<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:42:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319777" ref_strand="+" ref_description="SGN-E319777 [cTOB-12-B9]">
      <seq>actgacaaccataaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctgattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaacgggccctcacgggttccttatctcccaaaacgcgaccacctttaacatcactgcctgttaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2025" stop="3499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2325" g_stop="2460" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="2794" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="232" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2795" i_stop="2875" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2876" g_stop="3199" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="556" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E319777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2325" e_stop="2460"/>
          <exon e_start="2699" e_stop="2794"/>
          <exon e_start="2876" e_stop="3199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</genome_strand>
        <mrna_strand>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTG.................................................................................ATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329807" ref_strand="+" ref_description="SGN-E329807 [cTOD-3-O22]">
      <seq>aaccataaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2031" stop="3290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2331" g_stop="2460" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="2990" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="422" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E329807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2331" e_stop="2460"/>
          <exon e_start="2699" e_stop="2990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAA</genome_strand>
        <mrna_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540223" ref_strand="+" ref_description="SGN-E540223 [TUS-60-G5]">
      <seq>taaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaacgggccctcacgggttccttatctcccaaaacgcgaccacctttaacatcactgcctgttaatactgtcaagtctcattctgaagatcaaaagaaatcaggaaaaacagcccaaaatttcatggtttcgataccatttaacctcaaagtggatgtaggttctaggaatgagggttccttgaatgatgagttaccgttttctgaactatgggctgggccagcgtattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2036" stop="3664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2336" g_stop="2460" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="3364" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="791" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E540223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2336" e_stop="2460"/>
          <exon e_start="2699" e_stop="3364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</genome_strand>
        <mrna_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548356" ref_strand="+" ref_description="SGN-E548356 [TUS-60-H4]">
      <seq>taaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2036" stop="3433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2336" g_stop="2460" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="3133" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="560" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E548356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2336" e_stop="2460"/>
          <exon e_start="2699" e_stop="3133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAA</genome_strand>
        <mrna_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286074" ref_strand="+" ref_description="SGN-E286074 [cLES-13-E4]">
      <seq>aaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2037" stop="3052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2337" g_stop="2460" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="2752" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="178" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E286074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2337" e_stop="2460"/>
          <exon e_start="2699" e_stop="2752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTT</genome_strand>
        <mrna_strand>AAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315402" ref_strand="+" ref_description="SGN-E315402 [cTOA-22-M23]">
      <seq>ttttttctcaggcctaaaaggaatgcctctcttgagtttcctacttcagcatgtgatattcatttacgtcccattgccaagtctgcaccagcatctccaaccagggagagcagtctttctccgggaattgtgtttgacaatactgactcagtgacacagactcttcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttagttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttagtgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattcaaagttcgtgcagtcatggttagactatgaggggttcaacaaatggagtatgtttgtgcatcgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtagaggttgcgtaacttgttgctcaactatctttgctgccctggagatgaatttgttataaccatcaattgtcattcttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3098" stop="4383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3398" g_stop="4083" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E315402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3398" e_stop="4083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTC</genome_strand>
        <mrna_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241203" ref_strand="+" ref_description="SGN-E241203 [cLED-26-I9]">
      <seq>ctctcttgagtttcctacttcagcatgtgatattcatttacgtcccattgccaagtctgcaccagcatctccaaccagggagagcagtctttctccgggaattgtgtttgacaatactgactcagtgacacagactcttcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttagttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttagtgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3124" stop="4160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3424" g_stop="3860" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E241203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3424" e_stop="3860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCA</genome_strand>
        <mrna_strand>CTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256668" ref_strand="+" ref_description="SGN-E256668 [cLEG-40-O3]">
      <seq>tcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttacttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttaatgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattcaaagttcgtgcagtcatggttagactatgaggggttcaacaaatggagtatgtttgtgcattgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtataagttgcattacttgttgctcaactatctttgctgccctggagatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3262" stop="4352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3562" g_stop="4052" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E256668" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3562" e_stop="4052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATT</genome_strand>
        <mrna_strand>TCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTACTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAATGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATTGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTATAAGTTGCATTACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317092" ref_strand="+" ref_description="SGN-E317092 [cTOA-27-H11]">
      <seq>ttcaacaaatggagtatgtttgtgcatcgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtagaggttgcgtaacttgttgctcaactatctttgctgccctggagatgaatttgttataaccatcaattgtcattcttgattccagtgtcgtgggattgtttattgcctcttcatgttcttttgatgttctgtaaatcggagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3594" stop="4850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3894" g_stop="4550" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E317092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3894" e_stop="4550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGC</genome_strand>
        <mrna_strand>TTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540260" ref_strand="+" ref_description="SGN-E540260 [TUS-60-H4](-)">
      <seq>tcatgttcttttgatgttctgtaaatcggagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacgacttcaaaaaaaaaaaaaaaaaaactcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3812" stop="54985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4112" g_stop="4628" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4750" g_stop="5003" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="771" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5004" i_stop="5655" i_length="652">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5656" g_stop="5681" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="797" r_length="26" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E540260" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4112" e_stop="4628"/>
          <exon e_start="4750" e_stop="5003"/>
          <exon e_start="5656" e_stop="5681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCCTTTGCTTCTGTTGTTTGTCTCGAAGTCTATACTGTTACTAATGGAGTACCTATTTTGGTTATCAGATGCTGCTTATGTGTAGTTGGTAAATGCAAAAGCATCGTTGGTATTGGAACAACTAAAGAAAATGCACGTCATATCTACTGATTTCTTTGCTAGTTTTTATCTCAAATCTTTAGTCATGATACATTTAAAACAATGTGTTCAAGTTTGAACAAGATGAGAGCAGTTCATCTGTCTTTTACCAGTAGTGAATGTATGCACTTCGTCGATGTTAGCACATATCGTATGCAAAAGCTAATATTACTACTCCAATGCTTAAATTTGTTCGTCTCTTTTGGACCACATAACATCTTTATGACTATAAGATAAAAAAAATATTTGGTAAAACTACAAGATTCAATGTTCTTTTAGTTTCCTGTCAAGTCATAACTCAATCAATAAATTAAGACGGAGTATTATTTCACTCTTCTTGATGATGACACTTGAGCCCAAAATGTGGTACACACCCCATCATGCAACACGCATTACAAAACTGATTTTGTCATACATAGAGCATTTTCTACCAACTAGTTTGTTTGTTTATTTGTGCACGTAATTTAGAGAGGACAACTATATGGAGTATCATATTCATATGTGCATGCAGAATTAACACAACCACCTGATTGTCGA</genome_strand>
        <mrna_strand>TCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548349" ref_strand="+" ref_description="SGN-E548349 [TUS-60-G5](-)">
      <seq>tttgatgttctgtaaatcgaagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacgacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3821" stop="5300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4121" g_stop="4628" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4750" g_stop="5009" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="768" r_length="260" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E548349" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4121" e_stop="4628"/>
          <exon e_start="4750" e_stop="5009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCC</genome_strand>
        <mrna_strand>TTTGATGTTCTGTAAATCGAAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230555" ref_strand="+" ref_description="SGN-E230555 [cLEL-35-K5](-)">
      <seq>gaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4112" stop="54980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4412" g_stop="4628" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4750" g_stop="5007" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="475" r_length="258" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E230555" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4412" e_stop="4628"/>
          <exon e_start="4750" e_stop="5007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTT</genome_strand>
        <mrna_strand>GAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230772" ref_strand="+" ref_description="SGN-E230772 [cLEL-35-K5](-)">
      <seq>gctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcacctagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcatttccattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4224" stop="54980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4524" g_stop="4628" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4750" g_stop="5007" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="364" r_length="258" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E230772" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4524" e_stop="4628"/>
          <exon e_start="4750" e_stop="5007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCA-CTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTT</genome_strand>
        <mrna_strand>GCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACCTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTCCATTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338894" ref_strand="+" ref_description="SGN-E338894 [cTOE-21-D11]">
      <seq>cgagggttggttgaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4467" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4761" g_stop="4994" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E338894" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4761" e_stop="4994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGA</genome_strand>
        <mrna_strand>CGAG-GGTTGGTTGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361598" ref_strand="+" ref_description="SGN-E361598 [cLPP-6-J16]">
      <seq>aagaaataaaaaaataaaaatggaaggtcaaaagtttgttgcagtgtttctgatgtgcatggttgtatttacagctgtgtgtgaagccacagaagaagagtatcaggattgctatcacacatgtcacgatgaatgcacagctaaacaaggacaaggttataccttttgtgagatgaagtgtgatgcagactgctccaagaaggatttcgttgctcaattccctaaattcaaggcttaatgaggaggaccaaagacatacaaagcagtcggattaatgtatttcttttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7659" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7953" g_stop="8165" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8166" i_stop="8236" i_length="71">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8237" g_stop="8306" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="280" r_length="68" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E361598" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7953" e_stop="8165"/>
          <exon e_start="8237" e_stop="8306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTGGTAATTTATTATATATATCTTTTATTTAACATCAAATTAAATGTGTTTTAATTCTTCTTACATTTTTGCAGCTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGATTAATTAAT</genome_strand>
        <mrna_strand>AAGAAATAAAA-AAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTGATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCCAAGAAGGATTTCGTTG.......................................................................CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACAT-A-CAAAGCAGTCGGATTAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335942" ref_strand="+" ref_description="SGN-E335942 [cTOE-6-C24]">
      <seq>tcatccaaattatatatttggtgtgaccaaaaaacataaacaagtactcttgtagatttatctgtcctcttaaaaactgctttttttgttttgttttcagaaagaaattatatggcaaatatttctacttgctcccttctcgttgctgctgtttttctagttggaatattgatgatcccatcggaaatattgggagaaacatgctatcaaatacacccagagatattgtgtgatgaaggcaaagttgaaggggaatgtttacctttctgcaatgacaaatttggatcctctgctggtggacaatgcattgagcaaattggctttgatggtcctttttgtgcatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9897" stop="8227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9597" g_stop="9438" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9437" i_stop="8717" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8716" g_stop="8527" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="350" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E335942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9597" e_stop="9438"/>
          <exon e_start="8716" e_stop="8527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAGGTAATATTTAACTACACACACGACATGTTTTTTCATTATATTGTATTTATTGATTTAATTTGTACTTGGTAGCATATATAATTTCTCCTATGTCTGTTTTTATAATCCATCTTTAATTGGACTAGACGATTAAGTTATAAGAAAGGAGAAGGATCTTGTTCGATTGATCCTTTTTATTCATGTTTAGTCCTTTTGTGTGCATCTTCAGAACCAATTTTTTGGAAATTAAAGCTAGATCAAAATCTAAGACTCGAATATAGCTTTCTATTGTTGTCTTGAATATTCCATATTTAATCTTATGTCCGTTCTTTTCTCTTTTTTTTTAATTTTGTCTACGTGGTATTCAGGGCCCACATTGGAGCTCTAACTAAATTTGTATGGCTAGGCCCTACTCGGATATGATACATCTTCAGGCCTCAAATCCGAAAGCTTTGATATATAAGAGTAAAACAGTCTCACCGTATCAAAACTCATGTTGTTGTTACATATCTATCAACATTAATATAGAAAAAGGAATTGATCGTGATTTTAAACTTGTTCTTTACATGTTGAGCTAATTGTTTAATTAATGGAGGTAGACGAGAAGTGATTAGGAAAATGATGGTTAAAAAAAACATGTGTACCATTGTATGTGGGTTAGAGAGAAAAATCAAATCAATTCATTAGAAGTGGATGATCTATGATTTTAAATGAAGTGTTTAATCTGTACGCATGCATGCAGTTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</genome_strand>
        <mrna_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553232" ref_strand="-" ref_description="SGN-E553232 [cTSB-3-E11]">
      <seq>tttttcaagaaatacaggcttccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15686" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15386" g_stop="15324" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="342" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="456" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="529" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="596" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13597" g_stop="13339" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="855" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E553232" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553232" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15386" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</genome_strand>
        <mrna_strand>TTTTTCAAGAAATACAGGCTTCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556509" ref_strand="-" ref_description="SGN-E556509 [cTSD-3-L16]">
      <seq>atgcggaagcaaggtgcatgacaaaagcttagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15541" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15328" g_stop="15324" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="285" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="399" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="472" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="539" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13597" g_stop="13339" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="798" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E556509" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15328" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGC-TAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</genome_strand>
        <mrna_strand>ATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350186" ref_strand="+" ref_description="SGN-E350186 [cTOS-4-G2]">
      <seq>atcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaagggtgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15298" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14998" g_stop="14962" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="151" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="224" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="291" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13597" g_stop="13342" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="547" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E350186" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14998" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCC</genome_strand>
        <mrna_strand>ATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGGTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292537" ref_strand="+" ref_description="SGN-E292537 [cLET-16-A22]">
      <seq>ggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtaaaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15342" stop="13061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15042" g_stop="14962" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="268" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13597" g_stop="13356" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="577" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E292537" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15042" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCAT</genome_strand>
        <mrna_strand>GGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAAAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731736" ref_strand="+" ref_description="SGN-E731736 [LA28AB08]">
      <seq>gtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgaatctactattatctgcattcttatttcacccgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16896" stop="13153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16596" g_stop="16552" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="108" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="225" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="504" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="618" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="691" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="758" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13453" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="903" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E731736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16596" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAA</genome_strand>
        <mrna_strand>GTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGAATCTACTATTATCTGCATTCTTATTTCACCCGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730131" ref_strand="+" ref_description="SGN-E730131 [LA23AF10]">
      <seq>ggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgntaattgtttgaattttgccttgtatctactattatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16885" stop="13174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16585" g_stop="16552" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="97" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="214" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="493" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="607" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="680" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="747" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13474" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="872" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E730131" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16585" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAA-TTTGCCTTGTATCTACTATTATCTGC</genome_strand>
        <mrna_strand>GGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGNTAATTGTTTGAATTTTGCCTTGTATCTACTATTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731556" ref_strand="+" ref_description="SGN-E731556 [LA27CA02]">
      <seq>gctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctncaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagacccaatctgtattcttgattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16899" stop="13237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16599" g_stop="16552" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="111" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="507" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="621" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="694" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="761" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13537" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="823" r_length="62" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E731556" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16599" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGA-CCAATCTGTATTCTTGATTATT</genome_strand>
        <mrna_strand>GCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTNCAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCCAATCTGTATTCTTGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708408" ref_strand="+" ref_description="SGN-E708408 [FA35CG05]">
      <seq>catatcttctaaatcctaactgcggtcgtccttcttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16955" stop="13243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16655" g_stop="16552" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="167" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="284" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="563" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="677" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="750" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="817" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13543" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="872" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E708408" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16655" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTG</genome_strand>
        <mrna_strand>CATATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731639" ref_strand="+" ref_description="SGN-E731639 [LA27DA02]">
      <seq>cggctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16899" stop="13246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16601" g_stop="16552" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="113" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="230" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="509" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="623" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="696" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="763" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13546" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="815" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E731639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16601" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTC</genome_strand>
        <mrna_strand>CGGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706015" ref_strand="+" ref_description="SGN-E706015 [FA28DB01]">
      <seq>cttcttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggcgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacctggagtgatgacatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16925" stop="13818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16625" g_stop="16552" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="137" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="533" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="647" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="720" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="787" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E706015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16625" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</genome_strand>
        <mrna_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGCGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340330" ref_strand="+" ref_description="SGN-E340330 [cTOF-2-I18]">
      <seq>cttcttcttcctcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16925" stop="13818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16625" g_stop="16552" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15441" i_length="1111">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="469" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="583" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="656" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="723" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E340330" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16625" e_stop="16552"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</genome_strand>
        <mrna_strand>CTTCTTCTTC-CTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264129" ref_strand="+" ref_description="SGN-E264129 [cLEG-64-B3]">
      <seq>ttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16027" stop="14027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="78" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="474" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="588" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="661" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E264129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449938" ref_strand="+" ref_description="SGN-E449938 [cSTS-7-N20]">
      <seq>ccaaattcccaaatctcctaaaccttaaccgcgacttcattgtcgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccggatacttgctgcatatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16964" stop="14072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16628" g_stop="16552" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="118" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="202" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="319" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="598" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="712" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14372" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="740" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E449938" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16628" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGA</genome_strand>
        <mrna_strand>GTCGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGGATACTTGCTGCATATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551189" ref_strand="+" ref_description="SGN-E551189 [TUS-55-L1]">
      <seq>cttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttccacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16027" stop="14072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="79" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="475" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14399" g_stop="14372" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="617" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E551189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGA</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCCACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689002" ref_strand="+" ref_description="SGN-E689002 [t3_tus_55_L01]">
      <seq>cttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttccacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcctgtggaaatgtgatggaccgtatacttgctgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16027" stop="14076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="79" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="475" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14399" g_stop="14376" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="613" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E689002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATAT</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCCACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCCTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486868" ref_strand="+" ref_description="SGN-E486868 [cSTE-23-B17]">
      <seq>cgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactcttcttgtggaaatgtgatggacccgatacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16926" stop="14389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16626" g_stop="16552" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="669" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14389" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="680" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E486868" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16626" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTAT</genome_strand>
        <mrna_strand>CGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439000" ref_strand="+" ref_description="SGN-E439000 [cSTA-10-D19]">
      <seq>attttatcttgtttctctgttgaggatatcagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15772" stop="14406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15472" g_stop="15324" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="428" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14804" g_stop="14706" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="527" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E439000" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15472" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCT</genome_strand>
        <mrna_strand>ATTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327626" ref_strand="+" ref_description="SGN-E327626 [cTOC-20-N11]">
      <seq>ttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcgaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtacaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacgggtgaatgcggaagcaaggcgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgagagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacgacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactatggactaagctttacttcaacgcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16921" stop="14464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16621" g_stop="16552" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="133" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="250" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="529" r_length="279" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14764" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="570" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E327626" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16621" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCC</genome_strand>
        <mrna_strand>TTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTACAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGGTGAATGCG...................................................................................GAAGCAAGGCGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAGAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACGACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTATGGACTAAGCTTTACTTCAACGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306133" ref_strand="+" ref_description="SGN-E306133 [cLEY-13-J2]">
      <seq>ctgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaagctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaagaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtagttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaagagtcttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16908" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16608" g_stop="16552" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="120" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="237" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="517" r_length="280" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14768" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="554" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E306133" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16608" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGT-GTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGC</genome_strand>
        <mrna_strand>CTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAAGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAAGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTAGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGAGTCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476238" ref_strand="+" ref_description="SGN-E476238 [cSTB-43-F8]">
      <seq>cattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16930" stop="14470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16632" g_stop="16552" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="165" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="561" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14769" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="597" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E476238" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16632" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACG</genome_strand>
        <mrna_strand>CATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464438" ref_strand="+" ref_description="SGN-E464438 [cPRO-18-C1]">
      <seq>cgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16926" stop="14476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16626" g_stop="16552" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14776" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="584" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E464438" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16626" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTAC</genome_strand>
        <mrna_strand>CGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485713" ref_strand="+" ref_description="SGN-E485713 [cSTE-19-O15]">
      <seq>cgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16926" stop="14478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16626" g_stop="16552" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14778" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="582" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E485713" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16626" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTT</genome_strand>
        <mrna_strand>CGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486084" ref_strand="+" ref_description="SGN-E486084 [cSTE-21-A5]">
      <seq>cttcattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgangagttctgccaatcagctggtgctgattgactttggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16930" stop="14484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16636" g_stop="16552" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="168" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="285" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="564" r_length="279" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14784" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="585" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E486084" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16636" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTA</genome_strand>
        <mrna_strand>CTTC-ATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGANGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482116" ref_strand="+" ref_description="SGN-E482116 [cSTD-21-A5]">
      <seq>cttcattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactanttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16930" stop="14735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16636" g_stop="16552" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="168" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="285" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="15034" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="492" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E482116" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16636" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="15034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTA</genome_strand>
        <mrna_strand>CTTC-ATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTANTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244393" ref_strand="+" ref_description="SGN-E244393 [cLEF-3-J13]">
      <seq>aatcttctatatcctaactgcggtcgtccttcttcttcactcatactgtccaaagctgtgcggtctgcggtggcggagctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggcgtattatcaaggaacggttttcaaagaaatacacgcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctgtggactagttggagttgaccaataacgaatggctgatattacaacacagattgggaatgctattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16953" stop="14739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16653" g_stop="16552" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="165" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="15039" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="484" r_length="202" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E244393" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16653" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="15039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAA</genome_strand>
        <mrna_strand>AATCTTCTATATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCAAAGCTGTGCGGTCTGCGGTGGCGGAGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGCGTATTATCAAGGAACGGTTTTCAAAGAAATACACGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTGTGGACTAGTTGGAGTTGACCAATAACGAATGGCTGATATTACAACACAGATTGGGAATGCTATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444373" ref_strand="+" ref_description="SGN-E444373 [cSTA-42-P3]">
      <seq>tggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16883" stop="14760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16583" g_stop="16552" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="233" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="15060" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="414" r_length="181" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E444373" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16583" e_stop="16552"/>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="15060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACAC</genome_strand>
        <mrna_strand>TGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297090" ref_strand="+" ref_description="SGN-E297090 [cLEW-2-M20]">
      <seq>aaatttatcacttctctaaaacttttggggaccaaattcccaaatcttctaaatcctaactgcggtcgtccttcttcttcactcatactgcccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggcgttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcgtgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgctgacactgttatgcacactctcacctctgaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16995" stop="14841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16695" g_stop="16552" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="207" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="324" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="15141" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="424" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E297090" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16695" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="15141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTG</genome_strand>
        <mrna_strand>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGCCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGCGTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCGTGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGCTGACACTGTTATGCACACTCTCACCTCTGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444377" ref_strand="+" ref_description="SGN-E444377 [cSTA-42-P15]">
      <seq>tcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16049" stop="14842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15746" g_stop="15663" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="98" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="215" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15240" g_stop="15142" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="314" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E444377" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15746" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="15142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTT</genome_strand>
        <mrna_strand>TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358879" ref_strand="+" ref_description="SGN-E358879 [cLHT-24-K11]">
      <seq>aattcccaaatcttctaaatcctaactgcgacattgtcgtccttcttcttcactcatactgtccgaagctgtgcggttcgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctgtgagtttatatttagttcatataaaactttcctgtaatatttctgatctttttccctcacttttttgggaaagaaattgtgttcgcatgtgtcttttgtttagtttatgagttaataataatttatactactgtttctgccaatgttaatttgatggcaagtagttgttgactctagaatttctgtaacactttatcttgtttctctgttgaggatatcagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16961" stop="15089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16661" g_stop="16552" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15389" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="452" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E358879" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16661" e_stop="16552"/>
          <exon e_start="15725" e_stop="15389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCCAAATCTTCTAAATCCTAACTGCG-----GTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</genome_strand>
        <mrna_strand>AATTCCCAAATCTTCTAAATCCTAACTGCGACATTGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTCGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCCCTCACTTTTTTGGGAAAGAAATTGTGTTCGCATGTGTCTTTTGTTTAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTAATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGTAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318097" ref_strand="+" ref_description="SGN-E318097 [cTOA-29-D5]">
      <seq>ttttcggtgtaaccattagagtttgctaacacaattggtggatggctcctctaaagaaatccaagaaagattctaacaagttgaagaaaatcaaagccaaaaacaagaaaaacaacattgttcctgctgagaacaaaggaactgaatgcgattggtgggatagtttctggcacaagaataaaacatcaaccccaggttctggtgtacctagtgatgaagaggaaggtttcaagtattttttccgtgtttccaacaagacttttgattacatatgttcacttgtaagggaggaccttatctcaagacctccttcaggtctgataaacattgagggaagacttcttagtgttgagaagcaagttgcgattgcattgagaagattggcttctggtgaatcccaagtttcagttggggcatcatttgggggtgggcagtccactgtggctcaaggtacctggagaatcattgaaggactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17318" stop="19167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17618" g_stop="17812" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17813" i_stop="18584" i_length="772">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18585" g_stop="18867" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="478" r_length="283" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E318097" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17618" e_stop="17812"/>
          <exon e_start="18585" e_stop="18867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAGGTCCCTCTCTGCTCAAATTTACATTCTTTAACAACATTTTCTCAAATTCTATTGTTTTTTCGATTCCATTTCACTTATTAATTCGATTGGGGTGTTGGTAAGTGTCAAGATTGGAGCTTTGAAGTCTGATTTCTGCAAATATAGTTCGTTATTTTAACCCTTATTTGTTAAATTCGCAAAGCATTCAAGGGGATTCACGTATATAGAATATGTGCATAAAAGAATTGTTTTTGACAGCCCTTGTAGACAAGATGGCTCCACTCCCTGTAGGTTGAAGGGTTGTGTGAAAAATAATCTAATTATTCATGTTGTTGACTCTAACTAGCTAAATTGATTGACTTACTGCATTTACTTGAAGTCAGGTCTCTAAAATAGGAAGAGAAGAGGTTACTTAAGACTCCTGTTATAAATGATCTCTCTTAATAGTCTAATTTATTCTAGTGAAATCCAAGGCGTTGTAGATATTGTCAAAGGCGGAACGTCTTGTTATTGTTCTAGTTAGCATAATAATTAAAAAAAATCATTCTTAGGTTTGTAATGTGGTTGTTGTCCACTTGTCCTTAGAAAGATGAAGGTTTTCCCACATAAGCAAGTTTGAGAGATGCCAATAGAATGGAGTTGTCTGCTAGGATATTTTATGTAACAACAGTCTCGGAACCCGTCTTATTTCTTTTTAATCTTTGCAACTTTTTCCTGTAAGGTCATTTTGGATCTTTATTTTTTTTCTTTTTGTTGCAGGAATTAACTCACTCTTATACTTTTTATCTTGCAGGTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGA</genome_strand>
