<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:49:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325207" ref_strand="+" ref_description="SGN-U325207        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:1202170-1202787 REVERSE | Aliases: None(evalue: 2e-06, score=49.7) genbank/nr: gi|22328251|ref|NP_680565.1| expressed protein [Arabidopsis thaliana] gi|22531271|gb|AAM97139.1| unknown protein [Arabidopsis thaliana] gi|26451580|dbj|BAC42887.1| unknown protein [Arabidopsis thaliana](evalue: 0.0001, score=49.7)">
      <seq>aaccataaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaacgggccctcacgggttccttatctcccaaaacgcgaccacctttaacatcactgcctgttaatactgtcaagtctcattctgaagatcaaaagaaatcaggaaaaacagcccaaaatttcatggtttcgataccatttaacctcaaagtggatgtaggttctaggaatgagggttccttgaatgatgagttaccgttttctgaactatgggctgggccagcgtattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2031" stop="3664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2331" g_stop="2460" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2699" g_stop="3364" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="796" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U325207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2331" e_stop="2460"/>
          <exon e_start="2699" e_stop="3364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</genome_strand>
        <mrna_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321422" ref_strand="+" ref_description="SGN-U321422        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:1202170-1202787 REVERSE | Aliases: None(evalue: 6e-07, score=52.8) genbank/nr: hypothetical(evalue: 2e-09, score=67)">
      <seq>ttttttctcaggcctaaaaggaatgcctctcttgagtttcctacttcagcatgtgatattcatttacgtcccattgccaagtctgcaccagcatctccaaccagggagagcagtctttctccgggaattgtgtttgacaatactgactcagtgacacagactcttcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttagttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttagtgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattcaaagttcgtgcagtcatggttagactatgaggggttcaacaaatggagtatgtttgtgcatcgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtagaggttgcgtaacttgttgctcaactatctttgctgccctggagatgaatttgttataaccatcaattgtcattcttgattccagtgtcgtgggattgtttattgcctcttcatgttcttttgatgttctgtaaatcggagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacgacttcaaaaaaaaaaaaaaaaaaactcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3098" stop="54985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3398" g_stop="4628" g_length="1231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1231" r_length="1231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4750" g_stop="5003" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1485" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5004" i_stop="5655" i_length="652">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5656" g_stop="5681" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1486" r_stop="1511" r_length="26" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U321422" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3398" e_stop="4628"/>
          <exon e_start="4750" e_stop="5003"/>
          <exon e_start="5656" e_stop="5681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCCTTTGCTTCTGTTGTTTGTCTCGAAGTCTATACTGTTACTAATGGAGTACCTATTTTGGTTATCAGATGCTGCTTATGTGTAGTTGGTAAATGCAAAAGCATCGTTGGTATTGGAACAACTAAAGAAAATGCACGTCATATCTACTGATTTCTTTGCTAGTTTTTATCTCAAATCTTTAGTCATGATACATTTAAAACAATGTGTTCAAGTTTGAACAAGATGAGAGCAGTTCATCTGTCTTTTACCAGTAGTGAATGTATGCACTTCGTCGATGTTAGCACATATCGTATGCAAAAGCTAATATTACTACTCCAATGCTTAAATTTGTTCGTCTCTTTTGGACCACATAACATCTTTATGACTATAAGATAAAAAAAATATTTGGTAAAACTACAAGATTCAATGTTCTTTTAGTTTCCTGTCAAGTCATAACTCAATCAATAAATTAAGACGGAGTATTATTTCACTCTTCTTGATGATGACACTTGAGCCCAAAATGTGGTACACACCCCATCATGCAACACGCATTACAAAACTGATTTTGTCATACATAGAGCATTTTCTACCAACTAGTTTGTTTGTTTATTTGTGCACGTAATTTAGAGAGGACAACTATATGGAGTATCATATTCATATGTGCATGCAGAATTAACACAACCACCTGATTGTCGA</genome_strand>
        <mrna_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346262" ref_strand="+" ref_description="SGN-U346262        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcatccaaattatatatttggtgtgaccaaaaaacataaacaagtactcttgtagatttatctgtcctcttaaaaactgctttttttgttttgttttcagaaagaaattatatggcaaatatttctacttgctcccttctcgttgctgctgtttttctagttggaatattgatgatcccatcggaaatattgggagaaacatgctatcaaatacacccagagatattgtgtgatgaaggcaaagttgaaggggaatgtttacctttctgcaatgacaaatttggatcctctgctggtggacaatgcattgagcaaattggctttgatggtcctttttgtgcatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9897" stop="8227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9597" g_stop="9438" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9437" i_stop="8717" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8716" g_stop="8527" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="350" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U346262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9597" e_stop="9438"/>
          <exon e_start="8716" e_stop="8527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAGGTAATATTTAACTACACACACGACATGTTTTTTCATTATATTGTATTTATTGATTTAATTTGTACTTGGTAGCATATATAATTTCTCCTATGTCTGTTTTTATAATCCATCTTTAATTGGACTAGACGATTAAGTTATAAGAAAGGAGAAGGATCTTGTTCGATTGATCCTTTTTATTCATGTTTAGTCCTTTTGTGTGCATCTTCAGAACCAATTTTTTGGAAATTAAAGCTAGATCAAAATCTAAGACTCGAATATAGCTTTCTATTGTTGTCTTGAATATTCCATATTTAATCTTATGTCCGTTCTTTTCTCTTTTTTTTTAATTTTGTCTACGTGGTATTCAGGGCCCACATTGGAGCTCTAACTAAATTTGTATGGCTAGGCCCTACTCGGATATGATACATCTTCAGGCCTCAAATCCGAAAGCTTTGATATATAAGAGTAAAACAGTCTCACCGTATCAAAACTCATGTTGTTGTTACATATCTATCAACATTAATATAGAAAAAGGAATTGATCGTGATTTTAAACTTGTTCTTTACATGTTGAGCTAATTGTTTAATTAATGGAGGTAGACGAGAAGTGATTAGGAAAATGATGGTTAAAAAAAACATGTGTACCATTGTATGTGGGTTAGAGAGAAAAATCAAATCAATTCATTAGAAGTGGATGATCTATGATTTTAAATGAAGTGTTTAATCTGTACGCATGCATGCAGTTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</genome_strand>
        <mrna_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316951" ref_strand="+" ref_description="SGN-U316951        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:9117910-9119809 REVERSE | Aliases: T1N24.12, T1N24_12(evalue: 1e-99, score=359) genbank/nr: gi|18420990|ref|NP_568482.1| endopeptidase - like protein [Arabidopsis thaliana] gi|13877555|gb|AAK43855.1| Unknown protein [Arabidopsis thaliana] gi|23197896|gb|AAN15475.1| Unknown protein [Arabidopsis thaliana](evalue: 1e-97, score=359)">
      <seq>aatcttctatatcctaactgcggtcgtccttcttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16953" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16653" g_stop="16552" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="165" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15440" g_stop="15324" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15240" g_stop="14962" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="561" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14804" g_stop="14691" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="675" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14399" g_stop="14327" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="748" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14128" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="815" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13597" g_stop="13339" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="1074" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U316951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16653" e_stop="16552"/>
          <exon e_start="15725" e_stop="15663"/>
          <exon e_start="15440" e_stop="15324"/>
          <exon e_start="15240" e_stop="14962"/>
