<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:35:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="+" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3382" stop="4535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3682" g_stop="4235" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3682" e_stop="4235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTAAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAACGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4705" stop="3386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4405" g_stop="3686" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4405" e_stop="3686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGAAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGTTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCCTTACCCTCTCT-TACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCT-CCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4702" stop="3439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4402" g_stop="3739" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4402" e_stop="3739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGAAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGTTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCCTTACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5631" stop="4701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5331" g_stop="5001" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5331" e_stop="5001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAATTTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCACGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="+" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4731" stop="5950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5031" g_stop="5654" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5031" e_stop="5654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAAATTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAACCCGGTTCGTATTGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATATTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTAGATGTTTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATCGATCTTGAACCGAGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCTCAACTTCAAGAGTTAAAG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263831" ref_strand="+" ref_description="SGN-E263831 [cLEG-74-N6]">
      <seq>cattcatttctctaaatccgtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="+" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5798" stop="7152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6078" g_stop="6142" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6143" i_stop="6745" i_length="603">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6746" g_stop="6852" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="173" r_length="107" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="+" ref_id="SGN-E263831" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6078" e_stop="6142"/>
          <exon e_start="6746" e_stop="6852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNATTTGGTC-AGTTCCTGCTTTTGAAGATGGAGATCTCAAGCTTTTTGGTAAGTTAAACTTTTTTTGCACATTCATAATCTAATATTTGTGATTTTACATATATATCTATATATGTTCTCGTGTTAAAAATACTCGGGATTTAAAATTTATAAACTCGAGTTCTTTATTATACTACAATTTATTCGATTTACAAAATCTAAATAAAAGTTACTAATTCGAATGAACACATAGCATGTATACTAGGATCACCTTTTGATTTAGTTGAACTATTAAGTTTATACTATGTTTGTCTCGAACAAATTCGACTAATTTAAATTTGTGCGAACAACATATCCTGTAATTAGTATAGTTCCTCAAATGGTGTCTAAATTGTATATATACCTCAAGAAAATCGTTTCTCAAAACTACACTGTATTAACGTATGACCTATTTAAGGAGAAATACTCTATCTTTGGTTTCAAGATCTAAAGTAAAATTAGATACTAGTTCGAATGAATACACAACTTGTATACTATGTCACATATTCAGTATAATTCTATAAGTGCGATCTGGGGAAGGTAGTATGTATGCATACCTTATGCTCTACCTTCGTGTGGTAGAGAGGATGTTTTCGATAGACGTTTGATTTTTGTGAATTATTGTGAATGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCTGACAAGGGGAACCAACTCTTACCAAATGACCCAAAGAAAATGGCAATCATGTATGTATGGATTGAA</genome_strand>
        <mrna_strand>CATTCATTTCTCTAAATCCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220834" ref_strand="+" ref_description="SGN-E220834 [cLEL-22-B22](-)">
      <seq>actttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgcttcctgcaggtgaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaagttcttttcctgatgtgtgtctgttttcctgatgaattagggtagtagggaggttggtgttttatgcaaccataagccctggtttgccggtgccatagggcagtcaccttttatctttgtgattgaaggatgtttattacccttctgtgagttataaccctttcttatccccctttgagaaatagaattgactagttcacagagttatatccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18279" stop="10515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17979" g_stop="17645" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17644" i_stop="16123" i_length="1522">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16122" g_stop="16104" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="352" r_length="17" r_score="0.684"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16103" i_stop="15810" i_length="294">
            <donor d_prob="0.941" d_score="0.00"/>
            <acceptor a_prob="0.298" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15809" g_stop="15803" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="359" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E220834" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17979" e_stop="17645"/>
          <exon e_start="16122" e_stop="16104"/>
          <exon e_start="15809" e_stop="15803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGGAGGTTGGTGTTTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGAAATAGAATTGACTAGTTCACAGAGTTATATCCATTCCTTGCCTCGAGTAACAACTCAACGCAACAATCTTGAACGACTTAGTTGAAAATAATGATCAAATCGAATTCATTAAAAAAAATACAACTGTTTCTGAAAGAAGTGGATCCCAATGAGTAAGAAGCTCACTAAATGTATATCAAGTTTCTATACTACTAATAATTCTCGTGGACAACCTGATATATTTATGAGGAGGATAACTTGGAGCTCCATACACTGCATTTAGTCTTTTATTTTATACATGAAGATTGTGATTAACACTACACAAGACCCTAAAGTATTTGTTTTGTTACACAACCACCACAGCCTTGTAATATATAGATACTGAGTGCAGAAATCAAATAAATACACAAACAAATGAGTTTCTTTTCTTTTCCTTTCCTCCTGGAGTTGAAGAAACAGATCACATATTTGTAATCTTATTCACTAGGACAACACAACAAATCAAATGCCAAGTAGAAACAATTTAAGCTTTAGTCTTTGGCTTCTTCACAATCATCACACTGCAGTGGGCATGATGAGCACAGTAGTCACTTACACTACCCAAAACAGTCCTGCACAATCAATAATGTGTTTAGCACAAAAACAAGTTCTTGTTCTAAGCATTGAAGGTGTAAATAAATTTATATGCAATCAGACCACCTATAAAGTCAACAACAACGACACCAACATGCCCAATGAGATCTCACAAGTCGGACTTTAGGAGGGTAGAAAAGAGGCTAAGAGTAAGAGTAAAGCGTAAGTCCACTCGGAAGCTCGAACAACTTCCCTTCATTTTCTTCGCCGGAGCGGCACAACACATAACTGGAAGTCAGAGGGCCCATACTACCTGCCTAACCCTTCGTTTCGAGGGACTATAGATCGGGAAGCACCTTCTAAATCACCCCATTCATCCAAAAGAGAAGGGAAGGGGCCTAATATATAGACGTTAACCCCACATTGTGCAAGGTATAGGGATTGTTTTTTGATACACTCAGCTAAAAAGATCTTTCGAAAACAAGTTTGAAAAATATAAGACAGAAGAAGCATTGATGAAAATGCCAAGGAAAAGAAAAAATAGTAAGACAAATAATATTAGTAGTAGCAATGATAAGGAGAAGAGGGAGCAAAATGGGTACTCCAACTAGAGCCACACTCTTTCAAGAGAAATTGCTCGACTATTCACTAACTTTCTACCCTAATTCTCGACCTTCATGCTCTTCTATCTAATCTAAGGTCAGATCATCTATAAGGCCATCGTCCAAAAACCAACATAGTAAATGTTAATCCTGATAAAAATTGAAACCAACATGTTATAGTAGGAAAGATCAACAACACTAGAATTACCATCGAGAATTGCTCGTTAATTAGAAATATAAACAAGCTATTTATACTGTGAACGTATATAAATTAAATTTACCTCTTTATAACTCCATAACCATGACAACCAACAACTAAAACAGAGGCATGAAGTTTCTCTACAGCTTCACAAAGGACATGCCTAGCATCACCTTCCACTATCTCAACTACAACATCATTCACCTACAAAATAGTACAAAAATATCAAATCACTACGTAAAAATGATTTTTTTAAACCTTTTTTTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTGATGAAGTATCATTGATTGTTTAGATTCTTTACTTTTTAGTATACCACTAGTATACGTTTTTTTTATGACCTTCTTTAAGATATGAAATATGCTTTACTTGATCAACAATTTTAAAAAAATAGAAAAAAA</genome_strand>
        <mrna_strand>ACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGCTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTAGTAGGGAGGTTGGTGTTTTATGCAACCATAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCCCTTTGAGAAATAGAATTGACTAGTTCACAGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-A-TCCCCAAAAAAAAA......................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247476" ref_strand="+" ref_description="SGN-E247476 [cLEG-3-M21]">
      <seq>aaaaagctaaggagatatgcaaagaaaaatctgtgaatgatgttgtagttgagatagtggaaggtgatgctaggcatgtcctttgtgaagctgtagagaaacttcatgcctctgttttagttgttggttgtcatggttatggagttataaagaggactgttttgggtagtgtaagtgactactgtgctcatcatgcccactgcagtgtgatgattgtgaagaagccaaagactaaagcttaaattgtttctacttggcatttgatttgttgtgttgtcctagtgaataagattacaaatatgtgatctgtttcttcaactccaggaggaaaggaaaagaaaagaaactcatttgtttgtgtatttatttgatttctgcactcagtatctatatattacaaggctgtggtggttgtgtaacaaaacaaatactttagggtcttgtgtagtgttaatcacaatcttcatgtataaaataaaagactaaatgcagtgtatggagctccaagttatcctcctcataaatatatcaggttgtccacgagaattattagtagtatagaaacttgatatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="+" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15814" stop="17803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16114" g_stop="16235" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="154" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16236" i_stop="17080" i_length="845">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17081" g_stop="17503" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="577" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="+" ref_id="SGN-E247476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16114" e_stop="16235"/>
          <exon e_start="17081" e_stop="17503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGATGTTGTAGTTGAGATAGTGGAAGGTGATGCTAGGCATGTCCTTTGTGAAGCTGTAGAGAAACTTCATGCCTCTGTTTTAGTTGTTGGTTGTCATGGTTATGGAGTTATAAAGAGGTAAATTTAATTTATATACGTTCACAGTATAAATAGCTTGTTTATATTTCTAATTAACGAGCAATTCTCGATGGTAATTCTAGTGTTGTTGATCTTTCCTACTATAACATGTTGGTTTCAATTTTTATCAGGATTAACATTTACTATGTTGGTTTTTGGACGATGGCCTTATAGATGATCTGACCTTAGATTAGATAGAAGAGCATGAAGGTCGAGAATTAGGGTAGAAAGTTAGTGAATAGTCGAGCAATTTCTCTTGAAAGAGTGTGGCTCTAGTTGGAGTACCCATTTTGCTCCCTCTTCTCCTTATCATTGCTACTACTAATATTATTTGTCTTACTATTTTTTCTTTTCCTTGGCATTTTCATCAATGCTTCTTCTGTCTTATATTTTTCAAACTTGTTTTCGAAAGATCTTTTTAGCTGAGTGTATCAAAAAACAATCCCTATACCTTGCACAATGTGGGGTTAACGTCTATATATTAGGCCCCTTCCCTTCTCTTTTGGATGAATGGGGTGATTTAGAAGGTGCTTCCCGATCTATAGTCCCTCGAAACGAAGGGTTAGGCAGGTAGTATGGGCCCTCTGACTTCCAGTTATGTGTTGTGCCGCTCCGGCGAAGAAAATGAAGGGAAGTTGTTCGAGCTTCCGAGTGGACTTACGCTTTACTCTTACTCTTAGCCTCTTTTCTACCCTCCTAAAGTCCGACTTGTGAGATCTCATTGGGCATGTTGGTGTCGTTGTTGTTGACTTTATAGGTGGTCTGATTGCATATAAATTTATTTACACCTTCAATGCTTAGAACAAGAACTTGTTTTTGTGCTAAACACATTATTGATTGTGCAGGACTGTTTTGGGTAGTGTAAGTGACTACTGTGCTCATCATGCCCACTGCAGTGTGATGATTGTGAAGAAGCCAAAGACTAAAGCTTAAATTGTTTCTACTTGGCATTTGATTTGTTGTGTTGTCCTAGTGAATAAGATTACAAATATGTGATCTGTTTCTTCAACTCCAGGAGGAAAGGAAAAGAAAAGAAACTCATTTGTTTGTGTATTTATTTGATTTCTGCACTCAGTATCTATATATTACAAGGCTGTGGTGGTTGTGTAACAAAACAAATACTTTAGGGTCTTGTGTAGTGTTAATCACAATCTTCATGTATAAAATAAAAGACTAAATGCAGTGTATGGAGCTCCAAGTTATCCTCCTCATAAATATATCAGGTTGTCCACGAGAATTATTAGTAGTATAGAAACTTGATATACATT</genome_strand>
        <mrna_strand>GTGAATGATGTTGTAGTTGAGATAGTGGAAGGTGATGCTAGGCATGTCCTTTGTGAAGCTGTAGAGAAACTTCATGCCTCTGTTTTAGTTGTTGGTTGTCATGGTTATGGAGTTATAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTGGGTAGTGTAAGTGACTACTGTGCTCATCATGCCCACTGCAGTGTGATGATTGTGAAGAAGCCAAAGACTAAAGCTTAAATTGTTTCTACTTGGCATTTGATTTGTTGTGTTGTCCTAGTGAATAAGATTACAAATATGTGATCTGTTTCTTCAACTCCAGGAGGAAAGGAAAAGAAAAGAAACTCATTTGTTTGTGTATTTATTTGATTTCTGCACTCAGTATCTATATATTACAAGGCTGTGGTGGTTGTGTAACAAAACAAATACTTTAGGGTCTTGTGTAGTGTTAATCACAATCTTCATGTATAAAATAAAAGACTAAATGCAGTGTATGGAGCTCCAAGTTATCCTCCTCATAAATATATCAGGTTGTCCACGAGAATTATTAGTAGTATAGAAACTTGATATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220905" ref_strand="+" ref_description="SGN-E220905 [cLEL-22-A21](-)">
      <seq>tcttgtgactttgtaagttcttttcctgatgtgtgtctgttttcctgatgaattagggtcgtaggaaggttggtgttttatgcaaccttaagccctggtttgccggtgccatagggcagtcaccttttatctttgtgattgaaggatgtttatcccccatctgtgagttataaccctttcttatcccactttgagaaatagaattgactagttcacagagttatatccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18166" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17866" g_stop="17645" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="229" polyA_stop="246"/>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E220905" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17866" e_stop="17645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGGAGGTTGGTGTTTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGAAATAGAATTGACTAGTTCACAGAGTT</genome_strand>
        <mrna_strand>TCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGAAGGTTGGTGTTTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATCCCCCATCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGAAATAGAATTGACTAGTTCACAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348264" ref_strand="+" ref_description="SGN-E348264 [cTOF-27-K24]">
      <seq>tgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgtttcctgcaggtgaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaagttcttttcctgatgtgtgtctgttttcctgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18492" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18192" g_stop="17820" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="393"/>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E348264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18192" e_stop="17820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTG</genome_strand>
        <mrna_strand>TGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350954" ref_strand="+" ref_description="SGN-E350954 [cTOS-7-H24]">
      <seq>aggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgtttcctgcaggtgaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaagttcttttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18686" stop="17539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18386" g_stop="18304" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18193" g_stop="17839" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="438" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E350954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18386" e_stop="18304"/>
          <exon e_start="18193" e_stop="17839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTG</genome_strand>
        <mrna_strand>AGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345135" ref_strand="+" ref_description="SGN-E345135 [cTOF-22-B24]">
      <seq>ccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgtttcctgcaggtgaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaagttcttttcctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18673" stop="17538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18373" g_stop="18304" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18193" g_stop="17839" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="425" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E345135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18373" e_stop="18304"/>
          <exon e_start="18193" e_stop="17839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTG</genome_strand>
        <mrna_strand>CCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554369" ref_strand="-" ref_description="SGN-E554369 [cTSC-4-B18]">
      <seq>ggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagccccgaaccacgcaattccaggaggagccccagcaggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgtttcctgcaggtgaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21062" stop="17551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20762" g_stop="20707" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="189" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18578" g_stop="18304" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="464" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18193" g_stop="17850" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="808" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E554369" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554369" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20762" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18304"/>
