  P  H  P  A  *  T  R  D  A  F  C  A  R  D  F  S  V  E  *  E  M  K  Q  I  K  M  H  L  Y  H  H  K  I  L  S  V  P  *  F  *  S  I  *  I  S  V  S  F  F  R  T  K  G  L  L  G  R  V  Y  *  Q  K  *  C  M  R  N  S  V  Y  *  S  Y  L  V  W  Y  I  F  S  C  Y  V  L  Y  C  V  *  T </second_frame>
            <third_frame>   H  R  A  E  L  T  V  Q  T  V  S  F  S  L  L  L  E  R  E  N  T  K  N  T  H  S  L  C  V  L  L  *  T  H  N  L  H  T  N  *  F  F  F  L  Y  I  Y  I  H  D  L  L  F  F  I  S  L  G  F  F  F  W  L  I  L  P  V  F  V  S  *  S  *  A  D  S  G  K  N  G  V  I  R  W  V  T  L  R  S  T  V  G  M  G  S  C  W  T  R  D  R  S  *  R :   I  N  E  E  V  G  V  V  E  E  G  T  I  P  G  K  V  R  D  I  E  L  F  F  L  Y  A  Y  R  V  L  W  I  W  C  *  M  P  V  *  S  S  S  *  S  *  L   : C  W  C  C  A  V  G  K  *  *  I  S  R  T  N  R  R  A  Y  M  P   : V  L  S  K  N  S  N  L  *  I  W  C  I  M  Q  V  P  P  S  K  K  L  R  W  I  V  E  Q  Y  I  T  K  C  L  W  I  P  I  T  S   : G  G  K  R  M  L  L  L  F  E  N  G  A  M  Q  I  W  Y  N  M  *  I  P  S  S  *  P  C  *  G  I  S  A  S  D  C  T  S  I  L  S  N  I  A  F  S  S  C  S  S  *  R  I  *  Q  Y  I  N  *  L  *  S  S  R  T  S  T  L  T  R  S  L  C  T  W  Y  L  W  S  S  F  A  S  P  R  S  G  D  H  S  E  L  E  H  L  L   : G  T  S  E  S  C  T  F  S  W  C  S  T  L  C  W  D  G  N  Y  L  W  D  A  T  T  S  I  F  Y  G  C  L  C  S  T  L  L  S  V  T  L  C  C  W  P  F  K  Q  C  T  E  R  K  S  F  S  R  K  T  R  P  T  S  M  S  I  L  H  E  N  W  G  L  *  I  W  I  V  L  *  I  S  S  S  C  *  L  D  C  I  K  D  R  L  Y  F  Q  S  L  R  P  S  F  A  S   : G  G  A  V  L  F  L  L  H  A  K  R  I  L  Q  I  W  W  H  M  *  I  R  S  S  Y  G  N  S  T  I  *  S  I  S  F  F  S  S  *  Y  T  E  C  P  L  D  V  G  I  F  P  Y  F  G  S  Y  F  I  A  R  V  T  T  R  I  C  Y  R  I  Q  G  G  S  L  L  I  V  Q  H  L  V  L  L  Q  S  R  I  C  N  C  *  V  G  E  V  G  Q  *  S  *  C  K  H  Q  A  L  F  N  A  F  L  V  I  S  V  Y  L  S  T  I  N  S  L  M  F  S  S  L  K  L  K  Y  L  L  I  V  S  F  Y  Q  W  Y  E  V  A  T  Y  P  N  I  G  I  C  H  Y  L  D  Q  L  G  C  G  P  T  P  T  L  L  K  R  G  M  L  S  A  P  E  T  F  Q  *  S  K  R  *  S  K  L  R  C  I  S  I  T  T  R  Y  S  L  S  L  S  F  D  L  Y  K  S  L  L  V  S  L  E  L  R  D  C  L  V  E  Y  I  N  K  N  N  A  C  V  T  L  C  I  S  H  I  L  F  G  T  F  F  H  A  M  Y  S  I  V  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38662" stop="38542"/>
                    <exon start="38209" stop="38067"/>
                    <exon start="37480" stop="37418"/>
                    <exon start="37284" stop="37165"/>
                    <exon start="37068" stop="36781"/>
                    <exon start="36695" stop="36378"/>
                    <exon start="35350" stop="35213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQFLLAEAKQIQVKMELYGGSHSDRQSEWVPVGPETGLEESMRRLGLWRREPYPERSGTSNCSFYMRTGSCGYGAKCRYNHPPDRSSVGAVLLESSEYPERIGEPTCQYYLRTATCKFGASCKFHHPRNLGGSLSNISLNVYGYPLHPEERECSYYLKTGQCKFGITCKFHHPDHAEVSAPVTARPFYPTSPSLPVPPEEYNSTSTSSRVAGPQLLPGPYVPGTYGPVLLHPGVVTIQNWSTYSGPVSPALSPGAQPSAGMATIYGMPQLASSTAAFAAPYSPLHSAAGPSSSALRENRFPERPGQPVCQYYMKTGDCKFGSSCKFHHPADWIASKTDCTFSPLGLPLRPGVQSCSFYMQRGFCKFGGTCKFDHPMGTVRYSPSASSLPDIPNAP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35048" stop="34806"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKHQALFNAFLVISVYLSTINSLMFSSLKLKYLLIVSFYQWYEVATYPNIGICHYLDQLGCGPTPTLLKRGMLSAPETFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34793" stop="34593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLRCISITTRYSLSLSFDLYKSLLVSLELRDCLVEYINKNNACVTLCISHILFGTFFHAMYSIVYR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53955" PGL_stop="54584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53955" e_stop="54389"/>
            <exon e_start="54542" e_stop="54584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.860"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="53955" e_stop="54389" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54390" i_stop="54541" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.860">
            <gDNA_exon_boundary e_start="54542" e_stop="54584" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53955" stop="54389"/>
              <exon start="54542" stop="54583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54196" stop="54389"/>
              <exon start="54542" stop="54584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCCAAGCTAGAAGCATTAGCTCACCTGATATCCGGAGTAATGAAGACTTGGCTAGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACCCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAGCATCTTTCAAGATTCATCATCTTTATTTCTCTTGTGTCGGTACGTGACTCTCCGCTCCCTCATATTCCTTAATCCTCTTGTGTCG : GTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGA</gDNA_template>
            <first_frame> S  P  S  *  K  H  *  L  T  *  Y  P  E  *  *  R  L  G  *  S  Y  C  *  V  E  D  D  G  T  F  A  A  P  H  K  *  T  R  R  K  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  S  I  E  Y  I  S  I  F  Q  D  S  S  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  L  N  P  L  V  S  :  V  R  D  T  R  S  P  K  S  T  C  R  F  V  </first_frame>
            <second_frame>  V  Q  A  R  S  I  S  S  P  D  I  R  S  N  E  D  L  A  R  V  T  V  E  S  K  M  T  A  R  L  L  H  P  T  N  K  Q  E  E  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  A  S  F  K  I  H  H  L  Y  F  S  C  V  G  T  *  L  S  A  P  S  Y  S  L  I  L  L  C  R :   F  V  T  P  D  P  L  N  L  R  V  G  S  * </second_frame>
            <third_frame>   S  K  L  E  A  L  A  H  L  I  S  G  V  M  K  T  W  L  E  L  L  L  S  R  R  *  R  H  V  C  C  T  P  Q  I  N  K  K  K  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  F  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  S  P  L  P  H  I  P  *  S  S  C  V   : G  S  *  H  P  I  P  *  I  Y  V  S  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54219" stop="54389"/>
                    <exon start="54542" stop="54583"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLPSSSHMRTQASIPYSFGNYVHSIEYISIFQDSSSLFLLCRYVTLRSLIFLNPLVSVRDTRSPKSTCRFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="55553" PGL_stop="54896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55553" e_stop="54896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="55553" e_stop="54896" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55553" stop="54896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCAAAGAGTCTTCAGTAAAAATTCAGTCTCTGAACCTTGCGACGACCTGTAGGACGGACCGTCGCAGGCACGACGGGCCGTCGCAGATTGCGTAATCCCAGTTTGGGTCGGATTTCTTATTACGTTTTAAGGGACGTTTTTTACTATTCCTGTTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGCCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGATTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGGAAAAACACAAAGCTTGGGAAATTGCTTTCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATT</gDNA_template>
            <first_frame> E  K  L  A  E  A  T  D  P  T  T  D  R  H  G  H  D  R  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  T  D  R  Q  R  V  F  S  K  N  S  V  S  E  P  C  D  D  L  *  D  G  P  S  Q  A  R  R  A  V  A  D  C  V  I  P  V  W  V  G  F  L  I  T  F  *  G  T  F  F  T  I  P  V  L  I  I  K  L  V  G  *  C  *  *  A  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  I  I  I  A  I  F  H  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  L  N  E  R  E  D  R  T  R  G  K  T  Q  S  L  G  N  C  F  L  D  H  E  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  N  K  L  L  I  A  N  D  M  Y  *  *  Y  </first_frame>
            <second_frame>  K  N  W  Q  K  R  R  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  K  E  S  S  V  K  I  Q  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  I  A  *  S  Q  F  G  S  D  F  L  L  R  F  K  G  R  F  L  L  F  L  F  *  L  *  S  *  W  V  N  V  N  K  P  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  *  T  R  E  R  I  E  R  E  E  K  H  K  A  W  E  I  A  F  L  I  T  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  I  N  S  *  *  R  M  I  C  I  D  N  I </second_frame>
            <third_frame>   K  T  G  R  S  D  G  P  H  D  G  P  S  W  A  R  Q  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  K  S  L  Q  *  K  F  S  L  *  T  L  R  R  P  V  G  R  T  V  A  G  T  T  G  R  R  R  L  R  N  P  S  L  G  R  I  S  Y  Y  V  L  R  D  V  F  Y  Y  S  C  F  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  D  Y  Y  C  H  L  S  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  N  T  K  L  G  K  L  L  S  *  S  R  I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55553" stop="55332"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLAEATDPTTDRHGHDRPSQGLVSKHLENLKLGTENRLSELRDGMAGRTVTGVTDRQRVFSKNSVSEPCDDL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55350" stop="55156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLRRPVGRTVAGTTGRRRLRNPSLGRISYYVLRDVFYYSCFNYKVSGLMLISLITWGLKEVTLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55617" PGL_stop="56068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55617" e_stop="56068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="55617" e_stop="56068" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55617" stop="55942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55617" stop="55911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55618" stop="56068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTTTATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCATTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAAAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTGAGAGAGAGACGCTGGCTAATTTTAGCTAACGTTTGCTATGGAGTACAATTAAATCAAATCATAGCTATTCCATTTATTTTAGGTTGTTAG</gDNA_template>
            <first_frame> *  N  V  C  L  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  H  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  K  R  R  T  R  M  E  S  G  E  R  D  F  *  E  R  D  A  G  *  F  *  L  T  F  A  M  E  Y  N  *  I  K  S  *  L  F  H  L  F  *  V  V   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  F  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  I  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  E  R  E  T  L  A  N  F  S  *  R  L  L  W  S  T  I  K  S  N  H  S  Y  S  I  Y  F  R  L  L  </second_frame>
            <third_frame>   K  C  M  F  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  F  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  F  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  K  E  A  N  E  N  G  E  W  R  A  R  F  L  R  E  R  R  W  L  I  L  A  N  V  C  Y  G  V  Q  L  N  Q  I  I  A  I  P  F  I  L  G  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55808" stop="56068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYIFLHVYIQFSLALYKTETELYTSVYKAKEANENGEWRARFLRERRWLILANVCYGVQLNQIIAIPFILGC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55620" stop="55823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVCLLHNYKCIARRYMFFSRFIQKQKHNIYTSVLYKARENCISLQLYNSHLYNSLAFFSAIFEVKCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="58560" PGL_stop="61769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58560" e_stop="59092"/>
            <exon e_start="59461" e_stop="59799"/>
            <exon e_start="59883" e_stop="60438"/>
            <exon e_start="61736" e_stop="61769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.794" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58560" e_stop="59092" e_length="533"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59461" e_stop="59799" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.794" acc_prob="0.956">
            <gDNA_intron_boundary i_start="59800" i_stop="59882" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="59883" e_stop="60438" e_length="556"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60439" i_stop="61735" i_length="1297"/>
          </intron>
          <exon e_serial="4" e_score="0.706">
            <gDNA_exon_boundary e_start="61736" e_stop="61769" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58560" stop="59060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="59092"/>
              <exon start="59461" stop="59503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="59041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="58884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="59092"/>
              <exon start="59461" stop="59696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="59092"/>
              <exon start="59461" stop="59544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="58984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="58953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58565" stop="58950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="59092"/>
              <exon start="59461" stop="59547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58567" stop="59020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58568" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58575" stop="59011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58613" stop="59092"/>
              <exon start="59461" stop="59503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58619" stop="59092"/>
              <exon start="59461" stop="59572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="59092"/>
              <exon start="59461" stop="59734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="59092"/>
              <exon start="59461" stop="59481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="58922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58674" stop="58962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59544" stop="59799"/>
              <exon start="59883" stop="60364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59692" stop="59799"/>
              <exon start="59883" stop="60438"/>
              <exon start="61736" stop="61769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG : GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTG : GGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCTTGCTGTATCGAGAGGTATAGGAGATCGTTATCTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTCTTAGTCCTTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATCTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCAGTTTTTGTTT : TAAATAAAAAAAATAAAATATAAGCATTTTAAAA</gDNA_template>
            <first_frame> A  I  P  N  Y  F  F  L  K  K  L  K  Q  C  L  V  P  S  L  F  Q  I  H  R  Y  S  R  R  R  L  G  F  R  *  L  I  L  S  Y  V  N  R  R  H  F  H  L  L  R  L  L  G  N  H  L  N  F  E  L  *  R  N  F  L  H  L  L  F  L  L  C  L  R  L  R  N  *  K  F  F  *  L  R  N  L  H  R  Q  R  L  A  L  T  E  I  L  L  S  V  Q  R  L  H  R  F  L  L  L  R  R  F  R  R  G  R  D  L  L  D  W  I  F  R  S  F  R  R  I  L  E  I  F  R  K  L  R  R  Q  R  R  I  L  L  R  L  K  A  M  N  I  L  F  V  V  N  V  E  G  E  V  Q  W  R  I  V  I  L  H  L  S  I  Y  K  E  I  Q  N  R :   V  F  L  V  Y  L  M  D  M  E  D  L  K  L  Q  S  L  Q  Q  S  T  *  I  R  T  L  W  M  N  *  *  G  G  M  M  K  M  L  W  R  C  *  K  M  F  I  *  R  Q  I  P  N  S  S  V  K  N  L  G  V  D  R  V  A  *  Q  H  *  S  E  T  V  I  *  L  Y  L  M  L  V  I  V  A  L  L  L  A  E  V  G  L  Q  K  Q  S  P  Q  I  T  S  L  Q  E  K  T  R  K  T  E  L  R  V  W :   V  V  M  *  I  V  L  M  V  F  G  E  S  R  D  R  L  L  Y  R  E  V  *  E  I  V  I  L  N  N  G  *  S  Q  N  L  R  L  Q  S  L  N  L  I  L  S  W  S  S  *  S  L  H  L  T  V  Y  G  I  K  S  A  I  R  K  *  L  M  L  L  G  L  C  A  A  Q  A  S  V  S  H  N  H  Y  W  P  L  K  S  L  S  I  L  L  F  H  E  V  L  L  M  I  Y  V  *  *  *  F  N  C  N  N  F  G  E  C  I  E  T  V  *  V  A  G  *  I  F  R  S  H  L  T  S  A  D  N  N  G  L  N  *  I  L  E  T  Y  V  Y  M  K  I  A  S  M  T  E  *  F  T  H  E  I  *  T  E  T  R  A  I  M  G  I  E  Y  A  M  S  I  *  I  S  Q  F  L  F  :  *  I  K  K  I  K  Y  K  H  F  K  </first_frame>
            <second_frame>  Q  Y  Q  T  T  F  F  *  K  N  *  S  N  V  L  Y  R  R  Y  S  K  F  T  G  I  L  A  G  D  *  D  S  G  D  *  F  S  L  M  *  I  G  V  I  F  I  F  F  A  F  *  E  I  I  *  I  S  N  F  N  E  I  S  F  I  Y  F  F  F  F  V  S  V  F  A  I  E  N  S  S  D  *  E  I  F  T  G  N  D  *  R  *  Q  K  F  F  *  V  F  N  V  C  T  G  F  Y  F  Y  D  G  F  E  E  E  E  T  C  *  I  G  Y  S  G  R  F  D  E  F  W  K  F  S  G  N  S  D  G  S  G  G  F  C  *  G  *  R  Q  *  I  F  C  L  L  *  T  W  K  E  R  C  N  G  G  S  L  F  C  T  C  Q  F  T  R  R  F  K  T   : G  Y  F  W  C  I  *  W  T  W  R  T  *  S  C  R  V  C  S  R  A  L  E  *  E  H  Y  G  *  I  S  K  E  E  *  *  R  C  C  G  G  A  E  K  C  L  F  K  D  R  Y  R  I  P  Q  *  R  I  W  G  W  I  V  L  R  N  S  I  D  Q  R  R  *  F  S  C  I  *  C  W  *  L  S  R  C  C  *  Q  R  W  D  C  R  S  N  H  L  R  S  Q  A  F  K  K  R  R  E  R  Q  N  *  E  F   : G  W  L  C  R  L  F  *  W  C  L  E  N  P  G  I  A  C  C  I  E  R  Y  R  R  S  L  S  *  T  M  G  D  R  R  T  *  D  Y  S  R  *  T  *  S  *  V  G  V  L  S  P  C  I  *  R  F  M  G  *  S  Q  Q  S  G  S  S  *  C  C  *  A  F  V  L  H  R  H  R  *  A  T  T  I  I  G  L  *  K  A  Y  R  S  C  C  F  T  R  F  C  *  *  Y  M  C  D  D  N  S  T  A  T  I  L  V  N  V  *  K  L  F  E  L  L  D  E  Y  F  V  L  I  *  L  P  R  T  I  M  D  *  I  R  Y  W  R  P  M  Y  I  *  R  L  L  L  *  L  N  S  L  L  M  R  S  K  L  R  R  G  R  *  W  E  L  N  M  Q  C  L  Y  E  F  P  S  F  C  F :   K  *  K  K  *  N  I  S  I  L  K </second_frame>