        <mrna_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGGTGGGCAGTCCACTGTGGCTCAAGGTACCTGGAGAATCATTGAAGGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698300" ref_strand="+" ref_description="SGN-E698300 [FA05DE06]">
      <seq>ccgttttgctaacacaattggtggatggctcctctaaagaaatccaagaaagattctaacaagttgaagaaaatcaaagccaaaaacaagaaaaacaacattgttcctgctgagaacaaaggaactgaatgcgattggtgggatagtttctggcacaagaataaaacatcaaccccaggttctggtgtacctagtgatgaagaggaaggtttcaagtattttttccgtgtttccaacaagacttttgattacatatgttcacttgtaagggaggaccttatctcaagacctccttcaggtctgataaacattgagggaagacttcttagtgttgagaagcaagttgcgattgcattgagaagattggcttctggtgaatcccaagtttcagttggggcatcatttggggttgggcagtccactgtgtctcaggttacctggagattcattgaggcactggaagaacgtgcaaagcaccatcttaagtggccagaacctagtaagatggatataatcaagtctgagtttgaacaatcatttggtttgcctaactgttgtggagcaattgatgcaactcacatcataatgactcttcctgctattcaaacctcagatgattggtgtgatcaagaaagcaattacagcatgcttttgcaaggtattgtggacagcgagatgcgttttttagacataatgacaggatggcctggggggcatgaccacttcaaggctgttcaagtgctctggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17339" stop="19457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17635" g_stop="17812" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17813" i_stop="18584" i_length="772">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18585" g_stop="19158" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="753" r_length="575" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E698300" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17635" e_stop="17812"/>
          <exon e_start="18585" e_stop="19158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAGGTCCCTCTCTGCTCAAATTTACATTCTTTAACAACATTTTCTCAAATTCTATTGTTTTTTCGATTCCATTTCACTTATTAATTCGATTGGGGTGTTGGTAAGTGTCAAGATTGGAGCTTTGAAGTCTGATTTCTGCAAATATAGTTCGTTATTTTAACCCTTATTTGTTAAATTCGCAAAGCATTCAAGGGGATTCACGTATATAGAATATGTGCATAAAAGAATTGTTTTTGACAGCCCTTGTAGACAAGATGGCTCCACTCCCTGTAGGTTGAAGGGTTGTGTGAAAAATAATCTAATTATTCATGTTGTTGACTCTAACTAGCTAAATTGATTGACTTACTGCATTTACTTGAAGTCAGGTCTCTAAAATAGGAAGAGAAGAGGTTACTTAAGACTCCTGTTATAAATGATCTCTCTTAATAGTCTAATTTATTCTAGTGAAATCCAAGGCGTTGTAGATATTGTCAAAGGCGGAACGTCTTGTTATTGTTCTAGTTAGCATAATAATTAAAAAAAATCATTCTTAGGTTTGTAATGTGGTTGTTGTCCACTTGTCCTTAGAAAGATGAAGGTTTTCCCACATAAGCAAGTTTGAGAGATGCCAATAGAATGGAGTTGTCTGCTAGGATATTTTATGTAACAACAGTCTCGGAACCCGTCTTATTTCTTTTTAATCTTTGCAACTTTTTCCTGTAAGGTCATTTTGGATCTTTATTTTTTTTCTTTTTGTTGCAGGAATTAACTCACTCTTATACTTTTTATCTTGCAGGTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCT-GGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</genome_strand>
        <mrna_strand>CCGTTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAAGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAATGACAGGATGGCCTGGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702647" ref_strand="+" ref_description="SGN-E702647 [FA19BC02]">
      <seq>gcgccattgacgtctgtcatattgggaacgattctcgtttatataacgcatgctgaaaaacacggtgttgctgtgattggagagctgaagaaagggataaatccaccatcaataatggatctgtcgtttggatcgaaatatatgacaacggctatcaaaactggcatagtcacgggtgtcattgcccttgctgaaggaatagcagtaggtcgaagttttgcaatgttcaagaattaccatatagatggtaacaaagagatgattgcttttgggatgatgaacattgttggctcatgcacttcttgttacctcactactgggccattctcgcgatcagcagtgaacttcaatgctggatgcaaaacagcagtatcaaacattgtcatggcgttggctgtgatggtgacgttgctattgctaacgccattgttccacttcactcctctcgtcgtgttgtcatccattattattgctgccatgctcggactcatcgactataatgctgccattcatctctggcatgtcgacaaattcgacttcctcgtttgcatgagtgcatacattggtgttgtctttggcaacattgaaattggcttagtcatggctgttggcttatcgttgctaagggtattactttctgtagcaaggccaaggactttagtacttggtaatattcccaattctatgatctacagaaatgtggagcaatatccaaatacaaacaacgttccaggcgttctcatacttgacattggagctcctattttcttcactaactcaagctatttaagagagaggatctcaaggtggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23894" stop="21632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23594" g_stop="23520" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23519" i_stop="23210" i_length="310">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23209" g_stop="23093" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="192" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23092" i_stop="22967" i_length="126">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22966" g_stop="22840" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22839" i_stop="22619" i_length="221">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22618" g_stop="22332" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="606" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22331" i_stop="22250" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22249" g_stop="22059" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="797" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22058" i_stop="21950" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21949" g_stop="21932" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="815" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E702647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23594" e_stop="23520"/>
          <exon e_start="23209" e_stop="23093"/>
          <exon e_start="22966" e_stop="22840"/>
          <exon e_start="22618" e_stop="22332"/>
          <exon e_start="22249" e_stop="22059"/>
          <exon e_start="21949" e_stop="21932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTGGTAACAATTTTTAATTCTATTAGTTAAGTTATGGTTACATTTTAGGAGCTACATTATCAAATACATAACATAAATAAAACATGAACATGAACAAGAGACTTGTCAATTAGTTATCCGTAGCTGTAGTTTTGGTCGCACTCAATGACAAAAAAACGACAACAAATTAAGTGAGTTCAAATTTGTGTCTGTCATGTCACTCACGGGTAGAGCATTGCGGCTTGTGTAGGGATTATTTTATTCCTTAATAATCCGAAAATGCTCAAAATAATATGTCACCCATTTTGTGGAATAATATAATGTAATATTACAGATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCTGTAAGCTGCTTTGTTTCCATCTGCGTTTTTCACTACAAACATACACATATTTTAAAAAGCTTATTTAAATGGTCTTTTTTAGGAAGGCAATGTTATTCGATAAGTAATAAAAATACTTGTGTACAGGAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTGGTATACTCAAATATCCTTGGGCCGAAAGTTCATTTATTTTGATTTGGACTAGCTAGTATCAATGTCACTTGGGCCCATATACCATGTGATTGATTAATCCACAATTTGTCCACTAAAATAAGATATTGGAAAAGAGAACCACACTTACTTGTCAAAATGTTTGATAGCGTATACAAGTTAAACTCGTAGGCTGAAAAATAAATGAATGTGCGTGCGTGCAGGGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCTGTAACTACTACTACTACTACTTCCTAATGTATATGTCACTTAAAAGAAGATAAAGTTAAAACTTTTTGTATTGTAAATGCAGGTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAGGTAATAATTTAACTAATGTATTATATATACTACCAAGTTGTAAGTATACAATACCAACAGTCTCTTTCTACAAATACTAACTATTCGCTAATTCAATTTCCTGTTATAGGATCTCAAGGTGGATTGA</genome_strand>
        <mrna_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG......................................................................................................................................................................................................................................................................................................................ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT..............................................................................................................................GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG.............................................................................................................................................................................................................................GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT..................................................................................GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG.............................................................................................................GATCTCAAGGTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745294" ref_strand="+" ref_description="SGN-E745294 [GI|47105784]">
      <seq>gattgtaagatgtggcagcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgtgcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatctattgtataaatcaataattttttttattacgaaactcgttgttagtatttgtaaggttgatggatatgtgagtgaccaaaagttgatagctgaaatattatattgtataaaggggttatatctgcaaaacatttgccctttggggcaaagttgaaatatatagtagccgcaaaaaagaagtttgagtgaatcagccctacttttcggcctaaatccaaatttggttgctgttttggcaacaattttacttgaagcaaaactcatattgggctttgtcacccatgccttggaaagtcagatcttgggcttcaactagcaggtgtacttgggaaaaatcccaaagtttgtgggtgtactatagttcgacttcatatatagacagattgagaatgaacgttttctttgaaaaaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37132" stop="35093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36833" g_stop="36563" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36483" g_stop="36370" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="385" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36300" g_stop="36143" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="543" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36065" g_stop="35394" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="1215" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1241"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E745294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36833" e_stop="36563"/>
          <exon e_start="36483" e_stop="36370"/>
          <exon e_start="36300" e_stop="36143"/>
          <exon e_start="36065" e_stop="35394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</genome_strand>
        <mrna_strand>GATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGTGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACCCATGCCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392098" ref_strand="+" ref_description="SGN-E392098 [TUS-24-D16](-)">
      <seq>gggggctggattagctctctatattctttttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatttattgtataaatcaataatttttatttattacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36911" stop="35467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36612" g_stop="36563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36483" g_stop="36370" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="164" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36300" g_stop="36143" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="322" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36065" g_stop="35767" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="622" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E392098" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36612" e_stop="36563"/>
          <exon e_start="36483" e_stop="36370"/>
          <exon e_start="36300" e_stop="36143"/>
          <exon e_start="36065" e_stop="35767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTT-TTTATTACGAAA</genome_strand>
        <mrna_strand>GGGGGCTGGATTAGCTCTCTATATTCTTTTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATTTATTGTATAAATCAATAATTTTTATTTATTACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392099" ref_strand="+" ref_description="SGN-E392099 [TUS-24-D16]">
      <seq>cagcatacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtacgattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccgcgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37118" stop="35685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36818" g_stop="36563" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36483" g_stop="36370" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="370" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36300" g_stop="36143" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="528" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36065" g_stop="35985" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="609" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E392099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36818" e_stop="36563"/>
          <exon e_start="36483" e_stop="36370"/>
          <exon e_start="36300" e_stop="36143"/>
          <exon e_start="36065" e_stop="35985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</genome_strand>
        <mrna_strand>CAGCATACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTACGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCGCGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247658" ref_strand="+" ref_description="SGN-E247658 [cLEF-42-C21]">
      <seq>agcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37117" stop="35714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36817" g_stop="36563" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36483" g_stop="36370" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="369" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36300" g_stop="36143" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="527" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36065" g_stop="36014" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="579" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E247658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36817" e_stop="36563"/>
          <exon e_start="36483" e_stop="36370"/>
          <exon e_start="36300" e_stop="36143"/>
          <exon e_start="36065" e_stop="36014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</genome_strand>
        <mrna_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418342" ref_strand="+" ref_description="SGN-E418342 [STM-27-E24]">
      <seq>aacaacttcatcagctagcttggatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatgaatccattgcgtttatttccccttgtttgtttatcctataacatgtctcatttgttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42615" stop="43792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42915" g_stop="43562" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E418342" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42915" e_stop="43562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</genome_strand>
        <mrna_strand>AACAACTTCATCAGCTAGCTTGGATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGA-T---TA---CAT---G-A-TGAATCCATTGCGTTTATTTCCCCTTGTTTGTTTATCCTATAACATGTC-TCATTTGTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441087" ref_strand="+" ref_description="SGN-E441087 [cSTA-29-K5]">
      <seq>aacaacttcttcagctagcttttatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42615" stop="43786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42915" g_stop="43486" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E441087" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42915" e_stop="43486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTG</genome_strand>
        <mrna_strand>AACAACTTCTTCAGCTAGCTTTTATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGATTACATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340840" ref_strand="+" ref_description="SGN-E340840 [cTOF-5-P5]">
      <seq>tcggaaactgaggttggggatgcgcaccagatttctgcttatgtcttgaaatgttcggaggccacatcatgttgtagtgtacggatagttgcatgaagtgtgatgatggtagcacttgggacaatatctgtgaaactgccttatctatctaggtttgtctgtaatgtaaatgaagatagaattagtgagaaatagtggtcaagtcatgaaaccttttttgcttttcgtataacagctagtcgccctcttcaatattgattttaggctgcagcatttccctgttgatggaaccattctcaatgatcttgcttacttggaattatacgtccaattttgttgctgggagctggagacaaaccagcggaactgcatgacatagaatgtgaatgggtcatgctctctgatgatccttgacgtttaaaataagctttcctgttccgttgtttgatcgaaataacgtgattgaaggcttaatttcttcttcaagtttgtcatttcagctatttattgactaggactgcattgcaggatactgcacatgcgaagaagtattgggaaagaattgncttctcctctacttatgtttctttccctttatataatacctacctttctnctgtaaaatcttaagttcaagatcatgatagcacatgtatgattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43537" stop="44801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43837" g_stop="44501" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E340840" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43837" e_stop="44501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</genome_strand>
        <mrna_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGNCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTNCTGTAAAATCTTAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355353" ref_strand="+" ref_description="SGN-E355353 [cTOS-18-J22]">
      <seq>gaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53397" stop="50604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53314" g_stop="53306" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="142" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50908" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="695" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50907" i_stop="50653" i_length="255">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50652" g_stop="50641" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="707" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E355353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53314" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50908"/>
          <exon e_start="50652" e_stop="50641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAAT</genome_strand>
        <mrna_strand>GAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353677" ref_strand="+" ref_description="SGN-E353677 [cTOS-10-N9]">
      <seq>gaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatggtttcatattgttggtatgtggcttggtgatgcatgtatgacactggttatcttgacactcagtttccaatatagtgtctgcaaaagtggttgaggtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53397" stop="50604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53314" g_stop="53306" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="142" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50908" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="694" r_length="552" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50907" i_stop="50653" i_length="255">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50652" g_stop="50642" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="705" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E353677" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53314" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50908"/>
          <exon e_start="50652" e_stop="50642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAA</genome_strand>
        <mrna_strand>GAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGGTTTCATATTGTTGGTATGTGGCTTGGTGATGCATGTATGACACTGGTTATCTTGACACTCAGTTTCCAATATAGTGTCTG-CAAAAGTGGTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687714" ref_strand="+" ref_description="SGN-E687714 [T3_tus_79_J07]">
      <seq>ttgaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaagatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53362" stop="50552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53064" g_stop="52963" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51308" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="255" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51307" i_stop="51168" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51167" g_stop="50852" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="571" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E687714" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53064" e_stop="52963"/>
          <exon e_start="51460" e_stop="51308"/>
          <exon e_start="51167" e_stop="50852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>TTGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAAGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320015" ref_strand="+" ref_description="SGN-E320015 [cTOB-31-O21]">
      <seq>ggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaggatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53363" stop="50552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53063" g_stop="52963" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51308" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="254" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51307" i_stop="51168" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51167" g_stop="50852" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="570" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E320015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53063" e_stop="52963"/>
          <exon e_start="51460" e_stop="51308"/>
          <exon e_start="51167" e_stop="50852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315970" ref_strand="+" ref_description="SGN-E315970 [cTOA-26-N18]">
      <seq>gcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggntagctaatgacagggcactggtgggtgtgtttgattagaataattatctgatgtaatgaacttctgaacatattaagttgatgttttcatattgttggaatgtggcttggtgatgcatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53397" stop="50661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53317" g_stop="53306" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="145" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50958" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="648" r_length="503" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E315970" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53317" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTG</genome_strand>
        <mrna_strand>GCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGNTAGCTAATGACAGGGCACTGGTGGGTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAAGTTGATGTTTTCATATTGTTGGAATGTGGCTTGGTGATGCATGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622274" ref_strand="+" ref_description="SGN-E622274 [72639]">
      <seq>gtactttcgtcttcccgaatctctcatctcatcagttttattgcatttctgggaaaatttagcagaaaatcagttttgaaataaggaaaatggcaggaaaaggagggaaagggctagtggcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaagccaatctctcgttcatctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaacaccaaagagtgaaattctcctgtgttatcttagatgtatcttgactaataacatcgcctgtgcttatgtttttttcctctttatctgggttgactaatgacagcactgttggttgtgttcgatttagaataactttatctgatgtaatgaacttatgaacatattagtttgatgtttcatttggtggtcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53642" stop="50686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53342" g_stop="53306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="73" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="206" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50988" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="678" r_length="472" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E622274" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53342" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCGTCTCTGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATG-TTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGA-TTAGAATAA--TTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGT</genome_strand>
        <mrna_strand>TTTATTGCATTTCTGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTGAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTGGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAGCCAATCTCTCGTTCATCTCGTGCGGGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAA-CACCAAAGAGTGAAATTCTCCTGTGTTATCTTAGATGTATCTTGACTAATAACATCGCCTGTGCTTATGTTTTTTTCCTCTTTATCTGGGTTGACTAATGACA--GCACTGTTGGTTGTGTTCGATTTAGAATAACTTTATCTGATGTAATGAACTTATGAACATATTAGTTTGATG-TTTCAT-TTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560270" ref_strand="+" ref_description="SGN-E560270 [19898]">
      <seq>catctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaagagtgaaattctcctgtgttatcttagatgtatcttgactaataacatcgcctgtgcttatgtttttttcctctttatctgggttgactaatgacagcactgttggttgtgtttgattagaataacttatctgatgtaatgaacttatgaacatattagtttgatgttttcattttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51773" stop="50691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51460" g_stop="50991" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="490" r_length="470" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E560270" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51460" e_stop="50991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATG-TTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAA-TTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTT</genome_strand>
        <mrna_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAAGAGTGAAATTCTCCTGTGTTATCTTAGATGTATCTTGACTAATAACATCGCCTGTGCTTATGTTTTTTTCCTCTTTATCTGGGTTGACTAATGACA--GCACTGTTGGTTGTGTTTGATTAGAATAACTTATCTGATGTAATGAACTTATGAACATATTAGTTTGATGTTTTCATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342778" ref_strand="+" ref_description="SGN-E342778 [cTOF-7-M2]">
      <seq>tgggaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggtttgtgtttgattagaataattatctgatgtaatgaactttctgacatattagtttgatgttttcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53629" stop="50694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53329" g_stop="53306" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="157" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50994" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="625" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E342778" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53329" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGG-TTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATT</genome_strand>
        <mrna_strand>TGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTTCTGACATATTAGTTTGATGTTTTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343033" ref_strand="+" ref_description="SGN-E343033 [cTOF-11-A12]">
      <seq>aaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53625" stop="50695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53325" g_stop="53306" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="153" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50995" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="619" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E343033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53325" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATAT</genome_strand>
        <mrna_strand>AAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342954" ref_strand="+" ref_description="SGN-E342954 [cTOF-11-O6]">
      <seq>aataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgagttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttacgctctatctgggttagctaatgacagggcactgttggttgtgtttgattagaataatcatctgatgtaatgaacttctgaacatattagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53389" stop="50704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53089" g_stop="52963" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51004" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="584" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E342954" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53089" e_stop="52963"/>
          <exon e_start="51460" e_stop="51004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATG</genome_strand>
        <mrna_strand>AATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGAGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTACGCTCTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATCATCTGATGTAATGAACTTCTGAACATATTAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297277" ref_strand="+" ref_description="SGN-E297277 [cLET-29-G22]">
      <seq>aaaatcagttttcaaataaggaatatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgtttattccgctttaactgggttagctaatgacagggcactgttggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53397" stop="50758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53313" g_stop="53306" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="141" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="51058" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="544" r_length="403" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E297277" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53313" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="51058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTG</genome_strand>
        <mrna_strand>AAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAATATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTATTCCGCTTTAACTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323424" ref_strand="+" ref_description="SGN-E323424 [cTOC-7-A20]">
      <seq>gaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctantatcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgggttatcttagatgtatcttgactaatgacattgccctggcttatgttttttcccctttatctgggttagctaatgacagggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53626" stop="50768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53326" g_stop="53306" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="51068" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="547" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E323424" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53326" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="51068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACT</genome_strand>
        <mrna_strand>GAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTANTATCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGGGTTATCTTAGATGTATCTTGACTAATGACATTGCCCTGGCTTATGTTTTTTCCCCTTTATCTGGGTTAGCTAATGACAGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291576" ref_strand="+" ref_description="SGN-E291576 [cLET-6-M8]">
      <seq>gaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtatcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgtgcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacaacagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgccactggccattcttggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagttcctcataaacaaaaccacctaggagtgaaattctcttgagctatcttagatgtatcttgactaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53626" stop="50825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53326" g_stop="53306" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="51125" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="490" r_length="336" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E291576" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53326" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="51125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGA</genome_strand>
        <mrna_strand>GAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTATCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTGCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAACAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCCACTGGCCATTCTTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTTCCTCATAAACAAAACCACCTAGGAGTGAAATTCTCTTGAGCTATCTTAGATGTATCTTGACTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574599" ref_strand="+" ref_description="SGN-E574599 [34092]">
      <seq>agacaacagctgcagcggctgccaacacggagaaatacaagaaaaagcgaatctctcgttcatctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtattgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53342" stop="50897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53042" g_stop="52963" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51197" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E574599" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53042" e_stop="52963"/>
          <exon e_start="51460" e_stop="51197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCAC</genome_strand>
        <mrna_strand>AGACAACAGCTGCAGCGGCTGCCAACACGGAGAAATACAAGAAAAAGCGAATCTCTCGTTCATCTCGTGCGGGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTATTGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322772" ref_strand="+" ref_description="SGN-E322772 [cTOB-30-E23]">
      <seq>gaaagggctagtagcggggaagattcagctgcagcgtttttcccaaggagaaagactagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53362" stop="51021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53062" g_stop="52963" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51321" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="238" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E322772" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53062" e_stop="52963"/>
          <exon e_start="51460" e_stop="51321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</genome_strand>
        <mrna_strand>GAAAGGGCTAGTAGCGGGGAAGA-TTCAGCTGCAGCGTTTTTC-CCAAGGAGAAAGACTAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747645" ref_strand="+" ref_description="SGN-E747645 [GI|3043894]">
      <seq>ggttcgatcctatcgaaagaacattttagaagcgagctatgttaaagtgagcatggatggtgcggcttatttaaggaaaattgatcttaatacttacaaaagttatccacaattactcaaggctttagagaacatgttcaagtgctctattgatgtatattcagaaacagatggatacaacggatgtaattatataccaacttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63223" stop="62340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62923" g_stop="62772" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62771" i_stop="62696" i_length="76">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62695" g_stop="62640" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E747645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62923" e_stop="62772"/>
          <exon e_start="62695" e_stop="62640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTGGTAAGTTTTAACATAACTATTAGTGGTCAATTCTTTTAATCAGAGTCTTATGATTTTTTATATATATAAAATTCAGATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</genome_strand>
        <mrna_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG............................................................................ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550772" ref_strand="+" ref_description="SGN-E550772 [TUS-50-J7]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65185" stop="66387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65485" g_stop="66087" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E550772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65485" e_stop="66087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688455" ref_strand="+" ref_description="SGN-E688455 [t3_tus_50_j07]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65185" stop="66387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65485" g_stop="66087" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E688455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65485" e_stop="66087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211506" ref_strand="+" ref_description="SGN-E211506 [cLEC-67-B18]">
      <seq>atatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcangaagacgtttgcaatgagaatgatcttccacacccataaaatctgcgcataccttcatggaaccaaaaaaaaaaacaaattacttccggaaacagcctttctaccccacaaaggcagggatatgatctgcgtacatgttaccatacctagatcccacttgtgagatacactagcatgttgttagatacaaattacttgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65186" stop="66546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65486" g_stop="66246" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E211506" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65486" e_stop="66246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</genome_strand>
        <mrna_strand>ATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCANGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACC-AAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGA-TACACTAGCATGTTGTTAGAT-ACAAATTACTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319647" ref_strand="+" ref_description="SGN-E319647 [cTOB-12-I18]">
      <seq>cgcctccggcgttgctttcatcggcgagggtttgtaaggggtggttggaaagttctagaaggatctggaagtctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctcttagaatggaaagtgacattgatgctaccatgttggcctgcattgctttttcctgtcctaaactggattcgatggagatacttatgtgtaatacctcagtcaatcggatcactggggatgaattgggtcgttttgttgctgagaaaagatctcttactaatctcaagatggaaggttgctctaatcttgggggtttcactctttgctcaaccagtctttcaactctttcgctttcagatctctattgtcatgctaagatggtcttcaactgccccaacttgaaggatgtttccctggatttttctcaccaagaaaatgacaccaccgatcttactctcatggtcgatggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70156" stop="67964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69856" g_stop="69676" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69426" g_stop="69325" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68436" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="428" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68356" g_stop="68264" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E319647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69856" e_stop="69676"/>
          <exon e_start="69426" e_stop="69325"/>
          <exon e_start="68580" e_stop="68436"/>
          <exon e_start="68356" e_stop="68264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</genome_strand>
        <mrna_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424428" ref_strand="+" ref_description="SGN-E424428 [STM-43-F23]">
      <seq>ccaccctccgttgttcgtcctcagccgccacctcccatgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgatggggagttctccgatctggataacgaatcggatctagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgaaggtttgtaaggggtggtcggaaacttctagaaggatctggaaatctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctctaagattggaaagtgacattgatgcaaccatgttggcctgcattgcattttcctgtcctaaactggattcaatggagatacttatgtgtaattcagtcaatcggatcactggggatgagttgggtcgttttgttgctgagaaaagatgtcttactaatctcaagatggaaggttgctctaatcttgggggggtttactctttgctcaaccagtctttcaactctttcactttcagatctctattgtcatgctaagatggtcttcaactgccccancttgnaggatgtttccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70385" stop="68020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="69676" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69426" g_stop="69325" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="509" r_length="99" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68436" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="655" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68356" g_stop="68320" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="692" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E424428" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="69676"/>
          <exon e_start="69426" e_stop="69325"/>
          <exon e_start="68580" e_stop="68436"/>
          <exon e_start="68356" e_stop="68320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTT-GGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGG</genome_strand>
        <mrna_strand>CCACCCTCCGTTGTTCGTCCTCAGCCGCCACCTCCCATGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGATGGGGAGTTCTCCGATCTGGATAACGAATCGGATCTAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAAGGTTTGTAAGGGGTGGTCGGAAACTTCTAGAAGGATCTGGAAATCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTAAGATTGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCAACCATGTTGGCCTGCATTGCATTTTCCTGTCCTAAACTGGATTCAATGGAGATACTTATGTGTAAT---TCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGTTGGGTCGTTTTGTTGCTGAGAAAAGATGTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGGGTTTACTCTTTGCTCAACCAGTCTTTCAACTCTTTCACTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCANCTTGNAGGATGTTTCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452385" ref_strand="+" ref_description="SGN-E452385 [cSTS-16-J23]">
      <seq>ccaccctccgttgttcgtcctcagccgccacctcccatgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgatggggagttctccgatctggataacgaatcggatctagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgaaggtttgtaaggggtggtcggaaacttctagaaggatctggaaatctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctctaagattggaaagtgacattgatgcaaccatgttggcctgcattgcattttcctgtcctaaactggattcaatggagatacttatgtgtaattcagtcaatcggatcactggggatgagttgggtcgttttgttgctgagaaaagatgtcttactaatctcaagatggaaggttgctctaatcttgggggttttactctttgctcaaccagtctttcaactctttcactttcagatctctattgtcatgctaagatggtcttcaactgccccaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70385" stop="68036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="69676" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69426" g_stop="69325" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="509" r_length="99" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68436" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="654" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68356" g_stop="68336" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="675" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E452385" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="69676"/>
          <exon e_start="69426" e_stop="69325"/>
          <exon e_start="68580" e_stop="68436"/>
          <exon e_start="68356" e_stop="68336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTG</genome_strand>
        <mrna_strand>CCACCCTCCGTTGTTCGTCCTCAGCCGCCACCTCCCATGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGATGGGGAGTTCTCCGATCTGGATAACGAATCGGATCTAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAAGGTTTGTAAGGGGTGGTCGGAAACTTCTAGAAGGATCTGGAAATCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTAAGATTGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCAACCATGTTGGCCTGCATTGCATTTTCCTGTCCTAAACTGGATTCAATGGAGATACTTATGTGTAAT---TCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGTTGGGTCGTTTTGTTGCTGAGAAAAGATGTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTTACTCTTTGCTCAACCAGTCTTTCAACTCTTTCACTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213271" ref_strand="+" ref_description="SGN-E213271 [cLEC-71-E21]">
      <seq>caaactacagaaaactcccgcgccattctcccaccttttatttttactcatctcttacctcaattttacctacacatttcactgtcgccgccggcaagcttccgattaacaatggcggatcctaaatttatatatataaagctctaaaaaattctgatcggaagaactcactgtacaattttttttggatccgccaattgacggcgaaatcgagatgcagggccgtcaaccccatccccacaccaccactcctatatccgaagttatccttccaaagcgtggcaagaagcggggtagctacagttgtggccgatgcggtgtacccaaaaaaggccatgtttgcaattttcctaagaaccttaatccgattgataatcccagtcccaatcccaattcgtcactcttagcttccccaccctctgttgttcgtcctcagccgccacctcccctgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgagggggatttctccgatctggataacgaatcggatcgagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgagggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70799" stop="69522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70499" g_stop="69822" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E213271" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70499" e_stop="69822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</genome_strand>
        <mrna_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAA-TT-TATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735097" ref_strand="+" ref_description="SGN-E735097 [LB14BG01]">
      <seq>ctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73549" stop="72000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73249" g_stop="73111" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72283" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="605" r_length="466" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E735097" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73249" e_stop="73111"/>
          <exon e_start="72748" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</genome_strand>
        <mrna_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAAAANAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343073" ref_strand="+" ref_description="SGN-E343073 [cTOF-11-D20]">
      <seq>tgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcattgcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcgtttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73490" stop="71987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73190" g_stop="73111" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72283" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="546" r_length="466" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E343073" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73190" e_stop="73111"/>
          <exon e_start="72748" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</genome_strand>
        <mrna_strand>TGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTGCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCGTTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347184" ref_strand="+" ref_description="SGN-E347184 [cTOF-25-I20]">
      <seq>ctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73549" stop="71987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73249" g_stop="73111" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72285" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="603" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E347184" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73249" e_stop="73111"/>
          <exon e_start="72748" e_stop="72285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATT</genome_strand>
        <mrna_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321584" ref_strand="+" ref_description="SGN-E321584 [cTOB-25-C12]">
      <seq>gcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73504" stop="71987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73204" g_stop="73111" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72285" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="558" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E321584" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73204" e_stop="73111"/>
          <exon e_start="72748" e_stop="72285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATT</genome_strand>
        <mrna_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320517" ref_strand="+" ref_description="SGN-E320517 [cTOB-22-K3]">
      <seq>gcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaagatgaagattctgcaatgtccctttaatttcaacttcagattactatgntaaatcatgaattctattctatcatttcctctctttaccttcttccatggctanttgtactatatacatacgaattactattactaattatcatttagtgcatggtaaaaatctttaatgacgntaattgattttgatttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73504" stop="71989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73204" g_stop="73111" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72289" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="554" r_length="460" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E320517" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73204" e_stop="73111"/>
          <exon e_start="72748" e_stop="72289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAA</genome_strand>
        <mrna_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAAGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGNTAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTANTTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGGTAAAAATCTTTAATGACGNTAATTGATTTTGATTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284138" ref_strand="+" ref_description="SGN-E284138 [cLER-13-H2]">