          <exon e_start="14804" e_stop="14691"/>
          <exon e_start="14399" e_stop="14327"/>
          <exon e_start="14194" e_stop="14128"/>
          <exon e_start="13597" e_stop="13339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</genome_strand>
        <mrna_strand>AATCTTCTATATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335900" ref_strand="+" ref_description="SGN-U335900        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:9117910-9119809 REVERSE | Aliases: T1N24.12, T1N24_12(evalue: 2e-19, score=93.2) genbank/nr: gi|78708658|gb|ABB47633.1| expressed protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-18, score=95.5)">
      <seq>aattcccaaatcttctaaatcctaactgcgacattgtcgtccttcttcttcactcatactgtccgaagctgtgcggttcgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctgtgagtttatatttagttcatataaaactttcctgtaatatttctgatctttttccctcacttttttgggaaagaaattgtgttcgcatgtgtcttttgtttagtttatgagttaataataatttatactactgtttctgccaatgttaatttgatggcaagtagttgttgactctagaatttctgtaacactttatcttgtttctctgttgaggatatcagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16961" stop="15089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16661" g_stop="16552" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15725" g_stop="15389" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="452" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U335900" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16661" e_stop="16552"/>
          <exon e_start="15725" e_stop="15389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCCAAATCTTCTAAATCCTAACTGCG-----GTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</genome_strand>
        <mrna_strand>AATTCCCAAATCTTCTAAATCCTAACTGCGACATTGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTCGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCCCTCACTTTTTTGGGAAAGAAATTGTGTTCGCATGTGTCTTTTGTTTAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTAATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGTAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332676" ref_strand="+" ref_description="SGN-U332676        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:23386592-23388448 REVERSE | Aliases: F16M2.120(evalue: 4e-91, score=329) genbank/nr: gi|18412695|ref|NP_567144.1| expressed protein [Arabidopsis thaliana] gi|13878075|gb|AAK44115.1| unknown protein [Arabidopsis thaliana] gi|17104745|gb|AAL34261.1| unknown protein [Arabidopsis thaliana](evalue: 2e-89, score=329)">
      <seq>ttttcggtgtaaccattagagtttgctaacacaattggtggatggctcctctaaagaaatccaagaaagattctaacaagttgaagaaaatcaaagccaaaaacaagaaaaacaacattgttcctgctgagaacaaaggaactgaatgcgattggtgggatagtttctggcacaagaataaaacatcaaccccaggttctggtgtacctagtgatgaagaggaaggtttcaagtattttttccgtgtttccaacaagacttttgattacatatgttcacttgtaagggaggaccttatctcaagacctccttcaggtctgataaacattgagggaagacttcttagtgttgagaagcaagttgcgattgcattgagaagattggcttctggtgaatcccaagtttcagttggggcatcatttggggttgggcagtccactgtgtctcaggttacctggagattcattgaggcactggaagaacgtgcaaagcaccatcttaagtggccagaacctagtaagatggatataatcaagtctgagtttgaacaatcatttggtttgcctaactgttgtggagcaattgatgcaactcacatcataatgactcttcctgctattcaaacctcagatgattggtgtgatcaagaaagcaattacagcatgcttttgcaaggtattgtggacagcgagatgcgttttttagacataatgacaggatggcctggggggcatgaccacttcaaggctgttcaagtgctctggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17318" stop="19457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17618" g_stop="17812" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17813" i_stop="18584" i_length="772">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18585" g_stop="19158" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="770" r_length="575" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U332676" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17618" e_stop="17812"/>
          <exon e_start="18585" e_stop="19158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAGGTCCCTCTCTGCTCAAATTTACATTCTTTAACAACATTTTCTCAAATTCTATTGTTTTTTCGATTCCATTTCACTTATTAATTCGATTGGGGTGTTGGTAAGTGTCAAGATTGGAGCTTTGAAGTCTGATTTCTGCAAATATAGTTCGTTATTTTAACCCTTATTTGTTAAATTCGCAAAGCATTCAAGGGGATTCACGTATATAGAATATGTGCATAAAAGAATTGTTTTTGACAGCCCTTGTAGACAAGATGGCTCCACTCCCTGTAGGTTGAAGGGTTGTGTGAAAAATAATCTAATTATTCATGTTGTTGACTCTAACTAGCTAAATTGATTGACTTACTGCATTTACTTGAAGTCAGGTCTCTAAAATAGGAAGAGAAGAGGTTACTTAAGACTCCTGTTATAAATGATCTCTCTTAATAGTCTAATTTATTCTAGTGAAATCCAAGGCGTTGTAGATATTGTCAAAGGCGGAACGTCTTGTTATTGTTCTAGTTAGCATAATAATTAAAAAAAATCATTCTTAGGTTTGTAATGTGGTTGTTGTCCACTTGTCCTTAGAAAGATGAAGGTTTTCCCACATAAGCAAGTTTGAGAGATGCCAATAGAATGGAGTTGTCTGCTAGGATATTTTATGTAACAACAGTCTCGGAACCCGTCTTATTTCTTTTTAATCTTTGCAACTTTTTCCTGTAAGGTCATTTTGGATCTTTATTTTTTTTCTTTTTGTTGCAGGAATTAACTCACTCTTATACTTTTTATCTTGCAGGTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCT-GGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</genome_strand>
        <mrna_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAAGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAATGACAGGATGGCCTGGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345925" ref_strand="+" ref_description="SGN-U345925        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sulfate transporter (ST1), identical to sulfate transporter (Arabidopsis thaliana) GI:2285885 | chr3:19262274-19266738 REVERSE | Aliases: None(evalue: 3e-122, score=435) genbank/nr: gi|2285885|dbj|BAA21657.1| sulfate transporter [Arabidopsis thaliana] >gi|11279065|pir||T48901 sulfate transporter ATST1 [imported] - Arabidopsis thaliana (evalue: 2e-120, score=436)">
      <seq>gcgccattgacgtctgtcatattgggaacgattctcgtttatataacgcatgctgaaaaacacggtgttgctgtgattggagagctgaagaaagggataaatccaccatcaataatggatctgtcgtttggatcgaaatatatgacaacggctatcaaaactggcatagtcacgggtgtcattgcccttgctgaaggaatagcagtaggtcgaagttttgcaatgttcaagaattaccatatagatggtaacaaagagatgattgcttttgggatgatgaacattgttggctcatgcacttcttgttacctcactactgggccattctcgcgatcagcagtgaacttcaatgctggatgcaaaacagcagtatcaaacattgtcatggcgttggctgtgatggtgacgttgctattgctaacgccattgttccacttcactcctctcgtcgtgttgtcatccattattattgctgccatgctcggactcatcgactataatgctgccattcatctctggcatgtcgacaaattcgacttcctcgtttgcatgagtgcatacattggtgttgtctttggcaacattgaaattggcttagtcatggctgttggcttatcgttgctaagggtattactttctgtagcaaggccaaggactttagtacttggtaatattcccaattctatgatctacagaaatgtggagcaatatccaaatacaaacaacgttccaggcgttctcatacttgacattggagctcctattttcttcactaactcaagctatttaagagagaggatctcaaggtggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23894" stop="21632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23594" g_stop="23520" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23519" i_stop="23210" i_length="310">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23209" g_stop="23093" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="192" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23092" i_stop="22967" i_length="126">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22966" g_stop="22840" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22839" i_stop="22619" i_length="221">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22618" g_stop="22332" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="606" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22331" i_stop="22250" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22249" g_stop="22059" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="797" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22058" i_stop="21950" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21949" g_stop="21932" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="815" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U345925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23594" e_stop="23520"/>