            <third_frame>   N  T  K  L  L  F  F  K  K  I  K  A  M  S  C  T  V  A  I  P  N  S  P  V  F  S  P  A  T  R  I  P  V  T  N  S  L  L  C  K  S  A  S  F  S  S  S  S  P  S  R  K  S  S  E  F  R  T  L  T  K  F  P  S  F  T  F  S  S  L  S  P  S  S  Q  L  K  I  L  L  I  E  K  S  S  Q  A  T  I  S  V  N  R  N  S  S  E  C  S  T  S  A  P  V  S  T  S  T  T  V  S  K  R  K  R  P  A  R  L  D  I  P  V  V  S  T  N  F  G  N  F  P  E  T  P  T  A  A  A  D  F  V  E  V  E  G  N  E  Y  S  V  C  C  K  R  G  R  R  G  A  M  E  D  R  Y  S  A  L  V  N  L  Q  G  D  S  K  Q  :  G  I  F  G  V  F  D  G  H  G  G  P  K  A  A  E  F  A  A  E  H  L  N  K  N  I  M  D  E  L  V  R  R  N  D  E  D  V  V  E  V  L  K  N  V  Y  L  K  T  D  T  E  F  L  S  E  E  F  G  G  G  S  C  C  V  T  A  L  I  R  D  G  D  L  V  V  S  N  A  G  D  C  R  A  V  V  S  R  G  G  I  A  E  A  I  T  S  D  H  K  P  S  R  K  D  E  K  D  R  I  E  S  L  :  G  G  Y  V  D  C  S  N  G  V  W  R  I  Q  G  S  L  A  V  S  R  G  I  G  D  R  Y  L  K  Q  W  V  I  A  E  P  E  T  T  V  V  E  L  N  P  E  L  E  F  L  V  L  A  S  D  G  L  W  D  K  V  S  N  Q  E  V  V  D  A  A  R  P  L  C  C  T  G  I  G  K  P  Q  P  L  L  A  S  K  K  L  I  D  L  A  V  S  R  G  S  V  N  D  I  C  V  M  I  I  Q  L  Q  Q  F  W  *  M  Y  R  N  C  L  S  C  W  M  N  I  S  F  S  F  N  F  R  G  Q  *  W  I  E  L  D  T  G  D  L  C  I  Y  E  D  C  F  Y  D  *  I  V  Y  S  *  D  L  N  *  D  A  G  D  N  G  N  *  I  C  N  V  Y  M  N  F  P  V  F  V   : L  N  K  K  N  K  I  *  A  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58562" stop="59092"/>
                    <exon start="59461" stop="59799"/>
                    <exon start="59883" stop="60227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKLLFFKKIKAMSCTVAIPNSPVFSPATRIPVTNSLLCKSASFSSSSPSRKSSEFRTLTKFPSFTFSSLSPSSQLKILLIEKSSQATISVNRNSSECSTSAPVSTSTTVSKRKRPARLDIPVVSTNFGNFPETPTAAADFVEVEGNEYSVCCKRGRRGAMEDRYSALVNLQGDSKQGIFGVFDGHGGPKAAEFAAEHLNKNIMDELVRRNDEDVVEVLKNVYLKTDTEFLSEEFGGGSCCVTALIRDGDLVVSNAGDCRAVVSRGGIAEAITSDHKPSRKDEKDRIESLGGYVDCSNGVWRIQGSLAVSRGIGDRYLKQWVIAEPETTVVELNPELEFLVLASDGLWDKVSNQEVVDAARPLCCTGIGKPQPLLASKKLIDLAVSRGSVNDICVMIIQLQQFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58560" e_stop="59092"/>
            <exon e_start="59461" e_stop="59799"/>
            <exon e_start="59883" e_stop="60594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.794" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58560" e_stop="59092" e_length="533"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59093" i_stop="59460" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59461" e_stop="59799" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.794" acc_prob="0.956">
            <gDNA_intron_boundary i_start="59800" i_stop="59882" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59883" e_stop="60594" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58560" stop="59060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="59092"/>
              <exon start="59461" stop="59503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="59041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58561" stop="58884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="59092"/>
              <exon start="59461" stop="59696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="59092"/>
              <exon start="59461" stop="59544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="58984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58562" stop="58953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58565" stop="58950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="59092"/>
              <exon start="59461" stop="59547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58567" stop="59020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58568" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58575" stop="59011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58613" stop="59092"/>
              <exon start="59461" stop="59503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58619" stop="59092"/>
              <exon start="59461" stop="59572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="59092"/>
              <exon start="59461" stop="59734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="59092"/>
              <exon start="59461" stop="59481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58662" stop="58922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58674" stop="58962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59544" stop="59799"/>
              <exon start="59883" stop="60364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60104" stop="60594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAATACCAAACTACTTTTTTTTAAAAAAATTAAAGCAATGTCTTGTACCGTCGCTATTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGCGTCATTTTCATCTTCTTCGCCTTCTAGGAAATCATCTGAATTTCGAACTTTAACGAAATTTCCTTCATTTACTTTTTCTTCTTTGTCTCCGTCTTCGCAATTGAAAATTCTTCTGATTGAGAAATCTTCACAGGCAACGATTAGCGTTAACAGAAATTCTTCTGAGTGTTCAACGTCTGCACCGGTTTCTACTTCTACGACGGTTTCGAAGAGGAAGAGACCTGCTAGATTGGATATTCCGGTCGTTTCGACGAATTTTGGAAATTTTCCGGAAACTCCGACGGCAGCGGCGGATTTTGTTGAGGTTGAAGGCAATGAATATTCTGTTTGTTGTAAACGTGGAAGGAGAGGTGCAATGGAGGATCGTTATTCTGCACTTGTCAATTTACAAGGAGATTCAAAACAG : GGTATTTTTGGTGTATTTGATGGACATGGAGGACCTAAAGCTGCAGAGTTTGCAGCAGAGCACTTGAATAAGAACATTATGGATGAATTAGTAAGGAGGAATGATGAAGATGTTGTGGAGGTGCTGAAAAATGTTTATTTAAAGACAGATACCGAATTCCTCAGTGAAGAATTTGGGGGTGGATCGTGTTGCGTAACAGCATTGATCAGAGACGGTGATTTAGTTGTATCTAATGCTGGTGATTGTCGCGCTGTTGTTAGCAGAGGTGGGATTGCAGAAGCAATCACCTCAGATCACAAGCCTTCAAGAAAAGACGAGAAAGACAGAATTGAGAGTTTG : GGTGGTTATGTAGATTGTTCTAATGGTGTTTGGAGAATCCAGGGATCGCTTGCTGTATCGAGAGGTATAGGAGATCGTTATCTTAAACAATGGGTGATCGCAGAACCTGAGACTACAGTCGTTGAACTTAATCCTGAGTTGGAGTTCTTAGTCCTTGCATCTGACGGTTTATGGGATAAAGTCAGCAATCAGGAAGTAGTTGATGCTGCTAGGCCTTTGTGCTGCACAGGCATCGGTAAGCCACAACCATTATTGGCCTCTAAAAAGCTTATCGATCTTGCTGTTTCACGAGGTTCTGTTAATGATATATGTGTGATGATAATTCAACTGCAACAATTTTGGTGAATGTATAGAAACTGTTTGAGTTGCTGGATGAATATTTCGTTCTCATTTAACTTCCGCGGACAATAATGGATTGAATTAGATACTGGAGACCTATGTATATATGAAGATTGCTTCTATGACTGAATAGTTTACTCATGAGATCTAAACTGAGACGCGGGCGATAATGGGAATTGAATATGCAATGTCTATATGAATTTCCCAGTTTTTGTTTATGGTTTATGATGAAATTTTCTTCTTTTCCTTTTCATTTGAACTTCACTGTTTCGAGAGGCTTAAAGATTGAATGATATTGATGTATAGTCTCTTAGGTTTTTTAGTAGTAGTTCATGAAATCTTGAATAATATTCCGTTTACGATGAACATACCA</gDNA_template>
            <first_frame> A  I  P  N  Y  F  F  L  K  K  L  K  Q  C  L  V  P  S  L  F  Q  I  H  R  Y  S  R  R  R  L  G  F  R  *  L  I  L  S  Y  V  N  R  R  H  F  H  L  L  R  L  L  G  N  H  L  N  F  E  L  *  R  N  F  L  H  L  L  F  L  L  C  L  R  L  R  N  *  K  F  F  *  L  R  N  L  H  R  Q  R  L  A  L  T  E  I  L  L  S  V  Q  R  L  H  R  F  L  L  L  R  R  F  R  R  G  R  D  L  L  D  W  I  F  R  S  F  R  R  I  L  E  I  F  R  K  L  R  R  Q  R  R  I  L  L  R  L  K  A  M  N  I  L  F  V  V  N  V  E  G  E  V  Q  W  R  I  V  I  L  H  L  S  I  Y  K  E  I  Q  N  R :   V  F  L  V  Y  L  M  D  M  E  D  L  K  L  Q  S  L  Q  Q  S  T  *  I  R  T  L  W  M  N  *  *  G  G  M  M  K  M  L  W  R  C  *  K  M  F  I  *  R  Q  I  P  N  S  S  V  K  N  L  G  V  D  R  V  A  *  Q  H  *  S  E  T  V  I  *  L  Y  L  M  L  V  I  V  A  L  L  L  A  E  V  G  L  Q  K  Q  S  P  Q  I  T  S  L  Q  E  K  T  R  K  T  E  L  R  V  W :   V  V  M  *  I  V  L  M  V  F  G  E  S  R  D  R  L  L  Y  R  E  V  *  E  I  V  I  L  N  N  G  *  S  Q  N  L  R  L  Q  S  L  N  L  I  L  S  W  S  S  *  S  L  H  L  T  V  Y  G  I  K  S  A  I  R  K  *  L  M  L  L  G  L  C  A  A  Q  A  S  V  S  H  N  H  Y  W  P  L  K  S  L  S  I  L  L  F  H  E  V  L  L  M  I  Y  V  *  *  *  F  N  C  N  N  F  G  E  C  I  E  T  V  *  V  A  G  *  I  F  R  S  H  L  T  S  A  D  N  N  G  L  N  *  I  L  E  T  Y  V  Y  M  K  I  A  S  M  T  E  *  F  T  H  E  I  *  T  E  T  R  A  I  M  G  I  E  Y  A  M  S  I  *  I  S  Q  F  L  F  M  V  Y  D  E  I  F  F  F  S  F  S  F  E  L  H  C  F  E  R  L  K  D  *  M  I  L  M  Y  S  L  L  G  F  L  V  V  V  H  E  I  L  N  N  I  P  F  T  M  N  I  P </first_frame>
            <second_frame>  Q  Y  Q  T  T  F  F  *  K  N  *  S  N  V  L  Y  R  R  Y  S  K  F  T  G  I  L  A  G  D  *  D  S  G  D  *  F  S  L  M  *  I  G  V  I  F  I  F  F  A  F  *  E  I  I  *  I  S  N  F  N  E  I  S  F  I  Y  F  F  F  F  V  S  V  F  A  I  E  N  S  S  D  *  E  I  F  T  G  N  D  *  R  *  Q  K  F  F  *  V  F  N  V  C  T  G  F  Y  F  Y  D  G  F  E  E  E  E  T  C  *  I  G  Y  S  G  R  F  D  E  F  W  K  F  S  G  N  S  D  G  S  G  G  F  C  *  G  *  R  Q  *  I  F  C  L  L  *  T  W  K  E  R  C  N  G  G  S  L  F  C  T  C  Q  F  T  R  R  F  K  T   : G  Y  F  W  C  I  *  W  T  W  R  T  *  S  C  R  V  C  S  R  A  L  E  *  E  H  Y  G  *  I  S  K  E  E  *  *  R  C  C  G  G  A  E  K  C  L  F  K  D  R  Y  R  I  P  Q  *  R  I  W  G  W  I  V  L  R  N  S  I  D  Q  R  R  *  F  S  C  I  *  C  W  *  L  S  R  C  C  *  Q  R  W  D  C  R  S  N  H  L  R  S  Q  A  F  K  K  R  R  E  R  Q  N  *  E  F   : G  W  L  C  R  L  F  *  W  C  L  E  N  P  G  I  A  C  C  I  E  R  Y  R  R  S  L  S  *  T  M  G  D  R  R  T  *  D  Y  S  R  *  T  *  S  *  V  G  V  L  S  P  C  I  *  R  F  M  G  *  S  Q  Q  S  G  S  S  *  C  C  *  A  F  V  L  H  R  H  R  *  A  T  T  I  I  G  L  *  K  A  Y  R  S  C  C  F  T  R  F  C  *  *  Y  M  C  D  D  N  S  T  A  T  I  L  V  N  V  *  K  L  F  E  L  L  D  E  Y  F  V  L  I  *  L  P  R  T  I  M  D  *  I  R  Y  W  R  P  M  Y  I  *  R  L  L  L  *  L  N  S  L  L  M  R  S  K  L  R  R  G  R  *  W  E  L  N  M  Q  C  L  Y  E  F  P  S  F  C  L  W  F  M  M  K  F  S  S  F  P  F  H  L  N  F  T  V  S  R  G  L  K  I  E  *  Y  *  C  I  V  S  *  V  F  *  *  *  F  M  K  S  *  I  I  F  R  L  R  *  T  Y   </second_frame>
            <third_frame>   N  T  K  L  L  F  F  K  K  I  K  A  M  S  C  T  V  A  I  P  N  S  P  V  F  S  P  A  T  R  I  P  V  T  N  S  L  L  C  K  S  A  S  F  S  S  S  S  P  S  R  K  S  S  E  F  R  T  L  T  K  F  P  S  F  T  F  S  S  L  S  P  S  S  Q  L  K  I  L  L  I  E  K  S  S  Q  A  T  I  S  V  N  R  N  S  S  E  C  S  T  S  A  P  V  S  T  S  T  T  V  S  K  R  K  R  P  A  R  L  D  I  P  V  V  S  T  N  F  G  N  F  P  E  T  P  T  A  A  A  D  F  V  E  V  E  G  N  E  Y  S  V  C  C  K  R  G  R  R  G  A  M  E  D  R  Y  S  A  L  V  N  L  Q  G  D  S  K  Q  :  G  I  F  G  V  F  D  G  H  G  G  P  K  A  A  E  F  A  A  E  H  L  N  K  N  I  M  D  E  L  V  R  R  N  D  E  D  V  V  E  V  L  K  N  V  Y  L  K  T  D  T  E  F  L  S  E  E  F  G  G  G  S  C  C  V  T  A  L  I  R  D  G  D  L  V  V  S  N  A  G  D  C  R  A  V  V  S  R  G  G  I  A  E  A  I  T  S  D  H  K  P  S  R  K  D  E  K  D  R  I  E  S  L  :  G  G  Y  V  D  C  S  N  G  V  W  R  I  Q  G  S  L  A  V  S  R  G  I  G  D  R  Y  L  K  Q  W  V  I  A  E  P  E  T  T  V  V  E  L  N  P  E  L  E  F  L  V  L  A  S  D  G  L  W  D  K  V  S  N  Q  E  V  V  D  A  A  R  P  L  C  C  T  G  I  G  K  P  Q  P  L  L  A  S  K  K  L  I  D  L  A  V  S  R  G  S  V  N  D  I  C  V  M  I  I  Q  L  Q  Q  F  W  *  M  Y  R  N  C  L  S  C  W  M  N  I  S  F  S  F  N  F  R  G  Q  *  W  I  E  L  D  T  G  D  L  C  I  Y  E  D  C  F  Y  D  *  I  V  Y  S  *  D  L  N  *  D  A  G  D  N  G  N  *  I  C  N  V  Y  M  N  F  P  V  F  V  Y  G  L  *  *  N  F  L  L  F  L  F  I  *  T  S  L  F  R  E  A  *  R  L  N  D  I  D  V  *  S  L  R  F  F  S  S  S  S  *  N  L  E  *  Y  S  V  Y  D  E  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58562" stop="59092"/>
                    <exon start="59461" stop="59799"/>
                    <exon start="59883" stop="60227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKLLFFKKIKAMSCTVAIPNSPVFSPATRIPVTNSLLCKSASFSSSSPSRKSSEFRTLTKFPSFTFSSLSPSSQLKILLIEKSSQATISVNRNSSECSTSAPVSTSTTVSKRKRPARLDIPVVSTNFGNFPETPTAAADFVEVEGNEYSVCCKRGRRGAMEDRYSALVNLQGDSKQGIFGVFDGHGGPKAAEFAAEHLNKNIMDELVRRNDEDVVEVLKNVYLKTDTEFLSEEFGGGSCCVTALIRDGDLVVSNAGDCRAVVSRGGIAEAITSDHKPSRKDEKDRIESLGGYVDCSNGVWRIQGSLAVSRGIGDRYLKQWVIAEPETTVVELNPELEFLVLASDGLWDKVSNQEVVDAARPLCCTGIGKPQPLLASKKLIDLAVSRGSVNDICVMIIQLQQFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62394" PGL_stop="62648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62394" e_stop="62648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="62394" e_stop="62648" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62394" stop="62648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NTGAAATTATTCACCTTTAAAGGGAAATAAGAAAAAGAAAGTACTTAATGAATTAGGAGGATATATAATATTAAAGAAATTTAAAGGTTAAAATAACAAACGAATAAAAGTTAATGGCTCAATCGACTAATGACACTAGTCATGTAGATCAAGGTCATGGTATAGTATATGATCAATGTTGTAATAGTTTGTGATTATATGTATTTTGTGAGATATTAATTGATCCTAATTATTAGTCATTTGATAATTACCTAT</gDNA_template>
            <first_frame> L  K  L  F  T  F  K  G  K  *  E  K  E  S  T  *  *  I  R  R  I  Y  N  I  K  E  I  *  R  L  K  *  Q  T  N  K  S  *  W  L  N  R  L  M  T  L  V  M  *  I  K  V  M  V  *  Y  M  I  N  V  V  I  V  C  D  Y  M  Y  F  V  R  Y  *  L  I  L  I  I  S  H  L  I  I  T  Y </first_frame>
            <second_frame>  *  N  Y  S  P  L  K  G  N  K  K  K  K  V  L  N  E  L  G  G  Y  I  I  L  K  K  F  K  G  *  N  N  K  R  I  K  V  N  G  S  I  D  *  *  H  *  S  C  R  S  R  S  W  Y  S  I  *  S  M  L  *  *  F  V  I  I  C  I  L  *  D  I  N  *  S  *  L  L  V  I  *  *  L  P   </second_frame>
            <third_frame>   E  I  I  H  L  *  R  E  I  R  K  R  K  Y  L  M  N  *  E  D  I  *  Y  *  R  N  L  K  V  K  I  T  N  E  *  K  L  M  A  Q  S  T  N  D  T  S  H  V  D  Q  G  H  G  I  V  Y  D  Q  C  C  N  S  L  *  L  Y  V  F  C  E  I  L  I  D  P  N  Y  *  S  F  D  N  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0019E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82468" PGL_stop="75135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82468" e_stop="82224"/>
            <exon e_start="80938" e_stop="80754"/>
            <exon e_start="80354" e_stop="80165"/>
            <exon e_start="79188" e_stop="79037"/>
            <exon e_start="78365" e_stop="78250"/>
            <exon e_start="78156" e_stop="77910"/>
            <exon e_start="77831" e_stop="77775"/>
            <exon e_start="77641" e_stop="77489"/>
            <exon e_start="76767" e_stop="76687"/>
            <exon e_start="76408" e_stop="76322"/>
            <exon e_start="76040" e_stop="76036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.625" e_score="0.993"/>
          <exon-intron don_prob="0.972" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.612" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.989"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="82468" e_stop="82224" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82223" i_stop="80939" i_length="1285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80938" e_stop="80754" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80753" i_stop="80355" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80354" e_stop="80165" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="80164" i_stop="79189" i_length="976"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="79188" e_stop="79037" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.625">
            <gDNA_intron_boundary i_start="79036" i_stop="78366" i_length="671"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78365" e_stop="78250" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.885">
            <gDNA_intron_boundary i_start="78249" i_stop="78157" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="78156" e_stop="77910" e_length="247"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.612">
            <gDNA_intron_boundary i_start="77909" i_stop="77832" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77831" e_stop="77775" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.942">