          <exon e_start="18193" e_stop="17850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAG</genome_strand>
        <mrna_strand>GGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224349" ref_strand="+" ref_description="SGN-E224349 [cLEL-19-O12](-)">
      <seq>tgttggtgtaatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggatatttgcagattttgttatttgtttcctgcaggtaaaatgctacttatgtaatgacattgtctgcactcttgtgactttgtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18409" stop="17551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18109" g_stop="17851" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="280"/>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E224349" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18109" e_stop="17851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAA</genome_strand>
        <mrna_strand>TGTTGGTGTAATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTAAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208084" ref_strand="+" ref_description="SGN-E208084 [cLEC-34-L11]">
      <seq>caaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagccccgaaccacgcaattccaggaggagccccagcaggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaattgaaaattatgtcttggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18874" stop="17632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18574" g_stop="18304" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18193" g_stop="17932" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="533" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E208084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18574" e_stop="18304"/>
          <exon e_start="18193" e_stop="17932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATA</genome_strand>
        <mrna_strand>CAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542930" ref_strand="+" ref_description="SGN-E542930 [TUS-64-H19](-)">
      <seq>gttttctcttggggatggtgaaatggtaacgggtttctgcatgtctactttgatattggccactccgacgtggaagtggcatcaaggcagtcggatgaaagttgttaagcggaaggttggatattaaattgagttgtttctggacattttgcagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagccccgaaccacgcaattccaggaggagcccctgcaggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgatggcaaaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19238" stop="17646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18938" g_stop="18751" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18578" g_stop="18304" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="463" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18193" g_stop="17941" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="716" r_length="253" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E542930" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18938" e_stop="18751"/>
          <exon e_start="18578" e_stop="18304"/>
          <exon e_start="18193" e_stop="17941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATG</genome_strand>
        <mrna_strand>GTTTTCTCTTGGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATATTGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCTGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336629" ref_strand="+" ref_description="SGN-E336629 [cTOE-4-H7]">
      <seq>ccatctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagccccgaaccacgcaattccaggaggagccccagcaggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttttggtccatgaccaaaatagaactcaactgtgaacctttgacttggggaagactgcagtattctagtattttaagcaactttgcagcatgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18878" stop="17661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18756" g_stop="18751" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18578" g_stop="18304" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="281" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18193" g_stop="17961" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="514" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E336629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18756" e_stop="18751"/>
          <exon e_start="18578" e_stop="18304"/>
          <exon e_start="18193" e_stop="17961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGAT</genome_strand>
        <mrna_strand>CCATCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729889" ref_strand="+" ref_description="SGN-E729889 [LA22BF08]">
      <seq>cagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagccccgaaccacgcaattccaggaggagccccagcaggagcaaaagccccaaaccacgcaattccaggagaagccctagcaggagccgcagccggagtcgcagtgggagtttgtcgaggtgagagctatattgtggattaagctgttgctgcaggtgcggagatagagagtgtgctgctgtgcctgaatagagcagctgagctgttggtgtcatcttttccgataactagtcctgatgaatggcttctgaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23734" stop="17756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23434" g_stop="23412" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="81" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="131" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="188" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="295" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="394" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="428" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18578" g_stop="18304" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="703" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18193" g_stop="18056" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="841" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E729889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23434" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18304"/>
          <exon e_start="18193" e_stop="18056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAGGTCTTCTTGCTCATCTGTTTTTTTTTTTGTAGATTAATGAACAGTCATCCAGTTGCTTGAGGCATAACATATCATTGCTATTTTGTTGACTATTGATTACAATTTTACAGGTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTT</genome_strand>
        <mrna_strand>CAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG..............................................................................................................GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201707" ref_strand="+" ref_description="SGN-E201707 [cLEC-11-A11]">
      <seq>tatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcatccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctggctcttctcagccccgttctgggttaaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccgtctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcgtgagtaaaagccccgaaccacgcaattccaggaggagccccagcaggagcaaaagccccaaaccacgcaattccaggagaagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21284" stop="18045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21102" g_stop="21097" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="63" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="170" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="269" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="303" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18578" g_stop="18345" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="537" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E201707" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21102" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCT</genome_strand>
        <mrna_strand>TATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCATCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGGCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCGTCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCGTGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274214" ref_strand="+" ref_description="SGN-E274214 [cLEN-8-L2]">
      <seq>cttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtgtgagcaaaagcccaaaacctcgcgactccaggagaagccagagcttgagtaaaagcccaaaacctcgtgattccaggagaagcgagagtccaagcaagagccccaaactgcgtgattccaggagaagcaagagcatgagtaaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21275" stop="18119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20975" g_stop="20928" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="155" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="254" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="288" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18578" g_stop="18419" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="448" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E274214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20975" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCC</genome_strand>
        <mrna_strand>CTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320480" ref_strand="+" ref_description="SGN-E320480 [cTOB-22-N16]">
      <seq>tgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtncagatctccatcaagatccagatccccagtaccatctcgcccaagacgtgtgagcaaaagccccaaaccacgcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24584" stop="18238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24380" g_stop="24370" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="279" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="326" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="384" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="434" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="491" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="598" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="697" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="731" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="18578" g_stop="18538" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="772" r_length="41" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E320480" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24380" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTC</genome_strand>
        <mrna_strand>TGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTNCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAGACGTGTGAGCAAAAGCCCCAAACCACGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705649" ref_strand="+" ref_description="SGN-E705649 [FA27DA06]">
      <seq>cttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25592" stop="18451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25292" g_stop="25244" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="138" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="204" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="279" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="406" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="453" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="511" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="561" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="618" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="725" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20618" g_stop="20520" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="823" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="18784" g_stop="18751" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="857" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="18578" g_stop="18566" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="870" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E705649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25292" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20520"/>
          <exon e_start="18784" e_stop="18751"/>
          <exon e_start="18578" e_stop="18566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGCTTCTTGTGACTTTTGCATTTTGGAAATGTCGGGAAAATATTCTGTGTTGTCAAGGTATCATTTATTATTTCCTTTGTAAATATGAGAAATCACATTGTTGGTTTTTCTAGATGTTGGATTTATACGAGGATCTTGGAATGCATATTAGGATCTTGAGTGGATATGGTCTTGCCTACAACAAATGTTGTTGTGGAGGTATGCTGTTTTCTAGATGGCAGCTTCGGAATCTTTTATGGTGTCTCTCCTCTAATGAGCATCATGAAATGTCCATCGATGCTAAGATTGGGAACAAGAAGATCATGGATTTTGATGGTCAAGCTGGAGTGGCATACTAGAACTTCACTTTGAATTTGGGATCGCCATCTGGCAAGCTAATAAGACACTAATTGGTTCTTTCACTTCCTGTTAATTGGTCTTTAAACAACACAAACTTAAATTATTGACTAGAACTCTTCCTTAACTAGGTAACTTGCATGGCTTCATACTTGTCATTGTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCTGTAAGTCAAATGACTCTTCTAAGATAAAAATGAAAGCTTGGAATTATTGTATCTGGCGGTAGAACTATTTTGTCTTATTACATTTGTATTAAGTTATTTGAATTACATTCTTTTTTACTTCGAATCCTCTCTTTGTTTGTTGGCATTTTATATTTGGCTGGATTGGTCTCAGCGCCCAAAACGTG</genome_strand>
        <mrna_strand>CTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTT-AAAGGACGCTCTTTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGATCCAGATCCCCAGTACCATCT............................................................................................................................................................................CGCCCAAAACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270899" ref_strand="+" ref_description="SGN-E270899 [cLEM-6-L9]">
      <seq>aacattaaagttctgatccctcattcagtttggatcaatatcgtccttccaaaattgtaagtgaaccttttggaaatttgtcaagattctagatcaacgtgcaatggctcagtgggtaactaagctgtcattagctaatatggtgctcgtattgtagttttaataggctttatattatggtgaggtacaattctgcatcttttttggtggcatagagatagccaatgttaatttcattctgcttcaaggtgtctccgtccaaaaaaacccagtctgcttcaaggtgatagatctttttgaacctaagcaatgtcaaaccatttgataaaccagacaagctagggaacatcacaagtgcagagtcctgtacatcaggattgttcttcttcttctaattatgctgtgtctaactgtaattgcggctatcaaatatgtggtcaactggtcattcagttatgaaaagatgtctagatactgcatttcagaatccattaggaacaaaatagttgttgggtgttggatgtagaagttggttcttcctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20276" stop="19132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19976" g_stop="19432" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E270899" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19976" e_stop="19432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGC</genome_strand>
        <mrna_strand>AACATTAAAGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAAGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAAGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542931" ref_strand="+" ref_description="SGN-E542931 [TUS-64-H19]">
      <seq>accaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttcttactggtcatatctacccattttgttgttggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatttatttagtgggaaatcagctgagcactttgtttccaacccttaatcttgactagactttgtatagttgtggacatgagatggctttgaagcaaaaagttgttttgcagtgtgaccaatttaacattttcacacaagttgggttgtaaatttcacaaattcaaattgcaaattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21423" stop="19826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21123" g_stop="21097" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="191" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20618" g_stop="20126" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="685" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E542931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21123" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTT-GGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</genome_strand>
        <mrna_strand>ACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303030" ref_strand="+" ref_description="SGN-E303030 [cLEW-26-K22]">