          <exon e_start="23209" e_stop="23093"/>
          <exon e_start="22966" e_stop="22840"/>
          <exon e_start="22618" e_stop="22332"/>
          <exon e_start="22249" e_stop="22059"/>
          <exon e_start="21949" e_stop="21932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTGGTAACAATTTTTAATTCTATTAGTTAAGTTATGGTTACATTTTAGGAGCTACATTATCAAATACATAACATAAATAAAACATGAACATGAACAAGAGACTTGTCAATTAGTTATCCGTAGCTGTAGTTTTGGTCGCACTCAATGACAAAAAAACGACAACAAATTAAGTGAGTTCAAATTTGTGTCTGTCATGTCACTCACGGGTAGAGCATTGCGGCTTGTGTAGGGATTATTTTATTCCTTAATAATCCGAAAATGCTCAAAATAATATGTCACCCATTTTGTGGAATAATATAATGTAATATTACAGATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCTGTAAGCTGCTTTGTTTCCATCTGCGTTTTTCACTACAAACATACACATATTTTAAAAAGCTTATTTAAATGGTCTTTTTTAGGAAGGCAATGTTATTCGATAAGTAATAAAAATACTTGTGTACAGGAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTGGTATACTCAAATATCCTTGGGCCGAAAGTTCATTTATTTTGATTTGGACTAGCTAGTATCAATGTCACTTGGGCCCATATACCATGTGATTGATTAATCCACAATTTGTCCACTAAAATAAGATATTGGAAAAGAGAACCACACTTACTTGTCAAAATGTTTGATAGCGTATACAAGTTAAACTCGTAGGCTGAAAAATAAATGAATGTGCGTGCGTGCAGGGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCTGTAACTACTACTACTACTACTTCCTAATGTATATGTCACTTAAAAGAAGATAAAGTTAAAACTTTTTGTATTGTAAATGCAGGTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAGGTAATAATTTAACTAATGTATTATATATACTACCAAGTTGTAAGTATACAATACCAACAGTCTCTTTCTACAAATACTAACTATTCGCTAATTCAATTTCCTGTTATAGGATCTCAAGGTGGATTGA</genome_strand>
        <mrna_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG......................................................................................................................................................................................................................................................................................................................ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT..............................................................................................................................GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG.............................................................................................................................................................................................................................GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT..................................................................................GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG.............................................................................................................GATCTCAAGGTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327120" ref_strand="+" ref_description="SGN-U327120        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, low similarity to N-methyl-D-aspartate receptor-associated protein (Drosophila melanogaster) GI:567104; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 | chr1:730148-731379 FORWARD | Aliases: F10O3.11, F10O3_11(evalue: 7e-98, score=354) genbank/nr: gi|61889383|emb|CAI53895.2| putative receptor associated protein [Capsicum chinense] (evalue: 2e-97, score=358)">
      <seq>gattgtaagatgtggcagcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatttattgtataaatcaataattttttttattacgaaactcgttgttagtatttgtaaggttgatggatatgtgagtgaccaaaagttgatagctgaaatattatattgtataaaggggttatatctgcaaaacatttgccctttggggcaaagttgaaatatatagtagccgcaaaaaagaagtttgagtgaatcagccctacttttcggcctaaatccaaatttggttgctgttttggcaacaattttacttgaagcaaaactcatattgggctttgtcacccatgccttggaaagtcagatcttgggcttcaactagcaggtgtacttgggaaaaatcccaaagtttgtgggtgtactatagttcgacttcatatatagacagattgagaatgaacgttttctttgaaaaaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37132" stop="35093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36833" g_stop="36563" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36483" g_stop="36370" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="385" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36300" g_stop="36143" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="543" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36065" g_stop="35394" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="1215" r_length="672" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1241"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U327120" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36833" e_stop="36563"/>
          <exon e_start="36483" e_stop="36370"/>
          <exon e_start="36300" e_stop="36143"/>
          <exon e_start="36065" e_stop="35394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</genome_strand>
        <mrna_strand>GATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATTTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACCCATGCCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342447" ref_strand="+" ref_description="SGN-U342447        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcggaaactgaggttggggatgcgcaccagatttctgcttatgtcttgaaatgttcggaggccacatcatgttgtagtgtacggatagttgcatgaagtgtgatgatggtagcacttgggacaatatctgtgaaactgccttatctatctaggtttgtctgtaatgtaaatgaagatagaattagtgagaaatagtggtcaagtcatgaaaccttttttgcttttcgtataacagctagtcgccctcttcaatattgattttaggctgcagcatttccctgttgatggaaccattctcaatgatcttgcttacttggaattatacgtccaattttgttgctgggagctggagacaaaccagcggaactgcatgacatagaatgtgaatgggtcatgctctctgatgatccttgacgtttaaaataagctttcctgttccgttgtttgatcgaaataacgtgattgaaggcttaatttcttcttcaagtttgtcatttcagctatttattgactaggactgcattgcaggatactgcacatgcgaagaagtattgggaaagaattgncttctcctctacttatgtttctttccctttatataatacctacctttctnctgtaaaatcttaagttcaagatcatgatagcacatgtatgattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43537" stop="44801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43837" g_stop="44501" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U342447" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43837" e_stop="44501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</genome_strand>
        <mrna_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGNCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTNCTGTAAAATCTTAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315040" ref_strand="+" ref_description="SGN-U315040        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 8e-54, score=206) genbank/nr: gi|34902610|ref|NP_912651.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)] gi|22773254|gb|AAN06860.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)](evalue: 3e-52, score=207)">
      <seq>tgggaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53629" stop="50604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53329" g_stop="53306" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53095" g_stop="52963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="157" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51460" g_stop="50908" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="710" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50907" i_stop="50653" i_length="255">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50652" g_stop="50642" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="721" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U315040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53329" e_stop="53306"/>
          <exon e_start="53095" e_stop="52963"/>
          <exon e_start="51460" e_stop="50908"/>
          <exon e_start="50652" e_stop="50642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAA</genome_strand>