            <gDNA_intron_boundary i_start="77774" i_stop="77642" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77641" e_stop="77489" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="77488" i_stop="76768" i_length="721"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76767" e_stop="76687" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76686" i_stop="76409" i_length="278"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="76408" e_stop="76322" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="76321" i_stop="76041" i_length="281"/>
          </intron>
          <exon e_serial="11" e_score="0.400">
            <gDNA_exon_boundary e_start="76040" e_stop="76036" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82468" stop="82224"/>
              <exon start="80938" stop="80754"/>
              <exon start="80354" stop="80165"/>
              <exon start="79188" stop="79075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82371" stop="82224"/>
              <exon start="80938" stop="80754"/>
              <exon start="80354" stop="80165"/>
              <exon start="79188" stop="79082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82281" stop="82224"/>
              <exon start="80938" stop="80754"/>
              <exon start="80354" stop="80165"/>
              <exon start="79188" stop="79104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80309" stop="80165"/>
              <exon start="79188" stop="79037"/>
              <exon start="78365" stop="78250"/>
              <exon start="78156" stop="78078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79087" stop="79037"/>
              <exon start="78365" stop="78250"/>
              <exon start="78156" stop="77910"/>
              <exon start="77831" stop="77775"/>
              <exon start="77641" stop="77489"/>
              <exon start="76767" stop="76687"/>
              <exon start="76408" stop="76322"/>
              <exon start="76040" stop="76036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG : TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT : GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG : GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG : AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC : TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG : GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG : AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : TGAAG</gDNA_template>
            <first_frame> T  S  A  T  Y  N  R  Q  I  P  F  L  S  P  F  F  Q  S  S  N  A  V  N  T  H  E  N  P  S  R  I  S  S  P  T  G  Y  L  R  H  R  S  P  L  L  H  F  L  R  S  Q  G  Y  F  A  L  F  L  *  V  P  C  I  G  C  S  T  S  D  S  Q  M  L  R  C  Y  F  S  S  F  I  S :   G  R  L  S  E  V  Q  G  G  C  Q  A  W  E  F  D  P  P  L  Q  V  Y  I  L  R  S  L  N  S  G  P  C  L  P  L  S  S  E  G  R  *  *  G  S  S  E  L  L  V  R  V  C  R  A  W  F  E  S  F  *  C   : W  S  I  Q  C  D  W  G  P  A  N  N  G  N  C  C  K  R  E  H  G  D  N  Y  G  S  P  *  R  K  Q  N  R  G  I  *  G  R  S  N  E  H  S  S  *  D  Y  G  K  M  E  T  S  M  H  K  *  A  S  *  S  I  L  W :   R  L  G  W  F  L  L  I  *  Y  C  A  L  R  R  E  K  E  A  T  F  L  K  C  S  N  G  *  *  E  P  S  *  S  S  S  R  T  L  *  *  C  N  C  V  *  S  C  G  K   : E  S  I  C  H  T  L  G  A  V  R  S  L  C  F  S  R  G  G  L  Q  *  W  Y  N  Q  I  R  S  F  V  V  *  S  T  *  Y  C  T  :  S  Y  T  G  F  R  V  D  K  T  S  Y  *  S  I  W  Y  F  I  E  K  F  N  H  D  K  R  R  L  P  E  G  C  F  K  G  Q  G  T  Y  P  C  W  G  H  F  P  N  C  S  *  S  T  F  *  K  T  N  L  C  R  S  I  *  S  I  Q  S  T  K  N  R  K  S  K  S  L  Y  D  L  S  T   : G  S  G  V  Y  T  C  C  F  *  S  *  N  S  Y  S  S  E  E   : E  N  S  Y  Q  S  A  P  S  R  D  Y  *  K  R  *  D  T  *  G  R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : V  K </first_frame>
            <second_frame>  P  L  Q  H  I  T  V  K  F  H  F  F  H  H  F  F  K  A  Q  M  L  *  T  L  M  K  T  L  A  V  S  H  H  R  P  V  I  S  G  T  G  H  R  S  S  I  F  S  G  H  R  A  T  S  L  S  F  S  R  S  P  V  S  A  A  R  L  R  I  L  K  C  S  A  A  I  S  P  P  S  L   : V  D  D  S  V  K  F  K  E  A  A  K  H  G  N  L  I  P  L  Y  R  S  I  F  S  D  H  L  T  P  V  L  A  Y  R  C  L  V  K  E  D  D  R  E  A  P  S  F  L  F  E  S  V  E  P  G  L  K  A  S  N  V  :  G  R  Y  S  V  I  G  A  Q  P  T  M  E  I  V  A  K  E  N  M  V  T  I  M  D  H  L  E  G  S  R  T  E  E  F  E  E  D  P  M  S  I  P  R  R  I  M  E  K  W  K  P  Q  C  I  N  E  L  P  E  A  F  C   : G  G  W  V  G  F  F  S  Y  D  T  V  R  Y  V  E  K  K  K  L  P  F  S  N  A  P  M  D  D  R  N  L  P  D  L  H  L  G  L  Y  D  D  V  I  V  F  D  H  V  E  K  :  K  A  F  V  I  H  W  V  R  L  D  R  F  A  S  V  E  E  A  Y  N  D  G  T  T  R  L  E  A  L  L  S  R  V  H  D  I  V  P :   P  T  L  A  S  G  S  I  K  L  H  T  S  L  F  G  T  S  L  K  N  S  T  M  T  S  E  D  Y  Q  K  A  V  L  K  A  K  E  H  I  L  A  G  D  I  F  Q  I  V  L  S  Q  R  F  E  R  R  T  F  A  D  P  F  E  V  Y  R  A  L  R  I  V  N  P  S  P  Y  M  T  Y  L  Q  :  A  R  G  C  I  L  V  A  S  S  P  E  I  L  T  R  V  K  K  :  K  T  V  T  N  R  P  L  A  G  T  I  R  R  G  K  T  L  E  E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  *   </second_frame>
            <third_frame>   L  C  N  I  *  P  S  N  S  I  S  F  T  I  F  S  K  L  K  C  C  K  H  S  *  K  P  *  P  Y  L  I  T  D  R  L  S  P  A  P  V  T  A  P  P  F  S  P  V  T  G  L  L  R  S  L  S  L  G  P  L  Y  R  L  L  D  F  G  F  S  N  A  P  L  L  F  L  L  L  H  *  :  W  T  T  Q  *  S  S  R  R  L  P  S  M  G  I  *  S  P  S  T  G  L  Y  S  P  I  T  *  L  R  S  L  L  T  A  V  *  *  R  K  M  I  G  K  L  R  A  S  C  S  S  L  *  S  L  V  *  K  L  L  M  L :   V  D  T  V  *  L  G  P  S  Q  Q  W  K  L  L  Q  K  R  T  W  *  Q  L  W  I  T  L  K  E  A  E  Q  R  N  L  R  K  I  Q  *  A  F  L  V  G  L  W  K  N  G  N  L  N  A  *  M  S  F  L  K  H  F  V  :  E  V  G  L  V  S  S  H  M  I  L  C  V  T  *  R  K  R  S  Y  L  S  Q  M  L  Q  W  M  I  G  T  F  L  I  F  I  *  D  F  M  M  M  *  L  C  L  I  M  W  K  R :   K  H  L  S  Y  I  G  C  G  *  I  A  L  L  Q  *  R  R  P  T  M  M  V  Q  P  D  *  K  L  C  C  L  E  Y  M  I  L  Y   : L  L  H  W  L  Q  G  R  *  N  F  I  L  V  Y  L  V  L  H  *  K  I  Q  P  *  Q  A  K  T  T  R  R  L  F  *  R  P  R  N  I  S  L  L  G  T  F  S  K  L  F  L  V  N  V  L  K  D  E  P  L  Q  I  H  L  K  Y  T  E  H  *  E  S  *  I  Q  V  L  I  *  L  I  Y  R :   L  G  G  V  Y  L  L  L  L  V  L  K  F  L  L  E  *  R  R :   K  Q  L  P  I  G  P  *  Q  G  L  L  E  E  V  R  H  L  R  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  S :   E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82401" stop="82224"/>
                    <exon start="80938" stop="80754"/>
                    <exon start="80354" stop="80165"/>
                    <exon start="79188" stop="79037"/>
                    <exon start="78365" stop="78250"/>
                    <exon start="78156" stop="77910"/>
                    <exon start="77831" stop="77775"/>
                    <exon start="77641" stop="77489"/>
                    <exon start="76767" stop="76687"/>
                    <exon start="76408" stop="76322"/>
                    <exon start="76040" stop="76038"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLMKTLAVSHHRPVISGTGHRSSIFSGHRATSLSFSRSPVSAARLRILKCSAAISPPSLVDDSVKFKEAAKHGNLIPLYRSIFSDHLTPVLAYRCLVKEDDREAPSFLFESVEPGLKASNVGRYSVIGAQPTMEIVAKENMVTIMDHLEGSRTEEFEEDPMSIPRRIMEKWKPQCINELPEAFCGGWVGFFSYDTVRYVEKKKLPFSNAPMDDRNLPDLHLGLYDDVIVFDHVEKKAFVIHWVRLDRFASVEEAYNDGTTRLEALLSRVHDIVPPTLASGSIKLHTSLFGTSLKNSTMTSEDYQKAVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKKTVTNRPLAGTIRRGKTLEEDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77584" e_stop="77489"/>
            <exon e_start="76767" e_stop="76687"/>
            <exon e_start="76408" e_stop="76322"/>
            <exon e_start="75843" e_stop="75135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77584" e_stop="77489" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="77488" i_stop="76768" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76767" e_stop="76687" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76686" i_stop="76409" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76408" e_stop="76322" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76321" i_stop="75844" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="75843" e_stop="75135" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77584" stop="77489"/>
              <exon start="76767" stop="76687"/>
              <exon start="76408" stop="76322"/>
              <exon start="75843" stop="75490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77583" stop="77489"/>
              <exon start="76767" stop="76687"/>
              <exon start="76408" stop="76322"/>
              <exon start="75843" stop="75536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75710" stop="75135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</gDNA_template>
            <first_frame> E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  V  K  A  M  E  L  I  D  Q  L  E  V  T  R  R  G  P  Y  S  G  G  F  G  G  I  S  F  T  G  E  M  D  I  A  L  A  L  R  T  I  V  F  P  T  G  T  R  Y  D  T  M  Y  S  Y  K  D  V  D  K  R  R  D  W  I  A  Y  L  Q  A  G  A  G  I  V  A  D  S  D  P  A  D  E  Q  N  E  C  E  N  K  A  A  A  L  V  R  A  I  D  L  A  E  S  S  F  V  D  K  *  *  M  P  S  *  C  Q  I  L  F  R  R  L  F  R  F  L  L  D  V  E  S  S  F  S  I  *  I  V  R  Y  V  G  R  *  L  K  I  P  I  H  T  H  T  H  N  V  I  V  I  A  Y  V  G  F  I  N  F  S  R  V  S  Q  R  A  Q  N  W  H  C  D  L  *  F  S  G  C  Q  L  I  S  V  F  G  F  F  R  V  L  W  L  Y  P  R  A  I  R  N  L  T  S  L  L  L  *  D  N  I  S  L  H  P  A  L  S  R  L  N  L  W  H  C  T  L  N  Y  D  L  </first_frame>
            <second_frame>  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  R :   *  K  P  W  S  *  L  I  N  W  K  S  Q  G  V  D  H  T  A  V  D  L  E  E  F  P  L  P  E  K  W  T  L  P  *  L  *  E  P  *  Y  F  Q  L  E  R  V  T  T  L  C  T  R  T  R  M  S  T  S  D  E  I  G  L  L  I  S  K  L  E  Q  V  *  W  L  I  V  T  Q  L  M  S  K  M  N  A  K  I  K  L  Q  L  L  S  V  P  L  I  L  L  S  L  H  L  L  T  N  N  R  C  R  P  S  V  R  F  C  F  V  D  Y  F  V  S  C  W  M  *  K  V  R  F  Q  S  E  *  S  V  M  L  G  G  D  *  K  S  P  S  T  H  T  L  T  M  S  *  S  L  R  M  L  A  S  S  I  L  A  G  C  H  K  E  P  R  I  G  I  V  T  Y  S  S  L  A  V  N  *  F  Q  Y  L  A  F  F  G  F  C  G  C  T  L  G  L  S  E  T  *  P  L  Y  F  C  R  I  I  L  V  C  I  L  P  S  P  D  S  T  Y  G  I  V  L  *  I  M  I  L </second_frame>
            <third_frame>   R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : G  K  S  H  G  A  N  *  S  T  G  S  H  K  A  W  T  I  Q  R  W  I  W  R  N  F  L  Y  R  R  N  G  H  C  L  S  F  E  N  H  S  I  S  N  W  N  A  L  R  H  Y  V  L  V  Q  G  C  R  Q  A  T  R  L  D  C  L  S  P  S  W  S  R  Y  S  G  *  *  *  P  S  *  *  A  K  *  M  R  K  *  S  C  S  S  C  P  C  H  *  S  C  *  V  F  I  C  *  Q  I  I  D  A  V  L  V  S  D  F  V  S  S  I  I  S  F  L  V  G  C  R  K  F  V  F  N  L  N  S  P  L  C  W  E  V  T  E  N  P  H  P  H  T  H  S  Q  C  H  S  H  C  V  C  W  L  H  Q  F  *  Q  G  V  T  K  S  P  E  L  A  L  *  L  I  V  L  W  L  S  I  D  F  S  I  W  L  F  S  G  S  V  V  V  P  *  G  Y  Q  K  P  N  L  S  T  F  V  G  *  Y  *  F  A  S  C  P  L  Q  T  Q  L  M  A  L  Y  S  K  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77584" stop="77489"/>
                    <exon start="76767" stop="76687"/>
                    <exon start="76408" stop="76322"/>
                    <exon start="75843" stop="75520"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGISFTGEMDIALALRTIVFPTGTRYDTMYSYKDVDKRRDWIAYLQAGAGIVADSDPADEQNECENKAAALVRAIDLAESSFVDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93659" PGL_stop="85269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93659" e_stop="93627"/>
            <exon e_start="92711" e_stop="92649"/>
            <exon e_start="92573" e_stop="88825"/>
            <exon e_start="87858" e_stop="87839"/>
            <exon e_start="86132" e_stop="86128"/>
            <exon e_start="85351" e_stop="85269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.999" e_score="0.909"/>
          <exon-intron don_prob="0.918" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.900" acc_prob="0.961" e_score="0.918"/>
          <exon-intron don_prob="0.000" acc_prob="0.381" e_score="0.700"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="93659" e_stop="93627" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93626" i_stop="92712" i_length="915"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="92711" e_stop="92649" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92648" i_stop="92574" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="92573" e_stop="88825" e_length="3749"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.961">
            <gDNA_intron_boundary i_start="88824" i_stop="87859" i_length="966"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="87858" e_stop="87839" e_length="20"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.381">
            <gDNA_intron_boundary i_start="87838" i_stop="86133" i_length="1706"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="86132" e_stop="86128" e_length="5"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86127" i_stop="85352" i_length="776"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85351" e_stop="85269" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93659" stop="93627"/>
              <exon start="92711" stop="92649"/>
              <exon start="92573" stop="88825"/>
              <exon start="87858" stop="87839"/>
              <exon start="86132" stop="86128"/>
              <exon start="85351" stop="85269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93659" stop="93627"/>
              <exon start="92711" stop="92649"/>
              <exon start="92573" stop="88825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTCTCTAGCTAAACTTTAGCCTGTGTGAAG : GTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAACAAACAACTCATTG : GTGTTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTACCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAAAAGACAAGAGGTTGAGAAACTGCTTCAACCACTTTTGGATGATGATGTCTTTACTAGCCTCACCAGTAATATGGATGATTGTATCAGCTTGTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTTTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACCTAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGACGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGACTGATGAAGACTCTCGACTCTCCGAGCTAGATGCGGATGAACCAAATGATAGAGTCTCTCGACTTTTCAAGCTAGCACATCTACTCTTGAAGATTGTCCCGGTTGAACTGGAGGTTATGCACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCTGAAGTTGGACTCTTCATTAAGCAGCTTCTAGAAACCTCTCCAGATATTCTGAGAGAATATCTAATTCATCTGCAAGAGCACATGGTAAGTGTTATTACCCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGCTGGAATTCCTGTTGATTATCCTTTCTGATATGCCCAAGGGCTTTATTCATCATGACAAACTTTTTGATCTCTTGGATCGTGTTGGAACACTTACCAGGGATGTATCAACTCTTGTACACGATTTGGAAGAGAAATTAAGGAATAAACAGGGTAACGACCAAACAAATCGTGCAACACTAGACTTGCTAAAAGATATTGAACTCCTCAAGGAAGACCTCAAACATGTTTATCTGAAGTCACCGGATTCATATCAATGTTTCTTCCCCATGAGTGATGGACCGCTCTTCATGCATATGTTGCACCTACACGTAAATGATTTGTTAGATTCAAATGCTTATTCAGTTTCTTTGATTAAGGAAGAAATTGAGCTGGTGAAGCAAGACCTGGAATTCATAAGATCATTCTTTGTGGATGCTGAGCAAGGATTGTATAAAGATATTTGGGCACGTATTCTAGATGTGGCTTATGAGGCAAAAGATGTCATTGATTCAATTATTGTTAGAGATAATGGTCTCTTACATCTTCTTTTCTCACTTCCCATTACCATAAAGAAGATGAAGCTTATCAAAGAAGAGGTTTCTGATTTACATGAGAAGATTCTGAAGAACAGAGGTCTCATTGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGCAAGTCATTGACAACTGATAAAATAGTTGTAGGTTTTGAGGAGGAGACAAAATGGATACTTAGAAAGCTCACTAGTGGACCTACAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAATCAGTTTCTAGCCATTTCGACCTTCATGCATGGTGCACGGTCGACCAAGGATGTGATGAGAAGAAGTTGTTGAATAAAATTTTCAAACAAGTTAGTGACTCAGATTCAAAATTGAGTGAGGATATTGATGTTGCTGATAAGCTACGGAAACAACTGTATGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACAACTACATGGGATGAGTTGACAAGACCTTTTCCTGAATCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGATCAGAAGAAAGTTGGGAATTATTACAGAAAAGGGCATTTGGAAACGAGAGTTGCCCTAATGAACTATTAGATGTCGGTAAAGAAATCGCCGAAAATTGTAAAGGTCTTCCTTTGGTGGCTGATCTAATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTTTAAATAATTCGCATTCCTTTATTTTGAAGAATGAAGTGGAAGTGATGAAAGTTATTGAAATAAGTTATGACCACTTATCTGATCATCTGAAGCCATGCTTGCTGTATTTTGCAAGTTGGCCGAAGGACACTATAATGACAATCTATGAGTTGAATGGTTTTTTGGGTGGTGAAGGATTTGTGGGGAAGACAGAGATGAAGAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCGAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGAGTACCCGACTTACCAACTTCATGATCTTGTGCATGATTATTGTTTGATAAAAGCAAGAAAGGAAAATCTGTTTGATCGGATAAGATCAAGTGCTCCATCAGATTTGTTGCCTCGTCAAATTACCATTGATGATAAGGAGCACTTTGGGCTTAATTTTGTCATGTTCGATTCAAATAAGAAAAGGCATTCTGGTAAACACCTCTATTCTTTGGGGATAAATGGAGACCAACTGGATGACAGTGTTTCTGATGCATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGGACCTGGATAACTCTTTTATCATGGTGAATGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTGGGACAGAAGTTAAATATCTGCCTTTGTCTTTCTCAAACCTCTGGAATCTAGAAATCTTGTCGGTGAATAACAAAGAATCAACCTTGATACTATTACCAAGAATTTGGGATCTTGTAAAGCTGCGAGCGCTGTTCGTGAGTGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATTGCAGAGGACACAAAGTTAGAGAACTTGAGAATATTAGGGGAACTGGTGATTTCCTATTTGAAAGATACAAAGAATATTTTCAAAAGGTTTCCCAATCTTCAGGTGCTTCAGTTTGAACTCAAGGAGTCATGGGATTATTCAACAGAGCAATATTGGTTCCCGAAATTGGATTGCCTAACTGAACTAGAACAACTCAGTGTAAGTTTTGAAAGTTCAAACACAAACCACATTGGGTCCTCTGTAGCGACAAATCGGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAACAACTGTTGTTGTCTGACTTTCCTCTGACATCCGATTCGCTATCAACAATAGCGAGACTGCACAACCTAGAAGAGTTGTCCCTTTATGATGCAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTATGAATCTCAAATTTTTGAACTTGTGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGGATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAATATTCTGCTCTCAAGATTAAGGAATATGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAAAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAACTTTGCTGGGTGACATTGTATATGACAA : GATTTAAGACGAAGAAGAAA : ATTTG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA</gDNA_template>