      <seq>cactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctatatacttgttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73493" stop="71996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73193" g_stop="73111" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72296" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="536" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E284138" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73193" e_stop="73111"/>
          <exon e_start="72748" e_stop="72296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTG</genome_strand>
        <mrna_strand>CACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTATATACTTGTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735247" ref_strand="+" ref_description="SGN-E735247 [LB14DC11]">
      <seq>cgtacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73516" stop="72019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73216" g_stop="73111" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72320" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="535" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E735247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73216" e_stop="73111"/>
          <exon e_start="72748" e_stop="72320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</genome_strand>
        <mrna_strand>CGTACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296278" ref_strand="+" ref_description="SGN-E296278 [cLET-24-P6]">
      <seq>gaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgtttannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73515" stop="72029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73215" g_stop="73111" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72320" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="534" r_length="429" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E296278" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73215" e_stop="73111"/>
          <exon e_start="72748" e_stop="72320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</genome_strand>
        <mrna_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTTANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540907" ref_strand="+" ref_description="SGN-E540907 [TUS-61-G21](-)">
      <seq>ttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73502" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73202" g_stop="73111" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72321" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="520" r_length="428" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E540907" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73202" e_stop="73111"/>
          <exon e_start="72748" e_stop="72321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540910" ref_strand="+" ref_description="SGN-E540910 [TUS-61-G21]">
      <seq>ttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73502" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73202" g_stop="73111" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72321" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="520" r_length="428" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E540910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73202" e_stop="73111"/>
          <exon e_start="72748" e_stop="72321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290703" ref_strand="+" ref_description="SGN-E290703 [cLET-10-E14]">
      <seq>tccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcattncctctctttaccttcttccatggctaatggtcctatatacatccgaattactattactaattatcattnggggcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73501" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73201" g_stop="73111" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72321" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="519" r_length="428" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E290703" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73201" e_stop="73111"/>
          <exon e_start="72748" e_stop="72321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTNCCTCTCTTTACCTTCTTCCATGGCTAATGGTCCTATATACATCCGAATTACTATTACTAATTATCATTNGGGGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278710" ref_strand="+" ref_description="SGN-E278710 [cLER-2-E15]">
      <seq>aatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73508" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73208" g_stop="73111" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72322" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="525" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E278710" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73208" e_stop="73111"/>
          <exon e_start="72748" e_stop="72322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTT</genome_strand>
        <mrna_strand>AATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391310" ref_strand="+" ref_description="SGN-E391310 [TUS-47-N17](-)">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgtttttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaaagagtacagaaggaactgggcttccatttgggctcagtaataatttttttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggaggaagattttgcaatgtccctttaatttcaacttcagattagtatgtaaaatcaagaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcaggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73522" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72327" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="571"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E391310" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTTTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAAAGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATTTTTTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGAGGAAGATTTTGCAATGTCCCTTTAATTTCAACTTCAGATTAGTATGTAAAATCAAGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCAGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396346" ref_strand="+" ref_description="SGN-E396346 [TUS-47-N17]">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73522" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72327" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E396346" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTANAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390768" ref_strand="+" ref_description="SGN-E390768 [TUS-47-M17]">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73522" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72327" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="574"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E390768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232617" ref_strand="+" ref_description="SGN-E232617 [cLEL-5-N10](-)">
      <seq>acataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73448" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73148" g_stop="73111" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72327" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="460" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="474"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E232617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73148" e_stop="73111"/>
          <exon e_start="72748" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>ACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232261" ref_strand="+" ref_description="SGN-E232261 [cLEL-5-N10](-)">
      <seq>atgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73027" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72727" g_stop="72327" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="415"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E232261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72727" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>ATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282742" ref_strand="+" ref_description="SGN-E282742 [cLER-15-L8]">
      <seq>aaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73521" stop="72033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73221" g_stop="73111" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72333" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="527" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E282742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73221" e_stop="73111"/>
          <exon e_start="72748" e_stop="72333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATG</genome_strand>
        <mrna_strand>AAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390767" ref_strand="+" ref_description="SGN-E390767 [TUS-47-M17](-)">
      <seq>aaaaaaaaaacaccaatggattccagcatcactgcttgtaccaccacctcttttgccgcccgggaggccctcctacataaggcatcagatctattccgcccctccctttttgggttgccatcaatgaggaagaaagggggaagggggaagtgttcaatggaaagggaggattcaaaatcaggaatttgtggatcatttgtggcaggaacactatcatttagcccaacagcaaaggctttagtggatgaaagaaagagtacagaaggaaatgggcttccatttggggtcagtaataatttttttggttggatcctttttggagtttttggtttggtttggtttctttttactgtttacacttctagccttgatgaggaggaagattttgcaatgtccctttaatttcaacttcagattagtatgtaaaatcaagaattttattttatcatttcctttctttacctttttccctggctaattgtactatatacatacgaattaattttattaattttcatttagtgcagggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73522" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.908" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72336" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="525" r_length="413" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="571"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E390767" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGC</genome_strand>
        <mrna_strand>AAAAAAAAAACACCAATGGATTCCAGCATCACTGCTTGTACCACCACCTCTTTTGCCGCCCGGGAGGCCCTCCTACATAAGGCATCAGATCTATTCCGCCCCTCCCTTTTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAAAGGGGGAAGGGGGAAGTGTTCAATGGAAAGGGAGGATTCAAAATCAGGAATTTGTGGATCATTTGTGGCAGGAACACTATCATTTAGCCCAACAGCAAAGGCTTTAGTGGATGAAAGAAAGAGTACAGAAGGAAATGGGCTTCCATTTGGGGTCAGTAATAATTTTTTTGGTTGGATCCTTTTTGGAGTTTTTGGTTTGGTTTGGTTTCTTTTTACTGTTTACACTTCTAGCCTTGATGAGGAGGAAGATTTTGCAATGTCCCTTTAATTTCAACTTCAGATTAGTATGTAAAATCAAGAATTTTATTTTATCATTTCCTTTCTTTACCTTTTTCCCTGGCTAATTGTACTATATACATACGAATTAATTTTATTAATTTTCATTTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297155" ref_strand="+" ref_description="SGN-E297155 [cLET-29-M3]">
      <seq>agatgttgtgctagtattattgaatataaaaagaagctgtgtcttatttctcattgctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73585" stop="72040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73285" g_stop="73111" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72340" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="584" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E297155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73285" e_stop="73111"/>
          <exon e_start="72748" e_stop="72340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAATATAAAAAGAAGCTGTGTCTTATTTCTCATTGCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293205" ref_strand="+" ref_description="SGN-E293205 [cLET-12-E12]">
      <seq>agatgttgtgctagtattattgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73585" stop="72040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73285" g_stop="73111" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72340" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="584" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E293205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73285" e_stop="73111"/>
          <exon e_start="72748" e_stop="72340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733246" ref_strand="+" ref_description="SGN-E733246 [LB04BE02]">
      <seq>cgataacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73520" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72382" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="479" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E733246" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAAT</genome_strand>
        <mrna_strand>CGATAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294683" ref_strand="+" ref_description="SGN-E294683 [cLET-22-P11]">
      <seq>gaactgggcttccattttggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtccacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtgaaatcatgaattctattctatcatttcctctctttaccttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72895" stop="72096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72595" g_stop="72389" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E294683" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72595" e_stop="72389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCAT</genome_strand>
        <mrna_strand>GAACTGGGCTTCCATTTTGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTCCACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTGAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732995" ref_strand="+" ref_description="SGN-E732995 [LB03CG08]">
      <seq>cggtttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73505" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73206" g_stop="73111" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="454" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="472"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E732995" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73206" e_stop="73111"/>
          <exon e_start="72748" e_stop="72391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>CGGTTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340011" ref_strand="+" ref_description="SGN-E340011 [cTOF-3-E2]">
      <seq>atcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73495" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73195" g_stop="73111" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="443" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="465"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E340011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73195" e_stop="73111"/>
          <exon e_start="72748" e_stop="72391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>ATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235147" ref_strand="+" ref_description="SGN-E235147 [cLEL-6-N22](-)">
      <seq>cttgtaccaccacctcttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73488" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73188" g_stop="73111" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="435" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="453"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E235147" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73188" e_stop="73111"/>
          <exon e_start="72748" e_stop="72391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>CTTGTACCACCACCTC-TTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234667" ref_strand="+" ref_description="SGN-E234667 [cLEL-6-N22](-)">
      <seq>gtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73461" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73161" g_stop="73111" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="409" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="427"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E234667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73161" e_stop="73111"/>
          <exon e_start="72748" e_stop="72391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>GTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225976" ref_strand="+" ref_description="SGN-E225976 [cLEL-31-M20](-)">
      <seq>ggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73457" stop="72090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73157" g_stop="73111" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="405" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E225976" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73157" e_stop="73111"/>
          <exon e_start="72748" e_stop="72391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>GGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733603" ref_strand="+" ref_description="SGN-E733603 [LB10BH01]">
      <seq>cgatacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73516" stop="72100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73216" g_stop="73111" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72393" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="463" r_length="356" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E733603" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73216" e_stop="73111"/>
          <exon e_start="72748" e_stop="72393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGA-ACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTT</genome_strand>
        <mrna_strand>CGATACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344011" ref_strand="+" ref_description="SGN-E344011 [cTOF-12-O24]">
      <seq>ttgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73566" stop="72100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73266" g_stop="73111" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72400" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="505" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E344011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73266" e_stop="73111"/>
          <exon e_start="72748" e_stop="72400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>TTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734079" ref_strand="+" ref_description="SGN-E734079 [LB11CH08]">
      <seq>gaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73515" stop="72100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73215" g_stop="73111" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72400" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="454" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="466"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E734079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73215" e_stop="73111"/>
          <exon e_start="72748" e_stop="72400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295658" ref_strand="+" ref_description="SGN-E295658 [cLET-25-O14]">
      <seq>accaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctatggtcaggtttggtctctttatactggttacactattaaccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtcaaaacatgaattctattctatcatttcctctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73511" stop="72100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73211" g_stop="73111" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72400" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="450" r_length="349" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E295658" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73211" e_stop="73111"/>
          <exon e_start="72748" e_stop="72400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>ACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTATGGTCAGGTTTGGTCTCTTTATACTGGTTACACTATTAACCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTCAAAACATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734686" ref_strand="+" ref_description="SGN-E734686 [LB13BC10]">
      <seq>cctcgtgccgaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctcnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73518" stop="72104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73229" g_stop="73111" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72404" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="463" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="478"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E734686" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73229" e_stop="73111"/>
          <exon e_start="72748" e_stop="72404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTC</genome_strand>
        <mrna_strand>CCTCGTG-CCGAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732474" ref_strand="+" ref_description="SGN-E732474 [LB02BB02]">
      <seq>gaataccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73515" stop="72105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73215" g_stop="73111" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72405" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="449" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="476"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E732474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73215" e_stop="73111"/>
          <exon e_start="72748" e_stop="72405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>GAATACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733494" ref_strand="+" ref_description="SGN-E733494 [LB10AF10]">
      <seq>atggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73507" stop="72105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73207" g_stop="73111" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72405" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="441" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="461"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E733494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73207" e_stop="73111"/>
          <exon e_start="72748" e_stop="72405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>ATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713196" ref_strand="+" ref_description="SGN-E713196 [FB06DH12]">
      <seq>tggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73506" stop="72105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73206" g_stop="73111" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72405" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="440" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="457"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E713196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73206" e_stop="73111"/>
          <exon e_start="72748" e_stop="72405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234525" ref_strand="+" ref_description="SGN-E234525 [cLEL-6-G2](-)">
      <seq>ctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaataaggaagaatgtgggaagggttaagtgttcaatggaaaaagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcacattactatgtaaaatcatgaattctattaaatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73453" stop="72113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73153" g_stop="73111" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72414" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="378" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E234525" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73153" e_stop="73111"/>
          <exon e_start="72748" e_stop="72414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>CTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATAAGGAAGAATGTGGGAAGGGTTAAGTGTTCAATGGAAAAAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCACATTACTATGTAAAATCATGAATTCTATTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229360" ref_strand="+" ref_description="SGN-E229360 [cLEL-4-H1](-)">
      <seq>ccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73049" stop="72113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72748" g_stop="72414" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="352" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="368"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E229360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72748" e_stop="72414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217366" ref_strand="+" ref_description="SGN-E217366 [cLEL-21-B23](-)">
      <seq>aatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattaagtggcagcaacaatatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73028" stop="72113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72728" g_stop="72414" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="332"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E217366" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72728" e_stop="72414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATT-AGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>AATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAAGTGGCAGCAACAATATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235197" ref_strand="+" ref_description="SGN-E235197 [cLEL-6-G2](-)">
      <seq>gtgggaagggttaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcgacactatcattcagccccacagcaatggctttagtggatgaaagaatcagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73025" stop="72113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72725" g_stop="72414" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="328"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E235197" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72725" e_stop="72414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>GTGGGAAGGGTTAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCGACACTATCATTCAGCCCCACAGCAATGGCTTTAGTGGATGAAAGAATCAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289865" ref_strand="+" ref_description="SGN-E289865 [cLET-9-L6]">
      <seq>agatgttgtgctagtattattgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73585" stop="72116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73285" g_stop="73111" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72416" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="508" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E289865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73285" e_stop="73111"/>
          <exon e_start="72748" e_stop="72416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733614" ref_strand="+" ref_description="SGN-E733614 [LB10BH12]">
      <seq>tgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73565" stop="72116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73265" g_stop="73111" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72417" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="487" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="507"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E733614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73265" e_stop="73111"/>
          <exon e_start="72748" e_stop="72417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</genome_strand>
        <mrna_strand>TGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220640" ref_strand="+" ref_description="SGN-E220640 [cLEL-12-M5](-)">
      <seq>cgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73466" stop="72116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73166" g_stop="73111" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72417" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="388" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="407"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E220640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73166" e_stop="73111"/>
          <exon e_start="72748" e_stop="72417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</genome_strand>
        <mrna_strand>CGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284608" ref_strand="+" ref_description="SGN-E284608 [cLES-3-K12]">
      <seq>cccgtgaggcccttctacataaggtatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattgatcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagcaataatcttcttggctggatcctttttggagtctttggtttggtttgggctctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73464" stop="72213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73164" g_stop="73111" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72513" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="290" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E284608" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73164" e_stop="73111"/>
          <exon e_start="72748" e_stop="72513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTAT</genome_strand>
        <mrna_strand>CCCGTGAGGCCCTTCTACATAAGGTATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTGATCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGCAATAATCTTCTTGGCTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGGCTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293827" ref_strand="+" ref_description="SGN-E293827 [cLET-37-O8]">
      <seq>aagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73031" stop="72272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72731" g_stop="72572" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E293827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72731" e_stop="72572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCA</genome_strand>
        <mrna_strand>AAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268904" ref_strand="+" ref_description="SGN-E268904 [cLEM-4-L23]">
      <seq>ttgatacatacaactttgtatcccaagtttcactgtacccacaaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97001" stop="99185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97301" g_stop="97567" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98714" g_stop="98885" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="535" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E268904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97301" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98714" e_stop="98885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</genome_strand>
        <mrna_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709387" ref_strand="+" ref_description="SGN-E709387 [FA51DA06]">
      <seq>aaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97043" stop="101454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97343" g_stop="97567" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="321" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98714" g_stop="98932" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="100029" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="637" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100961" g_stop="101023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="700" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101122" g_stop="101154" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="733" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E709387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97343" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98714" e_stop="98932"/>
          <exon e_start="99933" e_stop="100029"/>
          <exon e_start="100961" e_stop="101023"/>
          <exon e_start="101122" e_stop="101154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</genome_strand>
        <mrna_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423476" ref_strand="+" ref_description="SGN-E423476 [STM-42-G19]">
      <seq>gaattgaaagaatatgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatggtaatctgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96986" stop="100325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97347" g_stop="97567" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="289" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="385" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98720" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98721" g_stop="98932" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="597" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="100025" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="690" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E423476" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97347" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98721" e_stop="98932"/>
          <exon e_start="99933" e_stop="100025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----AA--GAA--AA-GGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTG</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACAC--T-T---T--A-T--G-GCAGCTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGGTAATCTGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450532" ref_strand="+" ref_description="SGN-E450532 [cSTS-9-J19]">
      <seq>tgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97045" stop="100289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97347" g_stop="97567" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="275" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98720" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98721" g_stop="98932" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="583" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="99989" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="640" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E450532" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97347" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98721" e_stop="98932"/>
          <exon e_start="99933" e_stop="99989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----A-----AGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACACTTTAT-G--G--C----AG---CTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318281" ref_strand="+" ref_description="SGN-E318281 [cTOA-29-H3]">
      <seq>cactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgctcgatccgttgcagcaggctgttgcagatggttgtcattttaccaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97181" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97481" g_stop="97567" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="183" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98714" g_stop="98932" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="402" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="100029" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="499" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100961" g_stop="101023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="562" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101122" g_stop="101204" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E318281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97481" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98714" e_stop="98932"/>
          <exon e_start="99933" e_stop="100029"/>
          <exon e_start="100961" e_stop="101023"/>
          <exon e_start="101122" e_stop="101204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</genome_strand>
        <mrna_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423477" ref_strand="-" ref_description="SGN-E423477 [STM-42-G19]">
      <seq>aagcagcagcagagactgcaggctttccagctgcgaatttcaaattcntgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatgttaatctgacactgcaggaggtcagaagggtgctcaggcctggtggcatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgcttgatccgttgcagcaggctgtcgcagatggttgtcattttaccaggaaaacaggaaagaacatatctgaagccggtttcacaaatgtagatagtcgtcaagtcgtattatcaactgcctctctgataaatcctcatatcattggcatagctcgcaactagatatatccaagtgtttacaatggtgtctttgtgaatctttagctcatgatcttgaacttctccacaacatatttcaaccggctagttatattgcccccgaacaacaagggcacaacagttacagtagaattatgcatcatcattttacaagtaaagagatgagtttttattcttattttgtataataacattggcttgattaaaaagagtgacatgatcagtgaagattcatatagccaactcctaacttgttcgatattgaggcgtagtagttgttgtaattgttgtatttttcctgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98577" stop="101926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98877" g_stop="98932" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99933" g_stop="100029" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100961" g_stop="101023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="216" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.132" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101122" g_stop="101627" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="717" r_length="501" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E423477" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98877" e_stop="98932"/>
          <exon e_start="99933" e_stop="100029"/>
          <exon e_start="100961" e_stop="101023"/>
          <exon e_start="101122" e_stop="101627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCA-TTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCC-AACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</genome_strand>
        <mrna_strand>AAGCAGCAGCAGAGACTGCAGGCTTTCCAGCTGCGAATTTCAAATTCNTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAGGCCTGGTGGCATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTTGATCCGTTGCAGCAGGCTGTCGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAACATATCTGAAGCCGGTTTCACAAATGTAGATAGTCGTCAAGTCGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAG------ATATATCCAAGTGTTTACAATGGTGTCTTTGTGAATCTTTAGCTCATGATCTTGAA-CTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCCCCGAACAACAAGGGCACAACAGTTACAGTAGAATTATGCATCATCATTTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATGATCAGTGAAGATTCATATAGCCAACTCCTAACTTGTTCGATATTGAGGCGTAGTAGTTGTTGTAATTGTTGTATTTTTCCTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718798" ref_strand="+" ref_description="SGN-E718798 [FC05DD06]">
      <seq>gatacgagcaaaatagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102971" stop="104479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103270" g_stop="103525" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104179" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="832" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E718798" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103270" e_stop="103525"/>
          <exon e_start="103604" e_stop="104179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCT</genome_strand>
        <mrna_strand>GATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338536" ref_strand="+" ref_description="SGN-E338536 [cTOE-15-A13]">
      <seq>gagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103283" g_stop="103525" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103736" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="376" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E338536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103283" e_stop="103525"/>
          <exon e_start="103604" e_stop="103736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</genome_strand>
        <mrna_strand>GAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707168" ref_strand="+" ref_description="SGN-E707168 [FA32BA04]">
      <seq>cgatattcgagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104296" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="935" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E707168" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="104296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</genome_strand>
        <mrna_strand>CGATATTCGAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699780" ref_strand="+" ref_description="SGN-E699780 [FA11AG07]">
      <seq>agaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgagggaaagctgcaccgaagccagctgtgaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104156" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="796" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E699780" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="104156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGA-GGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGG</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728960" ref_strand="+" ref_description="SGN-E728960 [LA19CB02]">
      <seq>agaaattctagtagttctacagaacttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgctaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctatagcccctgtaaaagctaaggctgctgttaagccaaaagcggctaatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104079" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="718" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E728960" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="104079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAA</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGAACTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCTAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTATAGCCCCTGTAAAAGCTAAGGCTGCTGTTAAGCCAAAAGCGGCTAATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568586" ref_strand="+" ref_description="SGN-E568586 [12891]">
      <seq>agaaattccagtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactggtaccaaatcaaaagctaagccaaanactgttgttgctgctaaagctaaancaggtgcaaagtctaaggcagttgtagtaaanacgaaagcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104018" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="657" r_length="415" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E568586" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="104018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTG</genome_strand>
        <mrna_strand>AGAAATTCCAGTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGGTACCAAATCAAAAGCTAAGCCAAANACTGTTGTTGCTGCTAAAGCTAAANCAGGTGCAAAGTCTAAGGCAGTTGTAGTAAANACGAAAGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315012" ref_strand="+" ref_description="SGN-E315012 [cTOB-4-C24]">
      <seq>agaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103828" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="467" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E315012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="103828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAG</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303965" ref_strand="+" ref_description="SGN-E303965 [cLEX-4-H6]">
      <seq>agaaattctagtagttctacagattttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatacttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103284" g_stop="103525" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103791" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="430" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E303965" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103284" e_stop="103525"/>
          <exon e_start="103604" e_stop="103791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATTTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATACTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731444" ref_strand="+" ref_description="SGN-E731444 [LA27AF02]">
      <seq>gaaattctagtacttttaagatcttagaaaccctaattattatattctgtaaacatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104180" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="817" r_length="577" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E731444" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="104180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</genome_strand>
        <mrna_strand>GAAATTCTAGTACTTTTA-AGATCTTAGAAACCCTAATTATTATATTCTGTAAACATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704276" ref_strand="+" ref_description="SGN-E704276 [FA23DD04]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104180" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="818" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E704276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="104180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730206" ref_strand="+" ref_description="SGN-E730206 [LA23BF04]">
      <seq>gaccttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgaggtaaaattggttatagatttgttattagtcgaagttgttgtttaatttgccgatcagctaacttgaaatgctatgcagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcacctgtaaagcctaaaccccctgtaaaaagctaaggctgctgtaaagcccaaaagcggctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="104076" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E730206" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="104076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGT-AAAAGCTAAGGCTGCTGTAAAG-CCAAAAGCGGCTAATGA</genome_strand>
        <mrna_strand>GACCTTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCACCTGTAAAGCCTAAACCCCCTGTAAAAAGCTAAGGCTGCTGTAAAGCCCAAAAGCGGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342665" ref_strand="+" ref_description="SGN-E342665 [cTOF-7-N21]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagccctgttgttgctgccaaagctaaaccagctgcaaagcctaanggcagntgtagcaaagccgaaagcagctgtaaagcctnaagcccctgtaaaagctaaggctgctgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104059" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="698" r_length="457" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E342665" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="104059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAG-CCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAA-GGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCC-AAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAANGGCAGNTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTNAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345410" ref_strand="+" ref_description="SGN-E345410 [cTOF-13-B23]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104040" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="678" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E345410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="104040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAA</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338454" ref_strand="+" ref_description="SGN-E338454 [cTOE-15-M14]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103853" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="491" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E338454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="103853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCAC</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273554" ref_strand="+" ref_description="SGN-E273554 [cLEN-6-J21]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103791" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="429" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E273554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="103791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298164" ref_strand="+" ref_description="SGN-E298164 [cLEW-9-K20]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttgctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="104065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103525" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103765" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="403" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E298164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103525"/>