        <mrna_strand>TGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315042" ref_strand="+" ref_description="SGN-U315042        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 3e-27, score=118) genbank/nr: gi|34902610|ref|NP_912651.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)] gi|22773254|gb|AAN06860.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)](evalue: 3e-26, score=120)">
      <seq>ggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaggatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53363" stop="50552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53063" g_stop="52963" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51308" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="254" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51307" i_stop="51168" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51167" g_stop="50852" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="570" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U315042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53063" e_stop="52963"/>
          <exon e_start="51460" e_stop="51308"/>
          <exon e_start="51167" e_stop="50852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334940" ref_strand="+" ref_description="SGN-U334940        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 3e-29, score=125) genbank/nr: gi|15232536|ref|NP_191019.1| histone H2A.F/Z [Arabidopsis thaliana] gi|11275239|pir||T47615 histone H2A.F/Z - Arabidopsis thaliana gi|2407800|emb|CAA73155.1| histone H2A.F/Z [Arabidopsis thaliana] gi|7258359|emb|CAB77576.1| histone H2A.F/Z [Arabidopsis thaliana] gi|21592838|gb|AAM64788.1| histone H2A.F/Z [Arabidopsis thaliana] gi|28950691|gb|AAO63269.1| At3g54560 [Arabidopsis thaliana](evalue: 3e-27, score=125)">
      <seq>gaaagggctagtagcggggaagattcagctgcagcgtttttcccaaggagaaagactagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53362" stop="51021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53062" g_stop="52963" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51460" g_stop="51321" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="238" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U334940" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53062" e_stop="52963"/>
          <exon e_start="51460" e_stop="51321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</genome_strand>
        <mrna_strand>GAAAGGGCTAGTAGCGGGGAAGA-TTCAGCTGCAGCGTTTTTC-CCAAGGAGAAAGACTAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339965" ref_strand="+" ref_description="SGN-U339965        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | auxin-responsive protein / indoleacetic acid-induced protein 2 (IAA2), identical to SP:P49678 Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) {Arabidopsis thaliana} | chr3:8180775-8181793 REVERSE | Aliases: MXC7.6(evalue: 6e-22, score=99) genbank/nr: IAA2(evalue: 9e-34, score=144)">
      <seq>ggttcgatcctatcgaaagaacattttagaagcgagctatgttaaagtgagcatggatggtgcggcttatttaaggaaaattgatcttaatacttacaaaagttatccacaattactcaaggctttagagaacatgttcaagtgctctattgatgtatattcagaaacagatggatacaacggatgtaattatataccaacttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63223" stop="62340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62923" g_stop="62772" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62771" i_stop="62696" i_length="76">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62695" g_stop="62640" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U339965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62923" e_stop="62772"/>
          <exon e_start="62695" e_stop="62640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTGGTAAGTTTTAACATAACTATTAGTGGTCAATTCTTTTAATCAGAGTCTTATGATTTTTTATATATATAAAATTCAGATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</genome_strand>
        <mrna_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG............................................................................ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328246" ref_strand="+" ref_description="SGN-U328246        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgcgcataccttcatggaaccaaaaaaaaaaacaaattacttccggaaacagcctttctaccccacaaaggcagggatatgatctgcgtacatgttaccatacctagatcccacttgtgagatacactagcatgttgttagatacaaattacttgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65185" stop="66546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65485" g_stop="66246" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U328246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65485" e_stop="66246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACC-AAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGA-TACACTAGCATGTTGTTAGAT-ACAAATTACTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341470" ref_strand="+" ref_description="SGN-U341470        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein (FBL17), contains similarity to F-box protein FBL2 GI:6010699 from (Rattus norvegicus) | chr3:20236764-20239899 REVERSE | Aliases: T5N23.10(evalue: 8e-75, score=276) genbank/nr: gi|42565930|ref|NP_567005.2| F-box family protein (FBL17) [Arabidopsis thaliana] >gi|18087570|gb|AAL58916.1| AT3g54650/T5N23_10 [Arabidopsis thaliana] >gi|22655356|gb|AAM98270.1| At3g54650/T5N23_10 [Arabidopsis thaliana] (evalue: 6e-73, score=276)">
      <seq>cgcctccggcgttgctttcatcggcgagggtttgtaaggggtggttggaaagttctagaaggatctggaagtctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctcttagaatggaaagtgacattgatgctaccatgttggcctgcattgctttttcctgtcctaaactggattcgatggagatacttatgtgtaatacctcagtcaatcggatcactggggatgaattgggtcgttttgttgctgagaaaagatctcttactaatctcaagatggaaggttgctctaatcttgggggtttcactctttgctcaaccagtctttcaactctttcgctttcagatctctattgtcatgctaagatggtcttcaactgccccaacttgaaggatgtttccctggatttttctcaccaagaaaatgacaccaccgatcttactctcatggtcgatggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70156" stop="67964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69856" g_stop="69676" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69426" g_stop="69325" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68436" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="428" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68356" g_stop="68264" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U341470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69856" e_stop="69676"/>
          <exon e_start="69426" e_stop="69325"/>
          <exon e_start="68580" e_stop="68436"/>
          <exon e_start="68356" e_stop="68264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</genome_strand>
        <mrna_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342916" ref_strand="+" ref_description="SGN-U342916        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein (FBL17), contains similarity to F-box protein FBL2 GI:6010699 from (Rattus norvegicus) | chr3:20236764-20239899 REVERSE | Aliases: T5N23.10(evalue: 3e-33, score=139) genbank/nr: gi|42565930|ref|NP_567005.2| F-box family protein (FBL17) [Arabidopsis thaliana] >gi|18087570|gb|AAL58916.1| AT3g54650/T5N23_10 [Arabidopsis thaliana] >gi|22655356|gb|AAM98270.1| At3g54650/T5N23_10 [Arabidopsis thaliana] (evalue: 2e-31, score=139)">
      <seq>caaactacagaaaactcccgcgccattctcccaccttttatttttactcatctcttacctcaattttacctacacatttcactgtcgccgccggcaagcttccgattaacaatggcggatcctaaatttatatatataaagctctaaaaaattctgatcggaagaactcactgtacaattttttttggatccgccaattgacggcgaaatcgagatgcagggccgtcaaccccatccccacaccaccactcctatatccgaagttatccttccaaagcgtggcaagaagcggggtagctacagttgtggccgatgcggtgtacccaaaaaaggccatgtttgcaattttcctaagaaccttaatccgattgataatcccagtcccaatcccaattcgtcactcttagcttccccaccctctgttgttcgtcctcagccgccacctcccctgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgagggggatttctccgatctggataacgaatcggatcgagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgagggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70799" stop="69522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70499" g_stop="69822" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U342916" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70499" e_stop="69822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</genome_strand>