            <first_frame> G  F  S  S  *  T  L  A  C  V  K  :  V  L  R  K  S  R  I  M  E  K  R  K  D  N  E  E  T  N  N  S  L  :  V  L  F  S  A  L  S  K  D  I  A  D  V  L  V  Y  L  E  N  E  E  N  Q  K  A  L  D  K  D  Q  V  E  K  L  K  L  K  M  A  F  I  C  T  Y  V  Q  L  S  Y  S  D  F  E  Q  F  E  D  I  M  T  R  K  R  Q  E  V  E  K  L  L  Q  P  L  L  D  D  D  V  F  T  S  L  T  S  N  M  D  D  C  I  S  L  Y  K  S  D  A  I  M  M  D  E  Q  L  D  F  L  L  L  N  L  Y  H  L  S  K  H  H  A  E  K  I  F  P  G  V  T  Q  Y  E  V  L  Q  N  V  C  G  N  L  R  D  F  H  G  L  I  V  N  G  C  I  K  H  E  T  V  E  N  V  L  P  L  F  Q  L  M  A  E  R  V  G  H  F  L  W  E  D  Q  T  D  E  D  S  R  L  S  E  L  D  A  D  E  P  N  D  R  V  S  R  L  F  K  L  A  H  L  L  L  K  I  V  P  V  E  L  E  V  M  H  I  C  Y  T  N  L  K  A  S  T  S  A  E  V  G  L  F  I  K  Q  L  L  E  T  S  P  D  I  L  R  E  Y  L  I  H  L  Q  E  H  M  V  S  V  I  T  P  S  T  S  G  A  R  N  I  H  V  M  L  E  F  L  L  I  I  L  S  D  M  P  K  G  F  I  H  H  D  K  L  F  D  L  L  D  R  V  G  T  L  T  R  D  V  S  T  L  V  H  D  L  E  E  K  L  R  N  K  Q  G  N  D  Q  T  N  R  A  T  L  D  L  L  K  D  I  E  L  L  K  E  D  L  K  H  V  Y  L  K  S  P  D  S  Y  Q  C  F  F  P  M  S  D  G  P  L  F  M  H  M  L  H  L  H  V  N  D  L  L  D  S  N  A  Y  S  V  S  L  I  K  E  E  I  E  L  V  K  Q  D  L  E  F  I  R  S  F  F  V  D  A  E  Q  G  L  Y  K  D  I  W  A  R  I  L  D  V  A  Y  E  A  K  D  V  I  D  S  I  I  V  R  D  N  G  L  L  H  L  L  F  S  L  P  I  T  I  K  K  M  K  L  I  K  E  E  V  S  D  L  H  E  K  I  L  K  N  R  G  L  I  V  V  N  S  P  K  K  P  V  E  S  K  S  L  T  T  D  K  I  V  V  G  F  E  E  E  T  K  W  I  L  R  K  L  T  S  G  P  T  D  L  D  V  I  S  I  T  G  M  P  G  S  G  K  T  T  L  A  Y  K  V  Y  N  D  K  S  V  S  S  H  F  D  L  H  A  W  C  T  V  D  Q  G  C  D  E  K  K  L  L  N  K  I  F  K  Q  V  S  D  S  D  S  K  L  S  E  D  I  D  V  A  D  K  L  R  K  Q  L  Y  G  K  R  Y  L  I  V  L  D  D  V  W  D  T  T  T  W  D  E  L  T  R  P  F  P  E  S  K  K  G  S  R  I  I  L  T  T  R  E  K  E  V  A  L  H  G  K  L  N  T  D  P  L  D  L  R  L  L  R  S  E  E  S  W  E  L  L  Q  K  R  A  F  G  N  E  S  C  P  N  E  L  L  D  V  G  K  E  I  A  E  N  C  K  G  L  P  L  V  A  D  L  I  A  G  V  I  A  G  R  E  K  K  R  S  V  W  L  E  V  L  N  N  S  H  S  F  I  L  K  N  E  V  E  V  M  K  V  I  E  I  S  Y  D  H  L  S  D  H  L  K  P  C  L  L  Y  F  A  S  W  P  K  D  T  I  M  T  I  Y  E  L  N  G  F  L  G  G  E  G  F  V  G  K  T  E  M  K  S  M  E  E  V  V  K  I  Y  M  D  D  L  I  S  S  S  L  V  I  C  F  N  E  I  G  E  Y  P  T  Y  Q  L  H  D  L  V  H  D  Y  C  L  I  K  A  R  K  E  N  L  F  D  R  I  R  S  S  A  P  S  D  L  L  P  R  Q  I  T  I  D  D  K  E  H  F  G  L  N  F  V  M  F  D  S  N  K  K  R  H  S  G  K  H  L  Y  S  L  G  I  N  G  D  Q  L  D  D  S  V  S  D  A  F  H  L  R  H  L  R  L  L  R  V  L  D  L  D  N  S  F  I  M  V  N  D  S  L  L  N  E  I  C  M  L  N  H  L  R  Y  L  R  I  G  T  E  V  K  Y  L  P  L  S  F  S  N  L  W  N  L  E  I  L  S  V  N  N  K  E  S  T  L  I  L  L  P  R  I  W  D  L  V  K  L  R  A  L  F  V  S  A  C  S  F  F  D  M  D  A  D  E  S  I  L  I  A  E  D  T  K  L  E  N  L  R  I  L  G  E  L  V  I  S  Y  L  K  D  T  K  N  I  F  K  R  F  P  N  L  Q  V  L  Q  F  E  L  K  E  S  W  D  Y  S  T  E  Q  Y  W  F  P  K  L  D  C  L  T  E  L  E  Q  L  S  V  S  F  E  S  S  N  T  N  H  I  G  S  S  V  A  T  N  R  P  W  D  F  H  F  P  S  N  L  K  Q  L  L  L  S  D  F  P  L  T  S  D  S  L  S  T  I  A  R  L  H  N  L  E  E  L  S  L  Y  D  A  I  I  Q  G  E  E  W  N  M  G  E  E  D  T  F  M  N  L  K  F  L  N  L  C  L  P  T  L  S  K  W  E  V  G  E  E  S  F  P  N  L  E  K  L  K  L  Q  G  C  G  K  L  E  E  I  P  P  S  F  G  D  I  Y  S  L  K  F  I  K  I  V  K  S  P  Q  L  E  Y  S  A  L  K  I  K  E  Y  A  E  E  M  R  G  G  S  E  L  Q  I  L  G  Q  K  N  I  P  L  F  K  *  H  Y  G  *  T  L  L  G  D  I  V  Y  D  K :   I  *  D  E  E  E   : N  L  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  G  S  L  A  K  L  *  P  V  *  R :   S  *  E  K  V  E  S  W  K  N  E  K  I  M  K  K  Q  T  T  H  W :   C  Y  F  L  L  L  A  R  T  L  P  M  F  W  F  T  *  R  M  R  K  I  K  K  L  L  T  K  I  K  L  K  S  *  N  *  K  W  H  L  F  V  H  M  F  S  F  L  I  P  I  L  S  S  L  K  I  *  *  L  E  K  D  K  R  L  R  N  C  F  N  H  F  W  M  M  M  S  L  L  A  S  P  V  I  W  M  I  V  S  A  C  I  N  Q  M  P  S  *  W  M  S  N  W  T  S  S  F  *  I  C  I  I  Y  P  S  I  T  L  K  R  Y  F  L  E  *  L  N  M  K  F  F  R  M  Y  V  A  T  *  E  I  S  M  G  *  *  *  M  V  A  L  S  M  R  R  L  R  M  S  Y  L  C  F  N  *  W  L  K  E  *  D  T  S  F  G  R  I  R  L  M  K  T  L  D  S  P  S  *  M  R  M  N  Q  M  I  E  S  L  D  F  S  S  *  H  I  Y  S  *  R  L  S  R  L  N  W  R  L  C  T  Y  V  I  Q  T  *  K  L  Q  L  Q  L  K  L  D  S  S  L  S  S  F  *  K  P  L  Q  I  F  *  E  N  I  *  F  I  C  K  S  T  W  *  V  L  L  P  L  A  L  Q  G  L  E  T  F  M  S  C  W  N  S  C  *  L  S  F  L  I  C  P  R  A  L  F  I  M  T  N  F  L  I  S  W  I  V  L  E  H  L  P  G  M  Y  Q  L  L  Y  T  I  W  K  R  N  *  G  I  N  R  V  T  T  K  Q  I  V  Q  H  *  T  C  *  K  I  L  N  S  S  R  K  T  S  N  M  F  I  *  S  H  R  I  H  I  N  V  S  S  P  *  V  M  D  R  S  S  C  I  C  C  T  Y  T  *  M  I  C  *  I  Q  M  L  I  Q  F  L  *  L  R  K  K  L  S  W  *  S  K  T  W  N  S  *  D  H  S  L  W  M  L  S  K  D  C  I  K  I  F  G  H  V  F  *  M  W  L  M  R  Q  K  M  S  L  I  Q  L  L  L  E  I  M  V  S  Y  I  F  F  S  H  F  P  L  P  *  R  R  *  S  L  S  K  K  R  F  L  I  Y  M  R  R  F  *  R  T  E  V  S  L  L  *  T  L  P  R  N  Q  L  R  A  S  H  *  Q  L  I  K  *  L  *  V  L  R  R  R  Q  N  G  Y  L  E  S  S  L  V  D  L  Q  I  *  M  S  F  R  S  L  V  C  R  V  Q  V  K  L  L  W  H  T  K  Y  T  M  I  N  Q  F  L  A  I  S  T  F  M  H  G  A  R  S  T  K  D  V  M  R  R  S  C  *  I  K  F  S  N  K  L  V  T  Q  I  Q  N  *  V  R  I  L  M  L  L  I  S  Y  G  N  N  C  M  E  R  G  I  L  L  S  *  M  T  C  G  I  Q  L  H  G  M  S  *  Q  D  L  F  L  N  L  R  K  E  V  G  L  F  *  Q  L  E  K  R  K  W  L  C  M  E  S  *  T  L  I  L  L  T  F  D  C  *  D  Q  K  K  V  G  N  Y  Y  R  K  G  H  L  E  T  R  V  A  L  M  N  Y  *  M  S  V  K  K  S  P  K  I  V  K  V  F  L  W  W  L  I  *  L  L  E  S  L  L  G  G  K  R  K  G  V  C  G  L  K  F  *  I  I  R  I  P  L  F  *  R  M  K  W  K  *  *  K  L  L  K  *  V  M  T  T  Y  L  I  I  *  S  H  A  C  C  I  L  Q  V  G  R  R  T  L  *  *  Q  S  M  S  *  M  V  F  W  V  V  K  D  L  W  G  R  Q  R  *  R  V  W  K  K  W  *  R  F  I  W  M  I  *  F  R  V  A  W  *  F  V  S  M  R  *  V  S  T  R  L  T  N  F  M  I  L  C  M  I  I  V  *  *  K  Q  E  R  K  I  C  L  I  G  *  D  Q  V  L  H  Q  I  C  C  L  V  K  L  P  L  M  I  R  S  T  L  G  L  I  L  S  C  S  I  Q  I  R  K  G  I  L  V  N  T  S  I  L  W  G  *  M  E  T  N  W  M  T  V  F  L  M  H  F  T  *  D  T  *  G  F  L  E  C  W  T  W  I  T  L  L  S  W  *  M  I  L  C  *  M  K  Y  A  C  *  I  I  *  G  T  *  E  L  G  Q  K  L  N  I  C  L  C  L  S  Q  T  S  G  I  *  K  S  C  R  *  I  T  K  N  Q  P  *  Y  Y  Y  Q  E  F  G  I  L  *  S  C  E  R  C  S  *  V  L  V  L  S  L  I  W  M  Q  M  N  Q  Y  *  L  Q  R  T  Q  S  *  R  T  *  E  Y  *  G  N  W  *  F  P  I  *  K  I  Q  R  I  F  S  K  G  F  P  I  F  R  C  F  S  L  N  S  R  S  H  G  I  I  Q  Q  S  N  I  G  S  R  N  W  I  A  *  L  N  *  N  N  S  V  *  V  L  K  V  Q  T  Q  T  T  L  G  P  L  *  R  Q  I  G  R  G  I  F  T  S  L  Q  I  *  N  N  C  C  C  L  T  F  L  *  H  P  I  R  Y  Q  Q  *  R  D  C  T  T  *  K  S  C  P  F  M  M  Q  S  S  R  E  K  N  G  T  W  G  R  K  T  P  L  *  I  S  N  F  *  T  C  V  Y  R  L  F  P  S  G  R  L  E  R  N  P  S  P  I  L  R  N  *  N  C  R  D  V  V  S  L  R  R  F  H  L  V  L  E  I  F  I  H  *  N  L  S  K  L  *  R  V  L  N  L  N  I  L  L  S  R  L  R  N  M  L  K  R  *  E  E  G  A  S  F  R  S  L  A  K  R  I  S  P  Y  L  S  S  I  M  V  E  L  C  W  V  T  L  Y  M  T   : R  F  K  T  K  K  K  :  I  C :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  </second_frame>
            <third_frame>   V  L  *  L  N  F  S  L  C  E   : G  L  E  K  K  *  N  H  G  K  T  K  R  *  *  R  N  K  Q  L  I   : G  V  I  F  C  S  *  Q  G  H  C  R  C  S  G  L  P  R  E  *  G  K  S  K  S  S  *  Q  R  S  S  *  K  A  K  I  E  N  G  I  Y  L  Y  I  C  S  A  F  L  F  R  F  *  A  V  *  R  Y  N  D  *  K  K  T  R  G  *  E  T  A  S  T  T  F  G  *  *  C  L  Y  *  P  H  Q  *  Y  G  *  L  Y  Q  L  V  *  I  R  C  H  H  D  G  *  A  I  G  L  P  P  F  E  S  V  S  S  I  Q  A  S  R  *  K  D  I  S  W  S  D  S  I  *  S  S  S  E  C  M  W  Q  P  K  R  F  P  W  V  D  S  E  W  L  H  *  A  *  D  G  *  E  C  L  T  S  V  S  T  D  G  *  K  S  R  T  L  P  L  G  G  S  D  *  *  R  L  S  T  L  R  A  R  C  G  *  T  K  *  *  S  L  S  T  F  Q  A  S  T  S  T  L  E  D  C  P  G  *  T  G  G  Y  A  H  M  L  Y  K  L  E  S  F  N  F  S  *  S  W  T  L  H  *  A  A  S  R  N  L  S  R  Y  S  E  R  I  S  N  S  S  A  R  A  H  G  K  C  Y  Y  P  *  H  F  R  G  S  K  H  S  C  H  A  G  I  P  V  D  Y  P  F  *  Y  A  Q  G  L  Y  S  S  *  Q  T  F  *  S  L  G  S  C  W  N  T  Y  Q  G  C  I  N  S  C  T  R  F  G  R  E  I  K  E  *  T  G  *  R  P  N  K  S  C  N  T  R  L  A  K  R  Y  *  T  P  Q  G  R  P  Q  T  C  L  S  E  V  T  G  F  I  S  M  F  L  P  H  E  *  W  T  A  L  H  A  Y  V  A  P  T  R  K  *  F  V  R  F  K  C  L  F  S  F  F  D  *  G  R  N  *  A  G  E  A  R  P  G  I  H  K  I  I  L  C  G  C  *  A  R  I  V  *  R  Y  L  G  T  Y  S  R  C  G  L  *  G  K  R  C  H  *  F  N  Y  C  *  R  *  W  S  L  T  S  S  F  L  T  S  H  Y  H  K  E  D  E  A  Y  Q  R  R  G  F  *  F  T  *  E  D  S  E  E  Q  R  S  H  C  C  E  L  S  Q  E  T  S  *  E  Q  V  I  D  N  *  *  N  S  C  R  F  *  G  G  D  K  M  D  T  *  K  A  H  *  W  T  Y  R  S  R  C  H  F  D  H  W  Y  A  G  F  R  *  N  Y  F  G  I  Q  S  I  Q  *  *  I  S  F  *  P  F  R  P  S  C  M  V  H  G  R  P  R  M  *  *  E  E  V  V  E  *  N  F  Q  T  S  *  *  L  R  F  K  I  E  *  G  Y  *  C  C  *  *  A  T  E  T  T  V  W  K  E  V  S  Y  C  L  R  *  R  V  G  Y  N  Y  M  G  *  V  D  K  T  F  S  *  I  *  E  R  K  *  D  Y  F  D  N  S  R  K  G  S  G  F  A  W  K  A  E  H  *  S  S  *  P  S  I  A  K  I  R  R  K  L  G  I  I  T  E  K  G  I  W  K  R  E  L  P  *  *  T  I  R  C  R  *  R  N  R  R  K  L  *  R  S  S  F  G  G  *  S  N  C  W  S  H  C  W  E  G  K  E  K  E  C  V  A  *  S  F  K  *  F  A  F  L  Y  F  E  E  *  S  G  S  D  E  S  Y  *  N  K  L  *  P  L  I  *  S  S  E  A  M  L  A  V  F  C  K  L  A  E  G  H  Y  N  D  N  L  *  V  E  W  F  F  G  W  *  R  I  C  G  E  D  R  D  E  E  Y  G  R  S  G  E  D  L  Y  G  *  F  N  F  E  *  L  G  N  L  F  Q  *  D  R  *  V  P  D  L  P  T  S  *  S  C  A  *  L  L  F  D  K  S  K  K  G  K  S  V  *  S  D  K  I  K  C  S  I  R  F  V  A  S  S  N  Y  H  *  *  *  G  A  L  W  A  *  F  C  H  V  R  F  K  *  E  K  A  F  W  *  T  P  L  F  F  G  D  K  W  R  P  T  G  *  Q  C  F  *  C  I  S  P  K  T  L  E  A  S  *  S  V  G  P  G  *  L  F  Y  H  G  E  *  F  F  A  E  *  N  M  H  V  E  S  F  E  V  L  K  N  W  D  R  S  *  I  S  A  F  V  F  L  K  P  L  E  S  R  N  L  V  G  E  *  Q  R  I  N  L  D  T  I  T  K  N  L  G  S  C  K  A  A  S  A  V  R  E  C  L  F  F  L  *  Y  G  C  R  *  I  N  I  D  C  R  G  H  K  V  R  E  L  E  N  I  R  G  T  G  D  F  L  F  E  R  Y  K  E  Y  F  Q  K  V  S  Q  S  S  G  A  S  V  *  T  Q  G  V  M  G  L  F  N  R  A  I  L  V  P  E  I  G  L  P  N  *  T  R  T  T  Q  C  K  F  *  K  F  K  H  K  P  H  W  V  L  C  S  D  K  S  A  V  G  F  S  L  P  F  K  F  E  T  T  V  V  V  *  L  S  S  D  I  R  F  A  I  N  N  S  E  T  A  Q  P  R  R  V  V  P  L  *  C  N  H  P  G  R  R  M  E  H  G  G  G  R  H  L  Y  E  S  Q  I  F  E  L  V  S  T  D  S  F  Q  V  G  G  W  R  G  I  L  P  Q  S  *  E  I  K  T  A  G  M  W  *  A  *  G  D  S  T  *  F  W  R  Y  L  F  I  E  I  Y  Q  N  C  K  E  S  S  T  *  I  F  C  S  Q  D  *  G  I  C  *  R  D  E  R  R  E  R  A  S  D  P  W  P  K  E  Y  P  L  I  *  V  A  L  W  L  N  F  A  G  *  H  C  I  *  Q  :  D  L  R  R  R  R  K :   F   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93644" stop="93627"/>
                    <exon start="92711" stop="92649"/>
                    <exon start="92573" stop="88866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>3786</number_coding_nucleotides>
                  <number_encoded_amino_acids>1262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLACVKVLRKSRIMEKRKDNEETNNSLVLFSALSKDIADVLVYLENEENQKALDKDQVEKLKLKMAFICTYVQLSYSDFEQFEDIMTRKRQEVEKLLQPLLDDDVFTSLTSNMDDCISLYKSDAIMMDEQLDFLLLNLYHLSKHHAEKIFPGVTQYEVLQNVCGNLRDFHGLIVNGCIKHETVENVLPLFQLMAERVGHFLWEDQTDEDSRLSELDADEPNDRVSRLFKLAHLLLKIVPVELEVMHICYTNLKASTSAEVGLFIKQLLETSPDILREYLIHLQEHMVSVITPSTSGARNIHVMLEFLLIILSDMPKGFIHHDKLFDLLDRVGTLTRDVSTLVHDLEEKLRNKQGNDQTNRATLDLLKDIELLKEDLKHVYLKSPDSYQCFFPMSDGPLFMHMLHLHVNDLLDSNAYSVSLIKEEIELVKQDLEFIRSFFVDAEQGLYKDIWARILDVAYEAKDVIDSIIVRDNGLLHLLFSLPITIKKMKLIKEEVSDLHEKILKNRGLIVVNSPKKPVESKSLTTDKIVVGFEEETKWILRKLTSGPTDLDVISITGMPGSGKTTLAYKVYNDKSVSSHFDLHAWCTVDQGCDEKKLLNKIFKQVSDSDSKLSEDIDVADKLRKQLYGKRYLIVLDDVWDTTTWDELTRPFPESKKGSRIILTTREKEVALHGKLNTDPLDLRLLRSEESWELLQKRAFGNESCPNELLDVGKEIAENCKGLPLVADLIAGVIAGREKKRSVWLEVLNNSHSFILKNEVEVMKVIEISYDHLSDHLKPCLLYFASWPKDTIMTIYELNGFLGGEGFVGKTEMKSMEEVVKIYMDDLISSSLVICFNEIGEYPTYQLHDLVHDYCLIKARKENLFDRIRSSAPSDLLPRQITIDDKEHFGLNFVMFDSNKKRHSGKHLYSLGINGDQLDDSVSDAFHLRHLRLLRVLDLDNSFIMVNDSLLNEICMLNHLRYLRIGTEVKYLPLSFSNLWNLEILSVNNKESTLILLPRIWDLVKLRALFVSACSFFDMDADESILIAEDTKLENLRILGELVISYLKDTKNIFKRFPNLQVLQFELKESWDYSTEQYWFPKLDCLTELEQLSVSFESSNTNHIGSSVATNRPWDFHFPSNLKQLLLSDFPLTSDSLSTIARLHNLEELSLYDAIIQGEEWNMGEEDTFMNLKFLNLCLPTLSKWEVGEESFPNLEKLKLQGCGKLEEIPPSFGDIYSLKFIKIVKSPQLEYSALKIKEYAEEMRGGSELQILGQKNIPLFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86642" PGL_stop="87049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86642" e_stop="87049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="86642" e_stop="87049" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86642" stop="86867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86652" stop="87049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86706" stop="87034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTTTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAAGTTTGATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGCTATTGTAAGAAAATAACAGAATTAAAATGATATTATG</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  K  H  *  K  F  F  F  L  C  I  F  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  K  F  D  L  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  F  S  A  S  S  Y  F  C  F  C  L  L  T  L  *  I  Q  A  I  V  R  K  *  Q  N  *  N  D  I  M </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  S  N  T  E  N  F  S  F  S  A  F  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  S  L  I  C  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  F  I  F  F  L  L  H  L  I  S  V  S  V  Y  *  P  Y  K  Y  R  L  L  *  E  N  N  R  I  K  M  I  L   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  Q  T  L  K  I  F  L  S  L  H  F  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  F  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  C  K  K  I  T  E  L  K  *  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0019E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="100897" PGL_stop="101435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100897" e_stop="101435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100897" e_stop="101435" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100897" stop="101435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCGACAATATATTTTGATATTTAGAAGTCGTTTAAGAGGATTTGTGTAATTTTCTTAATTTTTTGTGTGTTAATCCATGGTGATATAACTTTCATTCAATTTTTAATTTTTTTTTTATGGAATCTTCCGTAATGAATTGAAAAACATAGACATATAGTCTGATTATGATCCACCACTTTTTTGGCATTTAGAAATCATATAATCGGAAATATATAATTTTTTCAAATTTTAGCATATGTTAGCAAGTAAATATTTTGATCAGTAATTAATTTATTCTTTTAAAAAAAACTTTATGAGGTATTAACTTAATTTACACGTTTCTCAATTTGTCAATTTCTTGTATTTGACAAAAGCAATAAATCTGTAAACTCACAGCAATTCCATTTGCTACCGTCTTTTTCAGCACTATATCTGATTTTTATTTGGGGCTTTTGTCTTGAGTTATCTTCTTTGCTTAGCAAGGTAATTTTCAACAATTCAATTGAAATCATATGGGAATCTTTGATTATTTCTACTTCATTATGGAATTGACAT</gDNA_template>