      <seq>ccaactatgacgacatgaaatagggtataataaaacttgatgaatctgagttcccgaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgccaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttattactggtcatatctacccattttgttgaaggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatatatttagtgggaaatcacctgagcactttgtttccaacccttaatcttgactaaactttgtataggtgtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21422" stop="19926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21122" g_stop="21097" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="83" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="190" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20618" g_stop="20226" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="583" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E303030" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21122" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATG</genome_strand>
        <mrna_strand>CCAACTATGACGACATGAAATAGGGT................................................................................................................ATAATAAAACTTGATGAATCTGAGTTCCCGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGCCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTATTACTGGTCATATCTACCCATTTTGTTGAAGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATATATTTAGTGGGAAATCACCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAAACTTTGTATAGGTGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727772" ref_strand="+" ref_description="SGN-E727772 [LA15CG09]">
      <seq>cgaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25599" stop="20248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25301" g_stop="25244" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="147" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="213" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="288" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="415" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="570" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="627" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20813" g_stop="20707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="734" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20618" g_stop="20548" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="805" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E727772" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25301" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20707"/>
          <exon e_start="20618" e_stop="20548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTT</genome_strand>
        <mrna_strand>CGAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316156" ref_strand="+" ref_description="SGN-E316156 [cTOA-23-A23]">
      <seq>ccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25593" stop="20445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25293" g_stop="25244" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="139" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="280" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="407" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="454" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="512" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="562" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20984" g_stop="20928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="619" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20813" g_stop="20745" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="688" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E316156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25293" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20928"/>
          <exon e_start="20813" e_stop="20745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGT</genome_strand>
        <mrna_strand>CCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314227" ref_strand="+" ref_description="SGN-E314227 [cTOA-21-G12]">
      <seq>aattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25599" stop="20652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25299" g_stop="25244" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="145" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="211" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="413" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="460" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="518" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21146" g_stop="21097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="568" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20984" g_stop="20952" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="601" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E314227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25299" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21097"/>
          <exon e_start="20984" e_stop="20952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAAT</genome_strand>
        <mrna_strand>AATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205241" ref_strand="+" ref_description="SGN-E205241 [cLEC-25-B23]">
      <seq>tccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25594" stop="20813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25294" g_stop="25244" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="140" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="408" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="455" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="513" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21146" g_stop="21113" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="547" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E205241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25294" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
          <exon e_start="21146" e_stop="21113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGA</genome_strand>
        <mrna_strand>TCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349024" ref_strand="+" ref_description="SGN-E349024 [cTOF-29-F10]">
      <seq>aaaaccctaaccttcaaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25616" stop="22947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25316" g_stop="25244" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="162" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="430" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="477" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="535" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E349024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25316" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG</genome_strand>
        <mrna_strand>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331080" ref_strand="+" ref_description="SGN-E331080 [cTOD-6-I24]">
      <seq>ttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25573" stop="22961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25273" g_stop="25244" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="119" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="185" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="260" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="387" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="434" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23261" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="478" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E331080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25273" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTT</genome_strand>
        <mrna_strand>TTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207746" ref_strand="+" ref_description="SGN-E207746 [cLEC-32-E4]">
      <seq>ttcaaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25604" stop="22981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25304" g_stop="25244" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="150" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="291" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="418" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="465" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23281" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="489" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E207746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25304" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGAT</genome_strand>
        <mrna_strand>TTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291630" ref_strand="+" ref_description="SGN-E291630 [cLET-6-J16]">
      <seq>caaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25602" stop="23108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25302" g_stop="25244" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="148" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="214" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23540" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="416" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23412" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="463" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23304" g_stop="23293" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="475" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E291630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25302" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23540"/>
          <exon e_start="23458" e_stop="23412"/>
          <exon e_start="23304" e_stop="23293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGT</genome_strand>
        <mrna_strand>CAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337525" ref_strand="+" ref_description="SGN-E337525 [cTOE-11-L2]">
      <seq>tgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25575" stop="23324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25275" g_stop="25244" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="121" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24282" g_stop="24217" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="187" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24119" g_stop="24045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="262" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23666" g_stop="23624" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="305" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E337525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25275" e_stop="25244"/>
          <exon e_start="24458" e_stop="24370"/>
          <exon e_start="24282" e_stop="24217"/>
          <exon e_start="24119" e_stop="24045"/>
          <exon e_start="23666" e_stop="23624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATC</genome_strand>
        <mrna_strand>TGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285787" ref_strand="+" ref_description="SGN-E285787 [cLES-5-K16]">
      <seq>gagaactagtctcgagttttttttttttttttttttttttttttttttttttttttttttttttttttttttggtaaggggaaacacttattttatgacctatacaaggcacaaaatgaaagggcaatggaggttcaaaaaagtacaagtgggtttacccatacccccccccaaaaaattcaataaaaagagaacgttttacgatacaacaaacacttgacttacaaacaaggatgaaggataggaaggaaaaaaaagagccccccccaaagcaaaaaggttccaaaaggagggttacttggggcctatatttattaacctactagtaatacataggccatattttgctcctcagtctacgagggattagcagccatttccaactattggtccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="+" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10511" stop="28620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25965" g_stop="26031" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26032" i_stop="27990" i_length="1959">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.595" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27991" g_stop="28320" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="397" r_length="330" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="+" ref_id="SGN-E285787" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25965" e_stop="26031"/>
          <exon e_start="27991" e_stop="28320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATATGAAAAATATAGTGTGCGTAAATTTTATCCTTAATTTTTAAGAAATACTAACACTATTTTGAATTGACCTTCAACTAAAAATAAAAATATTAATAACTAGGCCAATTAGTACTCTCTTGTTGTATAAAATCAATATGATTCACATTTTTTTAAATCTGTCTGTAAAAAAAAAGATACCTTTTTAATATTTAGTATAATTTAATTTTAAAATGCTCATTTTAATATTAATGAAACAATTTATAATAAAAAATACTTTAATTTATTTTAAATCACAAATTTTATAAATCTTTTTTTACTTCTTTCTTAAATTTCATCTTAAATCAAATTACATAATATAAACAAAAAATCAAGAAAGTAACAAAGAAAGTTGAAAAAGAGCAAGCTGACTAACAAAGGTTCATGTCACTTAATTAATAGGGGCCACCTACATGTATTGGTTCTTTTGTTCAAGAATTCTTTATTTCGTCACCATTATAATTAAATGAGCGTAACGATTCAAAGTTAGTCAAGACTTAAAATAACGATATAAAGTTAGTCAAGTTTAAACGTAAACTTCAAACATGAAGCAAAAAACTAATTTTTCTTTTCGAGGACAACTAACTTAGTTTACTAAATTGTGTATAAAGTTGGTAATAGACTCCAACAAGAACAAGTTCTACCATACTTCAAGTATTTTAAAAGAATAAGTACAAAAATATAGAGTACATATAAACTAGGAGTCAATGATGAGAGTACAATTTTAAATGCATTCAACATTGCTAAAAAATTGCAAGTGGTGTTGTGCTGTCTACACTATTTTAATTTAGAAAAAAAACATAAAAATTTTCCTCAATTTGTTTGCATAATTTATTTTAACACTTTAATTTTATGGATAATTATTTGCTCCCCTTAACTCATTTTAAATAAACTTAATATTACCTTAACAGATGACGTGATAAAAAAAAAAGCAAAAAAATTGAAGGCGGATATTTTCTTTTTGAAAAAAAAGGTTCCACTATATTATAATGAAAACAAAAAACAAAAAACAAAAACCCACAACCCCATTGTTCTTCTTCTTCAAATTCCTCTACCCCTTTCTCAAAACCCCCATATCCGTGCTTGTTTCTTCTTCTTGAAACTCCCAAGTCTCACCACATCCTATCCCAACATCGACCCATCCTCTTTCTCTTCATCAAACTCTACATTCTATATATTTTTTGGCTATACAAAAATAGAAAATCACATTTAAGCCCCACATAATATTCTTTATTCTTTACTTTTGAGATTTGATTTTCCTTAACAAAATAATTATTTATTTAACTATAATGTTACTTAATCTATACCTGAATATGGATTAAGAAATGAAATAACTAAATCAACAACTAATCAAAAAAATTAGCATATCAATTTTACATAAATTTAAAATCGCCATATCGATATGAATTGATAGTTTCATCTAGTTGGGAAAAAAAATATGGTGACTGATATAAGTATTGATGGAAGTAATAGTAAATAATTACAAAATAATAAAAAATAAAAGGAATCAATCAATATTAAATTTTGAATCTTAAGAAATTGACCCAAGTGAAATGAAGAGCATAGGTGAAGAGTGAAAAATAAATTATTTAAAAGATGTGGAAAAGTAAAAAAAATAAAAAAATAATTATATGACATGTCATCAATATGAAACTGAGATTTTACTTAGTAGAGCGCGTGCACTTCACCCATAATATGAAACTGATATTGTATAGATAAGATGCAATTTAATTCACTTGAAAAAAAATTAAGGAGCAAATAATTACCTATAAAATTATAATATTAAAGCGAATTTTGCTGCCGAGACAAATTTTATGCTTTTAGTCTGTAATTCATAAAGATTTTCACCTTTTTGAATTTGGACAATGCTTGTTAACTTTGAATACCCAACATTAAATTGAGTAAAATATTTCAAATGTGATTGATTGTTGCAATGTCCAGAATTTGTTAATGGTAAACACTTATTTTATGACCTATACAAGGCACAAAATGAAAGTGCAATGTAGGTTCAAAAAAGTACAAGTCGGCTTACGCATACGCGCACACAAAAAATTCAATAAAAAGAGAACGTCTTACGATACAACAAACACTTGACTCACAGACAAGGATGAAGGATAGGAAGGAAAAAAAAGAGCACACCACAAAGCAAAAAGGTTACAAAAGGAGTGTTACTTGTGGCCTATATTTATTAACCTACTAGTAATACATAGGCCATATTTTGCTCCTCAGTCTACGAGGTATTAGCAGCCATTTCCAACTATTGTTCCCCCT</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAGGGGAAACACTTATTTTATGACCTATACAAGGCACAAAATGAAAGGGCAATGGAGGTTCAAAAAAGTACAAGTGGGTTTACCCATACCCCCCCCCAAAAAATTCAATAAAAAGAGAACGTTTTACGATACAACAAACACTTGACTTACAAACAAGGATGAAGGATAGGAAGGAAAAAAAAGAGCCCCCCCCAAAGCAAAAAGGTTCCAAAAGGAGGGTTACTTGGGGCCTATATTTATTAACCTACTAGTAATACATAGGCCATATTTTGCTCCTCAGTCTACGAGGGATTAGCAGCCATTTCCAACTATTGGTCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389536" ref_strand="+" ref_description="SGN-E389536 [TUS-4-F15](-)">