        <mrna_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAA-TT-TATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313428" ref_strand="+" ref_description="SGN-U313428        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II reaction center W (PsbW) protein-related, similar to photosystem II reaction center W protein SP:Q41387 from (Spinacia oleracea) | chr2:13026105-13027271 REVERSE | Aliases: T6B20.8, T6B20_8(evalue: 3e-34, score=141) genbank/nr: gi|15224531|ref|NP_180615.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|30684638|ref|NP_850149.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|25354997|pir||A84710 photosystem II reaction center 6.1KD protein [imported] - Arabidopsis thaliana gi|1946362|gb|AAB63080.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|11762232|gb|AAG40394.1| At2g30570 [Arabidopsis thaliana] gi|14030715|gb|AAK53032.1| At2g30570/T6B20.8 [Arabidopsis thaliana] gi|21593002|gb|AAM64951.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|23506075|gb|AAN28897.1| At2g30570/T6B20.8 [Arabidopsis thaliana](evalue: 2e-32, score=141)">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73522" stop="72026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72748" g_stop="72327" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="570"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U313428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73111"/>
          <exon e_start="72748" e_stop="72327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328714" ref_strand="+" ref_description="SGN-U328714        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G69523.1 | Symbol: None | UbiE/COQ5 methyltransferase family protein, low similarity to SP:Q05197 Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17) (Rhodopseudomonas sphaeroides) {Rhodobacter sphaeroides}; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family | chr1:26133214-26134912 FORWARD | Aliases: None (evalue: 7e-74, score=273) genbank/nr: gi|50912691|ref|XP_467753.1| UbiE/COQ5 methyltransferase-like [Oryza sativa (japonica cultivar-group)] >gi|46390636|dbj|BAD16119.1| UbiE/COQ5 methyltransferase-like [Oryza sativa (japonica cultivar-group)] (evalue: 3e-73, score=277)">
      <seq>ttgatacatacaactttgtatcccaagtttcactgtacccacaaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgctcgatccgttgcagcaggctgttgcagatggttgtcattttaccaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97001" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97301" g_stop="97567" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98518" g_stop="98613" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98714" g_stop="98932" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="582" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="100029" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="679" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100961" g_stop="101023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="742" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101122" g_stop="101204" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="825" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U328714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97301" e_stop="97567"/>
          <exon e_start="98518" e_stop="98613"/>
          <exon e_start="98714" e_stop="98932"/>
          <exon e_start="99933" e_stop="100029"/>
          <exon e_start="100961" e_stop="101023"/>
          <exon e_start="101122" e_stop="101204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</genome_strand>
        <mrna_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313703" ref_strand="+" ref_description="SGN-U313703        Tomato 200607 #1 [66 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H1, putative, similar to histone H1-1 GB:CAA44312 GI:16314 from (Arabidopsis thaliana); identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560 | chr1:2076503-2077697 REVERSE | Aliases: F4H5.15, F4H5_15(evalue: 3e-22, score=102) genbank/nr: gi|3021487|emb|CAA12232.1| histone H1 [Lycopersicon esculentum] (evalue: 2e-40, score=169)">
      <seq>gatacgagcaaaatagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgggggggggggggggcccccaccttcacaaaangggggggggggggggggccccccccccccccctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102971" stop="106453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103270" g_stop="103525" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="104391" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="1044" r_length="788" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104392" i_stop="106020" i_length="1629">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106021" g_stop="106054" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1045" r_stop="1078" r_length="34" r_score="0.765"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106055" i_stop="106132" i_length="78">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106133" g_stop="106160" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1106" r_length="28" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U313703" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103270" e_stop="103525"/>
          <exon e_start="103604" e_stop="104391"/>
          <exon e_start="106021" e_stop="106054"/>
          <exon e_start="106133" e_stop="106160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAGTATAGTCGGTCAAATACTGAAATGCATCATCGTTAATTTTCCTTTTATGATGCACATAATTGGTTTTAACTTTTACATTATAACAAAAATCTAATTTCTCGGCGCATTGAAACGCAGTATAAATGTGTATTATATTCAAAAGATAACGTAATAAATTGAGCTAAATTAAATTGAAGAGGCTAAACTGAAAATTCAAAACCTAAATTGGACGAGACATTATACATCAGTAAGGTGTCCTTAAAAAAAATTATAATTGTGTATTTCAATCCATCTCAACCTATTAATAATTGTGTTGATTTGCAACTCAAATTAACTCATCAGAAGTTTTATAAATTGTTTTTTTTTTCTAGTTTGATATATTATTTATAGCCAATAGTAAAGAAAAAATATTTTTTTATTGGTACAAAAAAACTTCTAAACGAACAATTAAACTTAGTAAATGAGCTGATTTGGATCTTGATTCATTTTGTAACCCATTTTTTAACCCGACCCCTTTTAACCCAAGTAAAATTGAATTGAGTTGGATTTTAACTTATTATTGTCTTGACCCATTATAATTTGTTCAAATTTGACACAATTCGTTTAATTGTCACCTCTACATAAATTACACAATTCAACATAATTATATTAATAATTTCACAAAAAAGTAATAGTGCAAAATATTATTCTAATAATGTTCTCTTATTAAGTGTGCATTATTTTCACAAATTTACTTAATGCGGATTAAAAAATATAATACACTTAGTACAGATATAATTTATAACCTCATTGAAATCAATAAAACATTCACATGACAAAATCTAGTTAAAAATTAAGCTTGAATTTCAAGTGAACATTGCCCTATTAAATATGAATGAATCTACTTATTATTTTATATATGTATTTCCTCATAACTTAAACACTTACTAATATGAAGTTCGGAGCCTAAAGGTTACAAAATATTAACAAAAATTTTAAAATGGTATATAAAATTTTATATTAATCAAAACGGCAAAGTCGCTGCATCAACAGCGATTTACTCCACCGGAAAAAGCAAAATCGCTGCAGAGGCAGTGATTTTACAAAATGTGAATTTTTTTTTTAAAAAAATGAAATCGCTACCTAGGCAGCAATTTAAATTTTTTTTTAAAAAAATAAGGAAAATCGCTGCCTAGGCAGCGATTTTTTTTAAAAAAAAGTTGAAATGTGGAAGTCGCTGCCCAGGCAGCGACTTTTATAATTTTTATTTTTTGTTTTAATTTTTAAGATTTTTTTTTTTAAAAAAATTATAAAATTTATAAATCGCTGCCTAGGCAGTGGTTTTTTTTAAAAAAAAAACTTATAAATTTTTTTAAATCGCTACCTACACAGCGATTTATAAATTTATTTTTTTTAAAATATGTAAATCGCTTACCGAATTTATAATTTTTTTTTAAAATATGGAAATCACTGCAATTTTCCAAAAATAATTTTTTTTAAAAATAAAATTTAAAGCAACGATTTTGTAAAAAAATATTATTAAATTTTTTTATTTTATAAAATTTCTGCTTTAAATTTTTATTTTTTTTTAAAAAAAATCCATATTGTCTCCATATTTTTTAAGAAAAAAATTTAAAAATTAAAAAAAAATTATAAAAGTCGGTGCCTGGGCAGCGACTTGCACATTTCAAAAACGAATTTTGTATAAAAGTCGCTGCCTTGGCAGCGACTTCCACATTTCAAAAAAAAAAAAAAAATTTAAAA</genome_strand>