            <first_frame> F  D  R  Q  Y  I  L  I  F  R  S  R  L  R  G  F  V  *  F  S  *  F  F  V  C  *  S  M  V  I  *  L  S  F  N  F  *  F  F  F  Y  G  I  F  R  N  E  L  K  N  I  D  I  *  S  D  Y  D  P  P  L  F  W  H  L  E  I  I  *  S  E  I  Y  N  F  F  K  F  *  H  M  L  A  S  K  Y  F  D  Q  *  L  I  Y  S  F  K  K  N  F  M  R  Y  *  L  N  L  H  V  S  Q  F  V  N  F  L  Y  L  T  K  A  I  N  L  *  T  H  S  N  S  I  C  Y  R  L  F  Q  H  Y  I  *  F  L  F  G  A  F  V  L  S  Y  L  L  C  L  A  R  *  F  S  T  I  Q  L  K  S  Y  G  N  L  *  L  F  L  L  H  Y  G  I  D   </first_frame>
            <second_frame>  L  I  D  N  I  F  *  Y  L  E  V  V  *  E  D  L  C  N  F  L  N  F  L  C  V  N  P  W  *  Y  N  F  H  S  I  F  N  F  F  F  M  E  S  S  V  M  N  *  K  T  *  T  Y  S  L  I  M  I  H  H  F  F  G  I  *  K  S  Y  N  R  K  Y  I  I  F  S  N  F  S  I  C  *  Q  V  N  I  L  I  S  N  *  F  I  L  L  K  K  T  L  *  G  I  N  L  I  Y  T  F  L  N  L  S  I  S  C  I  *  Q  K  Q  *  I  C  K  L  T  A  I  P  F  A  T  V  F  F  S  T  I  S  D  F  Y  L  G  L  L  S  *  V  I  F  F  A  *  Q  G  N  F  Q  Q  F  N  *  N  H  M  G  I  F  D  Y  F  Y  F  I  M  E  L  T  </second_frame>
            <third_frame>   *  S  T  I  Y  F  D  I  *  K  S  F  K  R  I  C  V  I  F  L  I  F  C  V  L  I  H  G  D  I  T  F  I  Q  F  L  I  F  F  L  W  N  L  P  *  *  I  E  K  H  R  H  I  V  *  L  *  S  T  T  F  L  A  F  R  N  H  I  I  G  N  I  *  F  F  Q  I  L  A  Y  V  S  K  *  I  F  *  S  V  I  N  L  F  F  *  K  K  L  Y  E  V  L  T  *  F  T  R  F  S  I  C  Q  F  L  V  F  D  K  S  N  K  S  V  N  S  Q  Q  F  H  L  L  P  S  F  S  A  L  Y  L  I  F  I  W  G  F  C  L  E  L  S  S  L  L  S  K  V  I  F  N  N  S  I  E  I  I  W  E  S  L  I  I  S  T  S  L  W  N  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101211" stop="101432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTRFSICQFLVFDKSNKSVNSQQFHLLPSFSALYLIFIWGFCLELSSLLSKVIFNNSIEIIWESLIISTSLWN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="105068" PGL_stop="105788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105068" e_stop="105788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105068" e_stop="105788" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105068" stop="105568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105398" stop="105788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGATCTCCATCATGCGCACAATTCTGCATGCTCGGGAGTAGTTTTTGGTGGCAAAGTTCATGTCTTGCATAAAGGTTTATCAACTATTCAGGTTTTAGAAAATTTCAAGCAGGGTTGGATTGCTCACGAGTATTCTTGGCTCCAGGGCCCGATGACTGTCGTTAGGGGAAAGCTTTATGTTATGAGCAATTGGTTCATTTATAAGCAGGAAGGAGAATCAAGAAGAATGATAGTTTCAGCATCTGATTTTCGTAGGAGAATCGGTTATGCTATGATAGGGTTGGGAGATGATATTTATATAGTTGGAGGGGTTAATGGACCGGATTACTGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAATGCTACAACGAACATTTGGCACTAAAGTGGCTGCTAGGAATAGCATGAAGTAGACAAGTGAAGAGGAAAAAAGCAAATTGAGATTACTAATGGTGGATGATGTTTGAGGGTAAACATGTTCCATGCCTTGCCTTTGTCTCCTTTGTCGTAGACTGAAAATGATGGAAATCCTATCTGACATGACTTCTATGAGGTGTCTTAGTAGTGATCGACTTTATTTTAT</gDNA_template>
            <first_frame> P  D  L  H  H  A  H  N  S  A  C  S  G  V  V  F  G  G  K  V  H  V  L  H  K  G  L  S  T  I  Q  V  L  E  N  F  K  Q  G  W  I  A  H  E  Y  S  W  L  Q  G  P  M  T  V  V  R  G  K  L  Y  V  M  S  N  W  F  I  Y  K  Q  E  G  E  S  R  R  M  I  V  S  A  S  D  F  R  R  R  I  G  Y  A  M  I  G  L  G  D  D  I  Y  I  V  G  G  V  N  G  P  D  Y  W  N  C  S  V  K  V  L  S  D  V  D  V  L  T  L  G  S  E  R  P  A  W  R  K  V  A  P  L  T  R  C  R  G  T  I  L  G  C  T  Q  L  R  I  *  D  M  H  K  W  G  *  N  S  N  K  C  Y  N  E  H  L  A  L  K  W  L  L  G  I  A  *  S  R  Q  V  K  R  K  K  A  N  *  D  Y  *  W  W  M  M  F  E  G  K  H  V  P  C  L  A  F  V  S  F  V  V  D  *  K  *  W  K  S  Y  L  T  *  L  L  *  G  V  L  V  V  I  D  F  I  L  </first_frame>
            <second_frame>  L  I  S  I  M  R  T  I  L  H  A  R  E  *  F  L  V  A  K  F  M  S  C  I  K  V  Y  Q  L  F  R  F  *  K  I  S  S  R  V  G  L  L  T  S  I  L  G  S  R  A  R  *  L  S  L  G  E  S  F  M  L  *  A  I  G  S  F  I  S  R  K  E  N  Q  E  E  *  *  F  Q  H  L  I  F  V  G  E  S  V  M  L  *  *  G  W  E  M  I  F  I  *  L  E  G  L  M  D  R  I  T  G  I  V  A  *  K  C  Y  L  M  L  M  S  *  P  L  E  V  R  G  Q  H  G  V  R  L  L  H  *  Q  G  A  E  G  Q  S  L  A  A  H  S  *  E  F  K  T  C  I  N  G  D  E  I  Q  I  N  A  T  T  N  I  W  H  *  S  G  C  *  E  *  H  E  V  D  K  *  R  G  K  K  Q  I  E  I  T  N  G  G  *  C  L  R  V  N  M  F  H  A  L  P  L  S  P  L  S  *  T  E  N  D  G  N  P  I  *  H  D  F  Y  E  V  S  *  *  *  S  T  L  F  Y </second_frame>
            <third_frame>   *  S  P  S  C  A  Q  F  C  M  L  G  S  S  F  W  W  Q  S  S  C  L  A  *  R  F  I  N  Y  S  G  F  R  K  F  Q  A  G  L  D  C  S  R  V  F  L  A  P  G  P  D  D  C  R  *  G  K  A  L  C  Y  E  Q  L  V  H  L  *  A  G  R  R  I  K  K  N  D  S  F  S  I  *  F  S  *  E  N  R  L  C  Y  D  R  V  G  R  *  Y  L  Y  S  W  R  G  *  W  T  G  L  L  E  L  *  R  E  S  A  I  *  C  *  C  L  D  P  W  K  *  E  A  S  M  A  *  G  C  S  I  D  K  V  Q  R  D  N  P  W  L  H  T  A  E  N  L  R  H  A  *  M  G  M  K  F  K  *  M  L  Q  R  T  F  G  T  K  V  A  A  R  N  S  M  K  *  T  S  E  E  E  K  S  K  L  R  L  L  M  V  D  D  V  *  G  *  T  C  S  M  P  C  L  C  L  L  C  R  R  L  K  M  M  E  I  L  S  D  M  T  S  M  R  C  L  S  S  D  R  L  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105068" stop="105532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDLHHAHNSACSGVVFGGKVHVLHKGLSTIQVLENFKQGWIAHEYSWLQGPMTVVRGKLYVMSNWFIYKQEGESRRMIVSASDFRRRIGYAMIGLGDDIYIVGGVNGPDYWNCSVKVLSDVDVLTLGSERPAWRKVAPLTRCRGTILGCTQLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="106655" PGL_stop="111146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106655" e_stop="106791"/>
            <exon e_start="107816" e_stop="107980"/>
            <exon e_start="108316" e_stop="108496"/>
            <exon e_start="108981" e_stop="109037"/>
            <exon e_start="109131" e_stop="109184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.927"/>
          <exon-intron don_prob="0.809" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="106655" e_stop="106791" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="106792" i_stop="107815" i_length="1024"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107816" e_stop="107980" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.809" acc_prob="0.820">
            <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108316" e_stop="108496" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108981" e_stop="109037" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109131" e_stop="109184" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106655" stop="106791"/>
              <exon start="107816" stop="107980"/>
              <exon start="108316" stop="108496"/>
              <exon start="108981" stop="109037"/>
              <exon start="109131" stop="109184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATGGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCA : AGAAGGTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT : GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG : GAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGA : GTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTT</gDNA_template>
            <first_frame> T  M  E  E  T  N  M  D  D  C  E  H  N  R  E  S  E  V  A  P  A  L  I  A  V  H  P  T  Q  K  S  V  A  V  A  V  G  S  N  L  R  V  F  N  L  Q :   E  G  C  S  V  S  L  V  D  N  S  G  V  H  M  H  K  D  S  I  R  A  I  Q  Y  G  A  E  G  K  L  F  V  S  A  G  D  D  K  L  V  K  I  W  V  T  D  S  W  R  C  I  S  S  V :   S  S  E  K  R  V  T  A  V  A  I  S  N  D  G  R  F  V  S  F  A  D  K  F  G  V  I  Y  A  V  E  I  E  G  S  H  E  N  Q  S  V  P  N  K  K  A  V  P  I  L  A  H  Y  C  S  I  I  T  S  L  :  E  F  S  P  D  G  R  Y  I  I  S  A  D  R  D  F  K  I  R  :  V  S  V  F  P  E  K  P  S  D  G  A  H  E  I  Q  S  F </first_frame>
            <second_frame>  Q  W  R  K  L  T  W  M  I  V  N  T  T  V  N  L  R  L  L  R  R  *  L  Q  F  I  Q  L  R  N  P  S  P  L  P  S  V  R  I  S  A  S  L  I  F   : K  K  V  V  R  F  H  W  W  I  I  Q  E  C  T  C  I  R  I  Q  *  E  Q  F  N  M  V  L  K  E  S  C  L  Y  L  L  A  M  T  N  L  L  R  F  G  L  L  I  L  G  G  A  *  V  R   : C  H  P  R  R  E  L  L  L  L  P  S  V  M  M  G  V  L  Y  P  S  R  I  N  L  V  *  F  M  Q  L  K  *  K  V  L  M  K  I  K  V  C  P  I  R  R  Q  S  Q  F  S  P  T  T  A  A  S  L  L  V  W :   S  F  H  Q  M  D  V  T  L  L  V  P  I  G  T  S  K  S  E :   S  L  C  S  Q  K  S  H  Q  M  G  L  M  R  F  K  V   </second_frame>
            <third_frame>   N  G  G  N  *  H  G  *  L  *  T  Q  P  *  I  *  G  C  S  G  V  N  C  S  S  S  N  S  E  I  R  R  R  C  R  R  F  E  S  P  R  L  *  S  S  :  R  R  L  F  G  F  I  G  G  *  F  R  S  A  H  A  *  G  F  N  K  S  N  S  I  W  C  *  R  K  A  V  C  I  C  W  R  *  Q  T  C  *  D  L  G  Y  *  F  L  A  V  H  K  F  G  :  V  I  R  E  E  S  Y  C  C  C  H  Q  *  *  W  A  F  C  I  L  R  G  *  I  W  C  N  L  C  S  *  N  R  R  F  S  *  K  S  K  C  A  Q  *  E  G  S  P  N  S  R  P  L  L  Q  H  H  Y  *  S   : G  V  F  T  R  W  T  L  H  Y  *  C  R  S  G  L  Q  N  P   : S  L  C  V  P  R  K  A  I  R  W  G  S  *  D  S  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106655" stop="106791"/>
                    <exon start="107816" stop="107980"/>
                    <exon start="108316" stop="108496"/>
                    <exon start="108981" stop="109037"/>
                    <exon start="109131" stop="109184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEETNMDDCEHNRESEVAPALIAVHPTQKSVAVAVGSNLRVFNLQEGCSVSLVDNSGVHMHKDSIRAIQYGAEGKLFVSAGDDKLVKIWVTDSWRCISSVSSEKRVTAVAISNDGRFVSFADKFGVIYAVEIEGSHENQSVPNKKAVPILAHYCSIITSLEFSPDGRYIISADRDFKIRVSVFPEKPSDGAHEIQSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109723" e_stop="110061"/>
            <exon e_start="110540" e_stop="110596"/>
            <exon e_start="110890" e_stop="110993"/>
            <exon e_start="111092" e_stop="111146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.926" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="109723" e_stop="110061" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110540" e_stop="110596" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.948">
            <gDNA_intron_boundary i_start="110597" i_stop="110889" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110890" e_stop="110993" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="110994" i_stop="111091" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111092" e_stop="111146" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109723" stop="110061"/>
              <exon start="110540" stop="110596"/>
              <exon start="110890" stop="110993"/>
              <exon start="111092" stop="111146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTGTTTCTCTTTCGGTACCTGTGTTGACGACCTTCTTTCGTTTTTAAAAGTGCATTTTATTGCCTTCCAGCAATTCTATTCATCCTCCCCTCCCCTCCCCCCTCAAAAAAAAAATAATCAAAGGATAAATAAAAGATAGATGAAAATAGTTGTTGAGTATTGAACTTCGGCATACATTTCCACAGGAAGAAATTCTAGTTTTGACAATGCTTACTGGTTATCATGGTCATGGCTCATTTATTGTCTCAATTGTCAGGTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACT : GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAG : ACAGGACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAG : CTTGGCAGGCGTCATGCTTTTGAGTTGCAACCTTTCAGCTAAATCTCTCCATGTT</gDNA_template>
            <first_frame> I  C  V  S  L  S  V  P  V  L  T  T  F  F  R  F  *  K  C  I  L  L  P  S  S  N  S  I  H  P  P  L  P  S  P  L  K  K  K  I  I  K  G  *  I  K  D  R  *  K  *  L  L  S  I  E  L  R  H  T  F  P  Q  E  E  I  L  V  L  T  M  L  T  G  Y  H  G  H  G  S  F  I  V  S  I  V  R  F  V  S  C  L  A  F  I  C  N  Q  D  S  Q  Q  W  Y  L  L  S  G  G  G  D  S  T  :  V  R  L  W  D  F  T  C  G  S  L  L  D  T  C  H  V  G  E  :  T  G  L  L  Q  S  K  E  G  I  D  D  R  L  L  A  V  T  D  L  C  A  T  P  W  G  S  L  I  A  V  A  I  Q  S :   L  A  G  V  M  L  L  S  C  N  L  S  A  K  S  L  H  V </first_frame>
            <second_frame>  S  V  F  L  F  R  Y  L  C  *  R  P  S  F  V  F  K  S  A  F  Y  C  L  P  A  I  L  F  I  L  P  S  P  P  P  S  K  K  K  *  S  K  D  K  *  K  I  D  E  N  S  C  *  V  L  N  F  G  I  H  F  H  R  K  K  F  *  F  *  Q  C  L  L  V  I  M  V  M  A  H  L  L  S  Q  L  S  G  L  F  P  A  L  P  S  S  A  T  R  I  P  S  S  G  I  C  F  Q  E  V  V  I  Q  L :   Y  A  C  G  T  S  L  V  V  L  F  L  I  P  V  M  L  E  R :   Q  D  Y  Y  S  Q  K  K  E  *  M  T  G  C  W  L  S  L  I  F  V  P  L  L  G  D  L  *  S  R  W  L  F  R   : A  W  Q  A  S  C  F  *  V  A  T  F  Q  L  N  L  S  M   </second_frame>
            <third_frame>   L  C  F  S  F  G  T  C  V  D  D  L  L  S  F  L  K  V  H  F  I  A  F  Q  Q  F  Y  S  S  S  P  P  L  P  P  Q  K  K  N  N  Q  R  I  N  K  R  *  M  K  I  V  V  E  Y  *  T  S  A  Y  I  S  T  G  R  N  S  S  F  D  N  A  Y  W  L  S  W  S  W  L  I  Y  C  L  N  C  Q  V  C  F  L  P  C  L  H  L  Q  P  G  F  P  A  V  V  F  A  F  R  R  W  *  F  N   : C  T  L  V  G  L  H  L  W  F  S  S  *  Y  L  S  C  W  R   : D  R  T  I  T  V  K  R  R  N  R  *  Q  V  A  G  C  H  *  S  L  C  H  S  L  G  I  S  N  R  G  G  Y  S  E  :  L  G  R  R  H  A  F  E  L  Q  P  F  S  *  I  S  P  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109876" stop="110061"/>
                    <exon start="110540" stop="110596"/>
                    <exon start="110890" stop="110993"/>
                    <exon start="111092" stop="111146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSIELRHTFPQEEILVLTMLTGYHGHGSFIVSIVRFVSCLAFICNQDSQQWYLLSGGGDSTVRLWDFTCGSLLDTCHVGETGLLQSKEGIDDRLLAVTDLCATPWGSLIAVAIQSLAGVMLLSCNLSAKSLHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="106660" e_stop="106791"/>
            <exon e_start="107821" e_stop="107980"/>
            <exon e_start="108316" e_stop="108496"/>
            <exon e_start="108981" e_stop="109037"/>
            <exon e_start="109131" e_stop="109201"/>
            <exon e_start="109983" e_stop="110061"/>
            <exon e_start="110540" e_stop="110596"/>
            <exon e_start="110894" e_stop="110993"/>
            <exon e_start="111092" e_stop="111120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.809" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="106660" e_stop="106791" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106792" i_stop="107820" i_length="1029"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107821" e_stop="107980" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.809" acc_prob="0.820">
            <gDNA_intron_boundary i_start="107981" i_stop="108315" i_length="335"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108316" e_stop="108496" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="108497" i_stop="108980" i_length="484"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108981" e_stop="109037" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109038" i_stop="109130" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109131" e_stop="109201" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109202" i_stop="109982" i_length="781"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109983" e_stop="110061" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="110062" i_stop="110539" i_length="478"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="110540" e_stop="110596" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.929">
            <gDNA_intron_boundary i_start="110597" i_stop="110893" i_length="297"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="110894" e_stop="110993" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="110994" i_stop="111091" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111092" e_stop="111120" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106660" stop="106791"/>
              <exon start="107821" stop="107980"/>
              <exon start="108316" stop="108496"/>
              <exon start="108981" stop="109037"/>