      <seq>atatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaattcttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattttaaatttatgtaaaattgatatgctaatttttttgattagttgttgatttagttatttcatttcttaatccatattcaggtatagattaagtatcattatagttaaataaataattattttgttaaggaaaatcaaatctcaaaagtaaagaataaagaatattatgtggggcttaaatgtgattttctatttttgtatagccaaaaaatatatagaatgtagagtttgatgaagagaaagaggatgggtcgatgttgggataggatgtggtgagtcttggatagtttcaagtaggagaaacaagcacggatatgggggttttgagaaacgggcagaggtatttgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28057" stop="26787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27757" g_stop="27087" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E389536" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27757" e_stop="27087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGG-GAGTTTCAAGAAGAAGAAACAAGCACGGATATGGGGGTTTTGAGAAAGGGGTAGAGGAATTTGAAGAA</genome_strand>
        <mrna_strand>ATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATTCTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTATCATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGTCTTGGATAGTTTCAAGTAGGAGAAACAAGCACGGATATGGGGGTTTTGAGAAACGGGCAGAGGTATTTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389796" ref_strand="+" ref_description="SGN-E389796 [TUS-4-F15]">
      <seq>acaatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattttaaatttatgtaaaattgatatgctaatttttttgattagttgttgatttagttatttcatttcttaatccatattcaggtatagattaagtaacattatagttaaataaataattattttgttaaggaaaatcaaatctcaaaagtaaagaataaagaatattatgtggggcttaaatgtgattttctatttttgtatagccaaaaaatatatagaatgtagagtttgatgaagagaaagaggatgggtcgatgttgggataggatgtggtgagacttgggagtttcaagaagaagaacaagcacggatatgggggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28060" stop="26813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27760" g_stop="27113" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E389796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27760" e_stop="27113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGGGAGTTTCAAGAAGAAGAAACAAGCACGGATATGGGGGTTTTG</genome_strand>
        <mrna_strand>ACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGGGAGTTTCAAGAAGAAG-AACAAGCACGGATATGGGGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375129" ref_strand="+" ref_description="SGN-E375129 [TUS-36-O23]">
      <seq>caatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattttaaatttatgtaaaattgatatgctaatttttttgattagttgttgatttagttatttcatttcttaatccatattcaggtatagattaagtaacattatagttaaataaataattattttgttaaggaaaatcaaatctcaaaagtaaagaataaagaatattatgtggggcttaaatgtgattttctatttttgtatagccaaaaaatatatagaatgtagagtttgatgaagagaaagaggatgggtcgatgttgggataggatgtggtgagacttgggagtttcaagaagaaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28059" stop="26832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27759" g_stop="27132" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E375129" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27759" e_stop="27132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGGGAGTTTCAAGAAGAAGAAACAAG</genome_strand>
        <mrna_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGGGAGTTTCAAGAAGAAAAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231883" ref_strand="+" ref_description="SGN-E231883 [cLED-7-F13]">
      <seq>caatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattttaaatttatgtaaaattgatatgctaatttttttgattagttgttgatttagttatttcatttcttaatccatattcaggtatagattaagtaacattatagttaaataaataattattttgttaaggaaaatcaaatctcaaaagtaaagaataaagaatattatgtggggcttaaatgtgattttctatttttgtatagccaaaaaatatatagaatgtagagtttgatgaagagaaagaggatgggtcgatgttgggataggatgtggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28059" stop="26862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27759" g_stop="27162" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E231883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27759" e_stop="27162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGA</genome_strand>
        <mrna_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240977" ref_strand="+" ref_description="SGN-E240977 [cLED-24-J11]">
      <seq>gagacaatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattataaatttatgtaaaattgatatgctaatttttttgattagttggtgatttagctatttcatttcttaatccatattcaggtatagattaagtaacattatagctaaataaataattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28062" stop="27017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27763" g_stop="27317" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E240977" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27763" e_stop="27317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATT</genome_strand>
        <mrna_strand>GAGACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTATAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGGTGATTTAGCTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGCTAAATAAATAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376972" ref_strand="+" ref_description="SGN-E376972 [TUS-20-M13]">
      <seq>caatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttaatttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatattttttttcccaactagatgaaactatcaattcatatcgatatggcgattttaaatttatgtaaaattgatatgctaatttttttgattagttgttgatttagttatttcatttcttaatccatattcaggtatagattaagtaacattatagttaaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28059" stop="27024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27759" g_stop="27324" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E376972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27759" e_stop="27324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAAT</genome_strand>
        <mrna_strand>CAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTAATTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550317" ref_strand="+" ref_description="SGN-E550317 [TUS-5-F27]">
      <seq>acaatatcagtttcatattatgggtgaagtgcacgcgctctactaagtaaaatctcagtttcatattgatgacatgtcatataattatttttttattttttttacttttccacatcttttaaataatttatttttcactcttcacctatgctcttcatttcacttgggtcaatttcttaagattcaaaatttaatattgattgattccttttattttttattattttgtaattatttactattacttccatcaatacttatatcagtcaccatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28060" stop="27183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27760" g_stop="27483" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E550317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27760" e_stop="27483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTT</genome_strand>
        <mrna_strand>ACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285304" ref_strand="+" ref_description="SGN-E285304 [cLER-20-O3]">
      <seq>ttcgatgctaggcctcatgttagcgcttgggttgctgatattttggcttggccagcttggtctaagacaattgagttgtcgaaacagtaagtttagtggcggatgggtgagtatcgcgtagaaaggaagggggaacagtagttggaaatggctgctaatacctcctagactgaggagcaaaatatggcctatgtattactagtaggttaataaatataggccacaagtaacactccgttttgtaacctttttgctttgtggtgtgctctttttctttccttcctatccttcatccttgtctgtgagtcaagtgtttgttgtatcgtaagacgttctctttttattgaattttttgtgtgcgcgtatgcctaagccgacttgtacttttgtgaacctacattgcactgttatttcgtgccttgtataggtcataaaataagtgtttaccattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28747" stop="27693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28447" g_stop="27992" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E285304" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28447" e_stop="27992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCC-TTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTT-TTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAAATAAGTGTTTACCATTAACAAAT</genome_strand>
        <mrna_strand>TTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTTGGCCAGCTTGGTCTAAGACAATTGAGTTGTCGAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTAGAAAGGAAGGGGGAACAGTAGTTGGAAATGGCTGCTAATACCTCCTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCGTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTCTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCCTAAGCCGACTTGTACTTTTGTGAACCTACATTGCACTGTTATTTCGTGCCTTGTATAGGTCATAAAATAAGTGTTTACCATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292812" ref_strand="+" ref_description="SGN-E292812 [cLET-11-K5]">
      <seq>tagactgaggagcaaaatatggcctatgtattactagtaggttaataaatataggccacaagtaacactccttttgtaacctttttgctttgtggtgtgctcttttttttccttcctatccttcatccttgtctgtgagtcaagtgtttgttgtatcgtaagacgttctctttttattgaattttttgtgtgcgcgtatgcgtaagccgacttgtacttttttgaacctacattgcactttcattttgtgccttgtataggtcataaaataagtgtttaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28582" stop="27699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28282" g_stop="27999" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E292812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28282" e_stop="27999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAAATAAGTGTTTACCATT</genome_strand>
        <mrna_strand>TAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAAATAAGTGTTTACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371753" ref_strand="+" ref_description="SGN-E371753 [TUS-30-I21]">
      <seq>ctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaatagcttgctcgatgctacgcctcatgttagcgcttgggttgctgatattttggctaggccaccttggtctaagacaattgagttgtcaaatcagtaagtttattggcggatgggtgagtatcgcgtagaaaggaagggggaacaatatttggaaatggctgctaatacctcgtagactgaggagcaaaatatggcctatgtattactagtaggttaataaatataggccacaagtaacactccttttgtaacctttttgctttgtggtgtgctctttttttttcttcctatccttcatccttgtctgtgagtcaagtgtttgttgtatcgtaagacgttctctttttattgaattttttgtgtgcgcgtatgcgtaagccgacttgtacttttttgaacctacattgcactttcattttgtgccttgtataggtcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28806" stop="27715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28506" g_stop="28015" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E371753" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28506" e_stop="28015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAA</genome_strand>
        <mrna_strand>CTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAATAGCTTGCTCGATGCTACGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCACCTTGGTCTAAGACAATTGAGTTGTCAAATCAGTAAGTTTATTGGCGGATGGGTGAGTATCGCGTAGAAAGGAAGGGGGAACAATATTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTTCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212661" ref_strand="+" ref_description="SGN-E212661 [cLEC-73-M1]">
      <seq>agatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaggaagggggaacaatagttggaaatggctgctaatacctcgtagactgangagcaaaatatggcctatgtattactagtaggttaataaatataggccacaagtaacactccttttgtaacctttttgctttgtggtgtgctcttttttttccttcctatccttcatccttgtctgtgagtcaagtgtttgttgtatcgtaagacgttctctttttattgaatttttgtgtgcgcgtatgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29581" stop="27779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29281" g_stop="29265" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28079" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="741" r_length="724" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E212661" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29281" e_stop="29265"/>
          <exon e_start="28803" e_stop="28079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTA</genome_strand>
        <mrna_strand>AGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGANGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAA-TTTTTGTGTGCGCGTATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266436" ref_strand="-" ref_description="SGN-E266436 [cLEI-3-B22]">
      <seq>ctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagatgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtttaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgtttaaaggaagggggaacaatagttggaaatggctgctaatacctcgtagactgaggagccatatatggcctatgtattgctagtaggttaataaatataggccacaagtaacactccttttgtaacctttttgctttgcggtgtgctcttttttttccttcctatccttcatccttgtctgtgagtcaagtgtttgttgtatcgttagacgttctctttctattgaattttttgtgtcaaaaaccaaaaaaaaaaaaaataaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28854" stop="27792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28554" g_stop="28092" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="494"/>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E266436" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266436" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28554" e_stop="28092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGT</genome_strand>
        <mrna_strand>CTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGATGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTTTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTTAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCCATATATGGCCTATGTATTGCTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGCGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTTAGACGTTCTCTTTCTATTGAATTTTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264641" ref_strand="+" ref_description="SGN-E264641 [cLEG-72-O6]">
      <seq>gaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaggaagggggaacaatagttggaaatggctgcntatacctcgtagactgaggagcaaaatatgggctatgtattactagtaggntaataaatataggccacaagtaacactccttttgtaactttttgctttgtggtgtgctcttttttttcctcctatccttcatccttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29589" stop="27849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29265" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28149" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="678" r_length="653" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E264641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29265"/>
          <exon e_start="28803" e_stop="28149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCT</genome_strand>
        <mrna_strand>GAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCNTATACCTCGTAGACTGAGGAGCAAAATATGGGCTATGTATTACTAGTAGGNTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAA-CTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCC-TCCTATCCTTCATCCTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259186" ref_strand="+" ref_description="SGN-E259186 [cLEG-43-I19]">
      <seq>gtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaacccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaggaagggggaacaatagttggaaatggctgctaatacctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29611" stop="27982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29311" g_stop="29265" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28282" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="570" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E259186" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29311" e_stop="29265"/>
          <exon e_start="28803" e_stop="28282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAA-CCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGT</genome_strand>
        <mrna_strand>GTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256779" ref_strand="+" ref_description="SGN-E256779 [cLEG-40-M13]">
      <seq>agcttttgaagatggagatttaaagctttttgagtcaagagctatgggacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaggaagggggaacaatatttggaaatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29596" stop="27995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29296" g_stop="29265" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28295" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="541" r_length="509" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E256779" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29296" e_stop="29265"/>
          <exon e_start="28803" e_stop="28295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCT</genome_strand>
        <mrna_strand>AGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATGGGACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATATTTGGAAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256887" ref_strand="+" ref_description="SGN-E256887 [cLEG-40-L18]">