        <mrna_strand>GATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................AAGAGAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313702" ref_strand="+" ref_description="SGN-U313702        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H1, putative, similar to histone H1-1 GB:CAA44312 GI:16314 from (Arabidopsis thaliana); identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560 | chr1:2076503-2077697 REVERSE | Aliases: F4H5.15, F4H5_15(evalue: 2e-18, score=90.1) genbank/nr: gi|3021487|emb|CAA12232.1| histone H1 [Lycopersicon esculentum] (evalue: 4e-36, score=155)">
      <seq>ttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgaggtaaaattggttatagatttgttattagtcgaagttgttgtttaatttgccgatcagctaacttgaaatgctatgcagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagggggaaaaaaaaaaaaaaaaaaccaaaaaaaaaacagggggggggggcggggcccccctttctaaaaagnagggggggggggggggccccccccccttctttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102989" stop="106453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103289" g_stop="104392" g_length="1104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1104" r_length="1104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104393" i_stop="106020" i_length="1628">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106021" g_stop="106060" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1144" r_length="40" r_score="0.700"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106061" i_stop="106137" i_length="77">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106138" g_stop="106160" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1167" r_length="23" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U313702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1167</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103289" e_stop="104392"/>
          <exon e_start="106021" e_stop="106060"/>
          <exon e_start="106138" e_stop="106160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAGTATAGTCGGTCAAATACTGAAATGCATCATCGTTAATTTTCCTTTTATGATGCACATAATTGGTTTTAACTTTTACATTATAACAAAAATCTAATTTCTCGGCGCATTGAAACGCAGTATAAATGTGTATTATATTCAAAAGATAACGTAATAAATTGAGCTAAATTAAATTGAAGAGGCTAAACTGAAAATTCAAAACCTAAATTGGACGAGACATTATACATCAGTAAGGTGTCCTTAAAAAAAATTATAATTGTGTATTTCAATCCATCTCAACCTATTAATAATTGTGTTGATTTGCAACTCAAATTAACTCATCAGAAGTTTTATAAATTGTTTTTTTTTTCTAGTTTGATATATTATTTATAGCCAATAGTAAAGAAAAAATATTTTTTTATTGGTACAAAAAAACTTCTAAACGAACAATTAAACTTAGTAAATGAGCTGATTTGGATCTTGATTCATTTTGTAACCCATTTTTTAACCCGACCCCTTTTAACCCAAGTAAAATTGAATTGAGTTGGATTTTAACTTATTATTGTCTTGACCCATTATAATTTGTTCAAATTTGACACAATTCGTTTAATTGTCACCTCTACATAAATTACACAATTCAACATAATTATATTAATAATTTCACAAAAAAGTAATAGTGCAAAATATTATTCTAATAATGTTCTCTTATTAAGTGTGCATTATTTTCACAAATTTACTTAATGCGGATTAAAAAATATAATACACTTAGTACAGATATAATTTATAACCTCATTGAAATCAATAAAACATTCACATGACAAAATCTAGTTAAAAATTAAGCTTGAATTTCAAGTGAACATTGCCCTATTAAATATGAATGAATCTACTTATTATTTTATATATGTATTTCCTCATAACTTAAACACTTACTAATATGAAGTTCGGAGCCTAAAGGTTACAAAATATTAACAAAAATTTTAAAATGGTATATAAAATTTTATATTAATCAAAACGGCAAAGTCGCTGCATCAACAGCGATTTACTCCACCGGAAAAAGCAAAATCGCTGCAGAGGCAGTGATTTTACAAAATGTGAATTTTTTTTTTAAAAAAATGAAATCGCTACCTAGGCAGCAATTTAAATTTTTTTTTAAAAAAATAAGGAAAATCGCTGCCTAGGCAGCGATTTTTTTTAAAAAAAAGTTGAAATGTGGAAGTCGCTGCCCAGGCAGCGACTTTTATAATTTTTATTTTTTGTTTTAATTTTTAAGATTTTTTTTTTTAAAAAAATTATAAAATTTATAAATCGCTGCCTAGGCAGTGGTTTTTTTTAAAAAAAAAACTTATAAATTTTTTTAAATCGCTACCTACACAGCGATTTATAAATTTATTTTTTTTAAAATATGTAAATCGCTTACCGAATTTATAATTTTTTTTTAAAATATGGAAATCACTGCAATTTTCCAAAAATAATTTTTTTTAAAAATAAAATTTAAAGCAACGATTTTGTAAAAAAATATTATTAAATTTTTTTATTTTATAAAATTTCTGCTTTAAATTTTTATTTTTTTTTAAAAAAAATCCATATTGTCTCCATATTTTTTAAGAAAAAAATTTAAAAATTAAAAAAAAATTATAAAAGTCGGTGCCTGGGCAGCGACTTGCACATTTCAAAAACGAATTTTGTATAAAAGTCGCTGCCTTGGCAGCGACTTCCACATTTCAAAAAAAAAAAAAAAATTTAAAA</genome_strand>
        <mrna_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGGGGA.............................................................................AAAAAAAAAAAAAAAAACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334552" ref_strand="+" ref_description="SGN-U334552        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H1, putative, similar to histone H1-1 GB:CAA44312 GI:16314 from (Arabidopsis thaliana); identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560 | chr1:2076503-2077697 REVERSE | Aliases: F4H5.15, F4H5_15(evalue: 2e-22, score=102) genbank/nr: gi|3021487|emb|CAA12232.1| histone H1 [Lycopersicon esculentum] (evalue: 1e-40, score=169)">
      <seq>agatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaagcctaagggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103004" stop="104452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103304" g_stop="103525" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103604" g_stop="103914" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="533" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103915" i_stop="103979" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103980" g_stop="104152" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="707" r_length="174" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U334552" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103304" e_stop="103525"/>
          <exon e_start="103604" e_stop="103914"/>
          <exon e_start="103980" e_stop="104152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAA-GGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</genome_strand>
        <mrna_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC.................................................................CAAAGCCTAAGGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317716" ref_strand="+" ref_description="SGN-U317716        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: FLK | KH domain-containing protein, similar putative nucleic acid binding protein GB:CAB39665 (Arabidopsis thaliana); Pfam HMM hit: KH domain family of RNA binding proteins | chr3:1250568-1254878 REVERSE | Aliases: F7O18.9, F7O18_9, FLK, FLOWERING LOCUS KH DOMAIN(evalue: 4e-121, score=432) genbank/nr: gi|15229321|ref|NP_187112.1| KH domain protein [Arabidopsis thaliana] gi|6175183|gb|AAF04909.1| putative RNA-binding protein [Arabidopsis thaliana] gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana](evalue: 3e-119, score=432)">
      <seq>gcgattggcggccaatcggccgaattgaaagtagaagactgtaattgtatagttttcatgtctttgttggctaaaatatgaatagaacaagtggtaggtactagggggaaattacccgaagatggcctcaataaaacctagaattgttacacttatgtcccgccttgcttccacagcctcattcgatatctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcagagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtccccctgtttatggcagagatgcttcaatgggagctcatggaaatgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaactaatgctatttttctgcaagagagatattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111994" stop="120006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112294" g_stop="112471" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="202" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="112967" i_length="496">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112968" g_stop="113462" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="697" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="944" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116786" g_stop="116934" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1093" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117019" g_stop="117297" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1372" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117488" g_stop="117682" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1567" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119294" g_stop="119703" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1568" r_stop="1977" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1979" polyA_stop="1995"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U317716" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1953</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112294" e_stop="112471"/>