              <exon start="109131" stop="109201"/>
              <exon start="109983" stop="110061"/>
              <exon start="110540" stop="110596"/>
              <exon start="110894" stop="110993"/>
              <exon start="111092" stop="111120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGAAACTAACATGGATGATTGTGAACACAACCGTGAATCTGAGGTTGCTCCGGCGTTAATTGCAGTTCATCCAACTCAGAAATCCGTCGCCGTTGCCGTCGGTTCGAATCTCCGCGTCTTTAATCTTCA : GTTGTTCGGTTTCATTGGTGGATAATTCAGGAGTGCACATGCATAAGGATTCAATAAGAGCAATTCAATATGGTGCTGAAGGAAAGCTGTTTGTATCTGCTGGCGATGACAAACTTGTTAAGATTTGGGTTACTGATTCTTGGCGGTGCATAAGTTCGGT : GTCATCCGAGAAGAGAGTTACTGCTGTTGCCATCAGTAATGATGGGCGTTTTGTATCCTTCGCGGATAAATTTGGTGTAATTTATGCAGTTGAAATAGAAGGTTCTCATGAAAATCAAAGTGTGCCCAATAAGAAGGCAGTCCCAATTCTCGCCCACTACTGCAGCATCATTACTAGTCTG : GAGTTTTCACCAGATGGACGTTACATTATTAGTGCCGATCGGGACTTCAAAATCCGA : GTCTCTGTGTTCCCAGAAAAGCCATCAGATGGGGCTCATGAGATTCAAAGTTTTTGCCTTGGCCATTCAGA : GTTTGTTTCCTGCCTTGCCTTCATCTGCAACCAGGATTCCCAGCAGTGGTATTTGCTTTCAGGAGGTGGTGATTCAACT : GTACGCTTGTGGGACTTCACTTGTGGTTCTCTTCTTGATACCTGTCATGTTGGAGAG : GACTATTACAGTCAAAAGAAGGAATAGATGACAGGTTGCTGGCTGTCACTGATCTTTGTGCCACTCCTTGGGGATCTCTAATCGCGGTGGCTATTCAGAG : CTTGGCAGGCGTCATGCTTTTGAGTTGCA</gDNA_template>
            <first_frame> G  G  N  *  H  G  *  L  *  T  Q  P  *  I  *  G  C  S  G  V  N  C  S  S  S  N  S  E  I  R  R  R  C  R  R  F  E  S  P  R  L  *  S  S  :  V  V  R  F  H  W  W  I  I  Q  E  C  T  C  I  R  I  Q  *  E  Q  F  N  M  V  L  K  E  S  C  L  Y  L  L  A  M  T  N  L  L  R  F  G  L  L  I  L  G  G  A  *  V  R   : C  H  P  R  R  E  L  L  L  L  P  S  V  M  M  G  V  L  Y  P  S  R  I  N  L  V  *  F  M  Q  L  K  *  K  V  L  M  K  I  K  V  C  P  I  R  R  Q  S  Q  F  S  P  T  T  A  A  S  L  L  V  W :   S  F  H  Q  M  D  V  T  L  L  V  P  I  G  T  S  K  S  E :   S  L  C  S  Q  K  S  H  Q  M  G  L  M  R  F  K  V  F  A  L  A  I  Q   : S  L  F  P  A  L  P  S  S  A  T  R  I  P  S  S  G  I  C  F  Q  E  V  V  I  Q  L :   Y  A  C  G  T  S  L  V  V  L  F  L  I  P  V  M  L  E  R :   T  I  T  V  K  R  R  N  R  *  Q  V  A  G  C  H  *  S  L  C  H  S  L  G  I  S  N  R  G  G  Y  S  E  :  L  G  R  R  H  A  F  E  L   </first_frame>
            <second_frame>  E  E  T  N  M  D  D  C  E  H  N  R  E  S  E  V  A  P  A  L  I  A  V  H  P  T  Q  K  S  V  A  V  A  V  G  S  N  L  R  V  F  N  L  Q :   L  F  G  F  I  G  G  *  F  R  S  A  H  A  *  G  F  N  K  S  N  S  I  W  C  *  R  K  A  V  C  I  C  W  R  *  Q  T  C  *  D  L  G  Y  *  F  L  A  V  H  K  F  G  :  V  I  R  E  E  S  Y  C  C  C  H  Q  *  *  W  A  F  C  I  L  R  G  *  I  W  C  N  L  C  S  *  N  R  R  F  S  *  K  S  K  C  A  Q  *  E  G  S  P  N  S  R  P  L  L  Q  H  H  Y  *  S   : G  V  F  T  R  W  T  L  H  Y  *  C  R  S  G  L  Q  N  P   : S  L  C  V  P  R  K  A  I  R  W  G  S  *  D  S  K  F  L  P  W  P  F  R  :  V  C  F  L  P  C  L  H  L  Q  P  G  F  P  A  V  V  F  A  F  R  R  W  *  F  N   : C  T  L  V  G  L  H  L  W  F  S  S  *  Y  L  S  C  W  R   : G  L  L  Q  S  K  E  G  I  D  D  R  L  L  A  V  T  D  L  C  A  T  P  W  G  S  L  I  A  V  A  I  Q  S :   L  A  G  V  M  L  L  S  C  </second_frame>
            <third_frame>   R  K  L  T  W  M  I  V  N  T  T  V  N  L  R  L  L  R  R  *  L  Q  F  I  Q  L  R  N  P  S  P  L  P  S  V  R  I  S  A  S  L  I  F   : S  C  S  V  S  L  V  D  N  S  G  V  H  M  H  K  D  S  I  R  A  I  Q  Y  G  A  E  G  K  L  F  V  S  A  G  D  D  K  L  V  K  I  W  V  T  D  S  W  R  C  I  S  S  V :   S  S  E  K  R  V  T  A  V  A  I  S  N  D  G  R  F  V  S  F  A  D  K  F  G  V  I  Y  A  V  E  I  E  G  S  H  E  N  Q  S  V  P  N  K  K  A  V  P  I  L  A  H  Y  C  S  I  I  T  S  L  :  E  F  S  P  D  G  R  Y  I  I  S  A  D  R  D  F  K  I  R  :  V  S  V  F  P  E  K  P  S  D  G  A  H  E  I  Q  S  F  C  L  G  H  S  E :   F  V  S  C  L  A  F  I  C  N  Q  D  S  Q  Q  W  Y  L  L  S  G  G  G  D  S  T  :  V  R  L  W  D  F  T  C  G  S  L  L  D  T  C  H  V  G  E  :  D  Y  Y  S  Q  K  K  E  *  M  T  G  C  W  L  S  L  I  F  V  P  L  L  G  D  L  *  S  R  W  L  F  R   : A  W  Q  A  S  C  F  *  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106722" stop="106791"/>
                    <exon start="107821" stop="107980"/>
                    <exon start="108316" stop="108496"/>
                    <exon start="108981" stop="109037"/>
                    <exon start="109131" stop="109201"/>
                    <exon start="109983" stop="110061"/>
                    <exon start="110540" stop="110596"/>
                    <exon start="110894" stop="110920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFIQLRNPSPLPSVRISASLIFSCSVSLVDNSGVHMHKDSIRAIQYGAEGKLFVSAGDDKLVKIWVTDSWRCISSVSSEKRVTAVAISNDGRFVSFADKFGVIYAVEIEGSHENQSVPNKKAVPILAHYCSIITSLEFSPDGRYIISADRDFKIRVSVFPEKPSDGAHEIQSFCLGHSEFVSCLAFICNQDSQQWYLLSGGGDSTVRLWDFTCGSLLDTCHVGEDYYSQKKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="111509" PGL_stop="112250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111509" e_stop="112250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="112250" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111509" stop="112250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTTCCGATTCCTGGGGAGACTTTTATTCCCACAAGCTTAGCAGCTGCCTCTTCATCGAATCAGTTGTGGATGGTCATGGGTGCATCGACTCTATGTACTTCCCATTCAGCACCTTTGGCTTGTGTGAAGGTTCTCAATGGTTTCTGCGAGAGCAACCAGGACTCTGTTGAGCACGAGGCACGTGTTTTAGAAGATAAAGATTTACCAGGTAGTGAACAACTCCTTCAAACGTTGCAGGGGAGTTCGTTCATTGAGAAAGATGCACTATCAGCGGCTGCAGAAGCAGTGAAAACTGCAATGTGTAATCTATTAATCAAGAAGCAGTACCCTTCTGAAAATCGAGAGTTTAGAAAGAGAGGGAGGAACGACAAGAGAGTAGATAAGAAAAAATGAGATCGGTGGACAAAGTTACATGGTATGTATGCTGGTGGGAGGTTATCAGAGTATTTATAGGCCGAGTTGATTTTGCTGCCAGCAGTGAGCAAGGTAGTGGCTTTCCAGCTCGAGCTCGTAAACAGTTCTGCTGATGAAAGAAATCAAATTTCGCCTTTGCTGTGAAGTAGTTTTTTTTCTGCTTTTAATAACGATTTGTGATATGATATGGTATTGTTTACAAATTTTCACCCTCATTATAACTTGTTTTAATTGTTTACCTTGCATTAGTTCTGGTGCTTACTGTAGCTTATTTTTATGCTTTTGATATTGCCATAATTTAAAAGCCTTCATCTGTTTTGGTCCA</gDNA_template>
            <first_frame> V  V  P  I  P  G  E  T  F  I  P  T  S  L  A  A  A  S  S  S  N  Q  L  W  M  V  M  G  A  S  T  L  C  T  S  H  S  A  P  L  A  C  V  K  V  L  N  G  F  C  E  S  N  Q  D  S  V  E  H  E  A  R  V  L  E  D  K  D  L  P  G  S  E  Q  L  L  Q  T  L  Q  G  S  S  F  I  E  K  D  A  L  S  A  A  A  E  A  V  K  T  A  M  C  N  L  L  I  K  K  Q  Y  P  S  E  N  R  E  F  R  K  R  G  R  N  D  K  R  V  D  K  K  K  *  D  R  W  T  K  L  H  G  M  Y  A  G  G  R  L  S  E  Y  L  *  A  E  L  I  L  L  P  A  V  S  K  V  V  A  F  Q  L  E  L  V  N  S  S  A  D  E  R  N  Q  I  S  P  L  L  *  S  S  F  F  S  A  F  N  N  D  L  *  Y  D  M  V  L  F  T  N  F  H  P  H  Y  N  L  F  *  L  F  T  L  H  *  F  W  C  L  L  *  L  I  F  M  L  L  I  L  P  *  F  K  S  L  H  L  F  W  S  </first_frame>
            <second_frame>  W  F  R  F  L  G  R  L  L  F  P  Q  A  *  Q  L  P  L  H  R  I  S  C  G  W  S  W  V  H  R  L  Y  V  L  P  I  Q  H  L  W  L  V  *  R  F  S  M  V  S  A  R  A  T  R  T  L  L  S  T  R  H  V  F  *  K  I  K  I  Y  Q  V  V  N  N  S  F  K  R  C  R  G  V  R  S  L  R  K  M  H  Y  Q  R  L  Q  K  Q  *  K  L  Q  C  V  I  Y  *  S  R  S  S  T  L  L  K  I  E  S  L  E  R  E  G  G  T  T  R  E  *  I  R  K  N  E  I  G  G  Q  S  Y  M  V  C  M  L  V  G  G  Y  Q  S  I  Y  R  P  S  *  F  C  C  Q  Q  *  A  R  *  W  L  S  S  S  S  S  *  T  V  L  L  M  K  E  I  K  F  R  L  C  C  E  V  V  F  F  L  L  L  I  T  I  C  D  M  I  W  Y  C  L  Q  I  F  T  L  I  I  T  C  F  N  C  L  P  C  I  S  S  G  A  Y  C  S  L  F  L  C  F  *  Y  C  H  N  L  K  A  F  I  C  F  G  P </second_frame>
            <third_frame>   G  S  D  S  W  G  D  F  Y  S  H  K  L  S  S  C  L  F  I  E  S  V  V  D  G  H  G  C  I  D  S  M  Y  F  P  F  S  T  F  G  L  C  E  G  S  Q  W  F  L  R  E  Q  P  G  L  C  *  A  R  G  T  C  F  R  R  *  R  F  T  R  *  *  T  T  P  S  N  V  A  G  E  F  V  H  *  E  R  C  T  I  S  G  C  R  S  S  E  N  C  N  V  *  S  I  N  Q  E  A  V  P  F  *  K  S  R  V  *  K  E  R  E  E  R  Q  E  S  R  *  E  K  M  R  S  V  D  K  V  T  W  Y  V  C  W  W  E  V  I  R  V  F  I  G  R  V  D  F  A  A  S  S  E  Q  G  S  G  F  P  A  R  A  R  K  Q  F  C  *  *  K  K  S  N  F  A  F  A  V  K  *  F  F  F  C  F  *  *  R  F  V  I  *  Y  G  I  V  Y  K  F  S  P  S  L  *  L  V  L  I  V  Y  L  A  L  V  L  V  L  T  V  A  Y  F  Y  A  F  D  I  A  I  I  *  K  P  S  S  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111509" stop="111904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVPIPGETFIPTSLAAASSSNQLWMVMGASTLCTSHSAPLACVKVLNGFCESNQDSVEHEARVLEDKDLPGSEQLLQTLQGSSFIEKDALSAAAEAVKTAMCNLLIKKQYPSENREFRKRGRNDKRVDKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="112092" PGL_stop="111634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112092" e_stop="111634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112092" e_stop="111634" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112092" stop="111634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAAGCAGAAAAAAAACTACTTCACAGCAAAGGCGAAATTTGATTTCTTTCATCAGCAGAACTGTTTACGAGCTCGAGCTGGAAAGCCACTACCTTGCTCACTGCTGGCAGCAAAATCAACTCGGCCTATAAATACTCTGATAACCTCCCACCAGCATACATACCATGTAACTTTGTCCACCGATCTCATTTTTTCTTATCTACTCTCTTGTCGTTCCTCCCTCTCTTTCTAAACTCTCGATTTTCAGAAGGGTACTGCTTCTTGATTAATAGATTACACATTGCAGTTTTCACTGCTTCTGCAGCCGCTGATAGTGCATCTTTCTCAATGAACGAACTCCCCTGCAACGTTTGAAGGAGTTGTTCACTACCTGGTAAATCTTTATCTTCTAAAACACGTGCCTCGTGCTCAACAGAGTCCTGGTTGCTCTCGCAGAAACCATTGAGAACCTTCACA</gDNA_template>
            <first_frame> L  K  A  E  K  K  L  L  H  S  K  G  E  I  *  F  L  S  S  A  E  L  F  T  S  S  S  W  K  A  T  T  L  L  T  A  G  S  K  I  N  S  A  Y  K  Y  S  D  N  L  P  P  A  Y  I  P  C  N  F  V  H  R  S  H  F  F  L  S  T  L  L  S  F  L  P  L  F  L  N  S  R  F  S  E  G  Y  C  F  L  I  N  R  L  H  I  A  V  F  T  A  S  A  A  A  D  S  A  S  F  S  M  N  E  L  P  C  N  V  *  R  S  C  S  L  P  G  K  S  L  S  S  K  T  R  A  S  C  S  T  E  S  W  L  L  S  Q  K  P  L  R  T  F  T </first_frame>
            <second_frame>  *  K  Q  K  K  N  Y  F  T  A  K  A  K  F  D  F  F  H  Q  Q  N  C  L  R  A  R  A  G  K  P  L  P  C  S  L  L  A  A  K  S  T  R  P  I  N  T  L  I  T  S  H  Q  H  T  Y  H  V  T  L  S  T  D  L  I  F  S  Y  L  L  S  C  R  S  S  L  S  F  *  T  L  D  F  Q  K  G  T  A  S  *  L  I  D  Y  T  L  Q  F  S  L  L  L  Q  P  L  I  V  H  L  S  Q  *  T  N  S  P  A  T  F  E  G  V  V  H  Y  L  V  N  L  Y  L  L  K  H  V  P  R  A  Q  Q  S  P  G  C  S  R  R  N  H  *  E  P  S   </second_frame>
            <third_frame>   K  S  R  K  K  T  T  S  Q  Q  R  R  N  L  I  S  F  I  S  R  T  V  Y  E  L  E  L  E  S  H  Y  L  A  H  C  W  Q  Q  N  Q  L  G  L  *  I  L  *  *  P  P  T  S  I  H  T  M  *  L  C  P  P  I  S  F  F  L  I  Y  S  L  V  V  P  P  S  L  S  K  L  S  I  F  R  R  V  L  L  L  D  *  *  I  T  H  C  S  F  H  C  F  C  S  R  *  *  C  I  F  L  N  E  R  T  P  L  Q  R  L  K  E  L  F  T  T  W  *  I  F  I  F  *  N  T  C  L  V  L  N  R  V  L  V  A  L  A  E  T  I  E  N  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112047" stop="111736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSSAELFTSSSWKATTLLTAGSKINSAYKYSDNLPPAYIPCNFVHRSHFFLSTLLSFLPLFLNSRFSEGYCFLINRLHIAVFTASAAADSASFSMNELPCNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112088" stop="111858"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKKNYFTAKAKFDFFHQQNCLRARAGKPLPCSLLAAKSTRPINTLITSHQHTYHVTLSTDLIFSYLLSCRSSLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="121397" PGL_stop="122727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121397" e_stop="121497"/>
            <exon e_start="121580" e_stop="121823"/>
            <exon e_start="122223" e_stop="122727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.000" e_score="0.970"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="121397" e_stop="121497" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121498" i_stop="121579" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121580" e_stop="121823" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121824" i_stop="122222" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="122223" e_stop="122727" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121397" stop="121497"/>
              <exon start="121580" stop="121823"/>
              <exon start="122223" stop="122727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121397" stop="121497"/>
              <exon start="121580" stop="121823"/>
              <exon start="122223" stop="122629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTTCAGTGTATGCATCAATTGGAACTGCAAATCGGCTCTCTGCATTCCTTGCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAG : GTTGTAGGTATGGAACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTG : GATGTGGGAAGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGGTATTTTGGACTGCCTAGGATTTATTGTGTATTACCTAACTGCGTTGGAGCTCTACCATCAGGTTGTTGATTAAAATTGGAAATCAATATGTCAGGAACCTGATTTTCATTGTTCCCTGTTAGATTGACTACATAAGGCTAACTTAAGATTTTCTAACTTATACAATGCGACTCAGCCCTCAATTATTTGTCTTTTCCTCTACCTTAATGTCCTGCCTTGTAGGAATAACTTTTTGTAATTGAGAACATACAATAGAGAATTGATCACAGGTTTCATGAGAATAAATTACATATGAAAATCTTCACGTTTAAGTAATTACTTGTTATTATGATTCTCATCTATATTTCATGATTGTCTTTAAA</gDNA_template>
            <first_frame> I  F  S  V  Y  A  S  I  G  T  A  N  R  L  S  A  F  L  A  V  R  R  S  K  M  M  V  Q  T  L  Y  I  S  R :   L  *  V  W  N  L  L  K  N  L  F  *  K  S  T  V  L  E  P  P  L  Y  L  E  G  M  Y  L  L  L  F  L  Q  I  S  *  F  L  G  H  K  V  P  C  L  Y  K  *  A  R  *  R  L  *  P  P  Y  L  Y  H  H  Y  V  H  Q  P  F  H  Q  N  F  G  L  L  C  C  C  M  A  *  L  :  D  V  G  R  E  L  W  L  N  L  L  L  V  S  *  A  S  M  *  W  N  T  I  V  R  A  Y  L  Q  I  L  I  E  K  H  L  L  P  L  L  K  P  S  A  W  L  A  G  I  L  D  C  L  G  F  I  V  Y  Y  L  T  A  L  E  L  Y  H  Q  V  V  D  *  N  W  K  S  I  C  Q  E  P  D  F  H  C  S  L  L  D  *  L  H  K  A  N  L  R  F  S  N  L  Y  N  A  T  Q  P  S  I  I  C  L  F  L  Y  L  N  V  L  P  C  R  N  N  F  L  *  L  R  T  Y  N  R  E  L  I  T  G  F  M  R  I  N  Y  I  *  K  S  S  R  L  S  N  Y  L  L  L  *  F  S  S  I  F  H  D  C  L  *  </first_frame>
            <second_frame>  S  F  Q  C  M  H  Q  L  E  L  Q  I  G  S  L  H  S  L  Q  S  E  E  A  K  *  W  F  R  P  Y  I  F  Q   : G  C  R  Y  G  T  F  *  R  T  C  S  K  S  Q  P  Y  S  N  R  P  C  T  W  R  E  C  T  F  C  C  S  S  R  F  L  D  S  S  A  T  R  F  P  A  F  T  S  E  H  G  E  D  F  S  L  H  T  Y  T  T  I  M  S  I  S  P  F  I  K  I  S  G  C  C  V  V  A  W  L  D  W :   M  W  E  E  N  C  G  *  I  C  C  S  S  V  R  P  P  C  S  G  I  Q  L  S  E  H  I  C  K  F  *  *  K  N  I  C  C  P  C  *  S  L  Q  H  G  S  Q  V  F  W  T  A  *  D  L  L  C  I  T  *  L  R  W  S  S  T  I  R  L  L  I  K  I  G  N  Q  Y  V  R  N  L  I  F  I  V  P  C  *  I  D  Y  I  R  L  T  *  D  F  L  T  Y  T  M  R  L  S  P  Q  L  F  V  F  S  S  T  L  M  S  C  L  V  G  I  T  F  C  N  *  E  H  T  I  E  N  *  S  Q  V  S  *  E  *  I  T  Y  E  N  L  H  V  *  V  I  T  C  Y  Y  D  S  H  L  Y  F  M  I  V  F  K </second_frame>
            <third_frame>   L  F  S  V  C  I  N  W  N  C  K  S  A  L  C  I  P  C  S  Q  K  K  Q  N  D  G  S  D  L  I  Y  F  K  :  V  V  G  M  E  P  S  E  E  P  V  L  K  V  N  R  T  R  T  A  L  V  L  G  G  N  V  P  S  A  V  P  P  D  F  L  I  P  R  P  Q  G  S  L  P  L  Q  V  S  T  V  K  T  L  A  S  I  L  I  P  P  L  C  P  S  A  L  S  S  K  F  R  V  V  V  L  L  H  G  L  T   : G  C  G  K  R  T  V  V  K  F  V  A  R  Q  L  G  L  H  V  V  E  Y  N  C  Q  S  I  F  A  N  S  D  R  K  T  S  A  A  L  A  E  A  F  S  M  A  R  R  Y  F  G  L  P  R  I  Y  C  V  L  P  N  C  V  G  A  L  P  S  G  C  *  L  K  L  E  I  N  M  S  G  T  *  F  S  L  F  P  V  R  L  T  T  *  G  *  L  K  I  F  *  L  I  Q  C  D  S  A  L  N  Y  L  S  F  P  L  P  *  C  P  A  L  *  E  *  L  F  V  I  E  N  I  Q  *  R  I  D  H  R  F  H  E  N  K  L  H  M  K  I  F  T  F  K  *  L  L  V  I  M  I  L  I  Y  I  S  *  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121399" stop="121497"/>
                    <exon start="121580" stop="121823"/>
                    <exon start="122223" stop="122434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSVCINWNCKSALCIPCSQKKQNDGSDLIYFKVVGMEPSEEPVLKVNRTRTALVLGGNVPSAVPPDFLIPRPQGSLPLQVSTVKTLASILIPPLCPSALSSKFRVVVLLHGLTGCGKRTVVKFVARQLGLHVVEYNCQSIFANSDRKTSAALAEAFSMARRYFGLPRIYCVLPNCVGALPSGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="134395" PGL_stop="142742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137609" e_stop="137925"/>
            <exon e_start="138043" e_stop="138191"/>
            <exon e_start="139507" e_stop="139667"/>
            <exon e_start="140345" e_stop="140445"/>
            <exon e_start="140813" e_stop="141430"/>
            <exon e_start="141510" e_stop="141665"/>
            <exon e_start="141748" e_stop="141802"/>