          <exon e_start="103604" e_stop="103765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTGCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322892" ref_strand="+" ref_description="SGN-E322892 [cTOB-30-A13]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgtacccaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="103751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="103451" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E322892" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="103451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGTACCCAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746601" ref_strand="+" ref_description="SGN-E746601 [GI|47104149]">
      <seq>cctcgtgccgagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="252" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104391" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="1040" r_length="788" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1041" polyA_stop="1054"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E746601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="104391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328153" ref_strand="+" ref_description="SGN-E328153 [cTOC-21-E15]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102986" stop="104375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104075" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="712" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E328153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="104075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATG</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260128" ref_strand="+" ref_description="SGN-E260128 [cLEG-52-M21]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaggccaaaactgctaccaaatcaaaagctaagccaagcctgttgttgctgccaaagctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102986" stop="104273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103973" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="608" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E260128" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="103973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAAC</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCC-AAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCC-AAGCCTGTTGTTGCTGCCAAAGCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578583" ref_strand="+" ref_description="SGN-E578583 [85702]">
      <seq>taaatccagtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctgggtaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102986" stop="104146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103846" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="483" r_length="243" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E578583" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="103846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAA</genome_strand>
        <mrna_strand>TAAATCCAGTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGGTAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270721" ref_strand="+" ref_description="SGN-E270721 [cLEM-6-J19]">
      <seq>ctcgtgccgagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaagaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102984" stop="104092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="251" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103792" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="440" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E270721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="103792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCT</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAAGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289701" ref_strand="+" ref_description="SGN-E289701 [cLET-4-M5]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102986" stop="103964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103286" g_stop="103525" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103664" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="301" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E289701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103286" e_stop="103525"/>
          <exon e_start="103604" e_stop="103664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325288" ref_strand="+" ref_description="SGN-E325288 [cTOC-1-F7]">
      <seq>aattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102987" stop="104259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103287" g_stop="103525" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103959" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="595" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E325288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103287" e_stop="103525"/>
          <exon e_start="103604" e_stop="103959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGC</genome_strand>
        <mrna_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727084" ref_strand="+" ref_description="SGN-E727084 [LA13CG05]">
      <seq>aattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataannanaaaaatcttccatcaaatttcaagaaaatgttgcttgctcaattgaataagcttgtggcttctggaaaacttgtcaaggtgaagagctcctactagcttccggctccaaaggcagctgctcctgctcttgctaagaataagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggctgatccgaatccaaaaccttaggttgctgctccaaaggccaaaactgctaccaaatcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102987" stop="104238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103287" g_stop="103525" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103938" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="574" r_length="335" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E727084" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103287" e_stop="103525"/>
          <exon e_start="103604" e_stop="103938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGC</genome_strand>
        <mrna_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAANNANAAAAATCTTCCATCAAATTTCAAGAAAATGTTGCTTGCTCAATTGAATAAGCTTGTGGCTTCTGGAAAACTTGTCAAGGTGAAGAGCTCCTACTAGCTTCCGGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAATAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCTGATCCGAATCCAAAACCTTAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709336" ref_strand="+" ref_description="SGN-E709336 [FA51BH12]">
      <seq>cgtctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaacagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102990" stop="104490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103288" g_stop="103525" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104190" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="825" r_length="587" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E709336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103288" e_stop="103525"/>
          <exon e_start="103604" e_stop="104190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAA</genome_strand>
        <mrna_strand>CGTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAACAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318326" ref_strand="+" ref_description="SGN-E318326 [cTOA-29-G9]">
      <seq>attctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatctaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgcaacattgaaggataaaactggatcgagtcagtatgcgatcactaagttcattgaagataagcagaaaaatcttccatcagatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaataagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaagaccaaaggttgctgctccaaaggccaaaactgctaccagatcaaaagctaagccagagcctgttggtgctgccacagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtatagcctaaagcccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102988" stop="104337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103288" g_stop="103525" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104037" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="672" r_length="434" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E318326" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103288" e_stop="103525"/>
          <exon e_start="103604" e_stop="104037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGT</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCTAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGCAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACTAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAGATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAATAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAGACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAGATCAAAAGCTAAGCCAGAGCCTGTTGGTGCTGCCACAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTATAGCCTAAAGCCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342152" ref_strand="+" ref_description="SGN-E342152 [cTOF-10-B19]">
      <seq>attctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttactactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctgcaaaggcagctgctcctgctcttgctaagaaaaagtccatagctnaggccataagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcatagccgaaagcagctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102988" stop="104324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103288" g_stop="103525" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104024" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="660" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E342152" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103288" e_stop="103525"/>
          <exon e_start="103604" e_stop="104024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAA-GCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTACTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTGCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTNAGGCCATAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCATAGCCGAAAGCAGCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367023" ref_strand="+" ref_description="SGN-E367023 [cLPT-6-P23]">
      <seq>attctagtagttctacagatcttagaaaccctaatttgtattttctgtaaagatggcgactgaagagccagttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaaaagaaatcctccgactcatccttcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102988" stop="103822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103288" g_stop="103522" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E367023" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103288" e_stop="103522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTT</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTTGTATTTTCTGTAAAGATGGCGACTGAAGAGCCAGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAAAGAAATCCTCCGACTCATCCTTCCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320901" ref_strand="+" ref_description="SGN-E320901 [cTOB-13-C17]">
      <seq>ttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102989" stop="104161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103289" g_stop="103525" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103861" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="495" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E320901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103289" e_stop="103525"/>
          <exon e_start="103604" e_stop="103861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</genome_strand>
        <mrna_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318115" ref_strand="+" ref_description="SGN-E318115 [cTOA-29-N7]">
      <seq>ttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102989" stop="104150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103289" g_stop="103525" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103850" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="484" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E318115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103289" e_stop="103525"/>
          <exon e_start="103604" e_stop="103850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAG</genome_strand>
        <mrna_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323312" ref_strand="+" ref_description="SGN-E323312 [cTOB-28-N4]">
      <seq>tctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagcccagctaggtagcaaggacatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102990" stop="104406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103290" g_stop="103525" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104106" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="739" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E323312" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103290" e_stop="103525"/>
          <exon e_start="103604" e_stop="104106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAG-CCAGCTAAGGTAGCAAGGACATCTAC</genome_strand>
        <mrna_strand>TCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCCAGCT-AGGTAGCAAGGACATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316787" ref_strand="+" ref_description="SGN-E316787 [cTOB-6-M7]">
      <seq>ctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102991" stop="104194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103291" g_stop="103525" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103894" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="526" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E316787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103291" e_stop="103525"/>
          <exon e_start="103604" e_stop="103894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCA</genome_strand>
        <mrna_strand>CTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318351" ref_strand="+" ref_description="SGN-E318351 [cTOA-29-K14]">
      <seq>tagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102992" stop="104343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103292" g_stop="103525" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104043" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="674" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E318351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103292" e_stop="103525"/>
          <exon e_start="103604" e_stop="104043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467744" ref_strand="+" ref_description="SGN-E467744 [cSTB-1-J13]">
      <seq>cagtagttctacagatcttagaaatcctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaattgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccactggcggatactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgttaaggttaagagttcctacaagcttccagctccaaaggcagctgctactgcgcccgctaagaagaagccggtagctaagccaaaagcaacacaggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102993" stop="104161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103292" g_stop="103525" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103861" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="492" r_length="258" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E467744" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103292" e_stop="103525"/>
          <exon e_start="103604" e_stop="103861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</genome_strand>
        <mrna_strand>CAGTAGTTCTACAGATCTTAGAAATCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATTGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACTGGCGGATACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTTAAGGTTAAGAGTTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCCGCTAAGAAGAAGCCGGTAGCTAAGCCAAAAGCAACACAGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411089" ref_strand="+" ref_description="SGN-E411089 [STM-14-I5]">
      <seq>cagtagttctacagatcttagaaatcctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaattgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccactggcggatactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102993" stop="103792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103292" g_stop="103492" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E411089" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103292" e_stop="103492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAG</genome_strand>
        <mrna_strand>CAGTAGTTCTACAGATCTTAGAAATCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATTGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACTGGCGGATACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592017" ref_strand="+" ref_description="SGN-E592017 [45742]">
      <seq>gtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagtaaaaccgaaagcagctgttaagcccaaagcccctgtgaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102994" stop="104430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103294" g_stop="103525" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104130" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="759" r_length="527" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E592017" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103294" e_stop="103525"/>
          <exon e_start="103604" e_stop="104130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGC</genome_strand>
        <mrna_strand>GTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGTAAAACCGAAAGCAGCTGTTAAGCCCAAAGCCCCTGTGAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341411" ref_strand="+" ref_description="SGN-E341411 [cTOE-23-N1]">
      <seq>gtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102994" stop="104186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103294" g_stop="103525" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103886" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="515" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E341411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103294" e_stop="103525"/>
          <exon e_start="103604" e_stop="103886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGC</genome_strand>
        <mrna_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338054" ref_strand="+" ref_description="SGN-E338054 [cTOE-14-H24]">
      <seq>gtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102994" stop="104014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103294" g_stop="103525" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103714" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="343" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E338054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103294" e_stop="103525"/>
          <exon e_start="103604" e_stop="103714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</genome_strand>
        <mrna_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699631" ref_strand="+" ref_description="SGN-E699631 [FA10DA07]">
      <seq>agttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtaccaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102996" stop="104344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103296" g_stop="103525" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104044" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="671" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E699631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103296" e_stop="103525"/>
          <exon e_start="103604" e_stop="104044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCT</genome_strand>
        <mrna_strand>AGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTACCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701816" ref_strand="+" ref_description="SGN-E701816 [FA17AB02]">
      <seq>gttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102997" stop="104492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103297" g_stop="103525" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104192" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="818" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E701816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103297" e_stop="103525"/>
          <exon e_start="103604" e_stop="104192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGT</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706489" ref_strand="+" ref_description="SGN-E706489 [FA30AD10]">
      <seq>gttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaagtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102997" stop="104477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103297" g_stop="103525" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104177" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="803" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E706489" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103297" e_stop="103525"/>
          <exon e_start="103604" e_stop="104177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAAT</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAAGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599935" ref_strand="+" ref_description="SGN-E599935 [52935]">
      <seq>gttctacagatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgctactgcgcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgttgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagactaaagcccctgttgaaagctaaggctgctgttaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagctgcaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102997" stop="104438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103297" g_stop="103525" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104138" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="766" r_length="537" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E599935" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103297" e_stop="103525"/>
          <exon e_start="103604" e_stop="104138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTG-TAAAAGCTAAGGCTGCTG-TAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGA</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGTTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGACTAAAGCCCCTGTTGAAAGCTAAGGCTGCTGTTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGCTGCACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326247" ref_strand="+" ref_description="SGN-E326247 [cTOC-16-N6]">
      <seq>ttctacagatcttagaaaccctaattattatatttctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcttctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102998" stop="104407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103298" g_stop="103525" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104107" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="733" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E326247" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103298" e_stop="103525"/>
          <exon e_start="103604" e_stop="104107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATT-CTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCTTCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326865" ref_strand="+" ref_description="SGN-E326865 [cTOC-25-E16]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102998" stop="104406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103298" g_stop="103525" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104106" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="731" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E326865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103298" e_stop="103525"/>
          <exon e_start="103604" e_stop="104106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTAC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347792" ref_strand="+" ref_description="SGN-E347792 [cTOF-26-L15]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagccccctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102998" stop="104343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103298" g_stop="103525" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104043" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="668" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E347792" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103298" e_stop="103525"/>
          <exon e_start="103604" e_stop="104043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327690" ref_strand="+" ref_description="SGN-E327690 [cTOC-20-E19]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102998" stop="104324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103298" g_stop="103525" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104024" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="649" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E327690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103298" e_stop="103525"/>
          <exon e_start="103604" e_stop="104024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310328" ref_strand="+" ref_description="SGN-E310328 [cTOA-1-K3]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaattctccgactcatccttcctactttgagatgattaaggaagcgattgttacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102998" stop="104023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103298" g_stop="103525" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103723" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="348" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E310328" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103298" e_stop="103525"/>
          <exon e_start="103604" e_stop="103723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATTCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTTACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209115" ref_strand="+" ref_description="SGN-E209115 [cLEC-38-M5]">
      <seq>tctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagatgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102999" stop="104183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103299" g_stop="103525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103883" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E209115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103299" e_stop="103525"/>
          <exon e_start="103604" e_stop="103883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGA</genome_strand>
        <mrna_strand>TCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGATGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709125" ref_strand="+" ref_description="SGN-E709125 [FA42DA10]">
      <seq>cgcttatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaaatgatcgaatgtaagaggaagggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103006" stop="104554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103301" g_stop="103525" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104255" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="877" r_length="652" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E709125" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103301" e_stop="103525"/>
          <exon e_start="103604" e_stop="104255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAG</genome_strand>
        <mrna_strand>CGCTTATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAATGATCGAATGTAAGAGGAAGGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573008" ref_strand="+" ref_description="SGN-E573008 [32251]">
      <seq>accgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103002" stop="104260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103302" g_stop="103525" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103960" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="581" r_length="357" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E573008" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103302" e_stop="103525"/>
          <exon e_start="103604" e_stop="103960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCT</genome_strand>
        <mrna_strand>ACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707567" ref_strand="+" ref_description="SGN-E707567 [FA33BE06]">
      <seq>catttcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtngaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103003" stop="104563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103303" g_stop="103525" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104263" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="883" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E707567" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103303" e_stop="103525"/>
          <exon e_start="103604" e_stop="104263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAA</genome_strand>
        <mrna_strand>CATTTCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTNGAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321596" ref_strand="+" ref_description="SGN-E321596 [cTOB-25-I12]">
      <seq>cagatctcagaaaccctaattattatatgctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcaggatgcgatcacaaagctcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagctgccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgcgccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103003" stop="104275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103303" g_stop="103525" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103975" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="595" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E321596" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103303" e_stop="103525"/>
          <exon e_start="103604" e_stop="103975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCA</genome_strand>
        <mrna_strand>CAGATCTCAGAAACCCTAATTATTATATGCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGGATGCGATCACAAAGCTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTGCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCGCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345158" ref_strand="+" ref_description="SGN-E345158 [cTOF-22-J22]">
      <seq>agatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaagcctaagggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103004" stop="104452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103304" g_stop="103525" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103914" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="533" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103915" i_stop="103979" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103980" g_stop="104152" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="707" r_length="174" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E345158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103304" e_stop="103525"/>
          <exon e_start="103604" e_stop="103914"/>
          <exon e_start="103980" e_stop="104152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAA-GGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</genome_strand>
        <mrna_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC.................................................................CAAAGCCTAAGGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745002" ref_strand="+" ref_description="SGN-E745002 [GI|3021486]">
      <seq>cggcacgaggatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103002" stop="106453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103306" g_stop="103525" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="230" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104392" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="1019" r_length="789" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104393" i_stop="106137" i_length="1745">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106138" g_stop="106154" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1020" r_stop="1036" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E745002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1026</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103306" e_stop="103525"/>
          <exon e_start="103604" e_stop="104392"/>
          <exon e_start="106138" e_stop="106154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAGTATAGTCGGTCAAATACTGAAATGCATCATCGTTAATTTTCCTTTTATGATGCACATAATTGGTTTTAACTTTTACATTATAACAAAAATCTAATTTCTCGGCGCATTGAAACGCAGTATAAATGTGTATTATATTCAAAAGATAACGTAATAAATTGAGCTAAATTAAATTGAAGAGGCTAAACTGAAAATTCAAAACCTAAATTGGACGAGACATTATACATCAGTAAGGTGTCCTTAAAAAAAATTATAATTGTGTATTTCAATCCATCTCAACCTATTAATAATTGTGTTGATTTGCAACTCAAATTAACTCATCAGAAGTTTTATAAATTGTTTTTTTTTTCTAGTTTGATATATTATTTATAGCCAATAGTAAAGAAAAAATATTTTTTTATTGGTACAAAAAAACTTCTAAACGAACAATTAAACTTAGTAAATGAGCTGATTTGGATCTTGATTCATTTTGTAACCCATTTTTTAACCCGACCCCTTTTAACCCAAGTAAAATTGAATTGAGTTGGATTTTAACTTATTATTGTCTTGACCCATTATAATTTGTTCAAATTTGACACAATTCGTTTAATTGTCACCTCTACATAAATTACACAATTCAACATAATTATATTAATAATTTCACAAAAAAGTAATAGTGCAAAATATTATTCTAATAATGTTCTCTTATTAAGTGTGCATTATTTTCACAAATTTACTTAATGCGGATTAAAAAATATAATACACTTAGTACAGATATAATTTATAACCTCATTGAAATCAATAAAACATTCACATGACAAAATCTAGTTAAAAATTAAGCTTGAATTTCAAGTGAACATTGCCCTATTAAATATGAATGAATCTACTTATTATTTTATATATGTATTTCCTCATAACTTAAACACTTACTAATATGAAGTTCGGAGCCTAAAGGTTACAAAATATTAACAAAAATTTTAAAATGGTATATAAAATTTTATATTAATCAAAACGGCAAAGTCGCTGCATCAACAGCGATTTACTCCACCGGAAAAAGCAAAATCGCTGCAGAGGCAGTGATTTTACAAAATGTGAATTTTTTTTTTAAAAAAATGAAATCGCTACCTAGGCAGCAATTTAAATTTTTTTTTAAAAAAATAAGGAAAATCGCTGCCTAGGCAGCGATTTTTTTTAAAAAAAAGTTGAAATGTGGAAGTCGCTGCCCAGGCAGCGACTTTTATAATTTTTATTTTTTGTTTTAATTTTTAAGATTTTTTTTTTTAAAAAAATTATAAAATTTATAAATCGCTGCCTAGGCAGTGGTTTTTTTTAAAAAAAAAACTTATAAATTTTTTTAAATCGCTACCTACACAGCGATTTATAAATTTATTTTTTTTAAAATATGTAAATCGCTTACCGAATTTATAATTTTTTTTTAAAATATGGAAATCACTGCAATTTTCCAAAAATAATTTTTTTTAAAAATAAAATTTAAAGCAACGATTTTGTAAAAAAATATTATTAAATTTTTTTATTTTATAAAATTTCTGCTTTAAATTTTTATTTTTTTTTAAAAAAAATCCATATTGTCTCCATATTTTTTAAGAAAAAAATTTAAAAATTAAAAAAAAATTATAAAAGTCGGTGCCTGGGCAGCGACTTGCACATTTCAAAAACGAATTTTGTATAAAAGTCGCTGCCTTGGCAGCGACTTCCACATTTCAAAAAAAAAAAAAAAAT</genome_strand>
        <mrna_strand>ATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708082" ref_strand="+" ref_description="SGN-E708082 [FA34DC03]">
      <seq>cttttaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaattttctggatctttgtgggtggtttgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103008" stop="104596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103308" g_stop="103525" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104296" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="911" r_length="693" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E708082" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103308" e_stop="103525"/>
          <exon e_start="103604" e_stop="104296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</genome_strand>
        <mrna_strand>CTTTTAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTTCTGGATCTTTGTGGGTGGTTTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573782" ref_strand="+" ref_description="SGN-E573782 [33146]">
      <seq>tagaaaccctaatttgaagtttctgcaaagatggcgatctgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagtaaaaccgaaagcagctgttaagcccaaagcccctgtgaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagctgcacccgaagccagctgctaaaaaaggcgcccggtgaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103030" stop="104468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103310" g_stop="103525" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104170" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="787" r_length="570" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E573782" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103310" e_stop="103525"/>
          <exon e_start="103604" e_stop="104170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACCCTAATTATTATATTCTGTAAAGATGGCGA-CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCA-CCGAAGCCAGCTG-TGAAAAAGGC-ACCGGTGAAGAGT</genome_strand>
        <mrna_strand>TAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGATCTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGTAAAACCGAAAGCAGCTGTTAAGCCCAAAGCCCCTGTGAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGCTGCACCCGAAGCCAGCTGCTAAAAAAGGCGCCCGGTGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726781" ref_strand="+" ref_description="SGN-E726781 [LA12DB12]">
      <seq>gaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtngaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaggcaaagaagtgatcgaatgtangaggaagggtagcattngtaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103012" stop="104628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103312" g_stop="103525" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104328" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="938" r_length="724" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E726781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103312" e_stop="103525"/>
          <exon e_start="103604" e_stop="104328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTC</genome_strand>
        <mrna_strand>GAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTNGAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGG-AGGCAAAGAAGTGATCGAATGTANGAGGAAGGGTAGCATTNGTAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333747" ref_strand="+" ref_description="SGN-E333747 [cTOD-22-K14]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103013" stop="104407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103313" g_stop="103525" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104107" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="717" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E333747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103313" e_stop="103525"/>
          <exon e_start="103604" e_stop="104107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333326" ref_strand="+" ref_description="SGN-E333326 [cTOD-20-B20]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103013" stop="104386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103313" g_stop="103525" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104086" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="696" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E333326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103313" e_stop="103525"/>
          <exon e_start="103604" e_stop="104086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCT</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334539" ref_strand="+" ref_description="SGN-E334539 [cTOD-23-H6]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103013" stop="104343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103313" g_stop="103525" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104043" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="653" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E334539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103313" e_stop="103525"/>
          <exon e_start="103604" e_stop="104043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569540" ref_strand="+" ref_description="SGN-E569540 [13992]">
      <seq>cctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaagcaaccaaggcaaagccgaagccaaaaacaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103030" stop="104200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103317" g_stop="103525" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103900" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="505" r_length="296" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E569540" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103317" e_stop="103525"/>
          <exon e_start="103604" e_stop="103900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTT</genome_strand>
        <mrna_strand>CCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAA-GCAACCAAGGCAAAGCCGAAGCCAAAAACAAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702129" ref_strand="+" ref_description="SGN-E702129 [FA17DE08]">
      <seq>gtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagcctaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtangaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103034" stop="104599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103334" g_stop="103525" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104299" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="888" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E702129" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103334" e_stop="103525"/>
          <exon e_start="103604" e_stop="104299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGG</genome_strand>
        <mrna_strand>GTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCTAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTANGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721333" ref_strand="+" ref_description="SGN-E721333 [FC13CA12]">
      <seq>ctgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103047" stop="104266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103347" g_stop="103525" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103966" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="542" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E721333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103347" e_stop="103525"/>
          <exon e_start="103604" e_stop="103966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAA</genome_strand>
        <mrna_strand>CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295695" ref_strand="+" ref_description="SGN-E295695 [cLET-25-H6]">
      <seq>aagagccggatgtttcaatcgattctgttaatgaaccgatggtgggggctgaggcctgcggcggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtgacattgaaggataaaactggatcgagttagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaattttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgacaaggtgaagagctcctacaagcttccaactccaaaggcagctgctcctgctcttgctaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103103" stop="104126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103350" g_stop="103525" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103826" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="401" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E295695" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103350" e_stop="103525"/>
          <exon e_start="103604" e_stop="103826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGA-ACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAA-TTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAA</genome_strand>
        <mrna_strand>AAGAGCCGGATGTTTCAATCGATTCTGTTAATGAACCGATGGTGGGGGCTGAGGCCTGCGGCGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTGACATTGAAGGATAAAACTGGATCGAGTTAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGACAAGGTGAAGAGCTCCTACAAGCTTCCAACTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708641" ref_strand="+" ref_description="SGN-E708641 [FA36BC12]">
      <seq>caatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaaaaagtgatcgaatgtaggaggaagggtaacattgtaaattttttggatctttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103079" stop="104582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103378" g_stop="103525" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104282" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="827" r_length="679" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E708641" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103378" e_stop="103525"/>
          <exon e_start="103604" e_stop="104282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGG</genome_strand>
        <mrna_strand>CAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAAAAGTGATCGAATGTAGGAGGAAGGGTAACATTGTAAATTTTTTGGATCTTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724282" ref_strand="+" ref_description="SGN-E724282 [FC23CE07]">
      <seq>accgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcaactgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103084" stop="104362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103384" g_stop="103525" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104062" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="601" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E724282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103384" e_stop="103525"/>
          <exon e_start="103604" e_stop="104062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCA</genome_strand>
        <mrna_strand>ACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAACTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621628" ref_strand="+" ref_description="SGN-E621628 [75376]">
      <seq>taaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcaattgaagataagcagaaaaaatcttccatcaaatttcaggaaaatgttgcttggtacaattggaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgctactgcgcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgttgctccaaaggctaaagactgctaccaaatcaagaagctaagccaaagcctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaacagcagctgtaaagactaaagcccctgtaaaagctaaggctgctgtaaagccaaaagctgctaatgagaagccagctaaggtagcaaggacatctacaaagtcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103161" stop="104414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103461" g_stop="103525" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104115" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="584" r_length="519" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E621628" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103461" e_stop="103525"/>
          <exon e_start="103604" e_stop="104115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTC-ATTGAAGATAAGCAG-AAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCT-CAATT-GAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAA-ACTGCTACCAAATCAA-AAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAA-AGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGAC</genome_strand>