          <exon e_start="112968" e_stop="113462"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116934"/>
          <exon e_start="117019" e_stop="117297"/>
          <exon e_start="117488" e_stop="117682"/>
          <exon e_start="119294" e_stop="119703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCATGTAAGTTTAATTTGATGATTAAGTTTTCATATCCATTGATATTTTTCCCTTAATTGTTTCGTCAATCTGTATGGTGTTTAAAATTTGTATGGGTAAATTCAGGGGTAGGGCAAAGACGTCCATTGAAATCCCAAATGGTGTAAAATTACACTGTTTATATCTGGAAGTATATTTTTTTTTTTATGTATATATAGTTGATGTCGGAACTCTTTGAGGTCAAATTTCACAGTTTTTACTTTTTTTTTTTTAAAAAAATTAAATATGTATGTATTGTAGTTTACCCATCAAGCTAATGGGGACTTTTTCAATTGTTGGGCCAACTTTTCCGTTTCGAGAAGCTTCTAATTCTGCAGTTATGATCTTTTGGAACACAAAGACAAACTGCTATATCGTGTTAGTTTTTGGACACATAGGGAAATTTGAATGTTTGACAGTGGTTTGATTTATTTGACATTCTTTGTTTACGTTGTCAAAGCTGATTTTTTTTTTCTTCCAGCAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</genome_strand>
        <mrna_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTACCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336246" ref_strand="+" ref_description="SGN-U336246        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: FLK | KH domain-containing protein, similar putative nucleic acid binding protein GB:CAB39665 (Arabidopsis thaliana); Pfam HMM hit: KH domain family of RNA binding proteins | chr3:1250568-1254878 REVERSE | Aliases: F7O18.9, F7O18_9, FLK, FLOWERING LOCUS KH DOMAIN(evalue: 3e-57, score=218) genbank/nr: gi|15229321|ref|NP_187112.1| KH domain protein [Arabidopsis thaliana] gi|6175183|gb|AAF04909.1| putative RNA-binding protein [Arabidopsis thaliana] gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana](evalue: 2e-55, score=218)">
      <seq>gttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagcttgtgtgcaggtttgtccatataaaagtggcttactctagaagaaccaaagatccagactgctgccatcaacattgagcattacaagtgctggaagtccttctgacaatctgtcaaaattaccttatctggccatcaatatccagaagattgcaccgtgtctggtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaagggaatttttagtagatcgcagtgtaattggattatttgagaaattatgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112962" stop="117238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113262" g_stop="113462" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113463" i_stop="114483" i_length="1021">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114484" g_stop="114645" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="363" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115852" g_stop="116098" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="610" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116786" g_stop="116933" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="758" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116934" i_stop="117018" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117019" g_stop="117026" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="766" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U336246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113262" e_stop="113462"/>
          <exon e_start="114484" e_stop="114645"/>
          <exon e_start="115852" e_stop="116098"/>
          <exon e_start="116786" e_stop="116933"/>
          <exon e_start="117019" e_stop="117026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAAT</genome_strand>
        <mrna_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGGAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT.....................................................................................ATGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346201" ref_strand="+" ref_description="SGN-U346201        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:10657393-10659243 FORWARD | Aliases: F24J7.100, F24J7_100(evalue: 9e-28, score=120) genbank/nr: expressed(evalue: 4e-31, score=138)">
      <seq>tccaaggttaatgttccgatactgggaattttggagaatatgagctactttaaatgcccaaaatgcaatgaatcgtcctttatctttggtcaaggaggagctaggaaaacagctgaggagatgggtctgaaatttcttggtgagataccacttgaagtggagatcagaagcggttccgacgaaggtgttcccattgttatgtcaaaccctgattctgtaatctctcaagtatatggcaatgtggctgaaaaagttgtcatgaggcttgaagaggtagataaggagcaacacttcaggccagatgtatctctttaaatgcgttgatcaagctctccaccaacttgagtgtagtagtaactactagaatccaacccttctaacaaaatcagagaaaaatctagttggctctggatatagagttaaaggaagtccattatcaggagaagttgtgacgccgatgtgcttgctgggagggagcaatcttgttgacttactgagttatcactcaacaattaacactaactgaaagttgcaggaataatgatgtatccttttagctaattgaacccatcttttcaacatgaaaagataatatttacaaatgatgaacatagcgtggattgagaaggtttagtcattctcatctttctaggaaaaaaaggggaaatcaaagatttttcatggattggatttcttatctttatttcttccaattggatgctgcttgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="-" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122182" stop="119714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121882" g_stop="121865" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121864" i_stop="121026" i_length="839">
            <donor d_prob="0.734" d_score="0.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121025" g_stop="120900" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="144" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120899" i_stop="120604" i_length="296">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120603" g_stop="120014" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="732" r_length="588" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="-" ref_id="SGN-U346201" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121882" e_stop="121865"/>
          <exon e_start="121025" e_stop="120900"/>
          <exon e_start="120603" e_stop="120014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGTTAATGTTCCGGTATGATCCATACTGAGCTTGCTGTGTACGAGCTTATAACAACAATGAGAGAGTAGGATTAAAATATGGGGCGGAGAAGCAATATTTGTGACTTGCATTGGGTTAGTTGTGAAGTATAAATATGAACTCCTGGATAAAACTTAAAAAAGTATGTGCCTTATTTGATTTATCACTCATAAATAGTGACTTAATGATTGAAATAGCCATCAAACCCCATTACTGGGCCTATGTACTTTTAGTGCTTTACACTCCTCTTCATCTTGTTGATGTGGAATCTAGTAGAGAGCTAAGAAATGTTACCTAGATATCAGATGAATGTTCGATGTTTTAAGAAGTCAGTTTTCATGTTTTTTTATGTTCCATGGGTAATCCCCACACACACACACTAGAATCTAGATCCAAGGATATGACATTGATAACTAGATGCAGAGATATGCAATTTCATCTGTTTGGAACTCCACCTCTTCCATGAAAAAAAGGGAACACTTAAGTGAAACTATGTTGCATGGATAGACTGATATTATGTACCTAAACACAAGACTAAGAACAAAAGGGTAAGGACTCTTATAAAATCGAGCAGAGTCATAACAATGTTGACACTGTTACGTCTTTGAACTGGAACAGTTTGGATACTGACATACTGTTACTCTGAGACGAATTTCAGGCTAACAATATTAATTGAAGTTGGATTGAGAAAATGCTGTTTCCTTACTGCTACCAACCTAATGTATAAATAGAGAAGGCTTAGAATAGATATACATTGAGATATCATGCAGACGCATGCTATAGCTTAATGCATCTATGATATAGTTATAATTAAACAGTTGTTCTTAACACAGATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAGGTATGTCACTGATTATCTTCTCTCTTTTGAATACAAACACTCATGAGCCCCCCTCGATTGGATGCCTAGAAAAGCTTACTGCAGGCACTTCTAGGAAATCTATAATGAAAGGATCCTTAAAATGGTCCCATCACATTCTCATGATGCTTCTTTGTTTCCCTTTTTTGTGGCCATTTCTTTTCTGCTGTCACACTCTTTAACTATTTTGTTTAAGATACAATTAGATTGCTGATACCTTTTCTCAACTTTAATTTTCATCATAAATGTTGTGTTAATTGATGTGTGTCCCCTAGTAGATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</genome_strand>