      <seq>aaaaaggaaccattcatttctctaaatccgtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaaggaaggggaacaatagtttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29626" stop="27999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29265" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="76" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28299" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="582" r_length="506" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E256887" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29265"/>
          <exon e_start="28803" e_stop="28299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAG-TTGGAAAT</genome_strand>
        <mrna_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAAGGAAGGGGAACAATAGTTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259458" ref_strand="+" ref_description="SGN-E259458 [cLEG-42-G7]">
      <seq>ctaaatccgtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggccagcttggtctaagacaattgagttgtcaaaacagtaagtttagtggcggatgggtgagtatcgcgttgaaaggaagggggaacaatagttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29615" stop="28000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29265" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="55" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28300" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="559" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E259458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29265"/>
          <exon e_start="28803" e_stop="28300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAA</genome_strand>
        <mrna_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232940" ref_strand="+" ref_description="SGN-E232940 [cLED-6-E15]">
      <seq>gaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattttggctaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29589" stop="28095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29265" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28395" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="434" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E232940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29265"/>
          <exon e_start="28803" e_stop="28395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCC</genome_strand>
        <mrna_strand>GAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301792" ref_strand="+" ref_description="SGN-E301792 [cLEW-25-M2]">
      <seq>gcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgttagcgcttgggttgctgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29595" stop="28105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29295" g_stop="29265" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28405" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="430" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E301792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29295" e_stop="29265"/>
          <exon e_start="28803" e_stop="28405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTT</genome_strand>
        <mrna_strand>GCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337275" ref_strand="+" ref_description="SGN-E337275 [cTOE-7-J11]">
      <seq>aagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactcaaggaatcgaaatatttgggtggtgagagtttcaccctagctgatttgcaccacgccccgtctttgcactacttgtcggggagtaaagtgaagagcttgttcgatgctaggcctcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29603" stop="28127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29303" g_stop="29265" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28427" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="416" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E337275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29303" e_stop="29265"/>
          <exon e_start="28803" e_stop="28427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTT</genome_strand>
        <mrna_strand>AAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260129" ref_strand="+" ref_description="SGN-E260129 [cLEG-52-O1]">
      <seq>gtctaaatccgtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaagtagaagcccagaaattcgaccccattggttcaaaactagggtttgagattgtcattaagccaatgttgggcatggtgactgatgatgcagtcgtggcagagaacgaagagaaactcgggaaacttcttgatgtgtatgaatctagactccaggaatcgaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29620" stop="28230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29265" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="57" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28530" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="331" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E260129" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29265"/>
          <exon e_start="28803" e_stop="28530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTT</genome_strand>
        <mrna_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCCAGGAATCGAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263831" ref_strand="+" ref_description="SGN-E263831 [cLEG-74-N6]">
      <seq>cattcatttctctaaatccgtttggtcaagttccagcttttgaagatggagatttaaagctttttgagtcaagagctattacacaatacatagctcacacatatgcagacaaagggaaccaacttttacccaatgacccaaagaaaatggcagtcatgtctgtatggatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29626" stop="28397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29265" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="66" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28697" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="173" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E263831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29265"/>
          <exon e_start="28803" e_stop="28697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTGGTATGTTTCCCTTAGGATCATGATTGGCTAGAGATTGTTATTTTTTTTTATGTATAATATATATATTAATTTGAACCTCGTAAAATTAGTGGCTCCTCTAGTGGCGGACTCAGAATTTTTGATAAAAGTATGGGTTTATGATTTATTATATATACCTAAAAAATTATTTTAATCATGCGTATGTAATATGATTTCTCAACAAAGGGGGGTTTGGATGAATCTGGGACTCGTTGACTTAGTGGTTGAGGGTTTGAAAATTCAACTTGACCTTATTTAGACCTCGATTCTCGTTAATCTAAAGATAGAGAGGTTGTTTCTAACAGAGGTTCAGGATATAAGTACTATGGAATCTTGCTTCAATTCAATGAAAATCATCACATAATTGATATTGAATTTACTTGAAACACACTTATTTCTTTGGTTTTACGATGTTTGATATATGAATTATTGGGAAACTGCAGAGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAA</genome_strand>
        <mrna_strand>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49466" stop="48420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49166" g_stop="48720" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49166" e_stop="48720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCTTGGGAGAGAGACG-CTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAAGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49467" stop="47653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49167" g_stop="48846" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49167" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024L21-lVwb1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024L21.2" temp_strand="-" temp_description="C06HBa0024L21.2  AC211027.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0024L21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49467" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49167" g_stop="48862" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024L21.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024L21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49167" e_stop="48862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>60</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3682" PGL_stop="4235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3682" e_stop="4235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="3682" e_stop="4235" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3682" stop="4235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTAAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAACGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  K  E  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  N  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  S  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  T  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3683" stop="4234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGKEGENEQVQNEGLPPQPTPEMINQVLAYLNGLSDQGQTPPVFSAPAPQVSEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4405" PGL_stop="3686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4405" e_stop="3686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="4405" e_stop="3686" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4405" stop="3686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4402" stop="3739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGAAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGTTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCCTTACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  C  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  V  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  Y  L  F  I  L  P  F  L  T  L  S  Y  H  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  E  T  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  L  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  L  H  V  V  P  P  K  P  E  V  L  V  Q  K  T  L  E  V  S  G  P  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  V  L  V  H  S  P  L  P  Y  P  L  L  P  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4404" stop="4195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5331" PGL_stop="5001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5331" e_stop="5001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="5331" e_stop="5001" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5331" stop="5001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAATTTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCACGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  I  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  R  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  F  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  N  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  T  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024L21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="5031" PGL_stop="5654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5031" e_stop="5654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="5031" e_stop="5654" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5031" stop="5654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAAATTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAACCCGGTTCGTATTGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATATTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTAGATGTTTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATCGATCTTGAACCGAGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCTCAACTTCAAGAGTTAAAG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  K  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  I  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  S  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  K </first_frame>
            <second_frame>  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  L  N  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  T  R  F  V  L  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  *  M  F  F  P  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  L  N  F  K  S  *   </second_frame>
            <third_frame>   *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  *  I  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  P  G  S  Y  C  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  R  C  F  S  R  R  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  R  S  *  T  E  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  S  T  S  R  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5031" stop="5654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFANGLKLHCELLDMPIRVSTPVGESVIVEKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKRMVSKGCLAFLAHLRDDITQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPSTRPISIPPYRMAPAELRELKAQLQELK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="6078" PGL_stop="6852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6078" e_stop="6142"/>
            <exon e_start="6746" e_stop="6852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.870"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.870">
            <gDNA_exon_boundary e_start="6078" e_stop="6142" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6143" i_stop="6745" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="6746" e_stop="6852" e_length="107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6078" stop="6142"/>
              <exon start="6746" stop="6852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNATTTGGTCAGTTCCTGCTTTTGAAGATGGAGATCTCAAGCTTTTTG : AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCTGACAAGGGGAACCAACTCTTACCAAATGACCCAAAGAAAATGGCAATCATGTATGTATGGATTGAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  Y  L  V  S  S  C  F  *  R  W  R  S  Q  A  F  * :   V  K  S  Y  Y  T  I  H  S  S  H  I  C  *  Q  G  E  P  T  L  T  K  *  P  K  E  N  G  N  H  V  C  M  D  *  </first_frame>
            <second_frame>  F  F  F  F  F  F  I  W  S  V  P  A  F  E  D  G  D  L  K  L  F   : E  S  R  A  I  T  Q  Y  I  A  H  T  Y  A  D  K  G  N  Q  L  L  P  N  D  P  K  K  M  A  I  M  Y  V  W  I  E </second_frame>
            <third_frame>   F  F  F  F  F  L  F  G  Q  F  L  L  L  K  M  E  I  S  S  F  L  :  S  Q  E  L  L  H  N  T  *  L  T  H  M  L  T  R  G  T  N  S  Y  Q  M  T  Q  R  K  W  Q  S  C  M  Y  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024L21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="25316" PGL_stop="15803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25316" e_stop="25244"/>
            <exon e_start="24458" e_stop="24370"/>
            <exon e_start="24282" e_stop="24217"/>
            <exon e_start="24119" e_stop="24045"/>
            <exon e_start="23666" e_stop="23540"/>
            <exon e_start="23458" e_stop="23412"/>
            <exon e_start="23304" e_stop="23247"/>
            <exon e_start="21146" e_stop="21097"/>
            <exon e_start="20984" e_stop="20928"/>
            <exon e_start="20813" e_stop="20707"/>
            <exon e_start="20618" e_stop="20520"/>
            <exon e_start="18784" e_stop="18751"/>
            <exon e_start="18578" e_stop="18304"/>
            <exon e_start="18193" e_stop="17645"/>
            <exon e_start="16122" e_stop="16104"/>
            <exon e_start="15809" e_stop="15803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.429" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.723" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.298" e_score="0.684"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25316" e_stop="25244" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24458" e_stop="24370" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24282" e_stop="24217" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24119" e_stop="24045" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23666" e_stop="23540" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23458" e_stop="23412" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23304" e_stop="23247" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.926">