        <mrna_strand>TAAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCAATTGAAGATAAGCAGAAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGGTACAATTGGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGTTGCTCCAAAGGCTAAAGACTGCTACCAAATCAAGAAGCTAAGCCAAAGCCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAACAGCAGCTGTAAAGACTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCTGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAAGTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554626" ref_strand="+" ref_description="SGN-E554626 [cTSC-4-O16]">
      <seq>aagagaagataattagagcataaactcaactaaaatggattattatataaaataaaaaaaacgaaaattacaactggaatttaaaatactattttctatattgggccgcagatacaaaccacccacaaagatccaagaaatttacaatgctacccttcctcctacattcgatcacttctttgccttcctggcggatgctttcttcgccggcgacttcacggtcttagatttcacactcttcaccggtgcctttttcacagctggcttcggtgcagctttcctcgacggagtcgacctagtagatgtccttgctaccttagctggcttctcattagccgcttttggctttacagcagccttagcttttacaggggctttaggctttacagctgctttcggctttgctacaactgccttaggctttgcagctggtttagctttggcagcaacaacaggctttggcttagcttttgatttggtagcagttttggcctttggagcagcaacctttggttttggcttcggctttgccttggtggccttctttgcctgtgctgcttttggcttagctatggactttttcttagcaagagcaggagcagctgcctttggagctggaagcttgtaggagctcttcaccttgacaagtttaccagaagccacaagcttcttcaattgagcaagcaacattttcctgaaatttgatggaagatttttctgcttatcttcaatgaactttgtgatcgcatactgactcgatccagttttatccttcaatgttacaatcgcttccctaatcatctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104704" stop="103299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104404" g_stop="103599" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E554626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104404" e_stop="103599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCTTAATCATCTGCA</genome_strand>
        <mrna_strand>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCCTAATCATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345656" ref_strand="+" ref_description="SGN-E345656 [cTOF-18-M22]">
      <seq>ttccatcaaatttcaggaaaatggttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103395" stop="104636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103695" g_stop="104336" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E345656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103695" e_stop="104336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCAAATTTCAGGAAAAT-GTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTA</genome_strand>
        <mrna_strand>TTCCATCAAATTTCAGGAAAATGGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294124" ref_strand="+" ref_description="SGN-E294124 [cLET-13-F13]">
      <seq>tcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103475" stop="104679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103775" g_stop="104379" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="616"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E294124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103775" e_stop="104379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</genome_strand>
        <mrna_strand>TCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344067" ref_strand="+" ref_description="SGN-E344067 [cTOF-12-D14]">
      <seq>gctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103502" stop="104692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103802" g_stop="104391" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="602"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E344067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103802" e_stop="104391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343507" ref_strand="+" ref_description="SGN-E343507 [cTOF-19-A12]">
      <seq>gctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattctcgctttttttattttatataataatccattttagctgagtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103502" stop="104688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103802" g_stop="104388" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E343507" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103802" e_stop="104388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCT</genome_strand>
        <mrna_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTCTCGCTTTTTTTATTTTATATAATAATCCATTTTAGCTGAGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351291" ref_strand="+" ref_description="SGN-E351291 [cTOS-6-D18]">
      <seq>taagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaattatcttctcttaattattattattattattataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103537" stop="104730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103837" g_stop="104438" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E351291" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103837" e_stop="104438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</genome_strand>
        <mrna_strand>TAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255009" ref_strand="-" ref_description="SGN-E255009 [cLEG-31-A9]">
      <seq>ccaaaggccaaaactgctaccaaatcaaaagttaagccaaagcctgttgttgctgccaaagttaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacattttttaggtcgactccgtcgaggaaagttgcaccgaagccagctgtgaaaaaggcaccggtgaaaagtgtgaaatttaagcccgtgaagtcgccggcaaaaaaagcatccgccaggaaggcaaaaaagtgttcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtggggggtttgaatttgcggcccaatatagaaaatagtattttaaattccagttggaattttggttttttttattttaaaaaaaaatccattttagttgagtttatgctctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103607" stop="106453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103907" g_stop="104391" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="534"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E255009" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255009" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103907" e_stop="104391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>CCAAAGGCCAAAACTGCTACCAAATCAAAAGTTAAGCCAAAGCCTGTTGTTGCTGCCAAAGTTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATTTTTTAGGTCGACTCCGTCGAGGAAAGTTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAAAGTGTGAAATTTAAGCCCGTGAAGTCGCCGGCAAAAAAAGCATCCGCCAGGAAGGCAAAAAAGTGTTCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGGGGTTTGAATTTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGGAATTTTGGTTTTTTTTATTTTAAAAAAAAATCCATTTTAGTTGAGTTTATGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348684" ref_strand="+" ref_description="SGN-E348684 [cTOF-30-N23]">
      <seq>caaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103627" stop="104692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103927" g_stop="104391" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="496"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E348684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103927" e_stop="104391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>CAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242324" ref_strand="+" ref_description="SGN-E242324 [cLEE-3-M20]">
      <seq>tgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103657" stop="104684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103957" g_stop="104383" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E242324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103957" e_stop="104383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTT</genome_strand>
        <mrna_strand>TGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711545" ref_strand="+" ref_description="SGN-E711545 [FB02BB12]">
      <seq>ccgtatagcctaaagcccctgtaaaagctaaggctgctgtaacccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103716" stop="106453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104016" g_stop="104379" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="382"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E711545" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104016" e_stop="104379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</genome_strand>
        <mrna_strand>CCGTATAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGT-AACCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720089" ref_strand="+" ref_description="SGN-E720089 [FC09DB08]">
      <seq>gcgattggcggccaatcggccgaattgaaagtagaagactgtaattgtatagttttcatgtctttgttggctaaaatatgaatagaacaagtggtaggtactagggggaaattacccgaagatggcctcaataaaacctagaattgttacacttatgtcccgccttgcttccacagcctcattcgatatctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcaaagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111994" stop="116260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112294" g_stop="112471" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="202" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="112967" i_length="496">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="697" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115852" g_stop="115960" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="806" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E720089" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112294" e_stop="112471"/>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="115852" e_stop="115960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCATGTAAGTTTAATTTGATGATTAAGTTTTCATATCCATTGATATTTTTCCCTTAATTGTTTCGTCAATCTGTATGGTGTTTAAAATTTGTATGGGTAAATTCAGGGGTAGGGCAAAGACGTCCATTGAAATCCCAAATGGTGTAAAATTACACTGTTTATATCTGGAAGTATATTTTTTTTTTTATGTATATATAGTTGATGTCGGAACTCTTTGAGGTCAAATTTCACAGTTTTTACTTTTTTTTTTTTAAAAAAATTAAATATGTATGTATTGTAGTTTACCCATCAAGCTAATGGGGACTTTTTCAATTGTTGGGCCAACTTTTCCGTTTCGAGAAGCTTCTAATTCTGCAGTTATGATCTTTTGGAACACAAAGACAAACTGCTATATCGTGTTAGTTTTTGGACACATAGGGAAATTTGAATGTTTGACAGTGGTTTGATTTATTTGACATTCTTTGTTTACGTTGTCAAAGCTGATTTTTTTTTTCTTCCAGCAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTC</genome_strand>
        <mrna_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTACCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAAAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718244" ref_strand="+" ref_description="SGN-E718244 [FC04AE01]">
      <seq>tcggccgaattggccttgcttccacagcctcattcgatatctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcaaagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112131" stop="117116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112417" g_stop="112471" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="112967" i_length="496">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="548" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="795" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116786" g_stop="116816" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="826" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E718244" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112417" e_stop="112471"/>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCATGTAAGTTTAATTTGATGATTAAGTTTTCATATCCATTGATATTTTTCCCTTAATTGTTTCGTCAATCTGTATGGTGTTTAAAATTTGTATGGGTAAATTCAGGGGTAGGGCAAAGACGTCCATTGAAATCCCAAATGGTGTAAAATTACACTGTTTATATCTGGAAGTATATTTTTTTTTTTATGTATATATAGTTGATGTCGGAACTCTTTGAGGTCAAATTTCACAGTTTTTACTTTTTTTTTTTTAAAAAAATTAAATATGTATGTATTGTAGTTTACCCATCAAGCTAATGGGGACTTTTTCAATTGTTGGGCCAACTTTTCCGTTTCGAGAAGCTTCTAATTCTGCAGTTATGATCTTTTGGAACACAAAGACAAACTGCTATATCGTGTTAGTTTTTGGACACATAGGGAAATTTGAATGTTTGACAGTGGTTTGATTTATTTGACATTCTTTGTTTACGTTGTCAAAGCTGATTTTTTTTTTCTTCCAGCAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGA</genome_strand>
        <mrna_strand>TCGGCCGA-AT-TGGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAAAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698045" ref_strand="+" ref_description="SGN-E698045 [FA05AD03]">
      <seq>cgcctatctcctcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcagagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgccagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggcggtgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112662" stop="116274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="515" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="115974" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="638" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E698045" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="115852" e_stop="115974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGG</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCCAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGCGGTGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620240" ref_strand="+" ref_description="SGN-E620240 [70939]">
      <seq>atggatacctcttcgattcattaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacgacgcaaacaatgtgcacagcgcagcggatgcacataccatggagaatatacaggaagtggacaatgcacataccatggaaaacatccaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggacacagcagaggtacaagttgcattccttcaggaacagccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagaggtgcaagttgctgaaaaggggtcaggtggtggtgaggaaaagaaatgggctggttggtccggagaaaatgttttcaggatgttagttccgttctcagaaggttggtggtatcattggtcgcaaaggagagtatattaaaacagcatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtttgtccatataaaagtggcttactctaaaagaaccaaagatccagaatggtgccatcaacattgagcatgtccagtgctggaagtccttctgaccatctgtcagaattaccttatccggacatcaatatccagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112662" stop="114931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="529" r_length="508" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="114492" i_length="1030">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114493" g_stop="114631" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="668" r_length="139" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E620240" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="114493" e_stop="114631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATA-C--GG-G--------GGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCC-TTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGA</genome_strand>
        <mrna_strand>TAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACGACGCAAACAATGTGCACAGCGCAGCGGATGCACATACCATGGAGAATATACAGGAAGTGGACAATGCACATACCATGGAAAACATCCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGACACAGCAGAGGTACAAGTTGCATTCCTTCAGGAACAGCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGGTGCAAGTTGCTGAAAAGGGGTCAGGTGGTGGTGAGGAAAAGAAATGGGCTGGTTGGTCCGGAGAAAATGTTTTCAGGATGTTAGTTCCGTTCTCAGAAGGTTGGTGGTATCATTGGTCGCAAAGGAGAGTATATTAAAACAGCATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCCATATAAAAGTGGCTTACTCTAAAAGAACCAAAGATCCAGAATGGTGCCATCAACATTGAGCATGTCCAGTGCTGGAAGTCCTTCTGACCATCTGTCAGAATTACCTTATCCGGACATCAATATCCAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327359" ref_strand="+" ref_description="SGN-E327359 [cTOC-19-A11]">
      <seq>atctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcagagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtttgtccatataaaagtggcttactctagaagaaccaaagatccagactgctgccatcaacattgagcattacaagtgctggaagtccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112662" stop="114885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="510" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="114492" i_length="1030">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114493" g_stop="114585" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="603" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E327359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="114493" e_stop="114585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCT</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445892" ref_strand="+" ref_description="SGN-E445892 [cSTA-19-M13]">
      <seq>tacctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacgacgcagacaatgtgcacagcgcagcggatgtacataccatggagaatatacaggaagtggacaatgcacataccatggaaaacatccaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaacagaagaggtacaagttgcattccttcaggaacagccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagaggtgcaagttgctgaaaatggttcaggtgatggtgaggaaaaaaaatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtatcattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112662" stop="113745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112968" g_stop="113445" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="506" r_length="490" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E445892" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112968" e_stop="113445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATA-C--GG-G--------GGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATG</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACGACGCAGACAATGTGCACAGCGCAGCGGATGTACATACCATGGAGAATATACAGGAAGTGGACAATGCACATACCATGGAAAACATCCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAAACAGAAGAGGTACAAGTTGCATTCCTTCAGGAACAGCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGGTGCAAGTTGCTGAAAATGGTTCAGGTGATGGTGAGGAAAAAAAATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATCATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210680" ref_strand="+" ref_description="SGN-E210680 [cLEC-68-P15]">
      <seq>gttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagcttgtgtgcaggtttgtccatataaaagtggcttactctagaagaaccaaagatccagactgctgccatcaacattgagcattacaagtgctggaagtccttctgacaatctgtcaaaattaccttatctggccatcaatatccagaagattgcaccgtgtctggtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaagggaatttttagtagatcgcagtgtaattggattatttgagaaattatgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112962" stop="117238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113262" g_stop="113462" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="114483" i_length="1021">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114484" g_stop="114645" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="363" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="610" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116786" g_stop="116933" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="758" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116934" i_stop="117018" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117019" g_stop="117026" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="766" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E210680" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113262" e_stop="113462"/>
          <exon e_start="114484" e_stop="114645"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116933"/>
          <exon e_start="117019" e_stop="117026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAAT</genome_strand>
        <mrna_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGGAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT.....................................................................................ATGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698000" ref_strand="+" ref_description="SGN-E698000 [FA04DG10]">
      <seq>gttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtcccccctgtttatggcagagatgcttcaatggggagctcatggaaatgcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113040" stop="117574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113340" g_stop="113462" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="370" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116786" g_stop="116934" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="519" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117019" g_stop="117274" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="777" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E698000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113340" e_stop="113462"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116934"/>
          <exon e_start="117019" e_stop="117274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGT-CCCCCTGTTTATGGCAGAGATGCTTCAAT-GGGAGCTCATGGAAATGCACAAC</genome_strand>
        <mrna_strand>GTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCCTGTTTATGGCAGAGATGCTTCAATGGGGAGCTCATGGAAATGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705303" ref_strand="+" ref_description="SGN-E705303 [FA26DA03]">
      <seq>cgggtaagtccttctgacaatctgtcaaaattaccttatctggccatcaatatccagaagattgcaccgtgtctggtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagggccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtccccctgtttatggcagagatgcttcaatgggagctcatggaaatgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114272" stop="117950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114572" g_stop="114645" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="322" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116786" g_stop="116934" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="471" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117019" g_stop="117297" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="750" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117488" g_stop="117650" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="913" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E705303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114572" e_stop="114645"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116934"/>
          <exon e_start="117019" e_stop="117297"/>
          <exon e_start="117488" e_stop="117650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGG-AAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCAT</genome_strand>
        <mrna_strand>CGGGTAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGGGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418725" ref_strand="+" ref_description="SGN-E418725 [STM-28-O5]">
      <seq>cgggccccccccataagcggattatacttgtggatcatgactccaatgctcctggtggtgctgggaaaccagcttctactagactacttgtggctgctacacaggctgcaatcctgatcggaaagcaaggtgcaactgttaagtctattcaagatgaatctcgttgcactattcgagtactcggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcagggtcatctaaggaaatttttagttgatcgcagtgtaattggattatttgagaaactaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctacccaaccttggggtccacctccatctagttttcccatgagtgctgggggtcctggatatggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115638" stop="117515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115910" g_stop="116098" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116786" g_stop="116934" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="339" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117019" g_stop="117215" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="536" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E418725" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115910" e_stop="116098"/>
          <exon e_start="116786" e_stop="116934"/>
          <exon e_start="117019" e_stop="117215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCA-GGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCA</genome_strand>
        <mrna_strand>CGGGCCCCCCCCATAAGCGGATTATACTTGTGGATCATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCTACTAGACTACTTGTGGCTGCTACACAGGCTGCAATCCTGATCGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCGTTGCACTATTCGAGTACTCGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGGTCATCTAAGGAAATTTTTAGTTGATCGCAGTGTAATTGGATTATTTGAGAAACTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTACCCAACCTTGGGGTCCACCTCCATCTAGTTTTCCCATGAGTGCTGGGGGTCCTGGATATGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728839" ref_strand="+" ref_description="SGN-E728839 [LA19AE04]">
      <seq>gggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtccccctgtttatggcagagatgcttcaatgggagctcatggaaatgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataatgggtctgcctcacaagtccaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115672" stop="117966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115972" g_stop="116098" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116786" g_stop="116934" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="276" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117019" g_stop="117297" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117488" g_stop="117664" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="731" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E728839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115972" e_stop="116098"/>
          <exon e_start="116786" e_stop="116934"/>
          <exon e_start="117019" e_stop="117297"/>
          <exon e_start="117488" e_stop="117664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACA</genome_strand>
        <mrna_strand>GGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGAT-AATGGGTCTGCCTCACAAGTCCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248887" ref_strand="+" ref_description="SGN-E248887 [cLEF-49-K18]">
      <seq>cttcaatgggagctcatggaaatgcacaagcacaacagtcaatattttcaaaggtcacacacaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgccttctgcattctcaactgtctctatcacatcttttattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116945" stop="119942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117245" g_stop="117297" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117488" g_stop="117682" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="248" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119294" g_stop="119642" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="597" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E248887" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117245" e_stop="117297"/>
          <exon e_start="117488" e_stop="117682"/>
          <exon e_start="119294" e_stop="119642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTA</genome_strand>
        <mrna_strand>CTTCAATGGGAGCTCATGGAAATGCACAAGCACAACAGTCAATATTTTCAAAG..............................................................................................................................................................................................GTCACACACAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGCCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278658" ref_strand="+" ref_description="SGN-E278658 [cLER-10-J7]">
      <seq>tgggagcggatggagctgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgtattacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtgtgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggagggagctaccggtattaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116951" stop="119769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117251" g_stop="117297" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190">
            <donor d_prob="0.995" d_score="0.91"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117488" g_stop="117682" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="242" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119294" g_stop="119469" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="418" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E278658" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117251" e_stop="117297"/>
          <exon e_start="117488" e_stop="117682"/>
          <exon e_start="119294" e_stop="119469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAG</genome_strand>
        <mrna_strand>TGGGAGCGGATGGAGCTGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGTATTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTGTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGGAGCTACCGGTATTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442717" ref_strand="-" ref_description="SGN-E442717 [cSTA-34-N3]">
      <seq>agtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcgatcgctgatgctaccagttcaatgcagaacaccgcggctggaccaccttcccaaggttataatccctacccatctcagggtcatgtgtactcttcatcaactggtcatgcgccatccacagattatggttctgtttatggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaagtatgagtcctcagctgttgggaaattttagctctttagttacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttctgcattctcaactgtcatcacatttttttatttttaccattatataactagtgaaatcaaattcaaaaactaatgctaggtgcttctccattactattaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117275" stop="119982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117575" g_stop="117682" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119681" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="487" r_length="379" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E442717" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442717" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117575" e_stop="117682"/>
          <exon e_start="119294" e_stop="119681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTAATGCT</genome_strand>
        <mrna_strand>AGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATCGCTGATGCTACCAGTTCAATGCAGAACACCGCGGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCATCTCAGGGTCATGTGTACTCTTCAT-CA------A--CTGGTCATGCGCCATCCACAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAAGTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTCTGCATTCTCAACTG--TC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTGAAATCAAATTCAAAAACTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357489" ref_strand="+" ref_description="SGN-E357489 [cTOS-23-E12]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117277" stop="119977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117577" g_stop="117682" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119680" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="493" r_length="387" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E357489" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117577" e_stop="117682"/>
          <exon e_start="119294" e_stop="119680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGC</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354246" ref_strand="+" ref_description="SGN-E354246 [cTOS-16-B13]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117277" stop="119977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117577" g_stop="117682" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119679" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="492" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E354246" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117577" e_stop="117682"/>
          <exon e_start="119294" e_stop="119679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATG</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349594" ref_strand="+" ref_description="SGN-E349594 [cTOS-1-B4]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117277" stop="119973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117577" g_stop="117682" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119676" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="489" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E349594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117577" e_stop="117682"/>
          <exon e_start="119294" e_stop="119676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372616" ref_strand="+" ref_description="SGN-E372616 [TUS-31-M23](-)">
      <seq>tgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117340" stop="119827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117640" g_stop="117682" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119526" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="276" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E372616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117640" e_stop="117682"/>
          <exon e_start="119294" e_stop="119526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>TGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292196" ref_strand="+" ref_description="SGN-E292196 [cLET-1-H11]">
      <seq>gggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117341" stop="119827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117641" g_stop="117682" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119526" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="275" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E292196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117641" e_stop="117682"/>
          <exon e_start="119294" e_stop="119526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372617" ref_strand="+" ref_description="SGN-E372617 [TUS-31-M23]">
      <seq>gggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117341" stop="119827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117641" g_stop="117682" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119526" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="275" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E372617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117641" e_stop="117682"/>
          <exon e_start="119294" e_stop="119526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587282" ref_strand="+" ref_description="SGN-E587282 [78397]">
      <seq>cctcgtgccgaattcggcacgaggcacaagtccaaacagcacaacaattagttcagaattcgatcgctgatgctaccagttcaatgcagaacaccgcggctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatcaactggtcacgctggtcatgcgccatccgcagattatggttctgtttatggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgaatcttcagctgttgggaaattttagctctttagttaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgcttaatttcctgtcttctgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117351" stop="119957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117654" g_stop="117682" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="56" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119294" g_stop="119657" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="422" r_length="366" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E587282" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117654" e_stop="117682"/>
          <exon e_start="119294" e_stop="119657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTT-ATTTTTACCA--ATATAACTAGTG</genome_strand>
        <mrna_strand>AAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATCGCTGATGCTACCAGTTCAATGCAGAACACCGCGGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCAACTGGTCACGCTGGTCATGCGCCATCCGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAATCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGCTTAATTTCCTGTCTTCTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232598" ref_strand="+" ref_description="SGN-E232598 [cLEL-5-J5](-)">
      <seq>aattccgtctgtcttactactgagatgtctagatgcatgttaattctgactacccttatttcttatgttgcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaactaatgctatttttctgcaagagagatattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118921" stop="120006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119221" g_stop="119703" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E232598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119221" e_stop="119703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</genome_strand>
        <mrna_strand>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596502" ref_strand="+" ref_description="SGN-E596502 [39985]">
      <seq>ggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgagtcctcagctgttgggaaattttagctctttattacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttgtgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtaaaatcaaattcaaaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119147" stop="119977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119447" g_stop="119676" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="232" polyA_stop="245"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E596502" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119447" e_stop="119676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTA-TTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTGTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTAAAATCAAATTCAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598473" ref_strand="+" ref_description="SGN-E598473 [74145]">
      <seq>ggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgagtcctcagctgttgggaaattttagctctttagttacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttgtgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtaaaatcaaattcaaaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119147" stop="119977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119447" g_stop="119676" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="233" polyA_stop="246"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E598473" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119447" e_stop="119676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTGTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTAAAATCAAATTCAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232242" ref_strand="+" ref_description="SGN-E232242 [cLEL-5-J5](-)">
      <seq>cggttattaaaggatatcccgttcaaaccagccctagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaactaatgccccctttctgcaagaaagccacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119158" stop="119980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119458" g_stop="119698" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="248" polyA_stop="264"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E232242" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119458" e_stop="119698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAG</genome_strand>
        <mrna_strand>CGGTTATTAAAGGATATCCCGTTCAAACCAGCCCTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCCCCCTTTCTGCAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315564" ref_strand="+" ref_description="SGN-E315564 [cTOA-22-C22]">
      <seq>tccaaggttaatgttccgatactgggaattttggagaatatgagctactttaaatgcccaaaatgcaatgaatcgtcctttatctttggtcaaggaggagctaggaaaacagctgaggagatgggtctgaaatttcttggtgagataccacttgaagtggagatcagaagcggttccgacgaaggtgttcccattgttatgtcaaaccctgattctgtaatctctcaagtatatggcaatgtggctgaaaaagttgtcatgaggcttgaagaggtagataaggagcaacacttcaggccagatgtatctctttaaatgcgttgatcaagctctccaccaacttgagtgtagtagtaactactagaatccaacccttctaacaaaatcagagaaaaatctagttggctctggatatagagttaaaggaagtccattatcaggagaagttgtgacgccgatgtgcttgctgggagggagcaatcttgttgacttactgagttatcactcaacaattaacactaactgaaagttgcaggaataatgatgtatccttttagctaattgaacccatcttttcaacatgaaaagataatatttacaaatgatgaacatagcgtggattgagaaggtttagtcattctcatctttctaggaaaaaaaggggaaatcaaagatttttcatggattggatttcttatctttatttcttccaattggatgctgcttgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122182" stop="119714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121882" g_stop="121865" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121864" i_stop="121026" i_length="839">
            <donor d_prob="0.734" d_score="0.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121025" g_stop="120900" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="144" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120899" i_stop="120604" i_length="296">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120603" g_stop="120014" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="732" r_length="588" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E315564" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121882" e_stop="121865"/>
          <exon e_start="121025" e_stop="120900"/>
          <exon e_start="120603" e_stop="120014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGTTAATGTTCCGGTATGATCCATACTGAGCTTGCTGTGTACGAGCTTATAACAACAATGAGAGAGTAGGATTAAAATATGGGGCGGAGAAGCAATATTTGTGACTTGCATTGGGTTAGTTGTGAAGTATAAATATGAACTCCTGGATAAAACTTAAAAAAGTATGTGCCTTATTTGATTTATCACTCATAAATAGTGACTTAATGATTGAAATAGCCATCAAACCCCATTACTGGGCCTATGTACTTTTAGTGCTTTACACTCCTCTTCATCTTGTTGATGTGGAATCTAGTAGAGAGCTAAGAAATGTTACCTAGATATCAGATGAATGTTCGATGTTTTAAGAAGTCAGTTTTCATGTTTTTTTATGTTCCATGGGTAATCCCCACACACACACACTAGAATCTAGATCCAAGGATATGACATTGATAACTAGATGCAGAGATATGCAATTTCATCTGTTTGGAACTCCACCTCTTCCATGAAAAAAAGGGAACACTTAAGTGAAACTATGTTGCATGGATAGACTGATATTATGTACCTAAACACAAGACTAAGAACAAAAGGGTAAGGACTCTTATAAAATCGAGCAGAGTCATAACAATGTTGACACTGTTACGTCTTTGAACTGGAACAGTTTGGATACTGACATACTGTTACTCTGAGACGAATTTCAGGCTAACAATATTAATTGAAGTTGGATTGAGAAAATGCTGTTTCCTTACTGCTACCAACCTAATGTATAAATAGAGAAGGCTTAGAATAGATATACATTGAGATATCATGCAGACGCATGCTATAGCTTAATGCATCTATGATATAGTTATAATTAAACAGTTGTTCTTAACACAGATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAGGTATGTCACTGATTATCTTCTCTCTTTTGAATACAAACACTCATGAGCCCCCCTCGATTGGATGCCTAGAAAAGCTTACTGCAGGCACTTCTAGGAAATCTATAATGAAAGGATCCTTAAAATGGTCCCATCACATTCTCATGATGCTTCTTTGTTTCCCTTTTTTGTGGCCATTTCTTTTCTGCTGTCACACTCTTTAACTATTTTGTTTAAGATACAATTAGATTGCTGATACCTTTTCTCAACTTTAATTTTCATCATAAATGTTGTGTTAATTGATGTGTGTCCCCTAGTAGATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</genome_strand>
        <mrna_strand>TCCAAGGTTAATGTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG........................................................................................................................................................................................................................................................................................................ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGGGAAATCAAAGATTTTTCATGGATTGGATTTCTTATCTTTATTTCTTCC-AA-TTGGATGCTGCTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548352" ref_strand="+" ref_description="SGN-E548352 [TUS-60-G14]">
      <seq>caaatacaaagatatttggtcgggaactcagtctaggtggcgctaagtcaggtcccatcagcataaatttttctccgaaggtggaagaagagctgagttttgcttcagattcgtacgaagtacaagcagcgctaggtagttctcaggtttatgggaactcatcaaacgggtatcgaagtgatgaaggtgaagggaaactttacaaggaagaattagatgaacggaaaccaagaaagaggggcagaaagcctgccaatgggagggaagaagcattgaatcatgttgaagcagagaggcaaaggcgtgagaagctaaaccagaggttttatgctttaagagcagttgttccgaatatctcaaagatggataaagcatcgctgcttggagatgcaattgcttatatcacagatctccaggcaagaattagggttttagatgctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgangatttgaaggaaaagctgacagctgctctgtctaaatgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126527" stop="127926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126827" g_stop="127626" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E548352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126827" e_stop="127626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACC</genome_strand>
        <mrna_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGANGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTT-AAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286080" ref_strand="+" ref_description="SGN-E286080 [cLES-13-G8]">
      <seq>aaatacaaagatatttggtcgggaactcagtctaggtggcgctaagtcaggtcccatcagcataaatttttctccgaaggtggaagaagagctgagttttgcttcagattcgtacgaagtacaagcagcgcttggtagttctcaggtttatgggaactcatcaaacgggtatcgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126528" stop="127305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126828" g_stop="127005" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E286080" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126828" e_stop="127005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGT</genome_strand>
        <mrna_strand>AAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTTGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540236" ref_strand="+" ref_description="SGN-E540236 [TUS-60-G14](-)">
      <seq>atggataaagcatcgctgcttggagatgcaattgcttatatcacagatctccaggcaagaattagggttttagatgctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgaggatttgaaggaaaagctgacagctgctctgtctaaatgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaaagacccggtggtcagtatcagtgatcagattgttatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatacaatctaaatgtaagttttggccgagaatggtatctgcttttagaattagaatgaaaacctgcagctgctcaacatgaagtcaatcatgctatgtatgttgtttgtagttgatgcaagttagttcttgtttactggtgattcttatgtgagtggtcagactatcatacttccgtctagtatttacgtatgaacgtcgcataatgtttgagagtttatattaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126889" stop="128253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127189" g_stop="127950" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="780"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E540236" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127189" e_stop="127950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATT</genome_strand>
        <mrna_strand>ATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATG-TTTGAGAGTTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717090" ref_strand="+" ref_description="SGN-E717090 [FB18DF03]">
      <seq>ctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgaggatttgaaggaaaagctgacagctgctctgtctaagtgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaaagacccggtggtcagtatcagtgatcagattgttatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatacaatctaaatgtaagttttggccgagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126965" stop="128057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127265" g_stop="127756" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="512"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E717090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127265" e_stop="127756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGA</genome_strand>
        <mrna_strand>CTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAGTGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569314" ref_strand="+" ref_description="SGN-E569314 [13734]">
      <seq>ctcagattgctatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatataatctatatgtaagttttggccgagaatggtatctgcttttagaattagaatgaaaacctgcagctgctcaacaatgaagtcgatcatgctatgtatgttgtttgtagttgatgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="127346" stop="128146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127645" g_stop="127846" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="214"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-E569314" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127645" e_stop="127846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAAC-ATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAA</genome_strand>
        <mrna_strand>CTCAGATTGCTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATATAATCTATATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACAATGAAGTCGATCATGCTATGTATGTTGTTTGTAGTTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477221" ref_strand="+" ref_description="SGN-E477221 [cSTB-47-F17]">