            <exon e_start="142527" e_stop="142742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="0.940" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.608" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.960"/>
          <exon-intron don_prob="0.984" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.484" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.595" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="137609" e_stop="137925" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.981">
            <gDNA_intron_boundary i_start="137926" i_stop="138042" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="138043" e_stop="138191" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.992">
            <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="139507" e_stop="139667" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.608" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139668" i_stop="140344" i_length="677"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="140345" e_stop="140445" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="140446" i_stop="140812" i_length="367"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140813" e_stop="141430" e_length="618"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.810">
            <gDNA_intron_boundary i_start="141431" i_stop="141509" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="141510" e_stop="141665" e_length="156"/>
          </exon>
          <intron i_serial="6" don_prob="0.484" acc_prob="0.982">
            <gDNA_intron_boundary i_start="141666" i_stop="141747" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="141748" e_stop="141802" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.595">
            <gDNA_intron_boundary i_start="141803" i_stop="142526" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="142527" e_stop="142742" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137609" stop="137925"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139667"/>
              <exon start="140345" stop="140445"/>
              <exon start="140813" stop="140841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137610" stop="137925"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140831" stop="141430"/>
              <exon start="141510" stop="141569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140831" stop="141430"/>
              <exon start="141510" stop="141517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140831" stop="141430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140831" stop="141379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141075" stop="141430"/>
              <exon start="141510" stop="141665"/>
              <exon start="141748" stop="141802"/>
              <exon start="142527" stop="142676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141140" stop="141430"/>
              <exon start="141510" stop="141665"/>
              <exon start="141748" stop="141802"/>
              <exon start="142527" stop="142742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAG : AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA : GTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTTGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGACGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAG : ACATGGCTGCATCGGCAAAAGTTGTTGGTTCTCCTCAAGTAGCGGGAACTCATGTTATCTCAGCAGGAAATGGTTCCAGCTTCACGCAGCTAATCAACTTG : GCACAGGCAGTTAATTTTGCTATGGAGGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGTTTATCCAGGGCCGGGAGATTCACAATGTAAAGAGGGTGCATTATCTGTTAAGAGGGCCCTTGATTTCAACTTCCAGGATGTGGATGGATTATTGCGTCTTGTGCGGGTCGCCATGGAAGCTATCAGCCATTAGAGTGCAAGCTGTTGTTGAAATTGTCCACTTCTTGGAACATAGTTTTGTACCTGCTCTCCATTACTGTCAGTTGAGCAAGTAAAAGCGAGGATCTCTTGGTTGGAGTTGTGGGTGGATTTTGCTCTATCATCTCCCAAAGTTTTATCTTCTCAATGCTTCTGTACAGTAATACCTGAATTTTACTGTTTGTAAGATGTTTTAGCAGAAGGGGAGTCTTGGAGTAACGGTAAAGTTGTCTCTATGTCACATGAACTGGGTTCAAGCCAAGGAATCAATCACTGATAAGCATCAGGGAAGGCTGCCTTCAACACACCCCTTGGAGAGTGGTCCATCTCCAGACCTAGTCTGAACGTGGATGCTTCATACACCGGGCTGTCAGAAATTCACATCATTCAGTTGCCCGTTACTTGTCCTACTGACTTG : GTACATAAGAAACCGAGATAACTTGTTGGTTTTGACACAGAAGGAAAGATGTAGGGAGTTTTACTTCAAGGAAAGTGCAGAAGTATAATGTAACCAATATATATGCTTCATATGAATTGTTGATTAGAGGAAGAGGAGTTACTATACCTTCTCCCT : CTCTACTTTTTGCAGATGGCTTACTTGGGTACTTGCAGTTTCACCTCTTCATTTG : AAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGCAGAAATTGATTTGCTATGAAAAGGAGGAAGTTGATTTATTTGGAAGATTGATTTTAGAATTTTCATTAATTGATTTATTCTTATAAAATGT</gDNA_template>
            <first_frame> F  P  T  K  V  S  R  L  T  S  L  P  S  L  L  *  Q  E  I  R  M  R  Q  L  Y  L  K  S  Q  F  L  D  L  K  G  K  M  A  M  L  L  K  G  K  G  Q  I  L  Q  D  R  V  K  K  L  K  A  T  T  E  I  Y  L  I  I  L  L  I  R  S  G  I  K  M  F  P  V  L  F  G  R  I  H  Q  V  K  L  L  Q  M  P  *  K  K  P  Q  T  L  N  T  W  Q  I  V  S  R :   I  L  D  Q  A  K  V  R  V  S  I  S  K  R  H  *  S  F  S  M  V  P  P  Y  *  N  *  T  A  P  S  M  V  N  R  T  S  Q  G  A  S  I  A  A  L  Q  N  S  A   : S  F  V  V  M  N  M  R  N  *  E  T  W  Q  L  P  H  L  P  I  N  A  W  R  L  L  T  C  E  *  F  I  L  H  S  P  T  Q  T  D  T  E  T  S  Y  K  Q  L  Y  K  F  F  L  Q  :  T  W  L  H  R  Q  K  L  L  V  L  L  K  *  R  E  L  M  L  S  Q  Q  E  M  V  P  A  S  R  S  *  S  T  W :   H  R  Q  L  I  L  L  W  R  P  P  G  N  H  V  L  L  L  Q  L  F  I  Q  G  R  E  I  H  N  V  K  R  V  H  Y  L  L  R  G  P  L  I  S  T  S  R  M  W  M  D  Y  C  V  L  C  G  S  P  W  K  L  S  A  I  R  V  Q  A  V  V  E  I  V  H  F  L  E  H  S  F  V  P  A  L  H  Y  C  Q  L  S  K  *  K  R  G  S  L  G  W  S  C  G  W  I  L  L  Y  H  L  P  K  F  Y  L  L  N  A  S  V  Q  *  Y  L  N  F  T  V  C  K  M  F  *  Q  K  G  S  L  G  V  T  V  K  L  S  L  C  H  M  N  W  V  Q  A  K  E  S  I  T  D  K  H  Q  G  R  L  P  S  T  H  P  L  E  S  G  P  S  P  D  L  V  *  T  W  M  L  H  T  P  G  C  Q  K  F  T  S  F  S  C  P  L  L  V  L  L  T  W :   Y  I  R  N  R  D  N  L  L  V  L  T  Q  K  E  R  C  R  E  F  Y  F  K  E  S  A  E  V  *  C  N  Q  Y  I  C  F  I  *  I  V  D  *  R  K  R  S  Y  Y  T  F  S  L :   S  T  F  C  R  W  L  T  W  V  L  A  V  S  P  L  H  L  :  K  M  G  N  G  E  T  C  R  V  D  T  C  W  N  *  I  I  V  I  S  I  Y  M  Q  H  S  L  D  N  I  *  R  S  L  S  L  *  G  V  L  A  E  I  D  L  L  *  K  G  G  S  *  F  I  W  K  I  D  F  R  I  F  I  N  *  F  I  L  I  K  C </first_frame>
            <second_frame>  F  Q  Q  K  *  A  D  *  R  L  F  Q  V  S  F  N  K  R  S  E  *  D  S  C  I  *  R  A  S  S  W  I  *  K  G  K  W  Q  C  F  *  K  G  K  V  K  Y  F  K  T  G  *  K  S  *  K  P  P  R  K  S  T  *  *  Y  C  *  *  G  Q  V  S  R  C  S  Q  S  C  S  E  G  F  I  K  S  S  C  Y  K  C  H  K  R  S  H  K  P  *  T  P  G  R  S  S  Q   : E  F  W  I  K  R  K  Y  G  Y  L  F  P  S  G  I  K  V  S  P  W  C  L  L  T  R  I  R  Q  L  Q  A  W  *  T  E  P  V  K  E  H  L  *  Q  H  C  K  T  L  P  :  V  L  W  S  *  I  *  E  I  E  R  H  G  S  C  R  T  C  L  *  M  H  G  G  C  L  H  A  S  N  L  F  F  T  V  R  R  K  Q  I  Q  K  R  V  T  N  S  S  T  N  F  S  S  R :   H  G  C  I  G  K  S  C  W  F  S  S  S  S  G  N  S  C  Y  L  S  R  K  W  F  Q  L  H  A  A  N  Q  L   : G  T  G  S  *  F  C  Y  G  G  L  Q  E  I  T  C  C  F  C  S  C  L  S  R  A  G  R  F  T  M  *  R  G  C  I  I  C  *  E  G  P  *  F  Q  L  P  G  C  G  W  I  I  A  S  C  A  G  R  H  G  S  Y  Q  P  L  E  C  K  L  L  L  K  L  S  T  S  W  N  I  V  L  Y  L  L  S  I  T  V  S  *  A  S  K  S  E  D  L  L  V  G  V  V  G  G  F  C  S  I  I  S  Q  S  F  I  F  S  M  L  L  Y  S  N  T  *  I  L  L  F  V  R  C  F  S  R  R  G  V  L  E  *  R  *  S  C  L  Y  V  T  *  T  G  F  K  P  R  N  Q  S  L  I  S  I  R  E  G  C  L  Q  H  T  P  W  R  V  V  H  L  Q  T  *  S  E  R  G  C  F  I  H  R  A  V  R  N  S  H  H  S  V  A  R  Y  L  S  Y  *  L   : G  T  *  E  T  E  I  T  C  W  F  *  H  R  R  K  D  V  G  S  F  T  S  R  K  V  Q  K  Y  N  V  T  N  I  Y  A  S  Y  E  L  L  I  R  G  R  G  V  T  I  P  S  P   : S  L  L  F  A  D  G  L  L  G  Y  L  Q  F  H  L  F  I  * :   K  W  E  M  E  K  H  V  E  L  I  R  V  G  T  E  *  L  S  Y  Q  F  T  C  N  I  H  W  I  I  Y  E  D  H  F  L  C  K  E  C  *  Q  K  L  I  C  Y  E  K  E  E  V  D  L  F  G  R  L  I  L  E  F  S  L  I  D  L  F  L  *  N   </second_frame>
            <third_frame>   S  N  K  S  E  Q  I  N  V  S  S  K  S  P  L  T  R  D  Q  N  E  T  A  V  F  K  E  P  V  P  G  S  E  R  E  N  G  N  A  F  E  R  E  R  S  N  T  S  R  Q  G  K  K  A  K  S  H  H  G  N  L  P  N  N  T  A  N  K  V  R  Y  Q  D  V  P  S  P  V  R  K  D  S  S  S  Q  A  A  T  N  A  I  K  E  A  T  N  L  K  H  L  A  D  R  L  K  :  N  S  G  S  S  E  S  T  G  I  Y  F  Q  A  A  L  K  F  L  H  G  A  S  L  L  E  L  D  S  S  K  H  G  E  Q  N  Q  S  R  S  I  Y  S  S  T  A  K  L  C  Q :   F  C  G  H  E  Y  E  K  L  R  D  M  A  A  A  A  L  A  Y  K  C  M  E  V  A  Y  M  R  V  I  Y  S  S  Q  S  D  A  N  R  Y  R  N  E  L  Q  T  A  L  Q  I  F  P  P   : D  M  A  A  S  A  K  V  V  G  S  P  Q  V  A  G  T  H  V  I  S  A  G  N  G  S  S  F  T  Q  L  I  N  L  :  A  Q  A  V  N  F  A  M  E  A  S  R  K  S  R  V  A  F  A  A  V  Y  P  G  P  G  D  S  Q  C  K  E  G  A  L  S  V  K  R  A  L  D  F  N  F  Q  D  V  D  G  L  L  R  L  V  R  V  A  M  E  A  I  S  H  *  S  A  S  C  C  *  N  C  P  L  L  G  T  *  F  C  T  C  S  P  L  L  S  V  E  Q  V  K  A  R  I  S  W  L  E  L  W  V  D  F  A  L  S  S  P  K  V  L  S  S  Q  C  F  C  T  V  I  P  E  F  Y  C  L  *  D  V  L  A  E  G  E  S  W  S  N  G  K  V  V  S  M  S  H  E  L  G  S  S  Q  G  I  N  H  *  *  A  S  G  K  A  A  F  N  T  P  L  G  E  W  S  I  S  R  P  S  L  N  V  D  A  S  Y  T  G  L  S  E  I  H  I  I  Q  L  P  V  T  C  P  T  D  L  :  V  H  K  K  P  R  *  L  V  G  F  D  T  E  G  K  M  *  G  V  L  L  Q  G  K  C  R  S  I  M  *  P  I  Y  M  L  H  M  N  C  *  L  E  E  E  E  L  L  Y  L  L  P  :  L  Y  F  L  Q  M  A  Y  L  G  T  C  S  F  T  S  S  F   : E  N  G  K  W  R  N  M  *  S  *  Y  V  L  E  L  N  N  C  H  I  N  L  H  A  T  F  I  G  *  Y  M  K  I  T  F  F  V  R  S  A  S  R  N  *  F  A  M  K  R  R  K  L  I  Y  L  E  D  *  F  *  N  F  H  *  L  I  Y  S  Y  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137611" stop="137925"/>
                    <exon start="138043" stop="138191"/>
                    <exon start="139507" stop="139667"/>
                    <exon start="140345" stop="140445"/>
                    <exon start="140813" stop="141007"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKSEQINVSSKSPLTRDQNETAVFKEPVPGSERENGNAFERERSNTSRQGKKAKSHHGNLPNNTANKVRYQDVPSPVRKDSSSQAATNAIKEATNLKHLADRLKNSGSSESTGIYFQAALKFLHGASLLELDSSKHGEQNQSRSIYSSTAKLCQFCGHEYEKLRDMAAAALAYKCMEVAYMRVIYSSQSDANRYRNELQTALQIFPPDMAASAKVVGSPQVAGTHVISAGNGSSFTQLINLAQAVNFAMEASRKSRVAFAAVYPGPGDSQCKEGALSVKRALDFNFQDVDGLLRLVRVAMEAISH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="141840" e_stop="142651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="141840" e_stop="142651" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141840" stop="142394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141851" stop="142651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141852" stop="142315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATCATCTTATATATAATAATAATAATCATATATCACATCATATCATATATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGTCAAATATTAGAATTCTCAATAAGTTTTCTTCAATATATATTTGTATTCATAGCCGAATTTTTATGCTACCTATAATTACAATATTTAATATCTGTTAACCTCTCACAATTGAATAATAATCATAATAATAATAGTAATAATAATAATAATAATATTTTGCGCACCTTAAGTAAAAGTTAAATAAAATTCAATTAATTAATTTTTCAATTACATAAATTGAACGGGATTTGGAAGTGGAAATGTGGTACTTCAATGCCCAGAGTCATACATGAATTAATTGCTTTAAATTAACACATCGTGTATTACTTTACCTAACTCTTACAATTCCTATAATTTGTCCTTTTCATTTTCTTAACTTGACTTATCGAATTCTAACTCTTCTAAATTAGTAACTAATTTTTGTTAATATAACAATCAGTAGAATTTGAATAGTTCATTAATTATTATGTCAAAACGAATTTCAAAGAAAATAAAAAACACTATATAAAAGTAACGAATGATTTCCATTTTGTTCAAGTTTTGTTTCTTTAGTTGTGCATCTGGCCTTCTTTCTAAGTTTCTTTCTTTTCACTTAAATTTTTCCTTTTGCATGAACTAAAGAAAATGGGAAATGGAGAAACATGTAGAGTTGATACGTGTTGGAACTGAATAATTGTCATATCAATTTACATGCAACATTCATTGGATAATATATGAAGATCACTTTCTTTGTAAGGAGTGCTAGC</gDNA_template>
            <first_frame> I  S  S  Y  I  *  *  *  *  S  Y  I  T  S  Y  H  I  L  L  *  V  G  R  T  Q  V  K  S  C  Q  I  L  E  F  S  I  S  F  L  Q  Y  I  F  V  F  I  A  E  F  L  C  Y  L  *  L  Q  Y  L  I  S  V  N  L  S  Q  L  N  N  N  H  N  N  N  S  N  N  N  N  N  N  I  L  R  T  L  S  K  S  *  I  K  F  N  *  L  I  F  Q  L  H  K  L  N  G  I  W  K  W  K  C  G  T  S  M  P  R  V  I  H  E  L  I  A  L  N  *  H  I  V  Y  Y  F  T  *  L  L  Q  F  L  *  F  V  L  F  I  F  L  T  *  L  I  E  F  *  L  F  *  I  S  N  *  F  L  L  I  *  Q  S  V  E  F  E  *  F  I  N  Y  Y  V  K  T  N  F  K  E  N  K  K  H  Y  I  K  V  T  N  D  F  H  F  V  Q  V  L  F  L  *  L  C  I  W  P  S  F  *  V  S  F  F  S  L  K  F  F  L  L  H  E  L  K  K  M  G  N  G  E  T  C  R  V  D  T  C  W  N  *  I  I  V  I  S  I  Y  M  Q  H  S  L  D  N  I  *  R  S  L  S  L  *  G  V  L   </first_frame>
            <second_frame>  Y  H  L  I  Y  N  N  N  N  H  I  S  H  H  I  I  Y  Y  Y  K  W  E  E  L  K  S  K  V  V  K  Y  *  N  S  Q  *  V  F  F  N  I  Y  L  Y  S  *  P  N  F  Y  A  T  Y  N  Y  N  I  *  Y  L  L  T  S  H  N  *  I  I  I  I  I  I  I  V  I  I  I  I  I  I  F  C  A  P  *  V  K  V  K  *  N  S  I  N  *  F  F  N  Y  I  N  *  T  G  F  G  S  G  N  V  V  L  Q  C  P  E  S  Y  M  N  *  L  L  *  I  N  T  S  C  I  T  L  P  N  S  Y  N  S  Y  N  L  S  F  S  F  S  *  L  D  L  S  N  S  N  S  S  K  L  V  T  N  F  C  *  Y  N  N  Q  *  N  L  N  S  S  L  I  I  M  S  K  R  I  S  K  K  I  K  N  T  I  *  K  *  R  M  I  S  I  L  F  K  F  C  F  F  S  C  A  S  G  L  L  S  K  F  L  S  F  H  L  N  F  S  F  C  M  N  *  R  K  W  E  M  E  K  H  V  E  L  I  R  V  G  T  E  *  L  S  Y  Q  F  T  C  N  I  H  W  I  I  Y  E  D  H  F  L  C  K  E  C  *  </second_frame>
            <third_frame>   I  I  L  Y  I  I  I  I  I  I  Y  H  I  I  S  Y  I  I  I  S  G  K  N  S  S  Q  K  L  S  N  I  R  I  L  N  K  F  S  S  I  Y  I  C  I  H  S  R  I  F  M  L  P  I  I  T  I  F  N  I  C  *  P  L  T  I  E  *  *  S  *  *  *  *  *  *  *  *  *  *  Y  F  A  H  L  K  *  K  L  N  K  I  Q  L  I  N  F  S  I  T  *  I  E  R  D  L  E  V  E  M  W  Y  F  N  A  Q  S  H  T  *  I  N  C  F  K  L  T  H  R  V  L  L  Y  L  T  L  T  I  P  I  I  C  P  F  H  F  L  N  L  T  Y  R  I  L  T  L  L  N  *  *  L  I  F  V  N  I  T  I  S  R  I  *  I  V  H  *  L  L  C  Q  N  E  F  Q  R  K  *  K  T  L  Y  K  S  N  E  *  F  P  F  C  S  S  F  V  S  L  V  V  H  L  A  F  F  L  S  F  F  L  F  T  *  I  F  P  F  A  *  T  K  E  N  G  K  W  R  N  M  *  S  *  Y  V  L  E  L  N  N  C  H  I  N  L  H  A  T  F  I  G  *  Y  M  K  I  T  F  F  V  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0019E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="135481" e_stop="136232"/>
            <exon e_start="136322" e_stop="136580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135481" e_stop="136232" e_length="752"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="1.000">
            <gDNA_intron_boundary i_start="136233" i_stop="136321" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="136322" e_stop="136580" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135481" stop="136149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135482" stop="136009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135975" stop="136232"/>
              <exon start="136322" stop="136580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTCGGAAGCTAGGAAATGGAAATCGTACAATAAAGATGTTTTAGGAATTGGCTATGGCAGTGACAATCAAAATGGTAGCACAGTGCAATCAAAGGAGCTTGATCTAAAGGTTATCACCTGTGAAGAACTTGTTTCTGAGGCATTAAAACTCCCTCTATTATCTAATCCAAATCATAATGTTGCTGATCCTCTAAAAGATGCTGGCAGAGTAAGTGACAGTCCAAGAGCAGCCGTTAGGGATAAGACAGCAGAATGCTCATCCTATAAAGCTGGTTCACAGGAAAGTCGTTCACCAGAAATGTTGAAGGTTTCTGATGCTGTCGGTAATAAAAGTTTGGTTGAACATAACTGCTTGACAAAGGAAAGAGTTAATGTTGGAAAAACTGAGAAGCCATGTTCATCCGGGGAGTATCCGATATTGGCTTCAAATGAATCAACTTCCCTTGATGCTTTGCATGCCAGCCAAGACAACCGGGATCATAGTGTACAAGGTATCGATTCCAGTGGCAGGAAAAGATATGGATCAAAAGGTTCGTCAAGTGGAACCAAAGAAGACGGCTCACAATCTTCCAACTACGTTATGATGAACCATCAGGAGAACCCGAATTGTAGAAGCTCAAGTGGTACTTCTCGTTCACTGGATAAAACTTGCAACCAACACACCGGCGTTCCAAATAGCTCAGTTGTAGAGAAGAGGAGACATAAAAACAAAGAGAAGAAAATTTCTCATGATAACCACTCTGATGGAG : GTACGAAGGATGCAAATACAAGGAACACAAGTGAAGTGGAATCAGATGTATCTTCCAAAAAAATTATACAAGATGATGCACTCGATGACGAGAACCAGACCTTTTGCCCTGTTGTTGAAAAGTCTAGATGGAGTTCAAGCAGTAAAATGCCAGAGATGATTCGTGACAAATGTAAGAACAGGGACTCAGAGGATGATTCAAAGAAAGACTTGGTTTCAGCAAAGAACCCAGAAGCTTATATTTCCGATGTGTCAACGCA</gDNA_template>