            <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21146" e_stop="21097" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20984" e_stop="20928" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.870" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20813" e_stop="20707" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.429">
            <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="20618" e_stop="20520" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.876">
            <gDNA_intron_boundary i_start="20519" i_stop="18785" i_length="1735"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="18784" e_stop="18751" e_length="34"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="18578" e_stop="18304" e_length="275"/>
          </exon>
          <intron i_serial="13" don_prob="0.723" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="18193" e_stop="17645" e_length="549"/>
          </exon>
          <intron i_serial="14" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17644" i_stop="16123" i_length="1522"/>
          </intron>
          <exon e_serial="15" e_score="0.684">
            <gDNA_exon_boundary e_start="16122" e_stop="16104" e_length="19"/>
          </exon>
          <intron i_serial="15" don_prob="0.941" acc_prob="0.298">
            <gDNA_intron_boundary i_start="16103" i_stop="15810" i_length="294"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="15809" e_stop="15803" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25316" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25304" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25302" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25301" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25299" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25294" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25293" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25292" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25275" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24380" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23434" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18304"/>
              <exon start="18193" stop="18056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21102" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20975" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20762" stop="20707"/>
              <exon start="20618" stop="20520"/>
              <exon start="18784" stop="18751"/>
              <exon start="18578" stop="18304"/>
              <exon start="18193" stop="17850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554369" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18751"/>
              <exon start="18578" stop="18304"/>
              <exon start="18193" stop="17961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18574" stop="18304"/>
              <exon start="18193" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18386" stop="18304"/>
              <exon start="18193" stop="17839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18373" stop="18304"/>
              <exon start="18193" stop="17839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18192" stop="17820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="17851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17979" stop="17645"/>
              <exon start="16122" stop="16104"/>
              <exon start="15809" stop="15803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17866" stop="17645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG : GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG : TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG : GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG : ATCTCCATCAAGATCCAGATCCCCAGTACCATCT : CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG : GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGGAGGTTGGTGTTTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGAAATAGAATTGACTAGTTCACAGAGTT : ATCATTCACCTACAAAATA : AAAAAAA</gDNA_template>
            <first_frame> K  T  L  T  F  K  I  L  L  L  *  A  L  C  V  F  I  L  H  Q  S  S  S  K   : G  T  M  S  R  S  S  R  T  I  Y  V  G  N  L  P  G  D  I  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  D  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  E  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  D  R  Y  N  S  G  N  N  S  G  H  N  G  G  R  N  N  H  K  F  G  A  P  K  R  T  E  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  E  G  S   : G  T  T  G  I  V  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  E  S  E  F  R  N  A  F  S  R  S  T  I  R  :  V  K  E  H  D  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  G  S  R  S  R  S  R  S  Y  S  R  S  R  S  R  S :   K  S  P  K  A  K  S  S  K  R  T  R  S  R  S  R  S  V  S  S  Q  P  R  S  G  L  K  G  R  S  L  S  R :   S  P  S  R  S  R  S  P  V  P  S  :  R  P  K  R  V  S  K  S  P  K  P  R  D  S  R  R  S  Q  S  L  S  K  S  P  K  P  R  D  S  R  R  S  E  S  P  S  K  S  P  K  L  R  D  S  R  R  S  K  S  M  S  K  S  P  E  P  R  N  S  R  R  S  P  S  R  S  K  S  P  K  P  R  N  S  R  R  S  P  S  R  S  R  S  R  S  R  S  G  S  L  S  R :   *  E  L  Y  C  G  L  S  C  C  C  R  C  G  D  R  E  C  A  A  V  P  E  *  S  S  *  A  V  G  V  I  F  S  D  N  *  S  *  *  M  A  S  E  F  F  G  P  *  P  K  *  N  S  T  V  N  L  *  L  G  E  D  C  S  I  L  V  F  *  A  T  L  Q  H  V  *  W  Q  K  L  K  I  M  S  W  I  F  A  D  F  V  I  C  F  L  Q  V  K  C  Y  L  C  N  D  I  V  C  T  L  V  T  L  *  V  L  F  L  M  C  V  C  F  P  D  E  L  G  S  *  G  G  W  C  F  M  Q  P  *  A  L  V  C  R  C  H  R  A  V  T  F  Y  L  C  D  *  R  M  F  I  T  L  L  *  V  I  T  L  S  Y  P  T  L  R  N  R  I  D  *  F  T  E  L :   S  F  T  Y  K  I  :  K  K  </first_frame>
            <second_frame>  K  P  *  P  S  K  F  S  F  S  K  R  S  V  F  S  S  F  I  N  L  L  V  K  :  E  Q  *  V  V  Q  V  G  R  F  M  L  V  I  F  L  V  I  F  V  S  E  K  W  R  I  C  S  T  S :   M  A  R  *  H  I  L  I  *  K  F  H  Q  D  P  Q  V  M  L  L  L  S :   L  K  R  H  A  M  L  R  M  L  F  V  G  A  M  A  M  N  L  M  G  I  V  *  G :   L  S  L  H  M  V  G  V  V  T  H  R  Q  I  V  I  I  V  A  I  I  V  A  I  M  V  V  V  I  I  T  N  L  E  R  P  N  V  P  S  I  E  :  F  *  L  P  D  C  P  I  Q  H  P  G  R  I  S  R :   I  I  C  V  E  L  G  M  F  V  S  H  K  F  S  V  R  G  V  :  G  P  L  G  L  W  I  I  P  T  M  T  T  *  N  M  L :   *  K  N  L  M  N  L  S  F  G  M  L  F  L  V  Q  Q  F  G :   *  R  N  M  I  L  E  A  A  A  A  A  V  L  T  R  E  E  R  V  V  A  V  A  A  V  E  V  T  V  A  A  G  A  E   : A  N  L  L  K  L  S  R  Q  S  V  Q  D  L  V  L  D  L  S  L  L  S  P  V  L  G  *  K  D  A  L  C  Q   : D  L  H  Q  D  P  D  P  Q  Y  H  L :   A  Q  N  V  *  A  K  A  Q  N  L  A  T  P  G  E  A  R  A  *  V  K  A  Q  N  L  V  I  P  G  E  A  R  V  Q  A  R  A  P  N  C  V  I  P  G  E  A  R  A  *  V  K  A  P  N  H  A  I  P  G  G  A  P  A  G  A  K  A  P  N  H  A  I  P  G  E  A  L  A  G  A  A  A  G  V  A  V  G  V  C  R   : G  E  S  Y  I  V  D  *  A  V  A  A  G  A  E  I  E  S  V  L  L  C  L  N  R  A  A  E  L  L  V  S  S  F  P  I  T  S  P  D  E  W  L  L  N  F  L  V  H  D  Q  N  R  T  Q  L  *  T  F  D  L  G  K  T  A  V  F  *  Y  F  K  Q  L  C  S  M  Y  D  G  K  N  *  K  L  C  L  G  Y  L  Q  I  L  L  F  V  S  C  R  *  N  A  T  Y  V  M  T  L  S  A  L  L  *  L  C  K  F  F  S  *  C  V  S  V  F  L  M  N  *  G  R  R  E  V  G  V  L  C  N  L  K  P  W  F  A  G  A  I  G  Q  S  P  F  I  F  V  I  E  G  C  L  L  P  F  C  E  L  *  P  F  L  I  P  L  *  E  I  E  L  T  S  S  Q  S   : Y  H  S  P  T  K  * :   K  K </second_frame>
            <third_frame>   N  P  N  L  Q  N  S  P  S  L  S  A  L  C  F  H  P  S  S  I  F  *  *  R :   N  N  E  S  F  K  *  D  D  L  C  W  *  S  S  W  *  Y  S  *  A  R  S  G  G  S  V  L  Q   : V  W  P  D  S  T  Y  *  S  E  N  S  T  K  T  P  R  L  C  F  C  *   : V  *  R  G  T  R  C  *  G  C  Y  S  W  A  R  W  L  *  I  *  W  A  S  F  E   : G  *  A  C  T  W  W  A  W  *  L  I  V  R  S  L  *  *  W  Q  *  *  W  P  *  W  W  S  *  *  S  Q  I  W  S  A  Q  T  Y  R  V  S  S :   F  S  Y  R  I  A  P  F  S  I  L  A  G  S  Q   : G  S  Y  A  S  S  W  G  C  L  F  L  T  S  F  P  *  G  E  W :   D  H  W  D  C  G  L  Y  Q  L  *  R  H  E  I  C   : Y  K  K  T  *  *  I  *  V  S  E  C  F  F  S  F  N  N  S   : G  E  G  T  *  F  *  K  P  Q  P  Q  P  F  L  L  E  R  K  E  W  *  P  *  P  Q  S  K  L  Q  S  Q  P  E  Q  K  :  Q  I  S  *  S  *  V  V  K  A  Y  K  I  S  F  *  I  C  L  F  S  A  P  F  W  V  K  R  T  L  F  V  K  :  I  S  I  K  I  Q  I  P  S  T  I   : S  P  K  T  C  E  Q  K  P  K  T  S  R  L  Q  E  K  P  E  L  E  *  K  P  K  T  S  *  F  Q  E  K  R  E  S  K  Q  E  P  Q  T  A  *  F  Q  E  K  Q  E  H  E  *  K  P  R  T  T  Q  F  Q  E  E  P  Q  Q  E  Q  K  P  Q  T  T  Q  F  Q  E  K  P  *  Q  E  P  Q  P  E  S  Q  W  E  F  V  E  :  V  R  A  I  L  W  I  K  L  L  L  Q  V  R  R  *  R  V  C  C  C  A  *  I  E  Q  L  S  C  W  C  H  L  F  R  *  L  V  L  M  N  G  F  *  I  F  W  S  M  T  K  I  E  L  N  C  E  P  L  T  W  G  R  L  Q  Y  S  S  I  L  S  N  F  A  A  C  M  M  A  K  I  E  N  Y  V  L  D  I  C  R  F  C  Y  L  F  P  A  G  E  M  L  L  M  *  *  H  C  L  H  S  C  D  F  V  S  S  F  P  D  V  C  L  F  S  *  *  I  R  V  V  G  R  L  V  F  Y  A  T  L  S  P  G  L  P  V  P  *  G  S  H  L  L  S  L  *  L  K  D  V  Y  Y  P  S  V  S  Y  N  P  F  L  S  H  F  E  K  *  N  *  L  V  H  R  V  :  I  I  H  L  Q  N   : K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25283" stop="25244"/>
                    <exon start="24458" stop="24370"/>
                    <exon start="24282" stop="24217"/>
                    <exon start="24119" stop="24045"/>
                    <exon start="23666" stop="23540"/>
                    <exon start="23458" stop="23412"/>
                    <exon start="23304" stop="23247"/>
                    <exon start="21146" stop="21097"/>
                    <exon start="20984" stop="20928"/>
                    <exon start="20813" stop="20707"/>
                    <exon start="20618" stop="20520"/>
                    <exon start="18784" stop="18751"/>
                    <exon start="18578" stop="18304"/>
                    <exon start="18193" stop="18190"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCVFILHQSSSKGTMSRSSRTIYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYEFDGHRLRVELAHGGRGNSSSDRYNSGNNSGHNGGRNNHKFGAPKRTEYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFREGSGTTGIVDYTNYDDMKYAIKKLDESEFRNAFSRSTIRVKEHDSRSRSRSRSYSRGKSGSRSRSRSYSRSRSRSKSPKAKSSKRTRSRSRSVSSQPRSGLKGRSLSRSPSRSRSPVPSRPKRVSKSPKPRDSRRSQSLSKSPKPRDSRRSESPSKSPKLRDSRRSKSMSKSPEPRNSRRSPSRSKSPKPRNSRRSPSRSRSRSRSGSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25316" e_stop="25244"/>
            <exon e_start="24458" e_stop="24370"/>
            <exon e_start="24282" e_stop="24217"/>
            <exon e_start="24119" e_stop="24045"/>
            <exon e_start="23666" e_stop="23540"/>
            <exon e_start="23458" e_stop="23412"/>
            <exon e_start="23304" e_stop="23247"/>
            <exon e_start="21146" e_stop="21097"/>
            <exon e_start="20984" e_stop="20928"/>
            <exon e_start="20813" e_stop="20707"/>
            <exon e_start="20618" e_stop="20126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.429" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25316" e_stop="25244" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25243" i_stop="24459" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24458" e_stop="24370" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24369" i_stop="24283" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24282" e_stop="24217" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24216" i_stop="24120" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24119" e_stop="24045" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24044" i_stop="23667" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23666" e_stop="23540" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23539" i_stop="23459" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23458" e_stop="23412" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23411" i_stop="23305" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23304" e_stop="23247" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.926">
            <gDNA_intron_boundary i_start="23246" i_stop="21147" i_length="2100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21146" e_stop="21097" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="21096" i_stop="20985" i_length="112"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20984" e_stop="20928" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.870" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20927" i_stop="20814" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20813" e_stop="20707" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.429">
            <gDNA_intron_boundary i_start="20706" i_stop="20619" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.996">
            <gDNA_exon_boundary e_start="20618" e_stop="20126" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25316" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25304" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25302" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25301" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25299" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25294" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25293" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23247"/>
              <exon start="21146" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25275" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="25244"/>
              <exon start="24458" stop="24370"/>
              <exon start="24282" stop="24217"/>
              <exon start="24119" stop="24045"/>
              <exon start="23666" stop="23540"/>
              <exon start="23458" stop="23412"/>
              <exon start="23304" stop="23261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21123" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="21097"/>
              <exon start="20984" stop="20928"/>
              <exon start="20813" stop="20707"/>
              <exon start="20618" stop="20226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG : GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG : TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG : GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</gDNA_template>