      <seq>gcaaaggctatataaatcctttcgtgaagttcattgatcagggaagacgtttcatctgtaacttgtgtggacatactgatgaaactccacgtgactatcagtgcaacttaggtccagatggcaggcgtagggatgctgatgaaaggcctgaactatgccgaggaactgttgagtttgtcgctaccaaggaatatatggtgcgagatccgatgcccgctgtgtatttcttcctgatagacgtttccatgaatgccatacagactggtgcaactgcagctgcttgcagtgcgatcagccaagttatttcagatctccctgacggtcctcggacattggtcggagttgctacatttgactcaactatccacttctacaatctcaagcgcgcattgcagcagccattgatgcttatagtccctgatgtacaagacgtttataccccccttcagactgatgttattgtgcagctctcggagtgccgtcaacacctagagcttctgctagaaagcatcccaacaatgttccagaacaacaggactgctgattcagcttttggagctgcagtcaaggctgctttcttggcaatgaaaagcacaggaggcaaacttcttgtgtttcaatcagtcctgccatctactggtattggagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="140842" stop="136202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140542" g_stop="140474" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140473" i_stop="140140" i_length="334">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140139" g_stop="140012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="197" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140011" i_stop="139702" i_length="310">
            <donor d_prob="0.489" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139701" g_stop="139582" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139581" i_stop="138389" i_length="1193">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138388" g_stop="138308" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="398" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138307" i_stop="137545" i_length="763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137544" g_stop="137467" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="476" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137466" i_stop="137358" i_length="109">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137357" g_stop="137265" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="569" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137264" i_stop="136557" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136556" g_stop="136502" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="624" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-E477221" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140542" e_stop="140474"/>
          <exon e_start="140139" e_stop="140012"/>
          <exon e_start="139701" e_stop="139582"/>
          <exon e_start="138388" e_stop="138308"/>
          <exon e_start="137544" e_stop="137467"/>
          <exon e_start="137357" e_stop="137265"/>
          <exon e_start="136556" e_stop="136502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGATTCATCTGTAACTTGTGTGGTAAGAATGAAGTTCATTTATTCCCACTGAAGTTATGTGATATTTGGAGTCTAGAGCTGCTCTAGATATTATTTTACAGACTCAAGATAGAAATGCAATATGATAAGGTTGTCTGATGTTTTGTGAAAAAACTAAAGGTTCTGAAACAGAAGTATCAAATTTTACATTGCTAATGATATTTTTCTTCTCCAACTACTCTAACAAAAAACACACACATTCTCAGATGTCTAATATACATTTATACCGGTCAACTGAGGACGTCCAATGCTGCATTTTGAATGAAAATTTGCTGTTATGTAGTTTTATCTCATCTGTCTTGCCATCCTTTTTGCAGGACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACCGTTGAGTTTGTCGCTACCAAGGAGTATATGGTTGGTACCTTTTGGATACATTGGTTCAGGGATGTGATTGCATGACATTATAGGAGTAATGCAGTATTAAGTAGACATTCCGTGCTCTGAACTTTCAGTTCAGCTAGCTTTGGGCTTTCAAATTTACCATCTGAATTTGTTTGGGTATTTGGGGAAGCTAACCACAACAGAGTGGAACAAAAAAAAAATTATATTGCAATATCAAATAATTTGTAGATGCACTCCTTTCTTTGGTGTAGGGAATCCCTTAATTCGATTTTGTAACTTTTGGATTTTGCTGTAATAACTTGATATTTGTATCGTAATTCAGGTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCTGTAAGTCCTATAGTTTGTTTATGATGATGCAACATGCATTTTTGTACCTTCAGATTAGAGAGAAAAGTATTTGGCTCGTCTTCTCGTGTGGAATCATCATAAATTAATTACATTCTCCTACTAAATCTGTGACATTAACTAGAACATCTGATGTAGGAAAGCAATTATCCATGTAATTTGTCCTTTGAGATGATGAGAAAGGTTATTGAGGCATCTGAATTGTGGAAAACCTAGTTTCTCCATTCAGAATAGTGCAGTGTTGCACTAATGTTGCTTGGTCACTTTGGTTTATCCAAGAGTTCATTGTGGAATATCTGTATTTAGTGGCTGTTGGCCCCAGGGGTGGGTGGTTGGGGGATGGATTAGGCAAAAAAGATGAAGAGATTATGATAACCTGCCAATTTGTATGAGTTCGTTGACAGCGTAAGGGTGATCCATCTCGATGACGAATTCCATGATACCAAGAAATCGAAATTAATCGTTCAATGTCTACTCGTTCTCCCCTCTTCAATTCCCAATGAACAGCATGATCTTGACCTATCATTTGTTCAATTTGGCCGATTTGATACTTAGTTAATTCTGTCACCTAGTCGATAACGAACCTGAATGGCTTTGGTTGAGGCAACTCTTACTTGTTCACCACCAACTAATATAGCTCCTGAAATATATAGCATTTTTAATCCTTCCTTTTGCTAGTCTTCTCGGCTGGAATCATAAAAAGGTTGTCTCCTCTTTCATGATCCTTTCTATAGGTAGAACTACTGTGAGCAGTATAAACTTCGACCCTTATTTTTTTCTTCATATTGTAAAGGGGAGCATTCTCCTTAAAACAATAGCTTGTAATAATTCCAGAAGGTAATAGGAAAATGAAGGATGTGACAAGAATTTAGGTGAACCCTTGAATGTCTTCAATTGAAGGGTTCTTTTTTCGGCATCTGGTGTTATTCTAGTTGCATGAACCATAGATTGATCTAGTAAGCAAATCAATCTATGATCTAATGGAACTCGTGAGAGATGGGATCATTCAAGTGGTTAGAATGATGCGTTCACTAGGAGGCATAGATTAGGGAATAGATACTATTTGTGATACAGTTCACTAAGAATTAAGATGCATTTCTATTCAATTTTGATGCACAATAGGAATTATTTAGAGTTTATGAGCTGTCTTTGACATTGAAAACTTATTATTGCAGGACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAGGTTTAACACATTCAAAGATGCTTTGATTCAGTGTTGTACCTTAATTAATTATCTTTACCTTTTTCTCTTTGTTGAGCTAATGATGAACTGACAATTACTTTTAAGGGAAAAGTGCAGTACTACTAGAATGATTATTGCTGGATTTCAGAAATGTGTTGCCTAGATGATTGTAAATGCATTTCTTAAAGAATTTCTGTAAGTGAATATAATAAAAATCTTTAACTAACTGAATGTTGCTCGGACTCTTAAAAAATGTCAATGGTGCGTCTAGGATCCTCCAAAAATAGCGCATTTTTGGAGGGTCCGACATCGGTGCGACAACATTTTTGGAGAGTCTTGAACAATATAGATGATGCAAACAGAGTTAGTAGTACTTAATAAACAAAGTGTTTTTCATCTAAAACAAAGAAATTATTCTTGTTTCCTTTTTCATTTGTCTTGACTTGTCTGTGATTTAAATCATGGTTTGCAGGAAGAAAGTTTTAGCCTTCAAAAATCGTACTTTGTAGTTTCAACTTCTCTGTCTAAATTTGCTGCTCATTCCCTTGCTGCATAATTGCTCCATTTTGCTTAATTATGCAGTTCTTTCATTCTTCTTCTATGGTATAGTTGGATTATATTTTACTTGTTCAGTGTTTCTCTGATTTCACTTGCTCATTTTTCTTTAATATGGATGCTTAAATGGGATTAGGGTTGTGGCAAACGATTTATGTTGATGAAGTGCTTGTTTTCTGATAAGTTGATTCTGGATCTACCTATGCAGCCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAGGTTAGTTCTGCAAGATGTTGACCATTTTTTATCATGTTCCCCTTATTAAAAGCAGAATGAGTAGGATCATCAGTGAGTCCTATGAGTTGTTACTTGTTTGTGTTTTCAGTGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAGGTATCAGTGCTTTACATAAAGTTAGTTTCCCACTTGTTTTGTATTCCAAGTTGTTATTTCTGTTATAAATCCACTTGTTTTGTATTGCTTTGTTAAAAATAGAGTAAGTATTTTCTGCGTTCCTTCTAGAACGTGAGTAATTAGGTCAACACAGTTGCCTGAGGCTTTGCCATTCTGAGAAAAAGATTGGAATTATTTAGTGTTATGTCTCTACAGGCAGATGCAGGGGCAGACCCAACCTTACAGTAACAAATTCATCTAAACCCGATAGTTTTGACTCGAAGCATAAATTTATGTGTAAAAATTGACTAAGATTGCAGTAAACGGTAGATATAAAGCCATAACTTCAAAAATATTGATGCACCCAAGGGAATGACGTAGTGGTCAATGAAGTGGCTTGGGAACCATGAGTTCTAGCCTTGTTGAACTGAGTTACCTGATGCATGTTGTTGCTGGTGGGAGGTGACAACTGACAGGTTTCCCATGGAATTAGTCGAGGTGTGAGTAAGTTGGCACAGACACCATGGTCATCAAAAAAGAAACTTTGAAAATATTAATGAGCTCAATGCTAGGAACTTAAAGGTTGAACCCATAGAATTTAAATTAGGAATTCGCCTCCATGCAGTTGAGTGATTGCAAGTCTAACTTTAACAGTCTATGATGGATTATCATATTGATCGACTCTTACTTCTAGTTTTGTTACTTCAGGCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAG</genome_strand>
        <mrna_strand>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGTTTCATCTGTAACTTGTGTG..............................................................................................................................................................................................................................................................................................................................................GACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACTGTTGAGTTTGTCGCTACCAAGGAATATATG......................................................................................................................................................................................................................................................................................................................GTGCGAGATCCGATGCCCGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCGATCAGCCAAGTTATTTCAGATCTCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGCGCATTGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGATGCTTATAGTCCCTGATGTACAAGACGTTTATACCCCCCTTCAGACTGATGTTATTGTGCAGCTCTCGGAG.............................................................................................................TGCCGTCAACACCTAGAGCTTCTGCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGACTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCTTGGCAATGAAAAGCACAGGAGGCAAACTTCTTGTGTTTCAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>239</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2325" PGL_stop="3364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2331" e_stop="2460"/>
            <exon e_start="2699" e_stop="3364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2331" e_stop="2460" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2699" e_stop="3364" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2331" stop="2460"/>
              <exon start="2699" stop="2990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2336" stop="2460"/>
              <exon start="2699" stop="3364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2336" stop="2460"/>
              <exon start="2699" stop="3133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2337" stop="2460"/>
              <exon start="2699" stop="2752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG : AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</gDNA_template>
            <first_frame> N  H  K  N  Q  V  Q  *  Y  L  L  R  I  S  F  L  C  L  L  E  *  G  E  K  S  H  H  K  S  P  F  S  A  L  C  F  S  I  Y  F  L  T  S   : E  T  E  G  W  S  G  D  C  G  Y  I  F  H  R  R  A  C  *  R  I  V  W  I  Q  *  *  L  F  *  F  P  G  N  L  L  F  E  K  I  F  R  I  Y  S  H  S  A  V  W  I  F  E  H  C  C  F  C  L  D  F  Q  A  C  R  S  D  S  E  L  *  W  N  L  I  E  S  V  I  G  S  V  E  N  D  C  C  S  S  A  S  G  S  K  L  F  G  K  *  G  T  W  P  Y  S  I  W  V  I  W  F  T  S  L  W  W  V  H  G  G  K  L  S  G  F  *  V  Q  G  R  F  I  S  Y  Q  I  E  V  L  Q  E  T  C  H  Q  T  G  P  H  G  F  L  I  S  Q  N  A  T  T  F  N  I  T  A  C  *  Y  C  Q  V  S  F  *  R  S  K  E  I  R  K  N  S  P  K  F  H  G  F  D  T  I  *  P  Q  S  G  C  R  F  *  E  *  G  F  L  E  *  *  V  T  V  F  *  T  M  G  W  A  S  V  F  K  </first_frame>
            <second_frame>  T  I  K  T  K  Y  S  N  I  Y  C  A  F  R  F  F  A  Y  *  N  K  E  K  N  L  I  I  N  H  P  F  Q  H  S  A  S  V  Y  T  F  *  H  Q  :  K  L  K  G  G  V  V  I  V  D  I  F  F  I  D  V  R  V  E  E  *  F  G  F  S  D  S  Y  F  D  F  L  V  T  Y  C  L  R  K  F  L  G  S  T  V  I  Q  Q  Y  G  S  L  N  T  V  V  S  A  *  I  F  R  L  V  D  Q  I  V  S  Y  S  G  I  *  S  N  R  L  L  A  L  L  K  M  I  V  V  P  Q  H  R  D  Q  N  Y  L  E  S  R  A  H  G  P  T  R  F  G  S  F  G  S  P  P  S  G  G  F  M  E  V  N  C  R  A  F  E  S  R  A  G  L  Y  H  T  K  S  K  S  C  K  K  P  V  I  K  R  A  L  T  G  S  L  S  P  K  T  R  P  P  L  T  S  L  P  V  N  T  V  K  S  H  S  E  D  Q  K  K  S  G  K  T  A  Q  N  F  M  V  S  I  P  F  N  L  K  V  D  V  G  S  R  N  E  G  S  L  N  D  E  L  P  F  S  E  L  W  A  G  P  A  Y  S  N </second_frame>
            <third_frame>   P  *  K  P  S  T  V  I  S  T  A  H  F  V  S  L  L  I  R  I  R  R  K  I  S  S  *  I  T  L  F  S  T  L  L  Q  Y  I  L  S  D  I  R :   N  *  R  V  E  W  *  L  W  I  Y  F  S  *  T  C  V  L  K  N  S  L  D  S  V  I  V  I  L  I  S  W  *  P  I  V  *  E  N  F  *  D  L  Q  S  F  S  S  M  D  L  *  T  L  L  F  L  L  R  F  S  G  L  S  I  R  *  *  V  I  V  E  F  D  R  I  G  Y  W  L  C  *  K  *  L  L  F  L  S  I  G  I  K  T  I  W  K  V  G  H  M  A  L  L  D  L  G  H  L  V  H  L  P  L  V  G  S  W  R  *  I  V  G  L  L  S  P  G  Q  V  Y  I  I  P  N  R  S  L  A  R  N  L  S  S  N  G  P  S  R  V  P  Y  L  P  K  R  D  H  L  *  H  H  C  L  L  I  L  S  S  L  I  L  K  I  K  R  N  Q  E  K  Q  P  K  I  S  W  F  R  Y  H  L  T  S  K  W  M  *  V  L  G  M  R  V  P  *  M  M  S  Y  R  F  L  N  Y  G  L  G  Q  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2921" stop="3364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRLLALLKMIVVPQHRDQNYLESRAHGPTRFGSFGSPPSGGFMEVNCRAFESRAGLYHTKSKSCKKPVIKRALTGSLSPKTRPPLTSLPVNTVKSHSEDQKKSGKTAQNFMVSIPFNLKVDVGSRNEGSLNDELPFSELWAGPAYSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2325" e_stop="2460"/>
            <exon e_start="2699" e_stop="2794"/>
            <exon e_start="2876" e_stop="3199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.664" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2325" e_stop="2460" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2699" e_stop="2794" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.664">
            <gDNA_intron_boundary i_start="2795" i_stop="2875" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2876" e_stop="3199" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2325" stop="2460"/>
              <exon start="2699" stop="2794"/>
              <exon start="2876" stop="3199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2337" stop="2460"/>
              <exon start="2699" stop="2752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG : AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTG : ATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</gDNA_template>
            <first_frame> T  D  N  H  K  N  Q  V  Q  *  Y  L  L  R  I  S  F  L  C  L  L  E  *  G  E  K  S  H  H  K  S  P  F  S  A  L  C  F  S  I  Y  F  L  T  S   : E  T  E  G  W  S  G  D  C  G  Y  I  F  H  R  R  A  C  *  R  I  V  W  I  Q  *  *  L  F  *  F  P   : D  F  Q  A  C  R  S  D  S  E  L  *  W  N  L  I  E  S  V  I  G  S  V  E  N  D  C  C  S  S  A  S  G  S  K  L  F  G  K  *  G  T  W  P  Y  S  I  W  V  I  W  F  T  S  L  W  W  V  H  G  G  K  L  S  G  F  *  V  Q  G  R  F  I  S  Y  Q  I  E  V  L  Q  E  T  C  H  Q  T  G  P  H  G  F  L  I  S  Q  N  A  T  T  F  N  I  T  A  C  *  Y  </first_frame>
            <second_frame>  L  T  T  I  K  T  K  Y  S  N  I  Y  C  A  F  R  F  F  A  Y  *  N  K  E  K  N  L  I  I  N  H  P  F  Q  H  S  A  S  V  Y  T  F  *  H  Q  :  K  L  K  G  G  V  V  I  V  D  I  F  F  I  D  V  R  V  E  E  *  F  G  F  S  D  S  Y  F  D  F  L  :  I  F  R  L  V  D  Q  I  V  S  Y  S  G  I  *  S  N  R  L  L  A  L  L  K  M  I  V  V  P  Q  H  R  D  Q  N  Y  L  E  S  R  A  H  G  P  T  R  F  G  S  F  G  S  P  P  S  G  G  F  M  E  V  N  C  R  A  F  E  S  R  A  G  L  Y  H  T  K  S  K  S  C  K  K  P  V  I  K  R  A  L  T  G  S  L  S  P  K  T  R  P  P  L  T  S  L  P  V  N  T </second_frame>
            <third_frame>   *  Q  P  *  K  P  S  T  V  I  S  T  A  H  F  V  S  L  L  I  R  I  R  R  K  I  S  S  *  I  T  L  F  S  T  L  L  Q  Y  I  L  S  D  I  R :   N  *  R  V  E  W  *  L  W  I  Y  F  S  *  T  C  V  L  K  N  S  L  D  S  V  I  V  I  L  I  S  * :   F  S  G  L  S  I  R  *  *  V  I  V  E  F  D  R  I  G  Y  W  L  C  *  K  *  L  L  F  L  S  I  G  I  K  T  I  W  K  V  G  H  M  A  L  L  D  L  G  H  L  V  H  L  P  L  V  G  S  W  R  *  I  V  G  L  L  S  P  G  Q  V  Y  I  I  P  N  R  S  L  A  R  N  L  S  S  N  G  P  S  R  V  P  Y  L  P  K  R  D  H  L  *  H  H  C  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2921" stop="3199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRLLALLKMIVVPQHRDQNYLESRAHGPTRFGSFGSPPSGGFMEVNCRAFESRAGLYHTKSKSCKKPVIKRALTGSLSPKTRPPLTSLPVNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3398" PGL_stop="5681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3398" e_stop="4628"/>
            <exon e_start="4750" e_stop="5009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3398" e_stop="4628" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="4750" e_stop="5009" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3398" stop="4083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3424" stop="3860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3562" stop="4052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3894" stop="4550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4121" stop="4628"/>
              <exon start="4750" stop="5009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4412" stop="4628"/>
              <exon start="4750" stop="5007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4524" stop="4628"/>
              <exon start="4750" stop="5007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4761" stop="4994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG : CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCC</gDNA_template>
            <first_frame> F  F  L  R  P  K  R  N  A  S  L  E  F  P  T  S  A  C  D  I  H  L  R  P  I  A  K  S  A  P  A  S  P  T  R  E  S  S  L  S  P  G  I  V  F  D  N  T  D  S  V  T  Q  T  L  R  R  M  L  N  L  E  T  N  A  Q  I  L  L  E  T  N  D  G  *  M  C  G  G  S  S  E  *  Q  L  T  R  V  L  F  S  F  R  I  G  *  *  *  I  V  R  M  V  N  N  S  V  F  S  *  *  V  T  V  S  L  S  V  C  H  G  R  S  V  V  K  L  Q  H  L  S  R  L  V  I  L  R  G  I  Q  Y  E  Q  W  L  V  D  R  Y  S  P  G  I  F  K  V  R  A  V  M  V  R  L  *  G  V  Q  Q  M  E  Y  V  C  A  S  N  S  G  R  R  I  *  V  M  S  E  M  L  L  L  H  Y  S  N  R  *  L  V  V  L  C  R  G  C  V  T  C  C  S  T  I  F  A  A  L  E  M  N  L  L  *  P  S  I  V  I  L  D  S  S  V  V  G  L  F  I  A  S  S  C  S  F  D  V  L  *  I  G  D  I  V  Y  I  L  D  P  T  R  L  A  S  L  *  T  S  G  L  F  S  Y  *  I  L  A  F  S  S  N  S  A  S  *  P  S  L  F  L  S  R  F  K  F  L  T  R  K  *  D  I  W  Y  I  *  V  L  A  I  P  *  M  P  E  W  A  G  H  H  H  N  F  V  C  I  L  F  S  T  L  N  R  I  Y  V  L  L  L  P  L  E  V  V  S  P  *  P  I  F  C  F  L  G  M  K  I  G  *  G  N  Y  *  S  V  V  S  F  S  V  P  G  I  R  I  F  P  F  S  F  P  F  A  S  P  I  M  L  V  K  R  F  I  P  S  P  K  R  K  S  S  C  L  R  R  L  V  I  T  S  Y  *  *   : A  L  L  V  G  A  V  G  R  R  L  L  S  G  C  S  P  Y  S  L  L  S  P  W  *  H  Y  S  L  Y  V  I  S  V  S  L  *  D  V  V  C  R  S  F  D  Q  T  G  S  Y  Y  C  S  N  Y  L  V  M  S  C  F  R  F  W  S  F  T  F  V  V  E  L  V  D  F  K  V  A  F  *  L  R  L  Q  L  C  S </first_frame>
            <second_frame>  F  F  S  G  L  K  G  M  P  L  L  S  F  L  L  Q  H  V  I  F  I  Y  V  P  L  P  S  L  H  Q  H  L  Q  P  G  R  A  V  F  L  R  E  L  C  L  T  I  L  T  Q  *  H  R  L  F  V  A  C  S  T  L  K  L  M  P  K  F  S  L  K  L  M  M  D  E  C  V  V  G  V  L  N  S  S  *  L  G  Y  Y  L  V  F  V  L  G  N  S  R  *  F  V  W  *  I  I  Q  F  L  V  S  K  L  L  F  R  L  V  F  V  M  V  D  Q  *  *  S  C  N  I  C  Q  D  W  L  F  *  G  E  F  N  M  N  N  G  *  L  I  D  T  L  L  V  Y  S  K  F  V  Q  S  W  L  D  Y  E  G  F  N  K  W  S  M  F  V  H  R  T  V  E  E  E  S  E  *  *  V  R  C  S  Y  Y  I  T  V  I  D  S  L  *  F  F  V  E  V  A  *  L  V  A  Q  L  S  L  L  P  W  R  *  I  C  Y  N  H  Q  L  S  F  L  I  P  V  S  W  D  C  L  L  P  L  H  V  L  L  M  F  C  K  S  E  I  L  Y  I  S  *  T  L  P  D  *  H  P  F  R  L  L  V  Y  S  V  T  R  S  *  P  F  H  P  I  L  H  P  N  H  L  Y  F  L  V  D  S  N  S  *  L  G  N  R  T  F  G  I  S  K  S  L  L  F  L  E  C  L  N  G  L  V  I  I  I  T  L  Y  V  F  S  S  Q  L  *  I  G  Y  M  S  Y  F  F  L  L  K  L  F  P  L  D  Q  F  S  V  F  W  E  *  K  L  G  R  E  I  I  S  Q  L  Y  P  F  L  F  L  V  F  V  S  S  L  L  A  F  L  L  P  V  Q  L  C  *  L  R  G  L  F  L  H  Q  K  E  N  H  L  A  *  G  D  W  *  S  L  A  T  D  K  :  R  F  *  L  E  L  L  E  E  D  C  *  A  V  V  L  P  T  L  Y  S  R  H  G  S  T  T  R  Y  M  S  F  Q  C  L  Y  K  M  L  S  V  G  H  S  T  K  L  V  V  T  T  A  V  I  I  *  L  C  H  V  L  G  F  G  V  L  L  L  L  L  N  L  L  I  L  R  W  H  F  D  Y  D  F  N  Y  V   </second_frame>
            <third_frame>   F  S  Q  A  *  K  E  C  L  S  *  V  S  Y  F  S  M  *  Y  S  F  T  S  H  C  Q  V  C  T  S  I  S  N  Q  G  E  Q  S  F  S  G  N  C  V  *  Q  Y  *  L  S  D  T  D  S  S  S  H  A  Q  P  *  N  *  C  P  N  S  P  *  N  *  *  W  M  N  V  W  W  E  F  *  I  A  V  N  *  G  I  I  *  F  S  Y  W  V  I  V  D  S  S  Y  G  E  *  F  S  F  *  L  V  S  Y  C  F  A  *  C  L  S  W  *  I  S  S  E  V  A  T  S  V  K  I  G  Y  F  K  G  N  S  I  *  T  M  A  S  *  S  I  L  S  W  Y  I  Q  S  S  C  S  H  G  *  T  M  R  G  S  T  N  G  V  C  L  C  I  E  Q  W  K  K  N  L  S  D  E  *  D  A  P  I  T  L  Q  *  *  I  A  C  S  S  L  *  R  L  R  N  L  L  L  N  Y  L  C  C  P  G  D  E  F  V  I  T  I  N  C  H  S  *  F  Q  C  R  G  I  V  Y  C  L  F  M  F  F  *  C  S  V  N  R  R  Y  C  I  Y  L  R  P  Y  Q  I  S  I  P  L  D  F  W  F  I  Q  L  L  D  L  S  L  F  I  Q  F  C  I  L  T  I  S  I  S  *  *  I  Q  I  L  D  *  E  I  G  H  L  V  Y  L  S  P  C  Y  S  L  N  A  *  M  G  W  S  S  S  *  L  C  M  Y  S  L  L  N  S  E  *  D  I  C  P  T  S  S  S  *  S  C  F  P  L  T  N  F  L  F  F  G  N  E  N  W  V  G  K  L  L  V  S  C  I  L  F  C  S  W  Y  S  Y  L  P  F  *  L  S  F  C  Q  S  N  Y  A  S  *  E  V  Y  S  F  T  K  K  K  I  I  L  P  K  E  I  G  D  H  *  L  L  I  S :   A  F  S  W  S  C  W  K  K  I  V  E  R  L  F  S  L  L  S  T  L  A  M  V  A  L  L  V  I  C  H  F  S  V  S  I  R  C  C  L  *  V  I  R  P  N  W  *  L  L  L  Q  *  L  S  S  Y  V  M  F  *  V  L  E  F  Y  F  C  C  *  T  C  *  F  *  G  G  I  L  I  T  T  S  I  M  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3398" stop="3622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLRPKRNASLEFPTSACDIHLRPIAKSAPASPTRESSLSPGIVFDNTDSVTQTLRRMLNLETNAQILLETNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3398" e_stop="4628"/>
            <exon e_start="4750" e_stop="5003"/>
            <exon e_start="5656" e_stop="5681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.415" e_score="0.992"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3398" e_stop="4628" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="4750" e_stop="5003" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.415">
            <gDNA_intron_boundary i_start="5004" i_stop="5655" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="5656" e_stop="5681" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3398" stop="4083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3424" stop="3860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3562" stop="4052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3894" stop="4550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4112" stop="4628"/>
              <exon start="4750" stop="5003"/>
              <exon start="5656" stop="5681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4761" stop="4994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG : CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTA : AATTAACACAACCACCTGATTGTCGA</gDNA_template>
            <first_frame> F  F  L  R  P  K  R  N  A  S  L  E  F  P  T  S  A  C  D  I  H  L  R  P  I  A  K  S  A  P  A  S  P  T  R  E  S  S  L  S  P  G  I  V  F  D  N  T  D  S  V  T  Q  T  L  R  R  M  L  N  L  E  T  N  A  Q  I  L  L  E  T  N  D  G  *  M  C  G  G  S  S  E  *  Q  L  T  R  V  L  F  S  F  R  I  G  *  *  *  I  V  R  M  V  N  N  S  V  F  S  *  *  V  T  V  S  L  S  V  C  H  G  R  S  V  V  K  L  Q  H  L  S  R  L  V  I  L  R  G  I  Q  Y  E  Q  W  L  V  D  R  Y  S  P  G  I  F  K  V  R  A  V  M  V  R  L  *  G  V  Q  Q  M  E  Y  V  C  A  S  N  S  G  R  R  I  *  V  M  S  E  M  L  L  L  H  Y  S  N  R  *  L  V  V  L  C  R  G  C  V  T  C  C  S  T  I  F  A  A  L  E  M  N  L  L  *  P  S  I  V  I  L  D  S  S  V  V  G  L  F  I  A  S  S  C  S  F  D  V  L  *  I  G  D  I  V  Y  I  L  D  P  T  R  L  A  S  L  *  T  S  G  L  F  S  Y  *  I  L  A  F  S  S  N  S  A  S  *  P  S  L  F  L  S  R  F  K  F  L  T  R  K  *  D  I  W  Y  I  *  V  L  A  I  P  *  M  P  E  W  A  G  H  H  H  N  F  V  C  I  L  F  S  T  L  N  R  I  Y  V  L  L  L  P  L  E  V  V  S  P  *  P  I  F  C  F  L  G  M  K  I  G  *  G  N  Y  *  S  V  V  S  F  S  V  P  G  I  R  I  F  P  F  S  F  P  F  A  S  P  I  M  L  V  K  R  F  I  P  S  P  K  R  K  S  S  C  L  R  R  L  V  I  T  S  Y  *  *   : A  L  L  V  G  A  V  G  R  R  L  L  S  G  C  S  P  Y  S  L  L  S  P  W  *  H  Y  S  L  Y  V  I  S  V  S  L  *  D  V  V  C  R  S  F  D  Q  T  G  S  Y  Y  C  S  N  Y  L  V  M  S  C  F  R  F  W  S  F  T  F  V  V  E  L  V  D  F  K  V  A  F  *  L  R  L  Q  L  :  N  *  H  N  H  L  I  V   </first_frame>
            <second_frame>  F  F  S  G  L  K  G  M  P  L  L  S  F  L  L  Q  H  V  I  F  I  Y  V  P  L  P  S  L  H  Q  H  L  Q  P  G  R  A  V  F  L  R  E  L  C  L  T  I  L  T  Q  *  H  R  L  F  V  A  C  S  T  L  K  L  M  P  K  F  S  L  K  L  M  M  D  E  C  V  V  G  V  L  N  S  S  *  L  G  Y  Y  L  V  F  V  L  G  N  S  R  *  F  V  W  *  I  I  Q  F  L  V  S  K  L  L  F  R  L  V  F  V  M  V  D  Q  *  *  S  C  N  I  C  Q  D  W  L  F  *  G  E  F  N  M  N  N  G  *  L  I  D  T  L  L  V  Y  S  K  F  V  Q  S  W  L  D  Y  E  G  F  N  K  W  S  M  F  V  H  R  T  V  E  E  E  S  E  *  *  V  R  C  S  Y  Y  I  T  V  I  D  S  L  *  F  F  V  E  V  A  *  L  V  A  Q  L  S  L  L  P  W  R  *  I  C  Y  N  H  Q  L  S  F  L  I  P  V  S  W  D  C  L  L  P  L  H  V  L  L  M  F  C  K  S  E  I  L  Y  I  S  *  T  L  P  D  *  H  P  F  R  L  L  V  Y  S  V  T  R  S  *  P  F  H  P  I  L  H  P  N  H  L  Y  F  L  V  D  S  N  S  *  L  G  N  R  T  F  G  I  S  K  S  L  L  F  L  E  C  L  N  G  L  V  I  I  I  T  L  Y  V  F  S  S  Q  L  *  I  G  Y  M  S  Y  F  F  L  L  K  L  F  P  L  D  Q  F  S  V  F  W  E  *  K  L  G  R  E  I  I  S  Q  L  Y  P  F  L  F  L  V  F  V  S  S  L  L  A  F  L  L  P  V  Q  L  C  *  L  R  G  L  F  L  H  Q  K  E  N  H  L  A  *  G  D  W  *  S  L  A  T  D  K  :  R  F  *  L  E  L  L  E  E  D  C  *  A  V  V  L  P  T  L  Y  S  R  H  G  S  T  T  R  Y  M  S  F  Q  C  L  Y  K  M  L  S  V  G  H  S  T  K  L  V  V  T  T  A  V  I  I  *  L  C  H  V  L  G  F  G  V  L  L  L  L  L  N  L  L  I  L  R  W  H  F  D  Y  D  F  N  * :   I  N  T  T  T  *  L  S  </second_frame>
            <third_frame>   F  S  Q  A  *  K  E  C  L  S  *  V  S  Y  F  S  M  *  Y  S  F  T  S  H  C  Q  V  C  T  S  I  S  N  Q  G  E  Q  S  F  S  G  N  C  V  *  Q  Y  *  L  S  D  T  D  S  S  S  H  A  Q  P  *  N  *  C  P  N  S  P  *  N  *  *  W  M  N  V  W  W  E  F  *  I  A  V  N  *  G  I  I  *  F  S  Y  W  V  I  V  D  S  S  Y  G  E  *  F  S  F  *  L  V  S  Y  C  F  A  *  C  L  S  W  *  I  S  S  E  V  A  T  S  V  K  I  G  Y  F  K  G  N  S  I  *  T  M  A  S  *  S  I  L  S  W  Y  I  Q  S  S  C  S  H  G  *  T  M  R  G  S  T  N  G  V  C  L  C  I  E  Q  W  K  K  N  L  S  D  E  *  D  A  P  I  T  L  Q  *  *  I  A  C  S  S  L  *  R  L  R  N  L  L  L  N  Y  L  C  C  P  G  D  E  F  V  I  T  I  N  C  H  S  *  F  Q  C  R  G  I  V  Y  C  L  F  M  F  F  *  C  S  V  N  R  R  Y  C  I  Y  L  R  P  Y  Q  I  S  I  P  L  D  F  W  F  I  Q  L  L  D  L  S  L  F  I  Q  F  C  I  L  T  I  S  I  S  *  *  I  Q  I  L  D  *  E  I  G  H  L  V  Y  L  S  P  C  Y  S  L  N  A  *  M  G  W  S  S  S  *  L  C  M  Y  S  L  L  N  S  E  *  D  I  C  P  T  S  S  S  *  S  C  F  P  L  T  N  F  L  F  F  G  N  E  N  W  V  G  K  L  L  V  S  C  I  L  F  C  S  W  Y  S  Y  L  P  F  *  L  S  F  C  Q  S  N  Y  A  S  *  E  V  Y  S  F  T  K  K  K  I  I  L  P  K  E  I  G  D  H  *  L  L  I  S :   A  F  S  W  S  C  W  K  K  I  V  E  R  L  F  S  L  L  S  T  L  A  M  V  A  L  L  V  I  C  H  F  S  V  S  I  R  C  C  L  *  V  I  R  P  N  W  *  L  L  L  Q  *  L  S  S  Y  V  M  F  *  V  L  E  F  Y  F  C  C  *  T  C  *  F  *  G  G  I  L  I  T  T  S  I   : K  L  T  Q  P  P  D  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3398" stop="3622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLRPKRNASLEFPTSACDIHLRPIAKSAPASPTRESSLSPGIVFDNTDSVTQTLRRMLNLETNAQILLETNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7953" PGL_stop="8306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7953" e_stop="8165"/>
            <exon e_start="8237" e_stop="8306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.967"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="7953" e_stop="8165" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8166" i_stop="8236" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="8237" e_stop="8306" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7953" stop="8165"/>
              <exon start="8237" stop="8306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTG : CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGATTAATTAAT</gDNA_template>
            <first_frame> N  C  *  K  K  *  K  W  K  V  K  S  L  L  Q  C  F  L  C  A  W  L  Y  L  Q  L  C  V  K  P  Q  K  K  S  I  R  I  A  I  T  H  V  T  M  N  A  Q  L  N  K  D  K  V  I  P  F  V  R  *  S  V  M  Q  T  A  Q  R  R  I  S  L  :  L  N  S  L  N  S  R  L  N  E  E  D  Q  R  H  N  K  S  S  R  I  N  *  </first_frame>
            <second_frame>  I  V  K  R  N  K  N  G  R  S  K  V  C  C  S  V  S  Y  V  H  G  C  I  Y  S  C  V  *  S  H  R  R  R  V  S  G  L  L  S  H  M  S  R  *  M  H  S  *  T  R  T  R  L  Y  L  L  *  D  E  V  *  C  R  L  L  K  E  G  F  R  C :   S  I  P  *  I  Q  G  L  M  R  R  T  K  D  I  I  K  A  V  G  L  I  N </second_frame>
            <third_frame>   L  L  K  E  I  K  M  E  G  Q  K  F  V  A  V  F  L  M  C  M  V  V  F  T  A  V  C  E  A  T  E  E  E  Y  Q  D  C  Y  H  T  C  H  D  E  C  T  A  K  Q  G  Q  G  Y  T  F  C  E  M  K  C  D  A  D  C  S  K  K  D  F  V   : A  Q  F  P  K  F  K  A  *  *  G  G  P  K  T  *  *  K  Q  S  D  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7955" stop="8165"/>
                    <exon start="8237" stop="8262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKEIKMEGQKFVAVFLMCMVVFTAVCEATEEEYQDCYHTCHDECTAKQGQGYTFCEMKCDADCSKKDFVAQFPKFKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9597" PGL_stop="8527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9597" e_stop="9438"/>
            <exon e_start="8716" e_stop="8527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9597" e_stop="9438" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9437" i_stop="8717" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8716" e_stop="8527" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9597" stop="9438"/>
              <exon start="8716" stop="8527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG : TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</gDNA_template>
            <first_frame> S  S  K  L  Y  I  W  C  D  Q  K  T  *  T  S  T  L  V  D  L  S  V  L  L  K  T  A  F  F  V  L  F  S  E  R  N  Y  M  A  N  I  S  T  C  S  L  L  V  A  A  V  F  L   : V  G  I  L  M  I  P  S  E  I  L  G  E  T  C  Y  Q  I  H  P  E  I  L  C  D  E  G  K  V  E  G  E  C  L  P  F  C  N  D  K  F  G  S  S  A  G  G  Q  C  I  E  Q  I  G  F  D  G  P  F  C  A  C  D   </first_frame>
            <second_frame>  H  P  N  Y  I  F  G  V  T  K  K  H  K  Q  V  L  L  *  I  Y  L  S  S  *  K  L  L  F  L  F  C  F  Q  K  E  I  I  W  Q  I  F  L  L  A  P  F  S  L  L  L  F  F  *  :  L  E  Y  *  *  S  H  R  K  Y  W  E  K  H  A  I  K  Y  T  Q  R  Y  C  V  M  K  A  K  L  K  G  N  V  Y  L  S  A  M  T  N  L  D  P  L  L  V  D  N  A  L  S  K  L  A  L  M  V  L  F  V  H  V  I  </second_frame>
            <third_frame>   I  Q  I  I  Y  L  V  *  P  K  N  I  N  K  Y  S  C  R  F  I  C  P  L  K  N  C  F  F  C  F  V  F  R  K  K  L  Y  G  K  Y  F  Y  L  L  P  S  R  C  C  C  F  S  S :   W  N  I  D  D  P  I  G  N  I  G  R  N  M  L  S  N  T  P  R  D  I  V  *  *  R  Q  S  *  R  G  M  F  T  F  L  Q  *  Q  I  W  I  L  C  W  W  T  M  H  *  A  N  W  L  *  W  S  F  L  C  M  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9558" stop="9438"/>
                    <exon start="8716" stop="8529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTLVDLSVLLKTAFFVLFSERNYMANISTCSLLVAAVFLVGILMIPSEILGETCYQIHPEILCDEGKVEGECLPFCNDKFGSSAGGQCIEQIGFDGPFCACD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16695" PGL_stop="13339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16695" e_stop="16552"/>
            <exon e_start="15725" e_stop="15663"/>
            <exon e_start="15440" e_stop="15324"/>
            <exon e_start="15240" e_stop="14962"/>
            <exon e_start="14804" e_stop="14691"/>
            <exon e_start="14399" e_stop="14327"/>
            <exon e_start="14194" e_stop="14128"/>
            <exon e_start="13597" e_stop="13339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.031" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="16695" e_stop="16552" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15725" e_stop="15663" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.031">
            <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15440" e_stop="15324" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15240" e_stop="14962" e_length="279"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14804" e_stop="14691" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14399" e_stop="14327" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14128" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="13597" e_stop="13339" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16695" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16655" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16653" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="15039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16625" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16625" stop="16552"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16621" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16608" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16601" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16599" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16596" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15386" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT : AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> K  F  I  T  S  L  K  L  L  G  T  K  F  P  N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  :  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </first_frame>
            <second_frame>  N  L  S  L  L  *  N  F  W  G  P  N  S  Q  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L :   G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </second_frame>
            <third_frame>   I  Y  H  F  S  K  T  F  G  D  Q  I  P  K  S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G   : *  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16695" stop="16552"/>
                    <exon start="15725" stop="15663"/>
                    <exon start="15440" stop="15324"/>
                    <exon start="15240" stop="14962"/>
                    <exon start="14804" stop="14691"/>
                    <exon start="14399" stop="14327"/>
                    <exon start="14194" stop="14157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFITSLKLLGTKFPNLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEARVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13591" stop="13340"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16636" e_stop="16552"/>
            <exon e_start="15746" e_stop="15663"/>
            <exon e_start="15440" e_stop="15324"/>
            <exon e_start="15240" e_stop="14962"/>
            <exon e_start="14804" e_stop="14691"/>
            <exon e_start="14399" e_stop="14327"/>
            <exon e_start="14194" e_stop="14128"/>
            <exon e_start="13597" e_stop="13339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.934" e_score="0.960"/>
          <exon-intron don_prob="0.993" acc_prob="0.031" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="16636" e_stop="16552" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.934">
            <gDNA_intron_boundary i_start="16551" i_stop="15747" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15746" e_stop="15663" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.031">
            <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15440" e_stop="15324" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15240" e_stop="14962" e_length="279"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14804" e_stop="14691" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14399" e_stop="14327" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14128" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="13597" e_stop="13339" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16636" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16636" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="15034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16632" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16628" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16626" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16626" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16626" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16583" stop="16552"/>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="15060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15746" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="15142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15386" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : TTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT : AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : V  N  W  K  F  Y  L  D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G   : *  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </first_frame>
            <second_frame>  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  L  I  G  N  F  T  *  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  :  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </second_frame>
            <third_frame>   A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  S :   *  L  E  I  L  L  R  W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L :   G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15725" stop="15663"/>
                    <exon start="15440" stop="15324"/>
                    <exon start="15240" stop="14962"/>
                    <exon start="14804" stop="14691"/>
                    <exon start="14399" stop="14327"/>
                    <exon start="14194" stop="14157"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEIKADGSDGSLVLIKQGAEARVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13591" stop="13340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16661" e_stop="16552"/>
            <exon e_start="15725" e_stop="15324"/>
            <exon e_start="15240" e_stop="14962"/>
            <exon e_start="14804" e_stop="14691"/>
            <exon e_start="14399" e_stop="14327"/>
            <exon e_start="14194" e_stop="14128"/>
            <exon e_start="13597" e_stop="13339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.900"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="16661" e_stop="16552" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="15725" e_stop="15324" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15240" e_stop="14962" e_length="279"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14804" e_stop="14691" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14399" e_stop="14327" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14128" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="13597" e_stop="13339" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16661" stop="16552"/>
              <exon start="15725" stop="15389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15472" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15386" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> N  S  Q  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L  *  V  Y  I  *  F  I  *  N  F  P  V  I  F  L  I  F  F  S  H  F  F  G  K  D  F  V  C  T  C  V  F  C  I  V  Y  E  L  I  I  I  Y  T  T  V  S  A  N  V  H  L  M  A  S  S  C  *  L  *  N  F  *  N  T  L  S  C  F  S  V  E  D  I  R  G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </first_frame>
            <second_frame>  I  P  K  S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G  C  E  F  I  F  S  S  Y  K  T  F  L  *  Y  F  *  S  F  S  L  T  F  L  G  K  I  L  C  A  H  V  S  F  V  *  F  M  S  *  *  *  F  I  L  L  F  L  P  M  F  I  *  W  Q  V  V  V  D  S  R  I  S  E  T  L  Y  L  V  S  L  L  R  I  S  E  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </second_frame>
            <third_frame>   F  P  N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  V  S  L  Y  L  V  H  I  K  L  S  C  N  I  S  D  L  F  L  S  L  F  W  E  R  F  C  V  H  M  C  L  L  Y  S  L  *  V  N  N  N  L  Y  Y  C  F  C  Q  C  S  F  D  G  K  *  L  L  T  L  E  F  L  K  H  F  I  L  F  L  C  *  G  Y  Q  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15449" stop="15324"/>
                    <exon start="15240" stop="14962"/>
                    <exon start="14804" stop="14691"/>
                    <exon start="14399" stop="14327"/>
                    <exon start="14194" stop="14157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYQRVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16659" stop="16552"/>
                    <exon start="15725" stop="15552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEAVSLYLVHIKLSCNISDLFLSLFWERFCVHMCLLYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13591" stop="13340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="17618" PGL_stop="19158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17618" e_stop="17812"/>
            <exon e_start="18585" e_stop="19158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17618" e_stop="17812" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17813" i_stop="18584" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="18585" e_stop="19158" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17618" stop="17812"/>
              <exon start="18585" stop="18867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17635" stop="17812"/>
              <exon start="18585" stop="19158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG : GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCTGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</gDNA_template>
            <first_frame> F  S  V  *  P  L  E  F  A  N  T  I  G  G  W  L  L  *  R  N  P  R  K  I  L  T  S  *  R  K  S  K  P  K  T  R  K  T  T  L  F  L  L  R  T  K  E  L  N  A  I  G  G  I  V  S  G  T  R  I  K  H  Q  P  Q  :  V  L  V  Y  L  V  M  K  R  K  V  S  S  I  F  S  V  F  P  T  R  L  L  I  T  Y  V  H  L  *  G  R  T  L  S  Q  D  L  L  Q  V  *  *  T  L  R  E  D  F  L  V  L  R  S  K  L  R  L  H  *  E  D  W  L  L  V  N  P  K  F  Q  L  G  H  H  L  G  L  G  S  P  L  C  L  R  L  P  G  D  S  L  R  H  W  K  N  V  Q  S  T  I  L  S  G  Q  N  L  V  R  W  I  *  S  S  L  S  L  N  N  H  L  V  C  L  T  V  V  E  Q  L  M  Q  L  T  S  *  *  L  F  L  L  F  K  P  Q  M  I  G  V  I  R  K  A  I  T  A  C  F  C  K  V  L  W  T  A  R  C  V  F  *  T  *  *  Q  D  G  L  G  A  *  P  L  Q  G  C  S  S  A  L  D  F  </first_frame>
            <second_frame>  F  R  C  N  H  *  S  L  L  T  Q  L  V  D  G  S  S  K  E  I  Q  E  R  F  *  Q  V  E  E  N  Q  S  Q  K  Q  E  K  Q  H  C  S  C  *  E  Q  R  N  *  M  R  L  V  G  *  F  L  A  Q  E  *  N  I  N  P  R :   F  W  C  T  *  *  *  R  G  R  F  Q  V  F  F  P  C  F  Q  Q  D  F  *  L  H  M  F  T  C  K  G  G  P  Y  L  K  T  S  F  R  S  D  K  H  *  G  K  T  S  *  C  *  E  A  S  C  D  C  I  E  K  I  G  F  W  *  I  P  S  F  S  W  G  I  I  W  G  W  A  V  H  C  V  S  G  Y  L  E  I  H  *  G  T  G  R  T  C  K  A  P  S  *  V  A  R  T  *  *  D  G  Y  N  Q  V  *  V  *  T  I  I  W  F  A  *  L  L  W  S  N  *  C  N  S  H  H  N  D  S  S  C  Y  S  N  L  R  *  L  V  *  S  G  K  Q  L  Q  H  A  F  A  R  Y  C  G  Q  R  D  A  F  F  R  H  S  D  R  M  A  W  G  H  D  H  F  K  A  V  Q  V  L  W  I  L </second_frame>
            <third_frame>   F  G  V  T  I  R  V  C  *  H  N  W  W  M  A  P  L  K  K  S  K  K  D  S  N  K  L  K  K  I  K  A  K  N  K  K  N  N  I  V  P  A  E  N  K  G  T  E  C  D  W  W  D  S  F  W  H  K  N  K  T  S  T  P   : G  S  G  V  P  S  D  E  E  E  G  F  K  Y  F  F  R  V  S  N  K  T  F  D  Y  I  C  S  L  V  R  E  D  L  I  S  R  P  P  S  G  L  I  N  I  E  G  R  L  L  S  V  E  K  Q  V  A  I  A  L  R  R  L  A  S  G  E  S  Q  V  S  V  G  A  S  F  G  V  G  Q  S  T  V  S  Q  V  T  W  R  F  I  E  A  L  E  E  R  A  K  H  H  L  K  W  P  E  P  S  K  M  D  I  I  K  S  E  F  E  Q  S  F  G  L  P  N  C  C  G  A  I  D  A  T  H  I  I  M  T  L  P  A  I  Q  T  S  D  D  W  C  D  Q  E  S  N  Y  S  M  L  L  Q  G  I  V  D  S  E  M  R  F  L  D  I  V  T  G  W  P  G  G  M  T  T  S  R  L  F  K  C  S  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17647" stop="17812"/>
                    <exon start="18585" stop="19156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNWWMAPLKKSKKDSNKLKKIKAKNKKNNIVPAENKGTECDWWDSFWHKNKTSTPGSGVPSDEEEGFKYFFRVSNKTFDYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGASFGVGQSTVSQVTWRFIEALEERAKHHLKWPEPSKMDIIKSEFEQSFGLPNCCGAIDATHIIMTLPAIQTSDDWCDQESNYSMLLQGIVDSEMRFLDIVTGWPGGMTTSRLFKCSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="23594" PGL_stop="21932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23594" e_stop="23520"/>
            <exon e_start="23209" e_stop="23093"/>
            <exon e_start="22966" e_stop="22840"/>
            <exon e_start="22618" e_stop="22332"/>
            <exon e_start="22249" e_stop="22059"/>
            <exon e_start="21949" e_stop="21932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23594" e_stop="23520" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23519" i_stop="23210" i_length="310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23209" e_stop="23093" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="23092" i_stop="22967" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22966" e_stop="22840" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22839" i_stop="22619" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22618" e_stop="22332" e_length="287"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22331" i_stop="22250" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22249" e_stop="22059" e_length="191"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22058" i_stop="21950" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21949" e_stop="21932" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23594" stop="23520"/>
              <exon start="23209" stop="23093"/>
              <exon start="22966" stop="22840"/>
              <exon start="22618" stop="22332"/>
              <exon start="22249" stop="22059"/>
              <exon start="21949" stop="21932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG : ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT : GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG : GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT : GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG : GATCTCAAGGTGGATTGA</gDNA_template>