            <first_frame> I  F  G  S  *  E  M  E  I  V  Q  *  R  C  F  R  N  W  L  W  Q  *  Q  S  K  W  *  H  S  A  I  K  G  A  *  S  K  G  Y  H  L  *  R  T  C  F  *  G  I  K  T  P  S  I  I  *  S  K  S  *  C  C  *  S  S  K  R  C  W  Q  S  K  *  Q  S  K  S  S  R  *  G  *  D  S  R  M  L  I  L  *  S  W  F  T  G  K  S  F  T  R  N  V  E  G  F  *  C  C  R  *  *  K  F  G  *  T  *  L  L  D  K  G  K  S  *  C  W  K  N  *  E  A  M  F  I  R  G  V  S  D  I  G  F  K  *  I  N  F  P  *  C  F  A  C  Q  P  R  Q  P  G  S  *  C  T  R  Y  R  F  Q  W  Q  E  K  I  W  I  K  R  F  V  K  W  N  Q  R  R  R  L  T  I  F  Q  L  R  Y  D  E  P  S  G  E  P  E  L  *  K  L  K  W  Y  F  S  F  T  G  *  N  L  Q  P  T  H  R  R  S  K  *  L  S  C  R  E  E  E  T  *  K  Q  R  E  E  N  F  S  *  *  P  L  *  W  R :   Y  E  G  C  K  Y  K  E  H  K  *  S  G  I  R  C  I  F  Q  K  N  Y  T  R  *  C  T  R  *  R  E  P  D  L  L  P  C  C  *  K  V  *  M  E  F  K  Q  *  N  A  R  D  D  S  *  Q  M  *  E  Q  G  L  R  G  *  F  K  E  R  L  G  F  S  K  E  P  R  S  L  Y  F  R  C  V  N  A </first_frame>
            <second_frame>  S  S  E  A  R  K  W  K  S  Y  N  K  D  V  L  G  I  G  Y  G  S  D  N  Q  N  G  S  T  V  Q  S  K  E  L  D  L  K  V  I  T  C  E  E  L  V  S  E  A  L  K  L  P  L  L  S  N  P  N  H  N  V  A  D  P  L  K  D  A  G  R  V  S  D  S  P  R  A  A  V  R  D  K  T  A  E  C  S  S  Y  K  A  G  S  Q  E  S  R  S  P  E  M  L  K  V  S  D  A  V  G  N  K  S  L  V  E  H  N  C  L  T  K  E  R  V  N  V  G  K  T  E  K  P  C  S  S  G  E  Y  P  I  L  A  S  N  E  S  T  S  L  D  A  L  H  A  S  Q  D  N  R  D  H  S  V  Q  G  I  D  S  S  G  R  K  R  Y  G  S  K  G  S  S  S  G  T  K  E  D  G  S  Q  S  S  N  Y  V  M  M  N  H  Q  E  N  P  N  C  R  S  S  S  G  T  S  R  S  L  D  K  T  C  N  Q  H  T  G  V  P  N  S  S  V  V  E  K  R  R  H  K  N  K  E  K  K  I  S  H  D  N  H  S  D  G   : G  T  K  D  A  N  T  R  N  T  S  E  V  E  S  D  V  S  S  K  K  I  I  Q  D  D  A  L  D  D  E  N  Q  T  F  C  P  V  V  E  K  S  R  W  S  S  S  S  K  M  P  E  M  I  R  D  K  C  K  N  R  D  S  E  D  D  S  K  K  D  L  V  S  A  K  N  P  E  A  Y  I  S  D  V  S  T   </second_frame>
            <third_frame>   L  R  K  L  G  N  G  N  R  T  I  K  M  F  *  E  L  A  M  A  V  T  I  K  M  V  A  Q  C  N  Q  R  S  L  I  *  R  L  S  P  V  K  N  L  F  L  R  H  *  N  S  L  Y  Y  L  I  Q  I  I  M  L  L  I  L  *  K  M  L  A  E  *  V  T  V  Q  E  Q  P  L  G  I  R  Q  Q  N  A  H  P  I  K  L  V  H  R  K  V  V  H  Q  K  C  *  R  F  L  M  L  S  V  I  K  V  W  L  N  I  T  A  *  Q  R  K  E  L  M  L  E  K  L  R  S  H  V  H  P  G  S  I  R  Y  W  L  Q  M  N  Q  L  P  L  M  L  C  M  P  A  K  T  T  G  I  I  V  Y  K  V  S  I  P  V  A  G  K  D  M  D  Q  K  V  R  Q  V  E  P  K  K  T  A  H  N  L  P  T  T  L  *  *  T  I  R  R  T  R  I  V  E  A  Q  V  V  L  L  V  H  W  I  K  L  A  T  N  T  P  A  F  Q  I  A  Q  L  *  R  R  G  D  I  K  T  K  R  R  K  F  L  M  I  T  T  L  M  E  :  V  R  R  M  Q  I  Q  G  T  Q  V  K  W  N  Q  M  Y  L  P  K  K  L  Y  K  M  M  H  S  M  T  R  T  R  P  F  A  L  L  L  K  S  L  D  G  V  Q  A  V  K  C  Q  R  *  F  V  T  N  V  R  T  G  T  Q  R  M  I  Q  R  K  T  W  F  Q  Q  R  T  Q  K  L  I  F  P  M  C  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135482" stop="136232"/>
                    <exon start="136322" stop="136578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSEARKWKSYNKDVLGIGYGSDNQNGSTVQSKELDLKVITCEELVSEALKLPLLSNPNHNVADPLKDAGRVSDSPRAAVRDKTAECSSYKAGSQESRSPEMLKVSDAVGNKSLVEHNCLTKERVNVGKTEKPCSSGEYPILASNESTSLDALHASQDNRDHSVQGIDSSGRKRYGSKGSSSGTKEDGSQSSNYVMMNHQENPNCRSSSGTSRSLDKTCNQHTGVPNSSVVEKRRHKNKEKKISHDNHSDGGTKDANTRNTSEVESDVSSKKIIQDDALDDENQTFCPVVEKSRWSSSSKMPEMIRDKCKNRDSEDDSKKDLVSAKNPEAYISDVST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="134395" e_stop="134525"/>
            <exon e_start="134798" e_stop="135193"/>
            <exon e_start="138043" e_stop="138191"/>
            <exon e_start="139507" e_stop="139534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134395" e_stop="134525" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134526" i_stop="134797" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134798" e_stop="135193" e_length="396"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="135194" i_stop="138042" i_length="2849"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138043" e_stop="138191" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.992">
            <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="139507" e_stop="139534" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134395" stop="134525"/>
              <exon start="134798" stop="135193"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134395" stop="134525"/>
              <exon start="134798" stop="135193"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134395" stop="134525"/>
              <exon start="134798" stop="134973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCAAAATTTGGTGGATACGGTTCATTTTTACCTACATATCAGCGTTCACCTTCTTGGACTTGTACAAAGACTCCACCAGATGCCTACAACAATAACAGATCAACATCACCGAGCAGTTTGCGCCCAGAG : GGTGGTCGTCGACCCTCATCAGCCTCCTCATCTGCTTCTCTATCAGGAAAGCCCCTAGCATCTTCTGCCTATTCATCAACAATAGTACCTACACTGAAGGCTCCAGCAGCTAATGGGAAAACAAATTCATCTCTGCAACCTGCGCAAGATGAAGACTCCACTTCAAGAAGTGAACTAGTCAAGAAGCCAACAAATCTCTCAGACAAGAAAACTCCCAAGTTGCATGCGAGAATTGGTATTAAAAAATTCTCAACCCAAAAGAAAGCTGAAATCTACAGCGGCCTTGGCCTTGATGTATCTCCATCATCGTCGCTGGATGATAGCCCGATAAGCAGTGAAGGCTTATCCCATGACCTTAGGGATTCCCGATATGAATCTCCAACAAGTATACTTCAG : AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA : GTTTTGTGGTCATGAATATGAGAAATTG</gDNA_template>
            <first_frame> G  Q  N  L  V  D  T  V  H  F  Y  L  H  I  S  V  H  L  L  G  L  V  Q  R  L  H  Q  M  P  T  T  I  T  D  Q  H  H  R  A  V  C  A  Q  R :   V  V  V  D  P  H  Q  P  P  H  L  L  L  Y  Q  E  S  P  *  H  L  L  P  I  H  Q  Q  *  Y  L  H  *  R  L  Q  Q  L  M  G  K  Q  I  H  L  C  N  L  R  K  M  K  T  P  L  Q  E  V  N  *  S  R  S  Q  Q  I  S  Q  T  R  K  L  P  S  C  M  R  E  L  V  L  K  N  S  Q  P  K  R  K  L  K  S  T  A  A  L  A  L  M  Y  L  H  H  R  R  W  M  I  A  R  *  A  V  K  A  Y  P  M  T  L  G  I  P  D  M  N  L  Q  Q  V  Y  F  R :   I  L  D  Q  A  K  V  R  V  S  I  S  K  R  H  *  S  F  S  M  V  P  P  Y  *  N  *  T  A  P  S  M  V  N  R  T  S  Q  G  A  S  I  A  A  L  Q  N  S  A   : S  F  V  V  M  N  M  R  N   </first_frame>
            <second_frame>  V  K  I  W  W  I  R  F  I  F  T  Y  I  S  A  F  T  F  L  D  L  Y  K  D  S  T  R  C  L  Q  Q  *  Q  I  N  I  T  E  Q  F  A  P  R   : G  W  S  S  T  L  I  S  L  L  I  C  F  S  I  R  K  A  P  S  I  F  C  L  F  I  N  N  S  T  Y  T  E  G  S  S  S  *  W  E  N  K  F  I  S  A  T  C  A  R  *  R  L  H  F  K  K  *  T  S  Q  E  A  N  K  S  L  R  Q  E  N  S  Q  V  A  C  E  N  W  Y  *  K  I  L  N  P  K  E  S  *  N  L  Q  R  P  W  P  *  C  I  S  I  I  V  A  G  *  *  P  D  K  Q  *  R  L  I  P  *  P  *  G  F  P  I  *  I  S  N  K  Y  T  S   : E  F  W  I  K  R  K  Y  G  Y  L  F  P  S  G  I  K  V  S  P  W  C  L  L  T  R  I  R  Q  L  Q  A  W  *  T  E  P  V  K  E  H  L  *  Q  H  C  K  T  L  P  :  V  L  W  S  *  I  *  E  I  </second_frame>
            <third_frame>   S  K  F  G  G  Y  G  S  F  L  P  T  Y  Q  R  S  P  S  W  T  C  T  K  T  P  P  D  A  Y  N  N  N  R  S  T  S  P  S  S  L  R  P  E  :  G  G  R  R  P  S  S  A  S  S  S  A  S  L  S  G  K  P  L  A  S  S  A  Y  S  S  T  I  V  P  T  L  K  A  P  A  A  N  G  K  T  N  S  S  L  Q  P  A  Q  D  E  D  S  T  S  R  S  E  L  V  K  K  P  T  N  L  S  D  K  K  T  P  K  L  H  A  R  I  G  I  K  K  F  S  T  Q  K  K  A  E  I  Y  S  G  L  G  L  D  V  S  P  S  S  S  L  D  D  S  P  I  S  S  E  G  L  S  H  D  L  R  D  S  R  Y  E  S  P  T  S  I  L  Q  :  N  S  G  S  S  E  S  T  G  I  Y  F  Q  A  A  L  K  F  L  H  G  A  S  L  L  E  L  D  S  S  K  H  G  E  Q  N  Q  S  R  S  I  Y  S  S  T  A  K  L  C  Q :   F  C  G  H  E  Y  E  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134397" stop="134525"/>
                    <exon start="134798" stop="135193"/>
                    <exon start="138043" stop="138191"/>
                    <exon start="139507" stop="139534"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFGGYGSFLPTYQRSPSWTCTKTPPDAYNNNRSTSPSSLRPEGGRRPSSASSSASLSGKPLASSAYSSTIVPTLKAPAANGKTNSSLQPAQDEDSTSRSELVKKPTNLSDKKTPKLHARIGIKKFSTQKKAEIYSGLGLDVSPSSSLDDSPISSEGLSHDLRDSRYESPTSILQNSGSSESTGIYFQAALKFLHGASLLELDSSKHGEQNQSRSIYSSTAKLCQFCGHEYEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="137610" e_stop="137925"/>
            <exon e_start="138043" e_stop="138191"/>
            <exon e_start="139507" e_stop="139667"/>
            <exon e_start="140285" e_stop="140365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.981" e_score="0.987"/>
          <exon-intron don_prob="0.940" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.608" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="137610" e_stop="137925" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.981">
            <gDNA_intron_boundary i_start="137926" i_stop="138042" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138043" e_stop="138191" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.992">
            <gDNA_intron_boundary i_start="138192" i_stop="139506" i_length="1315"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="139507" e_stop="139667" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.608" acc_prob="0.961">
            <gDNA_intron_boundary i_start="139668" i_stop="140284" i_length="617"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140285" e_stop="140365" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137610" stop="137925"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137743" stop="137925"/>
              <exon start="138043" stop="138191"/>
              <exon start="139507" stop="139667"/>
              <exon start="140285" stop="140365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCAACAAAAGTGAGCAGATTAACGTCTCTTCCAAGTCTCCTTTAACAAGAGATCAGAATGAGACAGCTGTATTTAAAGAGCCAGTTCCTGGATCTGAAAGGGAAAATGGCAATGCTTTTGAAAGGGAAAGGTCAAATACTTCAAGACAGGGTAAAAAAGCTAAAAGCCACCACGGAAATCTACCTAATAATACTGCTAATAAGGTCAGGTATCAAGATGTTCCCAGTCCTGTTCGGAAGGATTCATCAAGTCAAGCTGCTACAAATGCCATAAAAGAAGCCACAAACCTTAAACACCTGGCAGATCGTCTCAAG : AATTCTGGATCAAGCGAAAGTACGGGTATCTATTTCCAAGCGGCATTAAAGTTTCTCCATGGTGCCTCCTTACTAGAATTAGACAGCTCCAAGCATGGTGAACAGAACCAGTCAAGGAGCATCTATAGCAGCACTGCAAAACTCTGCCA : GTTTTGTGGTCATGAATATGAGAAATTGAGAGACATGGCAGCTGCCGCACTTGCCTATAAATGCATGGAGGTTGCTTACATGCGAGTAATTTATTCTTCACAGTCCGACGCAAACAGATACAGAAACGAGTTACAAACAGCTCTACAAATTTTTCCTCCAG : GTGAGTCTCCTTTCTCTTCTATCTCTGATGTTGACAATTTGAACAATCCAACAATAGTAGACATGGCTGCATCGGCAAAAG</gDNA_template>
            <first_frame> F  Q  Q  K  *  A  D  *  R  L  F  Q  V  S  F  N  K  R  S  E  *  D  S  C  I  *  R  A  S  S  W  I  *  K  G  K  W  Q  C  F  *  K  G  K  V  K  Y  F  K  T  G  *  K  S  *  K  P  P  R  K  S  T  *  *  Y  C  *  *  G  Q  V  S  R  C  S  Q  S  C  S  E  G  F  I  K  S  S  C  Y  K  C  H  K  R  S  H  K  P  *  T  P  G  R  S  S  Q   : E  F  W  I  K  R  K  Y  G  Y  L  F  P  S  G  I  K  V  S  P  W  C  L  L  T  R  I  R  Q  L  Q  A  W  *  T  E  P  V  K  E  H  L  *  Q  H  C  K  T  L  P  :  V  L  W  S  *  I  *  E  I  E  R  H  G  S  C  R  T  C  L  *  M  H  G  G  C  L  H  A  S  N  L  F  F  T  V  R  R  K  Q  I  Q  K  R  V  T  N  S  S  T  N  F  S  S  R :   *  V  S  F  L  F  Y  L  *  C  *  Q  F  E  Q  S  N  N  S  R  H  G  C  I  G  K   </first_frame>
            <second_frame>  S  N  K  S  E  Q  I  N  V  S  S  K  S  P  L  T  R  D  Q  N  E  T  A  V  F  K  E  P  V  P  G  S  E  R  E  N  G  N  A  F  E  R  E  R  S  N  T  S  R  Q  G  K  K  A  K  S  H  H  G  N  L  P  N  N  T  A  N  K  V  R  Y  Q  D  V  P  S  P  V  R  K  D  S  S  S  Q  A  A  T  N  A  I  K  E  A  T  N  L  K  H  L  A  D  R  L  K  :  N  S  G  S  S  E  S  T  G  I  Y  F  Q  A  A  L  K  F  L  H  G  A  S  L  L  E  L  D  S  S  K  H  G  E  Q  N  Q  S  R  S  I  Y  S  S  T  A  K  L  C  Q :   F  C  G  H  E  Y  E  K  L  R  D  M  A  A  A  A  L  A  Y  K  C  M  E  V  A  Y  M  R  V  I  Y  S  S  Q  S  D  A  N  R  Y  R  N  E  L  Q  T  A  L  Q  I  F  P  P   : G  E  S  P  F  S  S  I  S  D  V  D  N  L  N  N  P  T  I  V  D  M  A  A  S  A  K  </second_frame>
            <third_frame>   P  T  K  V  S  R  L  T  S  L  P  S  L  L  *  Q  E  I  R  M  R  Q  L  Y  L  K  S  Q  F  L  D  L  K  G  K  M  A  M  L  L  K  G  K  G  Q  I  L  Q  D  R  V  K  K  L  K  A  T  T  E  I  Y  L  I  I  L  L  I  R  S  G  I  K  M  F  P  V  L  F  G  R  I  H  Q  V  K  L  L  Q  M  P  *  K  K  P  Q  T  L  N  T  W  Q  I  V  S  R :   I  L  D  Q  A  K  V  R  V  S  I  S  K  R  H  *  S  F  S  M  V  P  P  Y  *  N  *  T  A  P  S  M  V  N  R  T  S  Q  G  A  S  I  A  A  L  Q  N  S  A   : S  F  V  V  M  N  M  R  N  *  E  T  W  Q  L  P  H  L  P  I  N  A  W  R  L  L  T  C  E  *  F  I  L  H  S  P  T  Q  T  D  T  E  T  S  Y  K  Q  L  Y  K  F  F  L  Q  :  V  S  L  L  S  L  L  S  L  M  L  T  I  *  T  I  Q  Q  *  *  T  W  L  H  R  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137611" stop="137925"/>
                    <exon start="138043" stop="138191"/>
                    <exon start="139507" stop="139667"/>
                    <exon start="140285" stop="140364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKSEQINVSSKSPLTRDQNETAVFKEPVPGSERENGNAFERERSNTSRQGKKAKSHHGNLPNNTANKVRYQDVPSPVRKDSSSQAATNAIKEATNLKHLADRLKNSGSSESTGIYFQAALKFLHGASLLELDSSKHGEQNQSRSIYSSTAKLCQFCGHEYEKLRDMAAAALAYKCMEVAYMRVIYSSQSDANRYRNELQTALQIFPPGESPFSSISDVDNLNNPTIVDMAASAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="136944" e_stop="137478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="136944" e_stop="137478" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136944" stop="137478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTGTTCTCCAATAAATCCAGTATGGTTAAGAAGGATAATGCCTGCAATGGCAAGAGTTATGATCTATTATCTGAAGCTGAATTAGAGGAGAAAGATGTTCATCGTGAATCAGGTAAAAAAGTCAAAGCAAAGTCCATGGTTTCTGGTTATGCAACTCAACAGGATACCGATGTAAGTGCAGATCCCTTACGTCAAGCTAGTCACTTTGCTTGCAAGACTGGAAACTCAGACCAAGGCTCCGATAAGGAGAGAAAGAATGACCATCAGTTTCAGAATAGTGGGTCTGTGTCAAATAGGAAAAGAGGTTCCTCGTCACGGCGTAAAGAGAAGAATCGGGCTCCAAAATCTGATTCTGACCAATGTAAGACCAAAGATACTGATATCTTAAATTTATCTTCAGAGCAAATGCCATTTAATGAAGAGAAGACGGCACCAGGAAAAAATAAGTCTCAGGGGAAATCTGTTGTTGGTTCAGATAGATTAAAAAAGAGTTCTAAGAAGGATCCTTCTGGAAAATTATTGGAAAAAAAT</gDNA_template>
            <first_frame> *  C  V  L  Q  *  I  Q  Y  G  *  E  G  *  C  L  Q  W  Q  E  L  *  S  I  I  *  S  *  I  R  G  E  R  C  S  S  *  I  R  *  K  S  Q  S  K  V  H  G  F  W  L  C  N  S  T  G  Y  R  C  K  C  R  S  L  T  S  S  *  S  L  C  L  Q  D  W  K  L  R  P  R  L  R  *  G  E  K  E  *  P  S  V  S  E  *  W  V  C  V  K  *  E  K  R  F  L  V  T  A  *  R  E  E  S  G  S  K  I  *  F  *  P  M  *  D  Q  R  Y  *  Y  L  K  F  I  F  R  A  N  A  I  *  *  R  E  D  G  T  R  K  K  *  V  S  G  E  I  C  C  W  F  R  *  I  K  K  E  F  *  E  G  S  F  W  K  I  I  G  K  K  </first_frame>
            <second_frame>  D  V  F  S  N  K  S  S  M  V  K  K  D  N  A  C  N  G  K  S  Y  D  L  L  S  E  A  E  L  E  E  K  D  V  H  R  E  S  G  K  K  V  K  A  K  S  M  V  S  G  Y  A  T  Q  Q  D  T  D  V  S  A  D  P  L  R  Q  A  S  H  F  A  C  K  T  G  N  S  D  Q  G  S  D  K  E  R  K  N  D  H  Q  F  Q  N  S  G  S  V  S  N  R  K  R  G  S  S  S  R  R  K  E  K  N  R  A  P  K  S  D  S  D  Q  C  K  T  K  D  T  D  I  L  N  L  S  S  E  Q  M  P  F  N  E  E  K  T  A  P  G  K  N  K  S  Q  G  K  S  V  V  G  S  D  R  L  K  K  S  S  K  K  D  P  S  G  K  L  L  E  K  N </second_frame>
            <third_frame>   M  C  S  P  I  N  P  V  W  L  R  R  I  M  P  A  M  A  R  V  M  I  Y  Y  L  K  L  N  *  R  R  K  M  F  I  V  N  Q  V  K  K  S  K  Q  S  P  W  F  L  V  M  Q  L  N  R  I  P  M  *  V  Q  I  P  Y  V  K  L  V  T  L  L  A  R  L  E  T  Q  T  K  A  P  I  R  R  E  R  M  T  I  S  F  R  I  V  G  L  C  Q  I  G  K  E  V  P  R  H  G  V  K  R  R  I  G  L  Q  N  L  I  L  T  N  V  R  P  K  I  L  I  S  *  I  Y  L  Q  S  K  C  H  L  M  K  R  R  R  H  Q  E  K  I  S  L  R  G  N  L  L  L  V  Q  I  D  *  K  R  V  L  R  R  I  L  L  E  N  Y  W  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0019E05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136945" stop="137478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVFSNKSSMVKKDNACNGKSYDLLSEAELEEKDVHRESGKKVKAKSMVSGYATQQDTDVSADPLRQASHFACKTGNSDQGSDKERKNDHQFQNSGSVSNRKRGSSSRRKEKNRAPKSDSDQCKTKDTDILNLSSEQMPFNEEKTAPGKNKSQGKSVVGSDRLKKSSKKDPSGKLLEKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 277 chains have been computed
$ 
$ memory statistics:
$ 336376 bytes spliced alignments in total
$ 93 spliced alignments have been stored
$ 3616 bytes was the average size of a spliced alignment
$ 31192 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1559 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 341 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:38:22
-->