            <first_frame> K  T  L  T  F  K  I  L  L  L  *  A  L  C  V  F  I  L  H  Q  S  S  S  K   : G  T  M  S  R  S  S  R  T  I  Y  V  G  N  L  P  G  D  I  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  D  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  E  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  D  R  Y  N  S  G  N  N  S  G  H  N  G  G  R  N  N  H  K  F  G  A  P  K  R  T  E  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  E  G  S   : G  T  T  G  I  V  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  E  S  E  F  R  N  A  F  S  R  S  T  I  R  :  V  K  E  H  D  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  G  S  R  S  R  S  R  S  Y  S  R  S  R  S  R  S :   K  S  P  K  A  K  S  S  K  R  T  R  S  R  S  R  S  V  S  S  Q  P  R  S  G  L  K  G  R  S  L  S  R  *  S  F  L  L  V  I  S  T  H  F  V  V  G  A  G  Y  V  K  V  A  Y  S  T  R  L  M  Y  I  F  M  Q  V  L  V  L  V  F  F  *  V  K  S  P  C  V  Y  Q  F  I  L  I  I  L  I  F  S  L  *  K  P  P  G  N  *  L  L  H  L  A  P  H  L  F  S  G  K  S  A  E  H  F  V  S  N  P  *  S  *  L  D  F  V  *  L  W  T  *  D  G  F  E  A  K  S  C  F  A  V  *  P  I  *  H  F  H  T  S  W  L  *  I  S  Q  I  Q  I  A  N  C  I </first_frame>
            <second_frame>  K  P  *  P  S  K  F  S  F  S  K  R  S  V  F  S  S  F  I  N  L  L  V  K  :  E  Q  *  V  V  Q  V  G  R  F  M  L  V  I  F  L  V  I  F  V  S  E  K  W  R  I  C  S  T  S :   M  A  R  *  H  I  L  I  *  K  F  H  Q  D  P  Q  V  M  L  L  L  S :   L  K  R  H  A  M  L  R  M  L  F  V  G  A  M  A  M  N  L  M  G  I  V  *  G :   L  S  L  H  M  V  G  V  V  T  H  R  Q  I  V  I  I  V  A  I  I  V  A  I  M  V  V  V  I  I  T  N  L  E  R  P  N  V  P  S  I  E  :  F  *  L  P  D  C  P  I  Q  H  P  G  R  I  S  R :   I  I  C  V  E  L  G  M  F  V  S  H  K  F  S  V  R  G  V  :  G  P  L  G  L  W  I  I  P  T  M  T  T  *  N  M  L :   *  K  N  L  M  N  L  S  F  G  M  L  F  L  V  Q  Q  F  G :   *  R  N  M  I  L  E  A  A  A  A  A  V  L  T  R  E  E  R  V  V  A  V  A  A  V  E  V  T  V  A  A  G  A  E   : A  N  L  L  K  L  S  R  Q  S  V  Q  D  L  V  L  D  L  S  L  L  S  P  V  L  G  *  K  D  A  L  C  Q  G  N  L  S  Y  W  S  Y  L  P  I  L  L  L  G  Q  V  M  *  K  *  H  I  V  Q  G  *  C  I  F  L  C  K  S  L  Y  W  S  F  F  E  S  K  V  L  V  S  I  S  L  S  *  S  F  *  S  F  L  C  E  S  H  L  G  I  N  C  C  I  L  H  L  I  Y  L  V  G  N  Q  L  S  T  L  F  P  T  L  N  L  D  *  T  L  Y  S  C  G  H  E  M  A  L  K  Q  K  V  V  L  Q  C  D  Q  F  N  I  F  T  Q  V  G  C  K  F  H  K  F  K  L  Q  I  A   </second_frame>
            <third_frame>   N  P  N  L  Q  N  S  P  S  L  S  A  L  C  F  H  P  S  S  I  F  *  *  R :   N  N  E  S  F  K  *  D  D  L  C  W  *  S  S  W  *  Y  S  *  A  R  S  G  G  S  V  L  Q   : V  W  P  D  S  T  Y  *  S  E  N  S  T  K  T  P  R  L  C  F  C  *   : V  *  R  G  T  R  C  *  G  C  Y  S  W  A  R  W  L  *  I  *  W  A  S  F  E   : G  *  A  C  T  W  W  A  W  *  L  I  V  R  S  L  *  *  W  Q  *  *  W  P  *  W  W  S  *  *  S  Q  I  W  S  A  Q  T  Y  R  V  S  S :   F  S  Y  R  I  A  P  F  S  I  L  A  G  S  Q   : G  S  Y  A  S  S  W  G  C  L  F  L  T  S  F  P  *  G  E  W :   D  H  W  D  C  G  L  Y  Q  L  *  R  H  E  I  C   : Y  K  K  T  *  *  I  *  V  S  E  C  F  F  S  F  N  N  S   : G  E  G  T  *  F  *  K  P  Q  P  Q  P  F  L  L  E  R  K  E  W  *  P  *  P  Q  S  K  L  Q  S  Q  P  E  Q  K  :  Q  I  S  *  S  *  V  V  K  A  Y  K  I  S  F  *  I  C  L  F  S  A  P  F  W  V  K  R  T  L  F  V  K  V  I  F  L  T  G  H  I  Y  P  F  C  C  W  G  R  L  C  K  S  S  I  *  Y  K  V  N  V  Y  F  Y  A  S  P  C  T  G  L  F  L  S  Q  K  S  L  C  L  S  V  Y  L  N  H  F  N  L  F  F  V  K  A  T  W  E  L  T  V  A  S  C  T  S  F  I  *  W  E  I  S  *  A  L  C  F  Q  P  L  I  L  T  R  L  C  I  V  V  D  M  R  W  L  *  S  K  K  L  F  C  S  V  T  N  L  T  F  S  H  K  L  V  V  N  F  T  N  S  N  C  K  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25283" stop="25244"/>
                    <exon start="24458" stop="24370"/>
                    <exon start="24282" stop="24217"/>
                    <exon start="24119" stop="24045"/>
                    <exon start="23666" stop="23540"/>
                    <exon start="23458" stop="23412"/>
                    <exon start="23304" stop="23247"/>
                    <exon start="21146" stop="21097"/>
                    <exon start="20984" stop="20928"/>
                    <exon start="20813" stop="20707"/>
                    <exon start="20618" stop="20516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCVFILHQSSSKGTMSRSSRTIYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYEFDGHRLRVELAHGGRGNSSSDRYNSGNNSGHNGGRNNHKFGAPKRTEYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFREGSGTTGIVDYTNYDDMKYAIKKLDESEFRNAFSRSTIRVKEHDSRSRSRSRSYSRGKSGSRSRSRSYSRSRSRSKSPKAKSSKRTRSRSRSVSSQPRSGLKGRSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18938" e_stop="18751"/>
            <exon e_start="18578" e_stop="18304"/>
            <exon e_start="18193" e_stop="17645"/>
            <exon e_start="16122" e_stop="16104"/>
            <exon e_start="15809" e_stop="15803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="0.984"/>
          <exon-intron don_prob="0.723" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.298" e_score="0.684"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="18938" e_stop="18751" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="18750" i_stop="18579" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18578" e_stop="18304" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.723" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18303" i_stop="18194" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18193" e_stop="17645" e_length="549"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17644" i_stop="16123" i_length="1522"/>
          </intron>
          <exon e_serial="4" e_score="0.684">
            <gDNA_exon_boundary e_start="16122" e_stop="16104" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.298">
            <gDNA_intron_boundary i_start="16103" i_stop="15810" i_length="294"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15809" e_stop="15803" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18938" stop="18751"/>
              <exon start="18578" stop="18304"/>
              <exon start="18193" stop="17941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18751"/>
              <exon start="18578" stop="18304"/>
              <exon start="18193" stop="17961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18574" stop="18304"/>
              <exon start="18193" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18386" stop="18304"/>
              <exon start="18193" stop="17839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18373" stop="18304"/>
              <exon start="18193" stop="17839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18192" stop="17820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="17851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17979" stop="17645"/>
              <exon start="16122" stop="16104"/>
              <exon start="15809" stop="15803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17866" stop="17645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGCCACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGGATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAGTACCATCT : CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG : GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGTTTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAAGTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGGAGGTTGGTGTTTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGTGATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGAAATAGAATTGACTAGTTCACAGAGTT : ATCATTCACCTACAAAATA : AAAAAAA</gDNA_template>
            <first_frame> V  F  S  L  G  W  *  N  G  N  G  F  L  H  V  Y  F  D  Y  G  H  S  D  V  E  V  A  S  R  Q  S  D  E  S  C  *  A  E  G  W  I  L  N  *  V  V  S  G  H  F  A  D  L  H  Q  D  P  D  P  Q  Y  H  L :   A  Q  N  V  *  A  K  A  Q  N  L  A  T  P  G  E  A  R  A  *  V  K  A  Q  N  L  V  I  P  G  E  A  R  V  Q  A  R  A  P  N  C  V  I  P  G  E  A  R  A  *  V  K  A  P  N  H  A  I  P  G  G  A  P  A  G  A  K  A  P  N  H  A  I  P  G  E  A  L  A  G  A  A  A  G  V  A  V  G  V  C  R   : G  E  S  Y  I  V  D  *  A  V  A  A  G  A  E  I  E  S  V  L  L  C  L  N  R  A  A  E  L  L  V  S  S  F  P  I  T  S  P  D  E  W  L  L  N  F  L  V  H  D  Q  N  R  T  Q  L  *  T  F  D  L  G  K  T  A  V  F  *  Y  F  K  Q  L  C  S  M  Y  D  G  K  N  *  K  L  C  L  G  Y  L  Q  I  L  L  F  V  S  C  R  *  N  A  T  Y  V  M  T  L  S  A  L  L  *  L  C  K  F  F  S  *  C  V  S  V  F  L  M  N  *  G  R  R  E  V  G  V  L  C  N  L  K  P  W  F  A  G  A  I  G  Q  S  P  F  I  F  V  I  E  G  C  L  L  P  F  C  E  L  *  P  F  L  I  P  L  *  E  I  E  L  T  S  S  Q  S   : Y  H  S  P  T  K  * :   K  K </first_frame>
            <second_frame>  F  S  L  W  D  G  E  M  V  T  G  F  C  M  S  T  L  I  M  A  T  P  T  W  K  W  H  Q  G  S  R  M  K  V  V  K  R  K  V  G  Y  *  I  E  L  F  L  D  I  L  Q  I  S  I  K  I  Q  I  P  S  T  I   : S  P  K  T  C  E  Q  K  P  K  T  S  R  L  Q  E  K  P  E  L  E  *  K  P  K  T  S  *  F  Q  E  K  R  E  S  K  Q  E  P  Q  T  A  *  F  Q  E  K  Q  E  H  E  *  K  P  R  T  T  Q  F  Q  E  E  P  Q  Q  E  Q  K  P  Q  T  T  Q  F  Q  E  K  P  *  Q  E  P  Q  P  E  S  Q  W  E  F  V  E  :  V  R  A  I  L  W  I  K  L  L  L  Q  V  R  R  *  R  V  C  C  C  A  *  I  E  Q  L  S  C  W  C  H  L  F  R  *  L  V  L  M  N  G  F  *  I  F  W  S  M  T  K  I  E  L  N  C  E  P  L  T  W  G  R  L  Q  Y  S  S  I  L  S  N  F  A  A  C  M  M  A  K  I  E  N  Y  V  L  D  I  C  R  F  C  Y  L  F  P  A  G  E  M  L  L  M  *  *  H  C  L  H  S  C  D  F  V  S  S  F  P  D  V  C  L  F  S  *  *  I  R  V  V  G  R  L  V  F  Y  A  T  L  S  P  G  L  P  V  P  *  G  S  H  L  L  S  L  *  L  K  D  V  Y  Y  P  S  V  S  Y  N  P  F  L  S  H  F  E  K  *  N  *  L  V  H  R  V  :  I  I  H  L  Q  N   : K  K   </second_frame>
            <third_frame>   F  L  F  G  M  V  K  W  *  R  V  S  A  C  L  L  *  L  W  P  L  R  R  G  S  G  I  K  A  V  G  *  K  L  L  S  G  R  L  D  I  K  L  S  C  F  W  T  F  C  R  S  P  S  R  S  R  S  P  V  P  S  :  R  P  K  R  V  S  K  S  P  K  P  R  D  S  R  R  S  Q  S  L  S  K  S  P  K  P  R  D  S  R  R  S  E  S  P  S  K  S  P  K  L  R  D  S  R  R  S  K  S  M  S  K  S  P  E  P  R  N  S  R  R  S  P  S  R  S  K  S  P  K  P  R  N  S  R  R  S  P  S  R  S  R  S  R  S  R  S  G  S  L  S  R :   *  E  L  Y  C  G  L  S  C  C  C  R  C  G  D  R  E  C  A  A  V  P  E  *  S  S  *  A  V  G  V  I  F  S  D  N  *  S  *  *  M  A  S  E  F  F  G  P  *  P  K  *  N  S  T  V  N  L  *  L  G  E  D  C  S  I  L  V  F  *  A  T  L  Q  H  V  *  W  Q  K  L  K  I  M  S  W  I  F  A  D  F  V  I  C  F  L  Q  V  K  C  Y  L  C  N  D  I  V  C  T  L  V  T  L  *  V  L  F  L  M  C  V  C  F  P  D  E  L  G  S  *  G  G  W  C  F  M  Q  P  *  A  L  V  C  R  C  H  R  A  V  T  F  Y  L  C  D  *  R  M  F  I  T  L  L  *  V  I  T  L  S  Y  P  T  L  R  N  R  I  D  *  F  T  E  L :   S  F  T  Y  K  I  :  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18840" stop="18751"/>
                    <exon start="18578" stop="18304"/>
                    <exon start="18193" stop="18190"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLSGRLDIKLSCFWTFCRSPSRSRSPVPSRPKRVSKSPKPRDSRRSQSLSKSPKPRDSRRSESPSKSPKLRDSRRSKSMSKSPEPRNSRRSPSRSKSPKPRNSRRSPSRSRSRSRSGSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="19976" e_stop="19432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="19976" e_stop="19432" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19976" stop="19432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAAGTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAACTAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGGTGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCTGCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGAACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAGAGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGCGGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCATTTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCCTATGC</gDNA_template>
            <first_frame> N  I  K  V  L  I  P  H  S  V  W  I  N  I  V  L  P  K  L  *  V  N  L  L  E  I  C  Q  D  S  R  S  T  C  N  G  S  V  G  N  *  A  V  I  S  *  Y  G  A  R  I  V  V  L  I  G  F  I  L  W  *  G  T  I  L  H  L  F  W  W  H  R  D  S  Q  C  *  F  H  S  A  S  G  C  L  R  P  K  K  P  S  L  L  Q  G  D  R  S  F  *  T  *  A  M  S  N  H  L  I  N  Q  T  S  *  G  T  S  Q  V  Q  S  P  V  H  Q  D  C  S  S  S  S  N  Y  A  V  S  N  C  N  C  G  Y  Q  I  C  G  Q  L  V  I  Q  L  *  K  D  V  *  I  L  H  F  R  I  H  *  E  Q  N  S  C  W  V  L  D  V  E  V  G  S  S  Y   </first_frame>
            <second_frame>  T  L  R  F  *  S  L  I  Q  F  G  S  I  S  S  F  Q  N  C  K  *  T  F  W  K  F  V  K  I  L  D  Q  R  A  M  A  Q  W  V  T  K  L  S  L  A  N  M  V  L  V  L  *  F  *  *  A  L  Y  Y  G  E  V  Q  F  C  I  F  F  G  G  I  E  I  A  N  V  N  F  I  L  L  Q  G  V  S  V  Q  K  N  P  V  C  F  R  V  I  D  L  F  E  P  K  Q  C  Q  T  I  *  *  T  R  Q  A  R  E  H  H  K  C  R  V  L  Y  I  R  I  V  L  L  L  L  I  M  L  C  L  T  V  I  A  A  I  K  Y  V  V  N  W  S  F  S  Y  E  K  M  S  R  Y  C  I  S  E  S  I  R  N  K  I  V  V  G  C  W  M  *  K  L  V  L  P  M  </second_frame>
            <third_frame>   H  *  G  S  D  P  S  F  S  L  D  Q  Y  R  P  S  K  I  V  S  E  P  F  G  N  L  S  R  F  *  I  N  V  Q  W  L  S  G  *  L  S  C  H  *  L  I  W  C  S  Y  C  S  F  N  R  L  Y  I  M  V  R  Y  N  S  A  S  F  L  V  A  *  R  *  P  M  L  I  S  F  C  F  R  V  S  P  S  K  K  T  Q  S  A  S  G  *  *  I  F  L  N  L  S  N  V  K  P  F  D  K  P  D  K  L  G  N  I  T  S  A  E  S  C  T  S  G  L  F  F  F  F  *  L  C  C  V  *  L  *  L  R  L  S  N  M  W  S  T  G  H  S  V  M  K  R  C  L  D  T  A  F  Q  N  P  L  G  T  K  *  L  L  G  V  G  C  R  S  W  F  F  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19648" stop="19451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRQAREHHKCRVLYIRIVLLLLIMLCLTVIAAIKYVVNWSFSYEKMSRYCISESIRNKIVVGCWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="16114" PGL_stop="17503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16114" e_stop="16235"/>
            <exon e_start="17081" e_stop="17503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16114" e_stop="16235" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16236" i_stop="17080" i_length="845"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17081" e_stop="17503" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16114" stop="16235"/>
              <exon start="17081" stop="17503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAATGATGTTGTAGTTGAGATAGTGGAAGGTGATGCTAGGCATGTCCTTTGTGAAGCTGTAGAGAAACTTCATGCCTCTGTTTTAGTTGTTGGTTGTCATGGTTATGGAGTTATAAAGAG : GACTGTTTTGGGTAGTGTAAGTGACTACTGTGCTCATCATGCCCACTGCAGTGTGATGATTGTGAAGAAGCCAAAGACTAAAGCTTAAATTGTTTCTACTTGGCATTTGATTTGTTGTGTTGTCCTAGTGAATAAGATTACAAATATGTGATCTGTTTCTTCAACTCCAGGAGGAAAGGAAAAGAAAAGAAACTCATTTGTTTGTGTATTTATTTGATTTCTGCACTCAGTATCTATATATTACAAGGCTGTGGTGGTTGTGTAACAAAACAAATACTTTAGGGTCTTGTGTAGTGTTAATCACAATCTTCATGTATAAAATAAAAGACTAAATGCAGTGTATGGAGCTCCAAGTTATCCTCCTCATAAATATATCAGGTTGTCCACGAGAATTATTAGTAGTATAGAAACTTGATATACATT</gDNA_template>
            <first_frame> V  N  D  V  V  V  E  I  V  E  G  D  A  R  H  V  L  C  E  A  V  E  K  L  H  A  S  V  L  V  V  G  C  H  G  Y  G  V  I  K  R :   T  V  L  G  S  V  S  D  Y  C  A  H  H  A  H  C  S  V  M  I  V  K  K  P  K  T  K  A  *  I  V  S  T  W  H  L  I  C  C  V  V  L  V  N  K  I  T  N  M  *  S  V  S  S  T  P  G  G  K  E  K  K  R  N  S  F  V  C  V  F  I  *  F  L  H  S  V  S  I  Y  Y  K  A  V  V  V  V  *  Q  N  K  Y  F  R  V  L  C  S  V  N  H  N  L  H  V  *  N  K  R  L  N  A  V  Y  G  A  P  S  Y  P  P  H  K  Y  I  R  L  S  T  R  I  I  S  S  I  E  T  *  Y  T   </first_frame>