            <first_frame> A  P  L  T  S  V  I  L  G  T  I  L  V  Y  I  T  H  A  E  K  H  G  V  A  V  :  I  G  E  L  K  K  G  I  N  P  P  S  I  M  D  L  S  F  G  S  K  Y  M  T  T  A  I  K  T  G  I  V  T  G  V  I  A  L  A  :  E  G  I  A  V  G  R  S  F  A  M  F  K  N  Y  H  I  D  G  N  K  E  M  I  A  F  G  M  M  N  I  V  G  S  C  T  S  C  Y  L  T  T   : G  P  F  S  R  S  A  V  N  F  N  A  G  C  K  T  A  V  S  N  I  V  M  A  L  A  V  M  V  T  L  L  L  L  T  P  L  F  H  F  T  P  L  V  V  L  S  S  I  I  I  A  A  M  L  G  L  I  D  Y  N  A  A  I  H  L  W  H  V  D  K  F  D  F  L  V  C  M  S  A  Y  I  G  V  V  F  G  N  I  E  I  G  L  V  M  A  :  V  G  L  S  L  L  R  V  L  L  S  V  A  R  P  R  T  L  V  L  G  N  I  P  N  S  M  I  Y  R  N  V  E  Q  Y  P  N  T  N  N  V  P  G  V  L  I  L  D  I  G  A  P  I  F  F  T  N  S  S  Y  L  R  E  R :   I  S  R  W  I   </first_frame>
            <second_frame>  R  H  *  R  L  S  Y  W  E  R  F  S  F  I  *  R  M  L  K  N  T  V  L  L  * :   L  E  S  *  R  K  G  *  I  H  H  Q  *  W  I  C  R  L  D  R  N  I  *  Q  R  L  S  K  L  A  *  S  R  V  S  L  P  L  L :   K  E  *  Q  *  V  E  V  L  Q  C  S  R  I  T  I  *  M  V  T  K  R  *  L  L  L  G  *  *  T  L  L  A  H  A  L  L  V  T  S  L  L  :  G  H  S  R  D  Q  Q  *  T  S  M  L  D  A  K  Q  Q  Y  Q  T  L  S  W  R  W  L  *  W  *  R  C  Y  C  *  R  H  C  S  T  S  L  L  S  S  C  C  H  P  L  L  L  L  P  C  S  D  S  S  T  I  M  L  P  F  I  S  G  M  S  T  N  S  T  S  S  F  A  *  V  H  T  L  V  L  S  L  A  T  L  K  L  A  *  S  W  L :   L  A  Y  R  C  *  G  Y  Y  F  L  *  Q  G  Q  G  L  *  Y  L  V  I  F  P  I  L  *  S  T  E  M  W  S  N  I  Q  I  Q  T  T  F  Q  A  F  S  Y  L  T  L  E  L  L  F  S  S  L  T  Q  A  I  *  E  R   : G  S  Q  G  G  L  </second_frame>
            <third_frame>   A  I  D  V  C  H  I  G  N  D  S  R  L  Y  N  A  C  *  K  T  R  C  C  C   : D  W  R  A  E  E  R  D  K  S  T  I  N  N  G  S  V  V  W  I  E  I  Y  D  N  G  Y  Q  N  W  H  S  H  G  C  H  C  P  C   : *  R  N  S  S  R  S  K  F  C  N  V  Q  E  L  P  Y  R  W  *  Q  R  D  D  C  F  W  D  D  E  H  C  W  L  M  H  F  L  L  P  H  Y  W :   A  I  L  A  I  S  S  E  L  Q  C  W  M  Q  N  S  S  I  K  H  C  H  G  V  G  C  D  G  D  V  A  I  A  N  A  I  V  P  L  H  S  S  R  R  V  V  I  H  Y  Y  C  C  H  A  R  T  H  R  L  *  C  C  H  S  S  L  A  C  R  Q  I  R  L  P  R  L  H  E  C  I  H  W  C  C  L  W  Q  H  *  N  W  L  S  H  G   : C  W  L  I  V  A  K  G  I  T  F  C  S  K  A  K  D  F  S  T  W  *  Y  S  Q  F  Y  D  L  Q  K  C  G  A  I  S  K  Y  K  Q  R  S  R  R  S  H  T  *  H  W  S  S  Y  F  L  H  *  L  K  L  F  K  R  E  :  D  L  K  V  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23594" stop="23520"/>
                    <exon start="23209" stop="23093"/>
                    <exon start="22966" stop="22840"/>
                    <exon start="22618" stop="22332"/>
                    <exon start="22249" stop="22059"/>
                    <exon start="21949" stop="21934"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLTSVILGTILVYITHAEKHGVAVIGELKKGINPPSIMDLSFGSKYMTTAIKTGIVTGVIALAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMALAVMVTLLLLTPLFHFTPLVVLSSIIIAAMLGLIDYNAAIHLWHVDKFDFLVCMSAYIGVVFGNIEIGLVMAVGLSLLRVLLSVARPRTLVLGNIPNSMIYRNVEQYPNTNNVPGVLILDIGAPIFFTNSSYLRERISRWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36833" PGL_stop="35394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36833" e_stop="36563"/>
            <exon e_start="36483" e_stop="36370"/>
            <exon e_start="36300" e_stop="36143"/>
            <exon e_start="36065" e_stop="35394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36833" e_stop="36563" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36483" e_stop="36370" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36300" e_stop="36143" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="36065" e_stop="35394" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36833" stop="36563"/>
              <exon start="36483" stop="36370"/>
              <exon start="36300" stop="36143"/>
              <exon start="36065" stop="35394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36818" stop="36563"/>
              <exon start="36483" stop="36370"/>
              <exon start="36300" stop="36143"/>
              <exon start="36065" stop="35985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36817" stop="36563"/>
              <exon start="36483" stop="36370"/>
              <exon start="36300" stop="36143"/>
              <exon start="36065" stop="36014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36612" stop="36563"/>
              <exon start="36483" stop="36370"/>
              <exon start="36300" stop="36143"/>
              <exon start="36065" stop="35767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA : CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG : GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG : TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</gDNA_template>
            <first_frame> Y  C  K  M  W  Q  Q  T  W  N  T  P  Y  R  K  D  D  V  E  G  G  A  R  P  L  Y  P  A  M  L  E  N  P  Q  L  R  W  G  F  I  R  K  V  Y  S  I  L  S  L  Q  L  L  I  T  I  A  V  G  A  V  V  V  T  V  H  P  I  A  H  F  F  V  S  T  G  A  G  L  A  L  Y  I  L  L  I  I  A  P  F  I   : T  L  S  P  L  Y  Y  Y  H  Q  K  H  P  V  N  F  L  L  L  G  L  F  T  V  T  L  A  F  A  V  G  L  T  C  A  F  T  S   : G  K  V  I  L  E  S  V  I  L  T  A  A  V  V  L  S  L  T  I  Y  T  F  W  A  A  R  R  G  H  D  F  N  F  L  G  P  F  L  F  G  A  L  M  V  L  M  L  F  A  F  I  Q  :  L  L  F  P  L  G  R  L  S  V  M  I  Y  G  C  L  A  S  I  L  F  C  A  Y  I  I  Y  D  T  D  S  L  I  K  R  Y  T  Y  D  E  Y  I  W  A  A  V  G  L  Y  L  D  V  I  N  L  F  L  S  I  L  T  I  F  R  A  A  E  *  F  P  *  Q  I  N  N  K  N  V  T  F  A  L  *  R  T  L  F  I  Y  C  I  N  Q  *  F  F  L  L  R  N  S  L  L  V  F  V  R  L  M  D  M  *  V  T  K  S  *  *  L  K  Y  Y  I  V  *  R  G  Y  I  C  K  T  F  A  L  W  G  K  V  E  I  Y  S  S  R  K  K  E  V  *  V  N  Q  P  Y  F  S  A  *  I  Q  I  W  L  L  F  W  Q  Q  F  Y  L  K  Q  N  S  Y  W  A  L  S  L  M  S  W  K  V  R  S  W  A  S  T  S  R  C  T  W  E  K  S  Q  S  L  W  V  Y  Y  S  S  T  S  Y  I  D  R  L  R  M  N  V  F  F  E </first_frame>
            <second_frame>  I  V  R  C  G  S  R  R  G  I  R  L  T  G  K  M  T  W  K  A  E  Q  G  R  C  I  R  R  C  W  R  I  H  N  S  V  G  V  L  F  G  K  F  T  Q  F  C  L  Y  S  C  L  *  Q  L  Q  W  A  L  L  L  L  R  F  T  Q  L  H  I  F  L  C  Q  L  G  L  D  *  L  S  I  F  F  L  S  S  L  P  S  S  :  H  *  A  R  C  I  T  I  T  R  N  I  R  *  I  S  C  F  L  G  C  L  Q  L  L  W  P  S  L  *  D  *  L  V  P  S  P  V  :  G  K  *  Y  W  S  P  S  Y  *  P  Q  Q  L  C  L  V  *  P  Y  T  H  F  G  Q  Q  G  E  A  T  I  L  I  S  L  D  H  S  Y  L  V  P  L  W  F  S  C  C  L  P  L  F  S :   Y  C  F  L  W  V  G  S  L  *  *  S  M  A  V  *  R  P  F  C  S  A  H  I  *  F  M  I  R  I  V  *  S  S  A  T  L  T  M  S  T  S  G  L  L  S  D  C  I  W  T  L  S  I  Y  S  Y  L  Y  *  L  F  L  E  L  L  N  S  F  L  D  K  *  I  T  K  M  L  H  L  L  Y  K  E  H  C  L  S  I  V  *  I  N  N  F  F  Y  Y  E  T  R  C  *  Y  L  *  G  *  W  I  C  E  *  P  K  V  D  S  *  N  I  I  L  Y  K  G  V  I  S  A  K  H  L  P  F  G  A  K  L  K  Y  I  V  A  A  K  K  K  F  E  *  I  S  P  T  F  R  P  K  S  K  F  G  C  C  F  G  N  N  F  T  *  S  K  T  H  I  G  L  C  H  S  C  L  G  K  S  D  L  G  L  Q  L  A  G  V  L  G  K  N  P  K  V  C  G  C  T  I  V  R  L  H  I  *  T  D  *  E  *  T  F  S  L   </second_frame>
            <third_frame>   L  *  D  V  A  A  D  V  E  Y  A  L  P  E  R  *  R  G  R  R  S  K  A  V  V  S  G  D  V  G  E  S  T  T  P  L  G  F  Y  S  E  S  L  L  N  F  V  S  T  V  A  Y  N  N  C  S  G  R  C  C  C  Y  G  S  P  N  C  T  F  F  C  V  N  W  G  W  I  S  S  L  Y  S  S  Y  H  R  S  L  H  H :   I  E  P  V  V  L  L  S  P  E  T  S  G  E  F  L  A  S  W  V  V  Y  S  Y  S  G  L  R  C  R  I  N  L  C  L  H  Q  W :   E  S  N  I  G  V  R  H  I  N  R  S  S  C  A  *  F  D  H  I  H  I  L  G  S  K  E  R  P  R  F  *  F  P  W  T  I  L  I  W  C  P  Y  G  S  H  V  V  C  L  Y  S   : V  T  V  S  S  G  *  A  L  C  D  D  L  W  L  F  S  V  H  F  V  L  R  I  Y  N  L  *  Y  G  *  F  N  Q  A  L  H  L  R  *  V  H  L  G  C  C  R  T  V  S  G  R  Y  Q  S  I  L  I  Y  I  D  Y  F  *  S  C  *  I  V  S  L  T  N  K  *  Q  K  C  Y  I  C  S  I  K  N  I  V  Y  L  L  Y  K  S  I  I  F  F  I  T  K  L  V  V  S  I  C  K  V  D  G  Y  V  S  D  Q  K  L  I  A  E  I  L  Y  C  I  K  G  L  Y  L  Q  N  I  C  P  L  G  Q  S  *  N  I  *  *  P  Q  K  R  S  L  S  E  S  A  L  L  F  G  L  N  P  N  L  V  A  V  L  A  T  I  L  L  E  A  K  L  I  L  G  F  V  T  H  V  L  E  S  Q  I  L  G  F  N  *  Q  V  Y  L  G  K  I  P  K  F  V  G  V  L  *  F  D  F  I  Y  R  Q  I  E  N  E  R  F  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36833" stop="36563"/>
                    <exon start="36483" stop="36370"/>
                    <exon start="36300" stop="36143"/>
                    <exon start="36065" stop="35862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKMWQQTWNTPYRKDDVEGGARPLYPAMLENPQLRWGFIRKVYSILSLQLLITIAVGAVVVTVHPIAHFFVSTGAGLALYILLIIAPFITLSPLYYYHQKHPVNFLLLGLFTVTLAFAVGLTCAFTSGKVILESVILTAAVVLSLTIYTFWAARRGHDFNFLGPFLFGALMVLMLFAFIQLLFPLGRLSVMIYGCLASILFCAYIIYDTDSLIKRYTYDEYIWAAVGLYLDVINLFLSILTIFRAAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35588" stop="35394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLLFWQQFYLKQNSYWALSLMSWKVRSWASTSRCTWEKSQSLWVYYSSTSYIDRLRMNVFFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35841" stop="35647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKCYICSIKNIVYLLYKSIIFFITKLVVSICKVDGYVSDQKLIAEILYCIKGLYLQNICPLGQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42915" PGL_stop="43562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42915" e_stop="43562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="42915" e_stop="43562" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42915" stop="43562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42915" stop="43486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAACTTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCTCCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</gDNA_template>
            <first_frame> N  N  F  I  S  *  L  G  Y  L  F  K  R  S  N  W  D  L  F  T  K  *  L  C  K  W  G  *  S  *  L  P  T  P  H  Y  T  Y  R  K  W  S  Y  T  R  Q  H  S  D  E  S  H  L  F  *  W  S  Q  *  Q  R  *  C  C  L  Q  P  P  Y  F  S  G  H  N  T  F  K  C  S  R  *  L  F  F  S  L  C  F  F  N  E  S  V  H  D  V  G  N  C  Y  *  L  K  T  F  Q  H  L  R  N  *  *  T  L  L  L  K  N  *  I  I  I  V  F  N  K  *  P  D  *  S  Q  T  L  C  F  N  L  *  V  C  S  F  *  A  P  K  *  F  L  H  C  I  I  R  *  H  Q  I  P  A  S  L  E  P  T  I  L  P  G  T  H  S  *  G  A  M  V  H  K  L  S  D  V  L  *  V  I  K  *  *  I  Q  Q  *  I  H  C  V  Y  F  P  L  F  A  Y  P  I  A  Y  L  F  L  F  F  A </first_frame>
            <second_frame>  T  T  S  S  A  N  L  D  I  Y  L  S  D  R  I  G  T  C  S  P  S  D  Y  A  S  G  A  D  L  S  F  P  P  H  I  T  P  T  G  S  G  P  I  Q  D  N  I  Q  M  N  P  T  F  S  S  G  L  N  D  R  G  D  V  V  Y  N  L  L  I  L  A  V  T  I  L  S  N  V  P  D  N  F  F  F  P  Y  A  S  L  M  S  L  C  M  M  *  G  T  V  I  D  *  K  L  F  N  I  *  E  I  S  E  H  C  F  S  K  I  K  *  S  L  F  S  I  S  N  Q  I  N  H  K  L  C  V  L  T  F  E  S  V  L  S  K  L  L  N  D  S  C  I  V  L  *  D  S  I  R  F  L  R  H  W  N  Q  P  S  S  L  G  H  I  H  K  V  P  W  F  I  N  *  V  M  Y  Y  K  *  L  N  S  E  Y  S  S  E  S  I  A  F  I  S  P  C  L  L  I  L  *  H  I  F  F  C  F  S   </second_frame>
            <third_frame>   Q  L  H  Q  L  T  W  I  S  I  *  A  I  E  L  G  L  V  H  Q  V  T  M  Q  V  G  L  I  L  A  S  H  P  T  L  H  L  Q  E  V  V  L  Y  K  T  T  F  R  *  I  P  P  F  L  V  V  S  M  T  E  V  M  L  F  T  T  S  L  F  *  R  S  Q  Y  F  Q  M  F  Q  I  T  F  F  F  L  M  L  L  *  *  V  C  A  *  C  R  E  L  L  L  T  K  N  F  S  T  S  K  K  L  V  N  I  A  S  Q  K  L  N  N  H  C  F  Q  *  V  T  R  L  I  T  N  F  V  F  *  P  L  S  L  F  F  L  S  S  *  M  I  L  A  L  Y  Y  K  I  A  S  D  S  C  V  T  G  T  N  H  P  P  W  D  T  F  I  R  C  H  G  S  *  I  E  *  C  I  I  S  D  *  I  V  N  T  A  V  N  P  L  R  L  F  P  L  V  C  L  S  Y  S  I  S  F  F  V  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42916" stop="43203"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSSANLDIYLSDRIGTCSPSDYASGADLSFPPHITPTGSGPIQDNIQMNPTFSSGLNDRGDVVYNLLILAVTILSNVPDNFFFPYASLMSLCMM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43837" PGL_stop="44501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43837" e_stop="44501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43837" e_stop="44501" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43837" stop="44501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</gDNA_template>
            <first_frame> S  E  T  E  V  G  D  A  H  Q  I  S  A  Y  V  L  K  C  S  E  A  T  S  C  C  S  V  R  I  V  A  *  S  V  M  M  V  A  L  G  T  I  S  V  K  L  P  Y  L  S  R  F  V  C  N  V  N  E  D  R  I  S  E  K  *  W  S  S  H  E  T  F  F  A  F  R  I  T  A  S  R  P  L  Q  Y  *  F  *  A  A  A  F  P  C  *  W  N  H  S  Q  *  S  C  L  L  G  I  I  R  P  I  L  L  L  G  A  G  D  K  P  A  E  L  H  D  I  E  C  E  W  V  M  L  S  D  D  P  *  R  L  K  *  A  F  L  F  R  C  L  I  E  I  T  *  L  K  A  *  F  L  L  Q  V  C  H  F  S  Y  L  L  T  R  T  A  L  Q  D  T  A  H  A  K  K  Y  W  E  R  I  V  F  S  S  T  Y  V  S  F  P  L  Y  N  T  Y  L  S  P  V  K  S  E  V  Q  D  H  D  S  T  C  M  I  I   </first_frame>
            <second_frame>  R  K  L  R  L  G  M  R  T  R  F  L  L  M  S  *  N  V  R  R  P  H  H  V  V  V  Y  G  *  L  H  E  V  *  *  W  *  H  L  G  Q  Y  L  *  N  C  L  I  Y  L  G  L  S  V  M  *  M  K  I  E  L  V  R  N  S  G  Q  V  M  K  P  F  L  L  F  V  *  Q  L  V  A  L  F  N  I  D  F  R  L  Q  H  F  P  V  D  G  T  I  L  N  D  L  A  Y  L  E  L  Y  V  Q  F  C  C  W  E  L  E  T  N  Q  R  N  C  M  T  *  N  V  N  G  S  C  S  L  M  I  L  D  V  *  N  K  L  S  C  S  V  V  *  S  K  *  R  D  *  R  L  N  F  F  F  K  F  V  I  S  A  I  Y  *  L  G  L  H  C  R  I  L  H  M  R  R  S  I  G  K  E  L  S  S  P  L  L  M  F  L  S  L  Y  I  I  P  T  F  L  L  *  N  L  K  F  K  I  M  I  A  H  V  *  L  S  </second_frame>
            <third_frame>   G  N  *  G  W  G  C  A  P  D  F  C  L  C  L  E  M  F  G  G  H  I  M  L  *  C  T  D  S  C  M  K  C  D  D  G  S  T  W  D  N  I  C  E  T  A  L  S  I  *  V  C  L  *  C  K  *  R  *  N  *  *  E  I  V  V  K  S  *  N  L  F  C  F  S  Y  N  S  *  S  P  S  S  I  L  I  L  G  C  S  I  S  L  L  M  E  P  F  S  M  I  L  L  T  W  N  Y  T  S  N  F  V  A  G  S  W  R  Q  T  S  G  T  A  *  H  R  M  *  M  G  H  A  L  *  *  S  L  T  F  K  I  S  F  P  V  P  L  F  D  R  N  N  V  I  E  G  L  I  S  S  S  S  L  S  F  Q  L  F  I  D  *  D  C  I  A  G  Y  C  T  C  E  E  V  L  G  K  N  C  L  L  L  Y  L  C  F  F  P  F  I  *  Y  L  P  F  S  C  K  I  *  S  S  R  S  *  *  H  M  Y  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0028D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53342" PGL_stop="50641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53342" e_stop="53306"/>
            <exon e_start="53095" e_stop="52963"/>
            <exon e_start="51460" e_stop="50908"/>
            <exon e_start="50652" e_stop="50641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.486" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.444" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53342" e_stop="53306" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.486" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53095" e_stop="52963" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51460" e_stop="50908" e_length="553"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.444">
            <gDNA_intron_boundary i_start="50907" i_stop="50653" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="50652" e_stop="50641" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53342" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53329" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53326" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="51068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53326" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="51125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53325" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50908"/>
              <exon start="50652" stop="50641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50908"/>
              <exon start="50652" stop="50642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53313" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53089" stop="52963"/>
              <exon start="51460" stop="51004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53062" stop="52963"/>
              <exon start="51460" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="52963"/>
              <exon start="51460" stop="51197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51460" stop="50991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTGCGTCTCTGGGAAAATTTAGCAGAAAATCAG : TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG : ATCAAAGAAAAT</gDNA_template>
            <first_frame> F  I  A  S  L  G  K  F  S  R  K  S   : V  F  K  *  G  K  W  Q  E  K  E  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K  *  R  E  S  L  P  G  T  C  N  W  P  F  V  E  M  R  N  L  T  P  L  S  K  V  L  L  L  V  V  V  S  S  L  T  F  T  S  P  S  *  T  K  P  P  R  S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  :  I  K  E  N </first_frame>
            <second_frame>  L  L  R  L  W  E  N  L  A  E  N  Q  :  F  S  N  K  E  N  G  R  K  R  R  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *  S  E  E  N  H  S  Q  A  L  A  T  G  H  S  W  R  *  G  T  *  H  P  Y  Q  R  Y  Y  C  W  W  W  C  H  P  S  H  S  Q  V  P  H  K  Q  N  H  Q  G  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R :   S  K  K   </second_frame>
            <third_frame>   Y  C  V  S  G  K  I  *  Q  K  I  S :   F  Q  I  R  K  M  A  G  K  G  G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *   : D  Q  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53316" stop="53306"/>
                    <exon start="53095" stop="52963"/>
                    <exon start="51460" stop="51164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKISFQIRKMAGKGGKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53064" e_stop="52963"/>
            <exon e_start="51460" e_stop="51308"/>
            <exon e_start="51167" e_stop="50852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53064" e_stop="52963" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51460" e_stop="51308" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51307" i_stop="51168" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51167" e_stop="50852" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53064" stop="52963"/>
              <exon start="51460" stop="51308"/>
              <exon start="51167" stop="50852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53063" stop="52963"/>
              <exon start="51460" stop="51308"/>
              <exon start="51167" stop="50852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53062" stop="52963"/>
              <exon start="51460" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA : GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</gDNA_template>
            <first_frame> G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  :  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R  S  S  V  L  L  S  R  N  *  E  C  D  V  G  *  S  L  S  </first_frame>
            <second_frame>  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K :   *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *  G  H  L  Y  C  Y  Q  G  I  K  N  V  M  *  D  D  L  Y  L </second_frame>
            <third_frame>   E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *   : S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  V  I  C  I  V  I  K  E  L  R  M  *  C  R  M  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53064" stop="52963"/>
                    <exon start="51460" stop="51308"/>
                    <exon start="51167" stop="51132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKFSCVILDVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53062" stop="52963"/>
                    <exon start="51460" stop="51339"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERASSGEDNSCSGCQQGERQEKTNFSFISCGFAVSSGKNSPSAQDQNLCPWQGWSNSSCLLCCNSGVPDCRGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62923" PGL_stop="62640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62923" e_stop="62772"/>
            <exon e_start="62695" e_stop="62640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62923" e_stop="62772" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.871">
            <gDNA_intron_boundary i_start="62771" i_stop="62696" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62695" e_stop="62640" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62923" stop="62772"/>
              <exon start="62695" stop="62640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG : ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</gDNA_template>
            <first_frame> G  S  I  L  S  K  E  H  F  R  S  E  L  C  *  S  E  H  G  W  C  G  L  F  K  E  N  *  S  *  Y  L  Q  K  L  S  T  I  T  Q  G  F  R  E  H  V  Q  V  L  Y  * :   C  I  F  R  N  R  W  I  Q  R  M  *  L  Y  T  N  L  R  </first_frame>
            <second_frame>  V  R  S  Y  R  K  N  I  L  E  A  S  Y  V  K  V  S  M  D  G  A  A  Y  L  R  K  I  D  L  N  T  Y  K  S  Y  P  Q  L  L  K  A  L  E  N  M  F  K  C  S  I   : D  V  Y  S  E  T  D  G  Y  N  G  C  N  Y  I  P  T  Y  E </second_frame>
            <third_frame>   F  D  P  I  E  R  T  F  *  K  R  A  M  L  K  *  A  W  M  V  R  L  I  *  G  K  L  I  L  I  L  T  K  V  I  H  N  Y  S  R  L  *  R  T  C  S  S  A  L  L  :  M  Y  I  Q  K  Q  M  D  T  T  D  V  I  I  Y  Q  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62922" stop="62772"/>
                    <exon start="62695" stop="62640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSYRKNILEASYVKVSMDGAAYLRKIDLNTYKSYPQLLKALENMFKCSIDVYSETDGYNGCNYIPTYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="65485" PGL_stop="66246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65485" e_stop="66246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="65485" e_stop="66246" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65485" stop="66087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65485" stop="66087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65486" stop="66246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</gDNA_template>
            <first_frame> H  I  D  S  S  T  S  S  I  E  K  S  F  F  L  I  H  S  T  K  K  L  E  T  I  Q  W  Q  T  T  K  D  A  C  N  L  L  T  G  *  K  C  T  H  S  I  H  F  D  F  H  L  K  K  R  K  V  D  I  L  L  V  K  I  *  P  *  V  S  K  W  Q  V  *  F  I  I  V  G  E  Y  S  W  S  S  F  F  S  F  S  S  Y  L  Y  *  Y  Y  Q  N  L  F  Y  N  L  F  S  N  Y  G  S  Q  *  Y  T  N  N  A  T  G  T  G  L  V  Y  K  H  S  T  T  A  L  R  N  P  L  S  L  L  V  I  W  L  Q  N  *  *  N  M  S  V  F  E  C  M  Y  I  R  I  R  E  R  T  N  F  T  L  *  V  Y  Y  L  W  A  E  *  I  R  N  L  D  P  F  R  A  I  R  K  T  F  A  M  R  M  I  F  H  T  H  K  I  C  A  Y  L  H  G  T  K  K  K  K  Q  I  T  S  G  N  S  L  S  T  P  Q  R  Q  G  Y  D  L  R  T  C  Y  H  T  *  I  P  L  V  R  L  H  *  H  V  V  R  *  Q  I  T  C  S </first_frame>
            <second_frame>  I  *  I  H  L  L  P  Q  L  K  N  L  S  F  *  F  I  P  L  K  N  *  K  P  S  N  G  K  Q  L  K  M  H  A  T  F  *  Q  D  E  N  A  L  T  L  F  I  L  I  S  I  *  R  K  E  K  L  T  F  F  W  S  K  Y  D  H  K  F  Q  N  G  K  F  S  L  L  L  *  G  N  T  V  G  A  V  S  L  A  F  L  L  T  Y  I  D  I  T  R  I  C  F  I  I  Y  S  L  I  M  A  H  N  N  T  L  T  M  R  Q  A  L  D  *  F  T  S  T  V  Q  Q  R  F  E  I  L  L  V  F  L  S  F  G  C  K  I  S  K  T  C  R  S  L  N  V  C  I  L  E  L  E  R  E  L  I  S  L  Y  E  F  I  T  C  G  L  N  K  S  G  T  L  I  L  L  E  P  S  G  R  R  L  Q  *  E  *  S  S  T  P  I  K  S  A  H  T  F  M  E  P  K  K  K  N  K  L  L  P  E  T  A  F  L  P  H  K  G  R  D  M  I  C  V  H  V  T  I  P  R  S  H  L  *  D  Y  T  S  M  L  L  D  N  K  L  L  V   </second_frame>
            <third_frame>   Y  R  F  I  Y  F  L  N  *  K  I  F  L  F  N  S  F  H  *  K  I  R  N  H  P  M  A  N  N  *  R  C  M  Q  P  S  N  R  M  K  M  H  S  L  Y  S  F  *  F  P  S  E  E  K  K  S  *  H  S  F  G  Q  N  M  T  I  S  F  K  M  A  S  L  V  Y  Y  C  R  G  I  Q  L  E  Q  F  L  *  L  F  F  L  P  I  L  I  L  P  E  F  V  L  *  F  I  L  *  L  W  L  T  I  I  H  *  Q  C  D  R  H  W  T  S  L  Q  A  Q  Y  N  S  A  S  K  S  S  *  S  S  C  H  L  A  A  K  L  V  K  H  V  G  L  *  M  Y  V  Y  *  N  *  R  E  N  *  F  H  F  M  S  L  L  P  V  G  *  I  N  P  E  P  *  S  F  *  S  H  Q  E  D  V  C  N  E  N  D  L  P  H  P  *  N  L  R  I  P  S  W  N  Q  K  K  K  T  N  Y  F  R  K  Q  P  F  Y  P  T  K  A  G  I  *  S  A  Y  M  L  P  Y  L  D  P  T  C  E  I  T  L  A  C  C  *  I  T  N  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65852" stop="66058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSTVQQRFEILLVFLSFGCKISKTCRSLNVCILELERELISLYEFITCGLNKSGTLILLEPSGRRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="70499" PGL_stop="68264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70499" e_stop="69676"/>
            <exon e_start="69426" e_stop="69325"/>
            <exon e_start="68580" e_stop="68436"/>
            <exon e_start="68356" e_stop="68264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.966" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70499" e_stop="69676" e_length="824"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.982">
            <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69426" e_stop="69325" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.900">
            <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68580" e_stop="68436" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.929">
            <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68356" e_stop="68264" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70499" stop="69822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="69676"/>
              <exon start="69426" stop="69325"/>
              <exon start="68580" stop="68436"/>
              <exon start="68356" stop="68320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="69676"/>
              <exon start="69426" stop="69325"/>
              <exon start="68580" stop="68436"/>
              <exon start="68356" stop="68336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69856" stop="69676"/>
              <exon start="69426" stop="69325"/>
              <exon start="68580" stop="68436"/>
              <exon start="68356" stop="68264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG : TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG : GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG : GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</gDNA_template>
            <first_frame> Q  T  T  E  N  S  R  A  I  L  P  P  F  I  F  T  H  L  L  P  Q  F  Y  L  H  I  S  L  S  P  P  A  S  F  R  L  T  M  A  D  P  K  F  I  Y  I  *  S  S  K  K  F  *  S  E  E  L  T  V  Q  F  F  L  D  P  P  I  D  G  E  I  E  M  Q  G  R  Q  P  H  P  H  T  T  T  P  I  S  E  V  I  L  P  K  R  G  K  K  R  G  S  Y  S  C  G  R  C  G  V  P  K  K  G  H  V  C  N  F  P  K  N  L  N  P  I  D  N  P  S  P  N  P  N  S  S  L  L  A  S  P  P  S  V  V  R  P  Q  P  P  P  P  L  P  Q  R  H  V  L  P  Q  L  R  R  A  L  S  F  D  D  V  D  V  N  D  S  P  G  S  D  D  E  G  D  F  S  D  L  D  N  E  S  D  R  V  G  S  G  S  G  I  G  T  L  P  S  S  C  L  W  E  V  F  K  R  L  P  P  P  A  L  L  S  S  A  R  V  C  K  G  W  L  E  S  S  R  R  I  W  K  S  A  V  E  L  R  L  R  V  P  V  N  A  Q  I  G  L  V  G  S  V  L  K  K  C  P  G  L  V  K  L  S  L  R  M  E  S :   D  I  D  A  T  M  L  A  C  I  A  F  S  C  P  K  L  D  S  M  E  I  L  M  C  N  T  S  V  N  R  I  T  G :   D  E  L  G  R  F  V  A  E  K  R  S  L  T  N  L  K  M  E  G  C  S  N  L  G  G  F  T  L  C  S  T  S  L  S  T  L  S  L  S  D  L  Y  C  H  A  K  M  :  V  F  N  C  P  N  L  K  D  V  S  L  D  F  S  H  Q  E  N  D  T  T  D  L  T  L  M  V  D  G  L </first_frame>
            <second_frame>  K  L  Q  K  T  P  A  P  F  S  H  L  L  F  L  L  I  S  Y  L  N  F  T  Y  T  F  H  C  R  R  R  Q  A  S  D  *  Q  W  R  I  L  N  L  Y  I  Y  K  A  L  K  N  S  D  R  K  N  S  L  Y  N  F  F  W  I  R  Q  L  T  A  K  S  R  C  R  A  V  N  P  I  P  T  P  P  L  L  Y  P  K  L  S  F  Q  S  V  A  R  S  G  V  A  T  V  V  A  D  A  V  Y  P  K  K  A  M  F  A  I  F  L  R  T  L  I  R  L  I  I  P  V  P  I  P  I  R  H  S  *  L  P  H  P  L  L  F  V  L  S  R  H  L  P  C  R  N  A  M  Y  S  H  S  S  G  E  H  F  H  L  M  T  L  M  L  M  I  H  L  D  L  M  T  R  G  I  S  P  I  W  I  T  N  R  I  E  L  G  P  D  R  G  *  G  R  C  L  R  V  V  Y  G  K  C  L  R  D  Y  R  L  R  R  C  F  H  R  R  G  F  V  R  G  G  W  K  V  L  E  G  S  G  S  L  L  W  S  L  D  L  G  F  P  *  M  P  R  L  D  L  S  G  R  C  *  R  N  V  Q  G  L  L  S  F  L  L  E  W  K   : V  T  L  M  L  P  C  W  P  A  L  L  F  P  V  L  N  W  I  R  W  R  Y  L  C  V  I  P  Q  S  I  G  S  L   : G  M  N  W  V  V  L  L  L  R  K  D  L  L  L  I  S  R  W  K  V  A  L  I  L  G  V  S  L  F  A  Q  P  V  F  Q  L  F  R  F  Q  I  S  I  V  M  L  R  W :   S  S  T  A  P  T  *  R  M  F  P  W  I  F  L  T  K  K  M  T  P  P  I  L  L  S  W  S  M  V   </second_frame>
            <third_frame>   N  Y  R  K  L  P  R  H  S  P  T  F  Y  F  Y  S  S  L  T  S  I  L  P  T  H  F  T  V  A  A  G  K  L  P  I  N  N  G  G  S  *  I  Y  I  Y  I  K  L  *  K  I  L  I  G  R  T  H  C  T  I  F  F  G  S  A  N  *  R  R  N  R  D  A  G  P  S  T  P  S  P  H  H  H  S  Y  I  R  S  Y  P  S  K  A  W  Q  E  A  G  *  L  Q  L  W  P  M  R  C  T  Q  K  R  P  C  L  Q  F  S  *  E  P  *  S  D  *  *  S  Q  S  Q  S  Q  F  V  T  L  S  F  P  T  L  C  C  S  S  S  A  A  T  S  P  A  A  T  P  C  T  P  T  A  P  A  S  T  F  I  *  *  R  *  C  *  *  F  T  W  I  *  *  R  G  G  F  L  R  S  G  *  R  I  G  S  S  W  V  R  I  G  D  R  D  V  A  F  E  L  F  M  G  S  V  *  E  I  T  A  S  G  V  A  F  I  G  E  G  L  *  G  V  V  G  K  F  *  K  D  L  E  V  C  C  G  A  *  T  *  G  S  R  K  C  P  D  W  T  C  R  V  G  V  K  E  M  S  R  A  C  *  A  F  S  *  N  G  K  :  *  H  *  C  Y  H  V  G  L  H  C  F  F  L  S  *  T  G  F  D  G  D  T  Y  V  *  Y  L  S  Q  S  D  H  W  :  G  *  I  G  S  F  C  C  *  E  K  I  S  Y  *  S  Q  D  G  R  L  L  *  S  W  G  F  H  S  L  L  N  Q  S  F  N  S  F  A  F  R  S  L  L  S  C  *  D   : G  L  Q  L  P  Q  L  E  G  C  F  P  G  F  F  S  P  R  K  *  H  H  R  S  Y  S  H  G  R  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70340" stop="69676"/>
                    <exon start="69426" stop="69325"/>
                    <exon start="68580" stop="68436"/>
                    <exon start="68356" stop="68264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEELTVQFFLDPPIDGEIEMQGRQPHPHTTTPISEVILPKRGKKRGSYSCGRCGVPKKGHVCNFPKNLNPIDNPSPNPNSSLLASPPSVVRPQPPPPLPQRHVLPQLRRALSFDDVDVNDSPGSDDEGDFSDLDNESDRVGSGSGIGTLPSSCLWEVFKRLPPPALLSSARVCKGWLESSRRIWKSAVELRLRVPVNAQIGLVGSVLKKCPGLVKLSLRMESDIDATMLACIAFSCPKLDSMEILMCNTSVNRITGDELGRFVAEKRSLTNLKMEGCSNLGGFTLCSTSLSTLSLSDLYCHAKMVFNCPNLKDVSLDFSHQENDTTDLTLMVDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73285" PGL_stop="72283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73285" e_stop="73111"/>
            <exon e_start="72748" e_stop="72283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73285" e_stop="73111" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="72748" e_stop="72283" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73285" stop="73111"/>
              <exon start="72748" stop="72340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73285" stop="73111"/>
              <exon start="72748" stop="72340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73285" stop="73111"/>
              <exon start="72748" stop="72416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73266" stop="73111"/>
              <exon start="72748" stop="72400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73265" stop="73111"/>
              <exon start="72748" stop="72417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="73111"/>
              <exon start="72748" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="73111"/>
              <exon start="72748" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73229" stop="73111"/>
              <exon start="72748" stop="72404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73221" stop="73111"/>
              <exon start="72748" stop="72333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73216" stop="73111"/>
              <exon start="72748" stop="72320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73216" stop="73111"/>
              <exon start="72748" stop="72393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73215" stop="73111"/>
              <exon start="72748" stop="72320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73215" stop="73111"/>
              <exon start="72748" stop="72400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73215" stop="73111"/>
              <exon start="72748" stop="72405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73211" stop="73111"/>
              <exon start="72748" stop="72400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73208" stop="73111"/>
              <exon start="72748" stop="72322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73207" stop="73111"/>
              <exon start="72748" stop="72405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73206" stop="73111"/>
              <exon start="72748" stop="72391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73206" stop="73111"/>
              <exon start="72748" stop="72405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73204" stop="73111"/>
              <exon start="72748" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73204" stop="73111"/>
              <exon start="72748" stop="72289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73202" stop="73111"/>
              <exon start="72748" stop="72321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73202" stop="73111"/>
              <exon start="72748" stop="72321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73201" stop="73111"/>
              <exon start="72748" stop="72321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73195" stop="73111"/>
              <exon start="72748" stop="72391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73193" stop="73111"/>
              <exon start="72748" stop="72296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73190" stop="73111"/>
              <exon start="72748" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73188" stop="73111"/>
              <exon start="72748" stop="72391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73166" stop="73111"/>
              <exon start="72748" stop="72417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73164" stop="73111"/>
              <exon start="72748" stop="72513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73161" stop="73111"/>
              <exon start="72748" stop="72391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73157" stop="73111"/>
              <exon start="72748" stop="72391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73153" stop="73111"/>
              <exon start="72748" stop="72414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73148" stop="73111"/>
              <exon start="72748" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72748" stop="72414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72731" stop="72572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72728" stop="72414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72727" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72725" stop="72414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72595" stop="72389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG : GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</gDNA_template>
            <first_frame> R  C  C  A  S  I  I  E  D  K  K  K  L  C  L  I  S  H  F  *  L  K  K  R  T  P  M  A  S  S  I  T  A  C  T  T  T  S  L  A  A  R  E  A  L  L  H  K  A  S  A  L  S  R  P  S  V  L   : G  L  P  S  M  R  K  N  V  G  R  V  K  C  S  M  E  R  E  D  S  K  S  G  I  C  G  S  L  V  A  A  T  L  S  F  S  P  T  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  F  G  V  F  G  L  V  W  S  L  Y  T  V  Y  T  S  S  L  D  E  D  E  D  S  A  M  S  L  *  F  Q  L  Q  I  T  M  *  N  H  E  F  Y  S  I  I  S  S  L  Y  L  L  P  W  L  I  V  L  Y  T  Y  E  L  L  L  L  I  I  I  *  C  M  L  K  I  F  N  D  V  N  *  F  E  F  D  K  K  I   </first_frame>
            <second_frame>  D  V  V  L  V  L  L  K  I  K  R  S  C  V  *  F  L  I  S  D  *  K  N  E  H  Q  W  L  P  A  S  L  L  V  P  P  P  L  *  P  P  V  R  P  S  Y  I  R  H  Q  L  Y  P  A  L  L  F  L  :  G  C  H  Q  *  G  R  M  W  E  G  *  S  V  Q  W  K  E  R  I  Q  N  Q  E  F  V  D  H  *  W  Q  Q  H  Y  H  S  A  Q  Q  Q  W  L  *  W  M  K  E  *  V  Q  K  E  L  G  F  H  L  G  S  V  I  I  F  L  V  G  S  F  L  E  S  L  V  W  F  G  L  F  I  L  F  T  L  L  A  L  M  R  M  K  I  L  Q  C  P  F  N  F  N  F  R  L  L  C  K  I  M  N  S  I  L  S  F  P  L  F  T  F  F  H  G  *  L  Y  Y  I  H  T  N  Y  Y  Y  *  L  S  F  S  A  C  *  K  S  L  M  T  L  I  D  L  N  L  I  K  K  F  </second_frame>
            <third_frame>   M  L  C  *  Y  Y  *  R  *  K  E  A  V  S  D  F  S  F  L  T  E  K  T  N  T  N  G  F  Q  H  H  C  L  Y  H  H  L  F  S  R  P  *  G  P  P  T  *  G  I  S  S  I  P  P  F  C  S  W :   V  A  I  N  E  E  E  C  G  K  G  E  V  F  N  G  K  R  G  F  K  I  R  N  L  W  I  I  S  G  S  N  T  I  I  Q  P  N  S  N  G  F  S  G  *  K  N  E  Y  R  R  N  W  A  S  I  W  A  Q  *  *  S  S  W  L  D  P  F  W  S  L  W  F  G  L  V  S  L  Y  C  L  H  F  *  P  *  *  G  *  R  F  C  N  V  P  L  I  S  T  S  D  Y  Y  V  K  S  *  I  L  F  Y  H  F  L  S  L  P  S  S  M  A  N  C  T  I  Y  I  R  I  T  I  T  N  Y  H  L  V  H  V  K  N  L  *  *  R  *  L  I  *  I  *  *  K  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73225" stop="73111"/>
                    <exon start="72748" stop="72459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRTPMASSITACTTTSLAAREALLHKASALSRPSVLGLPSMRKNVGRVKCSMEREDSKSGICGSLVAATLSFSPTAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTSSLDEDEDSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97301" PGL_stop="101627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97301" e_stop="97567"/>
            <exon e_start="98518" e_stop="98613"/>
            <exon e_start="98714" e_stop="98932"/>
            <exon e_start="99933" e_stop="100029"/>
            <exon e_start="100961" e_stop="101023"/>
            <exon e_start="101122" e_stop="101627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97301" e_stop="97567" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98518" e_stop="98613" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.091">
            <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98714" e_stop="98932" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99933" e_stop="100029" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100961" e_stop="101023" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="101122" e_stop="101627" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97301" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98714" stop="98885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98714" stop="98932"/>
              <exon start="99933" stop="100029"/>
              <exon start="100961" stop="101023"/>
              <exon start="101122" stop="101154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97481" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98714" stop="98932"/>
              <exon start="99933" stop="100029"/>
              <exon start="100961" stop="101023"/>
              <exon start="101122" stop="101204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98877" stop="98932"/>
              <exon start="99933" stop="100029"/>
              <exon start="100961" stop="101023"/>
              <exon start="101122" stop="101627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> L  I  H  T  T  L  Y  P  K  F  H  C  T  H  K  V  N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  I  E  G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </first_frame>
            <second_frame>  *  Y  I  Q  L  C  I  P  S  F  T  V  P  T  K  *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  K  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </second_frame>
            <third_frame>   D  T  Y  N  F  V  S  Q  V  S  L  Y  P  Q  S  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : D  *  R  L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97301" stop="97567"/>
                    <exon start="98518" stop="98613"/>
                    <exon start="98714" stop="98932"/>
                    <exon start="99933" stop="100029"/>
                    <exon start="100961" stop="101023"/>
                    <exon start="101122" stop="101315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHTTLYPKFHCTHKVNSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEIEGYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97347" e_stop="97567"/>
            <exon e_start="98518" e_stop="98613"/>
            <exon e_start="98721" e_stop="98932"/>
            <exon e_start="99933" e_stop="100029"/>
            <exon e_start="100961" e_stop="101023"/>
            <exon e_start="101122" e_stop="101627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.819"/>
          <exon-intron don_prob="0.979" acc_prob="0.483" e_score="0.948"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.972"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="0.968"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.819">
            <gDNA_exon_boundary e_start="97347" e_stop="97567" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="98518" e_stop="98613" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.483">
            <gDNA_intron_boundary i_start="98614" i_stop="98720" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="98721" e_stop="98932" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="99933" e_stop="100029" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="100961" e_stop="101023" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="101122" e_stop="101627" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97347" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98721" stop="98932"/>
              <exon start="99933" stop="100025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97347" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98721" stop="98932"/>
              <exon start="99933" stop="99989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98877" stop="98932"/>
              <exon start="99933" stop="100029"/>
              <exon start="100961" stop="101023"/>
              <exon start="101122" stop="101627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : GTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </first_frame>
            <second_frame>  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </second_frame>
            <third_frame>   N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98613" stop="98932"/>
                    <exon start="99933" stop="100029"/>
                    <exon start="100961" stop="101023"/>
                    <exon start="101122" stop="101315"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97349" stop="97567"/>
                    <exon start="98518" stop="98613"/>
                    <exon start="98721" stop="98750"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEVTSQSFLLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="103270" PGL_stop="106154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103270" e_stop="103525"/>
            <exon e_start="103604" e_stop="104392"/>
            <exon e_start="106138" e_stop="106154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103270" e_stop="103525" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103604" e_stop="104392" e_length="789"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104393" i_stop="106137" i_length="1745"/>
          </intron>
          <exon e_serial="3" e_score="0.941">
            <gDNA_exon_boundary e_start="106138" e_stop="106154" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103270" stop="103525"/>
              <exon start="103604" stop="104179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103283" stop="103525"/>
              <exon start="103604" stop="103736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="104075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103287" stop="103525"/>
              <exon start="103604" stop="103959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103287" stop="103525"/>
              <exon start="103604" stop="103938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103290" stop="103525"/>
              <exon start="103604" stop="104106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103291" stop="103525"/>
              <exon start="103604" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="104130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103296" stop="103525"/>
              <exon start="103604" stop="104044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="103723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103299" stop="103525"/>
              <exon start="103604" stop="103883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103301" stop="103525"/>
              <exon start="103604" stop="104255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103302" stop="103525"/>
              <exon start="103604" stop="103960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103303" stop="103525"/>
              <exon start="103604" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103303" stop="103525"/>
              <exon start="103604" stop="103975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103306" stop="103525"/>
              <exon start="103604" stop="104392"/>
              <exon start="106138" stop="106154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103308" stop="103525"/>
              <exon start="103604" stop="104296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103310" stop="103525"/>
              <exon start="103604" stop="104170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103312" stop="103525"/>
              <exon start="103604" stop="104328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103317" stop="103525"/>
              <exon start="103604" stop="103900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103334" stop="103525"/>
              <exon start="103604" stop="104299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103347" stop="103525"/>
              <exon start="103604" stop="103966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103350" stop="103525"/>
              <exon start="103604" stop="103826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103378" stop="103525"/>
              <exon start="103604" stop="104282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103384" stop="103525"/>
              <exon start="103604" stop="104062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103461" stop="103525"/>
              <exon start="103604" stop="104115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103695" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103775" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103907" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103927" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103957" stop="104383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA : AAAAAAAAAAAAAAAAT</gDNA_template>
            <first_frame> H  T  S  K  I  E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L   : K  K  K  K  K  N </first_frame>
            <second_frame>  I  R  A  K  *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  :  K  K  K  K  K   </second_frame>
            <third_frame>   Y  E  Q  N  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  K :   K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103525"/>
                    <exon start="103604" stop="104233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103270" e_stop="103525"/>
            <exon e_start="103604" e_stop="104438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103270" e_stop="103525" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103604" e_stop="104438" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103270" stop="103525"/>
              <exon start="103604" stop="104179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103283" stop="103525"/>
              <exon start="103604" stop="103736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="104018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="104040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="104075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103287" stop="103525"/>
              <exon start="103604" stop="103959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103287" stop="103525"/>
              <exon start="103604" stop="103938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103525"/>
              <exon start="103604" stop="104024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103290" stop="103525"/>
              <exon start="103604" stop="104106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103291" stop="103525"/>
              <exon start="103604" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="104130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103296" stop="103525"/>
              <exon start="103604" stop="104044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103525"/>
              <exon start="103604" stop="104138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="104024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="103723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103299" stop="103525"/>
              <exon start="103604" stop="103883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103301" stop="103525"/>
              <exon start="103604" stop="104255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103302" stop="103525"/>
              <exon start="103604" stop="103960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103303" stop="103525"/>
              <exon start="103604" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103303" stop="103525"/>
              <exon start="103604" stop="103975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103308" stop="103525"/>
              <exon start="103604" stop="104296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103310" stop="103525"/>
              <exon start="103604" stop="104170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103312" stop="103525"/>
              <exon start="103604" stop="104328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="103525"/>
              <exon start="103604" stop="104043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103317" stop="103525"/>
              <exon start="103604" stop="103900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103334" stop="103525"/>
              <exon start="103604" stop="104299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103347" stop="103525"/>
              <exon start="103604" stop="103966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103350" stop="103525"/>
              <exon start="103604" stop="103826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103378" stop="103525"/>
              <exon start="103604" stop="104282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103384" stop="103525"/>
              <exon start="103604" stop="104062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103461" stop="103525"/>
              <exon start="103604" stop="104115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103695" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103775" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103837" stop="104438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103907" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103927" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103957" stop="104383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</gDNA_template>
            <first_frame> H  T  S  K  I  E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L  I  I  F  S  *  L  L  L  L  L  L  Y  Q  F  *   </first_frame>
            <second_frame>  I  R  A  K  *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  L  S  S  L  N  Y  Y  Y  Y  Y  Y  T  N  F  K  </second_frame>
            <third_frame>   Y  E  Q  N  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  N  Y  L  L  L  I  I  I  I  I  I  I  P  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103525"/>
                    <exon start="103604" stop="104233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103283" e_stop="103525"/>
            <exon e_start="103604" e_stop="103914"/>
            <exon e_start="103980" e_stop="104379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103283" e_stop="103525" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103604" e_stop="103914" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103915" i_stop="103979" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="103980" e_stop="104379" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103283" stop="103525"/>
              <exon start="103604" stop="103736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103284" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103525"/>
              <exon start="103604" stop="103765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103286" stop="103525"/>
              <exon start="103604" stop="103664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="103525"/>
              <exon start="103604" stop="103850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103291" stop="103525"/>
              <exon start="103604" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103525"/>
              <exon start="103604" stop="103861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103294" stop="103525"/>
              <exon start="103604" stop="103714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103298" stop="103525"/>
              <exon start="103604" stop="103723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103299" stop="103525"/>
              <exon start="103604" stop="103883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103304" stop="103525"/>
              <exon start="103604" stop="103914"/>
              <exon start="103980" stop="104152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103317" stop="103525"/>
              <exon start="103604" stop="103900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103350" stop="103525"/>
              <exon start="103604" stop="103826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC : CAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</gDNA_template>
            <first_frame> *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A :   K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  * </first_frame>
            <second_frame>  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R   : P  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V   </second_frame>
            <third_frame>   E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  :  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103525"/>
                    <exon start="103604" stop="103914"/>
                    <exon start="103980" stop="103989"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="103285" e_stop="104438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="103285" e_stop="104438" e_length="1154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="104076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="103451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103288" stop="103522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103695" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103775" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="104388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103837" stop="104438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103907" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103927" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103957" stop="104383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</gDNA_template>
            <first_frame> E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *  G  K  I  G  Y  R  F  V  I  S  R  S  C  C  L  I  C  R  S  A  N  L  K  C  Y  A  D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L  I  I  F  S  *  L  L  L  L  L  L  Y  Q  F  *   </first_frame>
            <second_frame>  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  V  K  L  V  I  D  L  L  L  V  E  V  V  V  *  F  A  D  Q  L  T  *  N  A  M  Q  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  L  S  S  L  N  Y  Y  Y  Y  Y  Y  T  N  F  K  </second_frame>
            <third_frame>   N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R  *  N  W  L  *  I  C  Y  *  S  K  L  L  F  N  L  P  I  S  *  L  E  M  L  C  R  *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  N  Y  L  L  L  I  I  I  I  I  I  I  P  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103592" stop="104233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAMQMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103570"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEVKLVIDLLLVEVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="104404" PGL_stop="103599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104404" e_stop="103599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="104404" e_stop="103599" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104404" stop="103599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCTTAATCATCTGCA</gDNA_template>
            <first_frame> K  R  R  *  L  E  H  K  L  N  *  N  G  L  L  Y  K  I  K  K  T  K  I  T  T  G  I  *  N  T  I  F  Y  I  G  P  Q  I  Q  T  T  H  K  D  P  R  N  L  Q  C  Y  P  S  S  Y  I  R  S  L  L  C  L  P  G  G  C  F  L  R  R  R  L  H  G  L  R  F  H  T  L  H  R  C  L  F  H  S  W  L  R  C  S  F  P  R  R  S  R  P  S  R  C  P  C  Y  L  S  W  L  L  I  S  R  F  W  L  Y  S  S  L  S  F  Y  R  G  F  R  L  Y  S  C  F  R  L  C  Y  N  C  L  R  L  C  S  W  F  S  F  G  S  N  N  R  L  W  L  S  F  *  F  G  S  S  F  G  L  W  S  S  N  L  W  F  W  L  R  L  C  L  G  G  L  L  C  L  C  C  F  W  L  S  Y  G  L  F  L  S  K  S  R  S  S  C  L  W  S  W  K  L  V  G  A  L  H  L  D  K  F  T  R  S  H  K  L  L  Q  L  S  K  Q  H  F  P  E  I  *  W  K  I  F  L  L  I  F  N  E  L  C  D  R  I  L  T  R  S  S  F  I  L  Q  C  Y  N  R  F  L  N  H  L   </first_frame>
            <second_frame>  R  E  D  N  *  S  I  N  S  T  K  M  D  Y  Y  I  K  *  K  K  R  K  L  Q  L  E  F  K  I  L  F  S  I  L  G  R  R  Y  K  P  P  T  K  I  Q  E  I  Y  N  A  T  L  P  P  T  F  D  H  F  F  A  F  L  A  D  A  F  F  A  G  D  F  T  V  L  D  F  T  L  F  T  G  A  F  F  T  A  G  F  G  A  A  F  L  D  G  V  D  L  V  D  V  L  A  T  L  A  G  F  S  L  A  A  F  G  F  T  A  A  L  A  F  T  G  A  L  G  F  T  A  A  F  G  F  A  T  T  A  L  G  F  A  A  G  L  A  L  A  A  T  T  G  F  G  L  A  F  D  L  V  A  V  L  A  F  G  A  A  T  F  G  F  G  F  G  F  A  L  V  A  F  F  A  C  A  A  F  G  L  A  M  D  F  F  L  A  R  A  G  A  A  A  F  G  A  G  S  L  *  E  L  F  T  L  T  S  L  P  E  A  T  S  F  F  N  *  A  S  N  I  F  L  K  F  D  G  R  F  F  C  L  S  S  M  N  F  V  I  A  Y  *  L  D  P  V  L  S  F  N  V  T  I  A  S  L  I  I  C  </second_frame>
            <third_frame>   E  K  I  I  R  A  *  T  Q  L  K  W  I  I  I  *  N  K  K  N  E  N  Y  N  W  N  L  K  Y  Y  F  L  Y  W  A  A  D  T  N  H  P  Q  R  S  K  K  F  T  M  L  P  F  L  L  H  S  I  T  S  L  P  S  W  R  M  L  S  S  P  A  T  S  R  S  *  I  S  H  S  S  P  V  P  F  S  Q  L  A  S  V  Q  L  S  S  T  E  S  T  *  *  M  S  L  L  P  *  L  A  S  H  *  P  L  L  A  L  Q  Q  P  *  L  L  Q  G  L  *  A  L  Q  L  L  S  A  L  L  Q  L  P  *  A  L  Q  L  V  *  L  W  Q  Q  Q  Q  A  L  A  *  L  L  I  W  *  Q  F  W  P  L  E  Q  Q  P  L  V  L  A  S  A  L  P  W  W  P  S  L  P  V  L  L  L  A  *  L  W  T  F  S  *  Q  E  Q  E  Q  L  P  L  E  L  E  A  C  R  S  S  S  P  *  Q  V  Y  Q  K  P  Q  A  S  S  I  E  Q  A  T  F  S  *  N  L  M  E  D  F  S  A  Y  L  Q  *  T  L  *  S  H  T  D  S  I  Q  F  Y  P  S  M  L  Q  S  L  P  *  S  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104349" stop="103777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKLQLEFKILFSILGRRYKPPTKIQEIYNATLPPTFDHFFAFLADAFFAGDFTVLDFTLFTGAFFTAGFGAAFLDGVDLVDVLATLAGFSLAAFGFTAALAFTGALGFTAAFGFATTALGFAAGLALAATTGFGLAFDLVAVLAFGAATFGFGFGFALVAFFACAAFGLAMDFFLARAGAAAFGAGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="112294" PGL_stop="119703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112294" e_stop="112471"/>
            <exon e_start="112968" e_stop="113462"/>
            <exon e_start="115852" e_stop="116098"/>
            <exon e_start="116786" e_stop="116934"/>
            <exon e_start="117019" e_stop="117297"/>
            <exon e_start="117488" e_stop="117682"/>
            <exon e_start="119294" e_stop="119698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="112294" e_stop="112471" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112472" i_stop="112967" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112968" e_stop="113462" e_length="495"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115852" e_stop="116098" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116786" e_stop="116934" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117019" e_stop="117297" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="117488" e_stop="117682" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="119294" e_stop="119698" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112294" stop="112471"/>
              <exon start="112968" stop="113462"/>
              <exon start="115852" stop="115960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112417" stop="112471"/>
              <exon start="112968" stop="113462"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113462"/>
              <exon start="115852" stop="115974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113340" stop="113462"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115910" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115972" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117297"/>
              <exon start="117488" stop="117664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117245" stop="117297"/>
              <exon start="117488" stop="117682"/>
              <exon start="119294" stop="119642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117251" stop="117297"/>
              <exon start="117488" stop="117682"/>
              <exon start="119294" stop="119469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117575" stop="117682"/>
              <exon start="119294" stop="119681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117640" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117641" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117641" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117654" stop="117682"/>
              <exon start="119294" stop="119657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119458" stop="119698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT : CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA : ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG : GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG : AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAG</gDNA_template>
            <first_frame> L  K  V  E  D  C  N  C  I  V  F  M  S  L  L  A  K  I  *  I  E  Q  V  V  G  T  R  G  K  L  S  E  D  G  L  N  K  T  *  N  C  Y  T  Y  V  P  P  C  F  H  S  L  I  R  Y  L  F  N  S   : S  N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : C  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I   : N  A  N  A  K  C  S  C  T  P  E  Y  A  P  A  W  T  *  P  T  L  G  S  T  A  V  *  L  S  H  E  C  W  G  P  W  I  R  S  Q  P  S  V  Y  A  A  T  A  S  I  *  Q  L  F  S  P  S  R  H  A  S  R  *  A  A  S  S  G  S  P  C  L  W  Q  R  C  F  N  G  S  S  W  K  C  T  T  T  T  I  N  S  F  K   : G  H  T  E  H  T  N  P  L  V  I  C  R  C  C  Y  W  G  F  W  F  K  Y  *  L  Y  S  S  G  Q  W  C  N  Y  C  S  T  G  N  E  G  C  S  W  *  D  D  C  *  D  K  W  V  C  I  T  S  P  N  S  T  T  I  S  S   : E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  </first_frame>
            <second_frame>  *  K  *  K  T  V  I  V  *  F  S  C  L  C  W  L  K  Y  E  *  N  K  W  *  V  L  G  G  N  Y  P  K  M  A  S  I  K  P  R  I  V  T  L  M  S  R  L  A  S  T  A  S  F  D  I  S  S  I  H  :  Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L  :  M  Q  M  P  N  A  H  A  H  Q  N  M  P  P  P  G  P  N  Q  P  W  G  P  P  P  S  S  F  P  M  S  A  G  G  P  G  Y  G  A  N  H  Q  Y  M  P  P  P  R  Q  F  D  N  Y  F  P  R  V  D  M  H  Q  D  K  Q  P  H  Q  G  P  P  V  Y  G  R  D  A  S  M  G  A  H  G  N  A  Q  P  Q  Q  S  I  V  S  K  :  V  T  Q  N  I  Q  I  P  L  S  Y  A  D  A  V  I  G  A  S  G  S  N  I  S  Y  I  R  R  A  S  G  A  T  I  A  V  Q  E  T  R  G  V  P  G  E  M  T  V  E  I  N  G  S  A  S  Q  V  Q  T  A  Q  Q  L  V  Q  :  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E </second_frame>
            <third_frame>   E  S  R  R  L  *  L  Y  S  F  H  V  F  V  G  *  N  M  N  R  T  S  G  R  Y  *  G  E  I  I  R  R  W  P  Q  *  N  L  E  L  L  H  L  C  P  A  L  L  P  Q  P  H  S  I  S  L  Q  F  I :   K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N  * :   C  K  C  Q  M  L  M  H  T  R  I  C  P  R  L  D  L  T  N  L  G  V  H  R  R  L  A  F  P  *  V  L  G  A  L  D  T  E  P  T  I  S  I  C  R  H  R  V  N  L  T  I  I  F  P  E  *  T  C  I  K  I  S  S  L  I  R  V  P  L  F  M  A  E  M  L  Q  W  E  L  M  E  M  H  N  H  N  N  Q  *  F  Q  R :   S  H  R  T  Y  K  S  P  C  H  M  P  M  L  L  L  G  L  L  V  Q  I  L  V  I  F  V  G  P  V  V  Q  L  L  Q  Y  R  K  R  G  V  F  L  V  R  *  L  L  R  *  M  G  L  H  H  K  S  K  Q  H  N  N  *  F  R :   I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112367" stop="112471"/>
                    <exon start="112968" stop="113462"/>
                    <exon start="115852" stop="116098"/>
                    <exon start="116786" stop="116934"/>
                    <exon start="117019" stop="117297"/>
                    <exon start="117488" stop="117682"/>
                    <exon start="119294" stop="119467"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLGGNYPKMASIKPRIVTLMSRLASTASFDISSIHQMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERAVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPNQPWGPPPSSFPMSAGGPGYGANHQYMPPPRQFDNYFPRVDMHQDKQPHQGPPVYGRDASMGAHGNAQPQQSIVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQLVQNSIADATSSMQNTAAGPPSQGYNPYPSQGPVYSSSTGHAGHAPSADYGSVYGGSYGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112968" e_stop="113462"/>
            <exon e_start="114493" e_stop="114645"/>
            <exon e_start="115852" e_stop="116098"/>
            <exon e_start="116786" e_stop="116934"/>
            <exon e_start="117019" e_stop="117297"/>
            <exon e_start="117488" e_stop="117682"/>
            <exon e_start="119294" e_stop="119698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.928"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112968" e_stop="113462" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113463" i_stop="114492" i_length="1030"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="114493" e_stop="114645" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115852" e_stop="116098" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116786" e_stop="116934" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117019" e_stop="117297" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="117488" e_stop="117682" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="119294" e_stop="119698" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113462"/>
              <exon start="114493" stop="114631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113462"/>
              <exon start="114493" stop="114585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114572" stop="114645"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117297"/>
              <exon start="117488" stop="117650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115910" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115972" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117297"/>
              <exon start="117488" stop="117664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117245" stop="117297"/>
              <exon start="117488" stop="117682"/>
              <exon start="119294" stop="119642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117251" stop="117297"/>
              <exon start="117488" stop="117682"/>
              <exon start="119294" stop="119469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117575" stop="117682"/>
              <exon start="119294" stop="119681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117577" stop="117682"/>
              <exon start="119294" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117640" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117641" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117641" stop="117682"/>
              <exon start="119294" stop="119526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117654" stop="117682"/>
              <exon start="119294" stop="119657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119458" stop="119698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : GTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA : ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG : GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG : AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAG</gDNA_template>
            <first_frame> Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  V  C  P  Y  K  S  G  L  L  *  K  N  Q  R  S  R  L  L  P  S  T  L  S  I  T  S  A  G  S  P  S  D  N  L  S  K  L  P  Y  L  A  I  N  I  Q  K  I  A  P  C  L  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L  :  M  Q  M  P  N  A  H  A  H  Q  N  M  P  P  P  G  P  N  Q  P  W  G  P  P  P  S  S  F  P  M  S  A  G  G  P  G  Y  G  A  N  H  Q  Y  M  P  P  P  R  Q  F  D  N  Y  F  P  R  V  D  M  H  Q  D  K  Q  P  H  Q  G  P  P  V  Y  G  R  D  A  S  M  G  A  H  G  N  A  Q  P  Q  Q  S  I  V  S  K  :  V  T  Q  N  I  Q  I  P  L  S  Y  A  D  A  V  I  G  A  S  G  S  N  I  S  Y  I  R  R  A  S  G  A  T  I  A  V  Q  E  T  R  G  V  P  G  E  M  T  V  E  I  N  G  S  A  S  Q  V  Q  T  A  Q  Q  L  V  Q  :  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E </first_frame>
            <second_frame>  K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   F  V  H  I  K  V  A  Y  S  R  R  T  K  D  P  D  C  C  H  Q  H  *  A  L  Q  V  L  E  V  L  L  T  I  C  Q  N  Y  L  I  W  P  S  I  S  R  R  L  H  R  V  W :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N  * :   C  K  C  Q  M  L  M  H  T  R  I  C  P  R  L  D  L  T  N  L  G  V  H  R  R  L  A  F  P  *  V  L  G  A  L  D  T  E  P  T  I  S  I  C  R  H  R  V  N  L  T  I  I  F  P  E  *  T  C  I  K  I  S  S  L  I  R  V  P  L  F  M  A  E  M  L  Q  W  E  L  M  E  M  H  N  H  N  N  Q  *  F  Q  R :   S  H  R  T  Y  K  S  P  C  H  M  P  M  L  L  L  G  L  L  V  Q  I  L  V  I  F  V  G  P  V  V  Q  L  L  Q  Y  R  K  R  G  V  F  L  V  R  *  L  L  R  *  M  G  L  H  H  K  S  K  Q  H  N  N  *  F  R :   I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E   </second_frame>
            <third_frame>   N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : C  L  S  I  *  K  W  L  T  L  E  E  P  K  I  Q  T  A  A  I  N  I  E  H  Y  K  C  W  K  S  F  *  Q  S  V  K  I  T  L  S  G  H  Q  Y  P  E  D  C  T  V  S   : G  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I   : N  A  N  A  K  C  S  C  T  P  E  Y  A  P  A  W  T  *  P  T  L  G  S  T  A  V  *  L  S  H  E  C  W  G  P  W  I  R  S  Q  P  S  V  Y  A  A  T  A  S  I  *  Q  L  F  S  P  S  R  H  A  S  R  *  A  A  S  S  G  S  P  C  L  W  Q  R  C  F  N  G  S  S  W  K  C  T  T  T  T  I  N  S  F  K   : G  H  T  E  H  T  N  P  L  V  I  C  R  C  C  Y  W  G  F  W  F  K  Y  *  L  Y  S  S  G  Q  W  C  N  Y  C  S  T  G  N  E  G  C  S  W  *  D  D  C  *  D  K  W  V  C  I  T  S  P  N  S  T  T  I  S  S   : E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114523" stop="114645"/>
                    <exon start="115852" stop="116098"/>
                    <exon start="116786" stop="116934"/>
                    <exon start="117019" stop="117297"/>
                    <exon start="117488" stop="117682"/>
                    <exon start="119294" stop="119467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQRSRLLPSTLSITSAGSPSDNLSKLPYLAINIQKIAPCLVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPNQPWGPPPSSFPMSAGGPGYGANHQYMPPPRQFDNYFPRVDMHQDKQPHQGPPVYGRDASMGAHGNAQPQQSIVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQLVQNSIADATSSMQNTAAGPPSQGYNPYPSQGPVYSSSTGHAGHAPSADYGSVYGGSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112968" stop="113462"/>
                    <exon start="114493" stop="114522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERAVCPYKSGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119221" e_stop="119703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119221" e_stop="119703" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119221" stop="119703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119447" stop="119676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119458" stop="119698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</gDNA_template>
            <first_frame> N  S  V  C  L  T  T  E  M  S  R  C  M  L  I  L  T  T  L  I  S  Y  V  A  E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  D  I </first_frame>
            <second_frame>  I  P  S  V  L  L  L  R  C  L  D  A  C  *  F  *  L  P  L  F  L  M  L  Q  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E  I   </second_frame>
            <third_frame>   F  R  L  S  Y  Y  *  D  V  *  M  H  V  N  S  D  Y  P  Y  F  L  C  C  R  I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119253" stop="119558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHVNSDYPYFLCCRIQSLMLPAQCRTLQLDHLPKVIIPTLLRVLCTLHPLVTLVMRHLQIMVLFMEVATVIKGYPVQTSTRTTSLQLLGNFSSLVKLYHDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="112968" e_stop="113462"/>
            <exon e_start="114484" e_stop="114645"/>
            <exon e_start="115852" e_stop="116098"/>
            <exon e_start="116786" e_stop="116933"/>
            <exon e_start="117019" e_stop="117026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.918"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="112968" e_stop="113462" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113463" i_stop="114483" i_length="1021"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114484" e_stop="114645" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115852" e_stop="116098" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="116786" e_stop="116933" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116934" i_stop="117018" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117019" e_stop="117026" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112968" stop="113445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113462"/>
              <exon start="114484" stop="114645"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116933"/>
              <exon start="117019" stop="117026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT : ATGCAAAT</gDNA_template>
            <first_frame> Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  C  V  Q  V  C  P  Y  K  S  G  L  L  *  K  N  Q  R  S  R  L  L  P  S  T  L  S  I  T  S  A  G  S  P  S  D  N  L  S  K  L  P  Y  L  A  I  N  I  Q  K  I  A  P  C  L  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L :   C  K  </first_frame>
            <second_frame>  K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   V  C  R  F  V  H  I  K  V  A  Y  S  R  R  T  K  D  P  D  C  C  H  Q  H  *  A  L  Q  V  L  E  V  L  L  T  I  C  Q  N  Y  L  I  W  P  S  I  S  R  R  L  H  R  V  W :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N   : Y  A  N </second_frame>
            <third_frame>   N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : L  C  A  G  L  S  I  *  K  W  L  T  L  E  E  P  K  I  Q  T  A  A  I  N  I  E  H  Y  K  C  W  K  S  F  *  Q  S  V  K  I  T  L  S  G  H  Q  Y  P  E  D  C  T  V  S   : G  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I  :  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112968" stop="113462"/>
                    <exon start="114484" stop="114522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERACVQVCPYKSGLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114523" stop="114645"/>
                    <exon start="115852" stop="116098"/>
                    <exon start="116786" stop="116933"/>
                    <exon start="117019" stop="117025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQRSRLLPSTLSITSAGSPSDNLSKLPYLAINIQKIAPCLVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="121882" PGL_stop="120014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121882" e_stop="121865"/>
            <exon e_start="121025" e_stop="120900"/>
            <exon e_start="120603" e_stop="120014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.734" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121882" e_stop="121865" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.734" acc_prob="0.798">
            <gDNA_intron_boundary i_start="121864" i_stop="121026" i_length="839"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121025" e_stop="120900" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="120899" i_stop="120604" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="120603" e_stop="120014" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121882" stop="121865"/>
              <exon start="121025" stop="120900"/>
              <exon start="120603" stop="120014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAGGTTAATGTTCCG : ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG : ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</gDNA_template>
            <first_frame> S  K  V  N  V  P  :  I  L  G  I  L  E  N  M  S  Y  F  K  C  P  K  C  N  E  S  S  F  I  F  G  Q  G  G  A  R  K  T  A  E  E  M  G  L  K  F  L  G  E  :  I  P  L  E  V  E  I  R  S  G  S  D  E  G  V  P  I  V  M  S  N  P  D  S  V  I  S  Q  V  Y  G  N  V  A  E  K  V  V  M  R  L  E  E  V  D  K  E  Q  H  F  R  P  D  V  S  L  *  M  R  *  S  S  S  P  P  T  *  V  *  *  *  L  L  E  S  N  P  S  N  K  I  R  E  K  S  S  W  L  W  I  *  S  *  R  K  S  I  I  R  R  S  C  D  A  D  V  L  A  G  R  E  Q  S  C  *  L  T  E  L  S  L  N  N  *  H  *  L  K  V  A  G  I  M  M  Y  P  F  S  *  L  N  P  S  F  Q  H  E  K  I  I  F  T  N  D  E  H  S  V  D  *  E  G  L  V  I  L  I  F  L  G  K  K  G  E  I  K  D  F  S  C  I  G  F  L  I  F  Y  S  S  K  F  G  C  C  L  Y   </first_frame>
            <second_frame>  P  R  L  M  F  R :   Y  W  E  F  W  R  I  *  A  T  L  N  A  Q  N  A  M  N  R  P  L  S  L  V  K  E  E  L  G  K  Q  L  R  R  W  V  *  N  F  L  V  R :   Y  H  L  K  W  R  S  E  A  V  P  T  K  V  F  P  L  L  C  Q  T  L  I  L  *  S  L  K  Y  M  A  M  W  L  K  K  L  S  *  G  L  K  R  *  I  R  S  N  T  S  G  Q  M  Y  L  F  K  C  V  D  Q  A  L  H  Q  L  E  C  S  S  N  Y  *  N  P  T  L  L  T  K  S  E  K  N  L  V  G  S  G  Y  R  V  K  G  S  P  L  S  G  E  V  V  T  P  M  C  L  L  G  G  S  N  L  V  D  L  L  S  Y  H  S  T  I  N  T  N  *  K  L  Q  E  *  *  C  I  L  L  A  N  *  T  H  L  F  N  M  K  R  *  Y  L  Q  M  M  N  I  A  W  I  E  K  V  *  S  F  S  S  F  *  E  K  K  E  K  S  K  I  F  H  V  L  D  F  L  S  F  I  L  P  N  L  D  A  A  C  I  </second_frame>
            <third_frame>   Q  G  *  C  S   : D  T  G  N  F  G  E  Y  E  L  L  *  M  P  K  M  Q  *  I  V  L  Y  L  W  S  R  R  S  *  E  N  S  *  G  D  G  S  E  I  S  W  *   : D  T  T  *  S  G  D  Q  K  R  F  R  R  R  C  S  H  C  Y  V  K  P  *  F  C  N  L  S  S  I  W  Q  C  G  *  K  S  C  H  E  A  *  R  G  R  *  G  A  T  L  Q  A  R  C  I  S  L  N  A  L  I  K  L  S  T  N  L  S  V  V  V  T  T  R  I  Q  P  F  *  Q  N  Q  R  K  I  *  L  A  L  D  I  E  L  K  E  V  H  Y  Q  E  K  L  *  R  R  C  A  C  W  E  G  A  I  L  L  T  Y  *  V  I  T  Q  Q  L  T  L  T  E  S  C  R  N  N  D  V  S  F  *  L  I  E  P  I  F  S  T  *  K  D  N  I  Y  K  *  *  T  *  R  G  L  R  R  F  S  H  S  H  L  S  R  K  K  R  R  N  Q  R  F  F  M  Y  W  I  S  Y  L  L  F  F  Q  I  W  M  L  L  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121882" stop="121865"/>
                    <exon start="121025" stop="120900"/>
                    <exon start="120603" stop="120433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKVNVPILGILENMSYFKCPKCNESSFIFGQGGARKTAEEMGLKFLGEIPLEVEIRSGSDEGVPIVMSNPDSVISQVYGNVAEKVVMRLEEVDKEQHFRPDVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="126827" PGL_stop="127950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126827" e_stop="127950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="126827" e_stop="127950" e_length="1124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126827" stop="127626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126828" stop="127005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127189" stop="127950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127265" stop="127756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127645" stop="127846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATT</gDNA_template>
            <first_frame> Q  I  Q  R  Y  L  V  G  N  S  V  *  V  A  L  S  Q  V  P  S  A  *  I  F  L  R  R  W  K  K  S  *  V  L  L  Q  I  R  T  K  Y  K  Q  R  *  V  V  L  R  F  M  G  T  H  Q  T  G  I  E  V  M  K  V  K  G  N  F  T  R  K  N  *  M  N  G  N  Q  E  R  G  A  E  S  L  P  M  G  G  K  K  H  *  I  M  L  K  Q  R  G  K  G  V  R  S  *  T  R  G  F  M  L  *  E  Q  L  F  R  I  S  Q  R  W  I  K  H  R  C  L  E  M  Q  L  L  I  S  Q  I  S  R  Q  E  L  G  F  *  M  L  R  R  R  W  *  A  T  S  K  S  S  R  L  S  W  R  L  I  F  I  K  D  K  M  M  Q  L  *  E  *  A  A  L  *  M  L  T  L  F  L  E  F  *  R  H  F  R  N  I  K  W  W  H  K  N  P  M  S  H  *  Q  K  T  A  N  L  Y  T  C  S  L  Y  E  L  L  A  L  L  L  R  I  *  R  K  S  *  Q  L  L  C  L  N  D  L  D  V  Q  R  I  R  S  N  H  A  M  Y  V  D  C  S  *  M  L  A  V  L  L  *  R  P  G  G  Q  Y  Q  *  S  D  C  Y  A  L  L  D  Y  S  C  M  S  I  N  V  *  L  V  S  L  H  Y  I  L  L  T  I  Q  S  K  C  K  F  W  P  R  M  V  S  A  F  R  I  R  M  K  T  C  S  C  S  T  *  S  Q  S  C  Y  V  C  C  L  *  L  M  Q  V  S  S  C  L  L  V  I  L  M  *  V  V  R  L  S  Y  F  R  L  V  F  T  Y  E  R  R  I  M  F  *  E  F  I   </first_frame>
            <second_frame>  K  Y  K  D  I  W  S  G  T  Q  S  R  W  R  *  V  R  S  H  Q  H  K  F  F  S  E  G  G  R  R  A  E  F  C  F  R  F  V  R  S  T  S  S  A  R  *  F  S  G  L  W  E  L  I  K  R  V  S  K  *  *  R  *  R  E  T  L  Q  G  R  I  R  *  T  E  T  K  K  E  G  Q  K  A  C  Q  W  E  G  R  S  I  E  S  C  *  S  R  E  A  K  A  *  E  A  K  P  E  V  L  C  F  K  S  S  C  S  E  Y  L  K  D  G  *  S  I  A  A  W  R  C  N  C  L  Y  H  R  S  P  G  K  N  *  G  F  R  C  *  E  G  D  G  R  R  Q  A  K  A  A  G  Y  P  G  D  *  F  S  S  K  T  R  *  C  S  C  K  S  R  L  P  F  E  C  S  P  C  F  *  S  F  E  D  I  S  G  T  S  S  G  G  T  R  I  Q  C  L  I  N  R  K  R  R  T  C  T  H  V  L  Y  T  S  S  W  P  C  C  *  G  F  E  G  K  A  D  S  C  S  V  *  M  I  *  M  F  R  E  *  G  L  I  M  Q  C  M  L  T  V  V  K  C  *  P  F  C  F  K  D  P  V  V  S  I  S  D  Q  I  V  M  L  C  S  I  I  R  V  *  A  S  M  S  S  W  *  V  C  I  I  F  C  *  L  Y  N  L  N  V  S  F  G  R  E  W  Y  L  L  L  E  L  E  *  K  P  A  A  A  Q  H  E  V  N  H  A  M  Y  V  V  C  S  *  C  K  L  V  L  V  Y  W  *  F  L  C  E  W  S  D  Y  H  T  S  V  *  Y  L  R  M  N  V  A  *  C  F  E  S  L  Y  </second_frame>
            <third_frame>   N  T  K  I  F  G  R  E  L  S  L  G  G  A  K  S  G  P  I  S  I  N  F  S  P  K  V  E  E  E  L  S  F  A  S  D  S  Y  E  V  Q  A  A  L  G  S  S  Q  V  Y  G  N  S  S  N  G  Y  R  S  D  E  G  E  G  K  L  Y  K  E  E  L  D  E  R  K  P  R  K  R  G  R  K  P  A  N  G  R  E  E  A  L  N  H  V  E  A  E  R  Q  R  R  E  K  L  N  Q  R  F  Y  A  L  R  A  V  V  P  N  I  S  K  M  D  K  A  S  L  L  G  D  A  I  A  Y  I  T  D  L  Q  A  R  I  R  V  L  D  A  E  K  E  M  V  G  D  K  Q  K  Q  Q  V  I  L  E  I  D  F  H  Q  R  Q  D  D  A  V  V  R  V  G  C  P  L  N  A  H  P  V  S  R  V  L  K  T  F  Q  E  H  Q  V  V  A  Q  E  S  N  V  S  L  T  E  N  G  E  L  V  H  M  F  S  I  R  A  P  G  P  A  A  E  D  L  K  E  K  L  T  A  A  L  S  K  *  F  R  C  S  E  N  K  V  *  S  C  N  V  C  *  L  *  L  N  A  S  R  F  A  L  K  T  R  W  S  V  S  V  I  R  L  L  C  F  A  R  L  F  V  Y  E  H  Q  C  L  A  G  K  F  A  L  Y  F  V  D  Y  T  I  *  M  *  V  L  A  E  N  G  I  C  F  *  N  *  N  E  N  L  Q  L  L  N  M  K  S  I  M  L  C  M  L  F  V  V  D  A  S  *  F  L  F  T  G  D  S  Y  V  S  G  Q  T  I  I  L  P  S  S  I  Y  V  *  T  S  H  N  V  L  R  V  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126829" stop="127545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKIFGRELSLGGAKSGPISINFSPKVEEELSFASDSYEVQAALGSSQVYGNSSNGYRSDEGEGKLYKEELDERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQARIRVLDAEKEMVGDKQKQQVILEIDFHQRQDDAVVRVGCPLNAHPVSRVLKTFQEHQVVAQESNVSLTENGELVHMFSIRAPGPAAEDLKEKLTAALSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="140542" PGL_stop="136502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140542" e_stop="140474"/>
            <exon e_start="140139" e_stop="140012"/>
            <exon e_start="139701" e_stop="139582"/>
            <exon e_start="138388" e_stop="138308"/>
            <exon e_start="137544" e_stop="137467"/>
            <exon e_start="137357" e_stop="137265"/>
            <exon e_start="136556" e_stop="136502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.489" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.967"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.936"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.978"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="140542" e_stop="140474" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.999">
            <gDNA_intron_boundary i_start="140473" i_stop="140140" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="140139" e_stop="140012" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.489" acc_prob="0.999">
            <gDNA_intron_boundary i_start="140011" i_stop="139702" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="139701" e_stop="139582" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="139581" i_stop="138389" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="138388" e_stop="138308" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="138307" i_stop="137545" i_length="763"/>
          </intron>
          <exon e_serial="5" e_score="0.936">
            <gDNA_exon_boundary e_start="137544" e_stop="137467" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="137466" i_stop="137358" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="137357" e_stop="137265" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="137264" i_stop="136557" i_length="708"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="136556" e_stop="136502" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140542" stop="140474"/>
              <exon start="140139" stop="140012"/>
              <exon start="139701" stop="139582"/>
              <exon start="138388" stop="138308"/>
              <exon start="137544" stop="137467"/>
              <exon start="137357" stop="137265"/>
              <exon start="136556" stop="136502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGATTCATCTGTAACTTGTGTG : GACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACCGTTGAGTTTGTCGCTACCAAGGAGTATATG : GTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCT : GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAG : CCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAG : TGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG : GCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAG</gDNA_template>
            <first_frame> A  K  A  I  *  I  L  S  *  S  S  L  I  R  E  D  D  S  S  V  T  C  V  :  D  I  L  M  K  L  H  V  T  I  S  A  T  *  V  Q  M  A  G  V  G  M  L  M  K  G  L  N  Y  A  E  E  P  L  S  L  S  L  P  R  S  I  W :   C  E  I  Q  C  L  L  C  I  S  S  *  *  T  F  P  *  M  P  Y  R  L  V  Q  L  Q  L  L  A  V  Q  S  A  K  L  F  L  I  S  L :   T  V  L  G  H  W  S  E  L  L  H  L  T  Q  L  S  T  S  T  I  S  S  V  H  C  S  S :   H  *  C  L  *  S  L  M  S  K  M  F  T  P  P  Y  R  L  M  L  S  C  S  S  R  S :   A  V  N  T  *  S  F  F  *  K  A  S  Q  Q  C  S  R  T  T  G  L  L  I  Q  L  L  E  L  Q  S  R :   L  L  S  W  Q  *  K  A  L  E  A  N  F  L  C  F  N  Q </first_frame>
            <second_frame>  Q  R  L  Y  K  S  F  R  E  V  H  *  S  G  K  T  I  H  L  *  L  V  W :   T  Y  *  *  N  S  T  *  L  S  V  Q  L  R  S  R  W  Q  A  *  G  C  *  *  K  A  *  T  M  P  R  N  R  *  V  C  R  Y  Q  G  V  Y   : G  A  R  S  N  A  C  C  V  F  L  P  D  R  R  F  H  E  C  H  T  D  W  C  N  C  S  C  L  Q  C  N  Q  P  S  Y  F  *  S  P   : *  R  S  S  D  I  G  R  S  C  Y  I  *  L  N  Y  P  L  L  Q  S  Q  A  C  I  A  A   : A  I  D  A  Y  S  P  *  C  P  R  C  L  H  P  P  T  D  *  C  Y  R  A  A  L  G   : V  P  S  T  P  R  A  S  S  R  K  H  P  N  N  V  P  E  Q  Q  D  C  *  F  S  F  W  S  C  S  Q   : G  C  F  L  G  N  E  K  H  W  R  Q  T  S  C  V  S  I   </second_frame>
            <third_frame>   K  G  Y  I  N  P  F  V  K  F  I  D  Q  G  R  R  F  I  C  N  L  C   : G  H  T  D  E  T  P  R  D  Y  Q  C  N  L  G  P  D  G  R  R  R  D  A  D  E  R  P  E  L  C  R  G  T  V  E  F  V  A  T  K  E  Y  M  :  V  R  D  P  M  P  A  V  Y  F  F  L  I  D  V  S  M  N  A  I  Q  T  G  A  T  A  A  A  C  S  A  I  S  Q  V  I  S  D  L  P  :  D  G  P  R  T  L  V  G  V  A  T  F  D  S  T  I  H  F  Y  N  L  K  R  A  L  Q  Q  :  P  L  M  L  I  V  P  D  V  Q  D  V  Y  T  P  L  Q  T  D  V  I  V  Q  L  S  E  :  C  R  Q  H  L  E  L  L  L  E  S  I  P  T  M  F  Q  N  N  R  I  A  D  S  A  F  G  A  A  V  K  :  A  A  F  L  A  M  K  S  T  G  G  K  L  L  V  F  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140540" stop="140474"/>
                    <exon start="140139" stop="140012"/>
                    <exon start="139701" stop="139582"/>
                    <exon start="138388" stop="138308"/>
                    <exon start="137544" stop="137467"/>
                    <exon start="137357" stop="137265"/>
                    <exon start="136556" stop="136503"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGYINPFVKFIDQGRRFICNLCGHTDETPRDYQCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACSAISQVISDLPDGPRTLVGVATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLSECRQHLELLLESIPTMFQNNRIADSAFGAAVKAAFLAMKSTGGKLLVFQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 538 chains have been computed
$ 
$ memory statistics:
$ 797768 bytes spliced alignments in total
$ 239 spliced alignments have been stored
$ 3337 bytes was the average size of a spliced alignment
$ 36976 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 670 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:49:29
-->