            <second_frame>  *  M  M  L  *  L  R  *  W  K  V  M  L  G  M  S  F  V  K  L  *  R  N  F  M  P  L  F  *  L  L  V  V  M  V  M  E  L  *  R   : G  L  F  W  V  V  *  V  T  T  V  L  I  M  P  T  A  V  *  *  L  *  R  S  Q  R  L  K  L  K  L  F  L  L  G  I  *  F  V  V  L  S  *  *  I  R  L  Q  I  C  D  L  F  L  Q  L  Q  E  E  R  K  R  K  E  T  H  L  F  V  Y  L  F  D  F  C  T  Q  Y  L  Y  I  T  R  L  W  W  L  C  N  K  T  N  T  L  G  S  C  V  V  L  I  T  I  F  M  Y  K  I  K  D  *  M  Q  C  M  E  L  Q  V  I  L  L  I  N  I  S  G  C  P  R  E  L  L  V  V  *  K  L  D  I  H  </second_frame>
            <third_frame>   E  *  C  C  S  *  D  S  G  R  *  C  *  A  C  P  L  *  S  C  R  E  T  S  C  L  C  F  S  C  W  L  S  W  L  W  S  Y  K  E  :  D  C  F  G  *  C  K  *  L  L  C  S  S  C  P  L  Q  C  D  D  C  E  E  A  K  D  *  S  L  N  C  F  Y  L  A  F  D  L  L  C  C  P  S  E  *  D  Y  K  Y  V  I  C  F  F  N  S  R  R  K  G  K  E  K  K  L  I  C  L  C  I  Y  L  I  S  A  L  S  I  Y  I  L  Q  G  C  G  G  C  V  T  K  Q  I  L  *  G  L  V  *  C  *  S  Q  S  S  C  I  K  *  K  T  K  C  S  V  W  S  S  K  L  S  S  S  *  I  Y  Q  V  V  H  E  N  Y  *  *  Y  R  N  L  I  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16114" stop="16235"/>
                    <exon start="17081" stop="17168"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNDVVVEIVEGDARHVLCEAVEKLHASVLVVGCHGYGVIKRTVLGSVSDYCAHHAHCSVMIVKKPKTKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17212" stop="17412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRLQICDLFLQLQEERKRKETHLFVYLFDFCTQYLYITRLWWLCNKTNTLGSCVVLITIFMYKIKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="25965" PGL_stop="28320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25965" e_stop="26031"/>
            <exon e_start="27991" e_stop="28320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.595" e_score="0.500"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="25965" e_stop="26031" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.595">
            <gDNA_intron_boundary i_start="26032" i_stop="27990" i_length="1959"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="27991" e_stop="28320" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25965" stop="26031"/>
              <exon start="27991" stop="28320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT : AATTTGTTAATGGTAAACACTTATTTTATGACCTATACAAGGCACAAAATGAAAGTGCAATGTAGGTTCAAAAAAGTACAAGTCGGCTTACGCATACGCGCACACAAAAAATTCAATAAAAAGAGAACGTCTTACGATACAACAAACACTTGACTCACAGACAAGGATGAAGGATAGGAAGGAAAAAAAAGAGCACACCACAAAGCAAAAAGGTTACAAAAGGAGTGTTACTTGTGGCCTATATTTATTAACCTACTAGTAATACATAGGCCATATTTTGCTCCTCAGTCTACGAGGTATTAGCAGCCATTTCCAACTATTGTTCCCCCT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : *  F  V  N  G  K  H  L  F  Y  D  L  Y  K  A  Q  N  E  S  A  M  *  V  Q  K  S  T  S  R  L  T  H  T  R  T  Q  K  I  Q  *  K  E  N  V  L  R  Y  N  K  H  L  T  H  R  Q  G  *  R  I  G  R  K  K  K  S  T  P  Q  S  K  K  V  T  K  G  V  L  L  V  A  Y  I  Y  *  P  T  S  N  T  *  A  I  F  C  S  S  V  Y  E  V  L  A  A  I  S  N  Y  C  S  P  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  :  N  L  L  M  V  N  T  Y  F  M  T  Y  T  R  H  K  M  K  V  Q  C  R  F  K  K  V  Q  V  G  L  R  I  R  A  H  K  K  F  N  K  K  R  T  S  Y  D  T  T  N  T  *  L  T  D  K  D  E  G  *  E  G  K  K  R  A  H  H  K  A  K  R  L  Q  K  E  C  Y  L  W  P  I  F  I  N  L  L  V  I  H  R  P  Y  F  A  P  Q  S  T  R  Y  *  Q  P  F  P  T  I  V  P  P </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   I  C  *  W  *  T  L  I  L  *  P  I  Q  G  T  K  *  K  C  N  V  G  S  K  K  Y  K  S  A  Y  A  Y  A  H  T  K  N  S  I  K  R  E  R  L  T  I  Q  Q  T  L  D  S  Q  T  R  M  K  D  R  K  E  K  K  E  H  T  T  K  Q  K  G  Y  K  R  S  V  T  C  G  L  Y  L  L  T  Y  *  *  Y  I  G  H  I  L  L  L  S  L  R  G  I  S  S  H  F  Q  L  L  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25966" stop="26031"/>
                    <exon start="27991" stop="28143"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFSNLLMVNTYFMTYTRHKMKVQCRFKKVQVGLRIRAHKKFNKKRTSYDTTNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28043" stop="28249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCNVGSKKYKSAYAYAHTKNSIKRERLTIQQTLDSQTRMKDRKEKKEHTTKQKGYKRSVTCGLYLLTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="27763" PGL_stop="27087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27763" e_stop="27087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27763" e_stop="27087" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27763" stop="27317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27760" stop="27113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27760" stop="27483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27759" stop="27132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27759" stop="27162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27759" stop="27324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27757" stop="27087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTTTCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTTAAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAAGATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACTATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTATCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTGATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAACATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATAAAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATAGAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAGACTTGGGAGTTTCAAGAAGAAGAAACAAGCACGGATATGGGGGTTTTGAGAAAGGGGTAGAGGAATTTGAAGAA</gDNA_template>
            <first_frame> Y  T  I  S  V  S  Y  Y  G  *  S  A  R  A  L  L  S  K  I  S  V  S  Y  *  *  H  V  I  *  L  F  F  Y  F  F  Y  F  S  T  S  F  K  *  F  I  F  H  S  S  P  M  L  F  I  S  L  G  S  I  S  *  D  S  K  F  N  I  D  *  F  L  L  F  F  I  I  L  *  L  F  T  I  T  S  I  N  T  Y  I  S  H  H  I  F  F  P  N  *  M  K  L  S  I  H  I  D  M  A  I  L  N  L  C  K  I  D  M  L  I  F  L  I  S  C  *  F  S  Y  F  I  S  *  S  I  F  R  Y  R  L  S  N  I  I  V  K  *  I  I  I  L  L  R  K  I  K  S  Q  K  *  R  I  K  N  I  M  W  G  L  N  V  I  F  Y  F  C  I  A  K  K  Y  I  E  C  R  V  *  *  R  E  R  G  W  V  D  V  G  I  G  C  G  E  T  W  E  F  Q  E  E  E  T  S  T  D  M  G  V  L  R  K  G  *  R  N  L  K   </first_frame>
            <second_frame>  I  Q  Y  Q  F  H  I  M  G  E  V  H  A  L  Y  *  V  K  S  Q  F  H  I  D  D  M  S  Y  N  Y  F  F  I  F  F  T  F  P  H  L  L  N  N  L  F  F  T  L  H  L  C  S  S  F  H  L  G  Q  F  L  K  I  Q  N  L  I  L  I  D  S  F  Y  F  L  L  F  C  N  Y  L  L  L  L  P  S  I  L  I  S  V  T  I  F  F  F  P  T  R  *  N  Y  Q  F  I  S  I  W  R  F  *  I  Y  V  K  L  I  C  *  F  F  *  L  V  V  D  L  V  I  S  F  L  N  P  Y  S  G  I  D  *  V  T  L  *  L  N  K  *  L  F  C  *  G  K  S  N  L  K  S  K  E  *  R  I  L  C  G  A  *  M  *  F  S  I  F  V  *  P  K  N  I  *  N  V  E  F  D  E  E  K  E  D  G  S  M  L  G  *  D  V  V  R  L  G  S  F  K  K  K  K  Q  A  R  I  W  G  F  *  E  R  G  R  G  I  *  R  </second_frame>
            <third_frame>   Y  N  I  S  F  I  L  W  V  K  C  T  R  S  T  K  *  N  L  S  F  I  L  M  T  C  H  I  I  I  F  L  F  F  L  L  F  H  I  F  *  I  I  Y  F  S  L  F  T  Y  A  L  H  F  T  W  V  N  F  L  R  F  K  I  *  Y  *  L  I  P  F  I  F  Y  Y  F  V  I  I  Y  Y  Y  F  H  Q  Y  L  Y  Q  S  P  Y  F  F  S  Q  L  D  E  T  I  N  S  Y  R  Y  G  D  F  K  F  M  *  N  *  Y  A  N  F  F  D  *  L  L  I  *  L  F  H  F  L  I  H  I  Q  V  *  I  K  *  H  Y  S  *  I  N  N  Y  F  V  K  E  N  Q  I  S  K  V  K  N  K  E  Y  Y  V  G  L  K  C  D  F  L  F  L  Y  S  Q  K  I  Y  R  M  *  S  L  M  K  R  K  R  M  G  R  C  W  D  R  M  W  *  D  L  G  V  S  R  R  R  N  K  H  G  Y  G  G  F  E  K  G  V  E  E  F  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27714" stop="27466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSQFHIDDMSYNYFFIFFTFPHLLNNLFFTLHLCSSFHLGQFLKIQNLILIDSFYFLLFCNYLLLLPSILISVTIFFFPTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="29313" PGL_stop="27992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29313" e_stop="29265"/>
            <exon e_start="28803" e_stop="27992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29313" e_stop="29265" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29264" i_stop="28804" i_length="461"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="28803" e_stop="27992" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29265"/>
              <exon start="28803" stop="28299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29265"/>
              <exon start="28803" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29265"/>
              <exon start="28803" stop="28530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29265"/>
              <exon start="28803" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29311" stop="29265"/>
              <exon start="28803" stop="28282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29303" stop="29265"/>
              <exon start="28803" stop="28427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29296" stop="29265"/>
              <exon start="28803" stop="28295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29295" stop="29265"/>
              <exon start="28803" stop="28405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29265"/>
              <exon start="28803" stop="28149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29265"/>
              <exon start="28803" stop="28395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29281" stop="29265"/>
              <exon start="28803" stop="28079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28554" stop="28092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266436" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28506" stop="28015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28447" stop="27992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="27999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG : AGTCAAGAGCTATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGACCCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCTAGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAGTTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAACAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTATTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTTTGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTGTTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGACTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAAATAAGTGTTTACCATTAACAAAT</gDNA_template>
            <first_frame> P  F  G  Q  V  P  A  F  E  D  G  D  L  K  L  F   : E  S  R  A  I  T  Q  Y  I  A  H  T  Y  A  D  K  G  N  Q  L  L  P  N  D  P  K  K  M  A  V  M  S  V  W  M  E  V  E  A  Q  K  F  D  P  I  G  S  K  L  G  F  E  I  V  I  K  P  M  L  G  M  V  T  D  D  A  V  V  A  E  N  E  E  K  L  G  K  L  L  D  V  Y  E  S  R  L  K  E  S  K  Y  L  G  G  E  S  F  T  L  A  D  L  H  H  A  P  S  L  H  Y  L  S  G  S  K  V  K  S  L  F  D  A  R  P  H  V  S  A  W  V  A  D  I  L  A  R  P  A  W  S  K  T  I  E  L  S  K  Q  *  V  *  W  R  M  G  E  Y  R  V  E  R  K  G  E  Q  *  L  E  M  A  A  N  T  S  *  T  E  E  Q  N  M  A  Y  V  L  L  V  G  *  *  I  *  A  T  S  N  T  P  F  V  T  F  L  L  C  G  V  L  F  F  F  L  P  I  L  H  P  C  L  *  V  K  C  L  L  Y  R  K  T  F  S  F  Y  *  I  F  C  V  R  V  C  V  S  R  L  V  L  F  *  T  Y  I  A  L  S  F  C  A  L  Y  R  S  *  N  K  C  L  P  L  T  N </first_frame>
            <second_frame>  R  L  V  K  F  Q  L  L  K  M  E  I  *  S  F  L  :  S  Q  E  L  L  H  N  T  *  L  T  H  M  Q  T  K  G  T  N  F  Y  P  M  T  Q  R  K  W  Q  S  C  L  Y  G  W  K  *  K  P  R  N  S  T  P  L  V  Q  N  *  G  L  R  L  S  L  S  Q  C  W  A  W  *  L  M  M  Q  S  W  Q  R  T  K  R  N  S  G  N  F  L  M  C  M  N  L  D  S  R  N  R  N  I  W  V  V  R  V  S  P  *  L  I  C  T  T  P  R  L  C  T  T  C  R  G  V  K  *  R  A  C  S  M  L  G  L  M  L  A  L  G  L  L  I  F  W  L  G  Q  L  G  L  R  Q  L  S  C  Q  N  S  K  F  S  G  G  W  V  S  I  A  L  K  G  R  G  N  N  S  W  K  W  L  L  I  P  R  R  L  R  S  K  I  W  P  M  Y  Y  *  *  V  N  K  Y  R  P  Q  V  T  L  L  L  *  P  F  C  F  V  V  C  S  F  F  S  F  L  S  F  I  L  V  C  E  S  S  V  C  C  I  V  R  R  S  L  F  I  E  F  F  V  C  A  Y  A  *  A  D  L  Y  F  F  E  P  T  L  H  F  H  F  V  P  C  I  G  H  K  I  S  V  Y  H  *  Q   </second_frame>
            <third_frame>   V  W  S  S  S  S  F  *  R  W  R  F  K  A  F  * :   V  K  S  Y  Y  T  I  H  S  S  H  I  C  R  Q  R  E  P  T  F  T  Q  *  P  K  E  N  G  S  H  V  C  M  D  G  S  R  S  P  E  I  R  P  H  W  F  K  T  R  V  *  D  C  H  *  A  N  V  G  H  G  D  *  *  C  S  R  G  R  E  R  R  E  T  R  E  T  S  *  C  V  *  I  *  T  Q  G  I  E  I  F  G  W  *  E  F  H  P  S  *  F  A  P  R  P  V  F  A  L  L  V  G  E  *  S  E  E  L  V  R  C  *  A  S  C  *  R  L  G  C  *  Y  F  G  *  A  S  L  V  *  D  N  *  V  V  K  T  V  S  L  V  A  D  G  *  V  S  R  *  K  E  G  G  T  I  V  G  N  G  C  *  Y  L  V  D  *  G  A  K  Y  G  L  C  I  T  S  R  L  I  N  I  G  H  K  *  H  S  F  C  N  L  F  A  L  W  C  A  L  F  F  P  S  Y  P  S  S  L  S  V  S  Q  V  F  V  V  S  *  D  V  L  F  L  L  N  F  L  C  A  R  M  R  K  P  T  C  T  F  L  N  L  H  C  T  F  I  L  C  L  V  *  V  I  K  *  V  F  T  I  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024L21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29313" stop="29265"/>
                    <exon start="28803" stop="28358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFGQVPAFEDGDLKLFESRAITQYIAHTYADKGNQLLPNDPKKMAVMSVWMEVEAQKFDPIGSKLGFEIVIKPMLGMVTDDAVVAENEEKLGKLLDVYESRLKESKYLGGESFTLADLHHAPSLHYLSGSKVKSLFDARPHVSAWVADILARPAWSKTIELSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="49167" PGL_stop="48720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49167" e_stop="48720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="49167" e_stop="48720" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49167" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49167" stop="48862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49166" stop="48720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCTTGGGAGAGAGACGCTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAAGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  T  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  L  G  R  E  T  L  T  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  F  I  *  F  K  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  *  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  S  F  N  L  S  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  N  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  S  W  E  R  D  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024L21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 293 chains have been computed
$ 
$ memory statistics:
$ 169824 bytes spliced alignments in total
$ 60 spliced alignments have been stored
$ 2830 bytes was the average size of a spliced alignment
$ 18928 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 344 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:37:24
-->