        <mrna_strand>TCCAAGGTTAATGTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG........................................................................................................................................................................................................................................................................................................ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGGGAAATCAAAGATTTTTCATGGATTGGATTTCTTATCTTTATTTCTTCC-AA-TTGGATGCTGCTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326622" ref_strand="+" ref_description="SGN-U326622        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G16430.1 | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr4:9267316-9269201 FORWARD | Aliases: DL4240W, FCAALL.202 (evalue: 2e-73, score=272) genbank/nr: gi|15234929|ref|NP_193376.1| bHLH protein family [Arabidopsis thaliana] gi|7485026|pir||A71431 hypothetical protein - Arabidopsis thaliana gi|2244999|emb|CAB10419.1| transcription factor like protein [Arabidopsis thaliana] gi|7268393|emb|CAB78685.1| transcription factor like protein [Arabidopsis thaliana] gi|16226919|gb|AAL16298.1| AT4g16430/dl4240w [Arabidopsis thaliana] gi|16323045|gb|AAL15257.1| AT4g16430/dl4240w [Arabidopsis thaliana] gi|18026954|gb|AAL55710.1| putative transcription factor BHLH3 [Arabidopsis thaliana] gi|25141207|gb|AAN73298.1| At4g16430/dl4240w [Arabidopsis thaliana](evalue: 2e-71, score=272)">
      <seq>caaatacaaagatatttggtcgggaactcagtctaggtggcgctaagtcaggtcccatcagcataaatttttctccgaaggtggaagaagagctgagttttgcttcagattcgtacgaagtacaagcagcgctaggtagttctcaggtttatgggaactcatcaaacgggtatcgaagtgatgaaggtgaagggaaactttacaaggaagaattagatgaacggaaaccaagaaagaggggcagaaagcctgccaatgggagggaagaagcattgaatcatgttgaagcagagaggcaaaggcgtgagaagctaaaccagaggttttatgctttaagagcagttgttccgaatatctcaaagatggataaagcatcgctgcttggagatgcaattgcttatatcacagatctccaggcaagaattagggttttagatgctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgaggatttgaaggaaaagctgacagctgctctgtctaaatgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaaagacccggtggtcagtatcagtgatcagattgttatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatacaatctaaatgtaagttttggccgagaatggtatctgcttttagaattagaatgaaaacctgcagctgctcaacatgaagtcaatcatgctatgtatgttgtttgtagttgatgcaagttagttcttgtttactggtgattcttatgtgagtggtcagactatcatacttccgtctagtatttacgtatgaacgtcgcataatgtttgagagtttatattaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0028D14-WbBW5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0028D14.1" temp_strand="+" temp_description="C06HBa0028D14.1  AC219205.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0028D14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126527" stop="128253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126827" g_stop="127950" g_length="1124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1123" r_length="1123" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1124" polyA_stop="1142"/>
      <MATCH_line gen_id="C06HBa0028D14.1" gen_strand="+" ref_id="SGN-U326622" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0028D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126827" e_stop="127950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATT</genome_strand>
        <mrna_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATG-TTTGAGAGTTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2331" PGL_stop="3364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2331" e_stop="2460"/>
            <exon e_start="2699" e_stop="3364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2331" e_stop="2460" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2461" i_stop="2698" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2699" e_stop="3364" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2331" stop="2460"/>
              <exon start="2699" stop="3364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG : AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</gDNA_template>
            <first_frame> N  H  K  N  Q  V  Q  *  Y  L  L  R  I  S  F  L  C  L  L  E  *  G  E  K  S  H  H  K  S  P  F  S  A  L  C  F  S  I  Y  F  L  T  S   : E  T  E  G  W  S  G  D  C  G  Y  I  F  H  R  R  A  C  *  R  I  V  W  I  Q  *  *  L  F  *  F  P  G  N  L  L  F  E  K  I  F  R  I  Y  S  H  S  A  V  W  I  F  E  H  C  C  F  C  L  D  F  Q  A  C  R  S  D  S  E  L  *  W  N  L  I  E  S  V  I  G  S  V  E  N  D  C  C  S  S  A  S  G  S  K  L  F  G  K  *  G  T  W  P  Y  S  I  W  V  I  W  F  T  S  L  W  W  V  H  G  G  K  L  S  G  F  *  V  Q  G  R  F  I  S  Y  Q  I  E  V  L  Q  E  T  C  H  Q  T  G  P  H  G  F  L  I  S  Q  N  A  T  T  F  N  I  T  A  C  *  Y  C  Q  V  S  F  *  R  S  K  E  I  R  K  N  S  P  K  F  H  G  F  D  T  I  *  P  Q  S  G  C  R  F  *  E  *  G  F  L  E  *  *  V  T  V  F  *  T  M  G  W  A  S  V  F  K  </first_frame>
            <second_frame>  T  I  K  T  K  Y  S  N  I  Y  C  A  F  R  F  F  A  Y  *  N  K  E  K  N  L  I  I  N  H  P  F  Q  H  S  A  S  V  Y  T  F  *  H  Q  :  K  L  K  G  G  V  V  I  V  D  I  F  F  I  D  V  R  V  E  E  *  F  G  F  S  D  S  Y  F  D  F  L  V  T  Y  C  L  R  K  F  L  G  S  T  V  I  Q  Q  Y  G  S  L  N  T  V  V  S  A  *  I  F  R  L  V  D  Q  I  V  S  Y  S  G  I  *  S  N  R  L  L  A  L  L  K  M  I  V  V  P  Q  H  R  D  Q  N  Y  L  E  S  R  A  H  G  P  T  R  F  G  S  F  G  S  P  P  S  G  G  F  M  E  V  N  C  R  A  F  E  S  R  A  G  L  Y  H  T  K  S  K  S  C  K  K  P  V  I  K  R  A  L  T  G  S  L  S  P  K  T  R  P  P  L  T  S  L  P  V  N  T  V  K  S  H  S  E  D  Q  K  K  S  G  K  T  A  Q  N  F  M  V  S  I  P  F  N  L  K  V  D  V  G  S  R  N  E  G  S  L  N  D  E  L  P  F  S  E  L  W  A  G  P  A  Y  S  N </second_frame>
            <third_frame>   P  *  K  P  S  T  V  I  S  T  A  H  F  V  S  L  L  I  R  I  R  R  K  I  S  S  *  I  T  L  F  S  T  L  L  Q  Y  I  L  S  D  I  R :   N  *  R  V  E  W  *  L  W  I  Y  F  S  *  T  C  V  L  K  N  S  L  D  S  V  I  V  I  L  I  S  W  *  P  I  V  *  E  N  F  *  D  L  Q  S  F  S  S  M  D  L  *  T  L  L  F  L  L  R  F  S  G  L  S  I  R  *  *  V  I  V  E  F  D  R  I  G  Y  W  L  C  *  K  *  L  L  F  L  S  I  G  I  K  T  I  W  K  V  G  H  M  A  L  L  D  L  G  H  L  V  H  L  P  L  V  G  S  W  R  *  I  V  G  L  L  S  P  G  Q  V  Y  I  I  P  N  R  S  L  A  R  N  L  S  S  N  G  P  S  R  V  P  Y  L  P  K  R  D  H  L  *  H  H  C  L  L  I  L  S  S  L  I  L  K  I  K  R  N  Q  E  K  Q  P  K  I  S  W  F  R  Y  H  L  T  S  K  W  M  *  V  L  G  M  R  V  P  *  M  M  S  Y  R  F  L  N  Y  G  L  G  Q  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2921" stop="3364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRLLALLKMIVVPQHRDQNYLESRAHGPTRFGSFGSPPSGGFMEVNCRAFESRAGLYHTKSKSCKKPVIKRALTGSLSPKTRPPLTSLPVNTVKSHSEDQKKSGKTAQNFMVSIPFNLKVDVGSRNEGSLNDELPFSELWAGPAYSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3398" PGL_stop="5681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3398" e_stop="4628"/>
            <exon e_start="4750" e_stop="5003"/>
            <exon e_start="5656" e_stop="5681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.415" e_score="0.992"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3398" e_stop="4628" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4629" i_stop="4749" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="4750" e_stop="5003" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.415">
            <gDNA_intron_boundary i_start="5004" i_stop="5655" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="5656" e_stop="5681" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3398" stop="4628"/>
              <exon start="4750" stop="5003"/>
              <exon start="5656" stop="5681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG : CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTA : AATTAACACAACCACCTGATTGTCGA</gDNA_template>
            <first_frame> F  F  L  R  P  K  R  N  A  S  L  E  F  P  T  S  A  C  D  I  H  L  R  P  I  A  K  S  A  P  A  S  P  T  R  E  S  S  L  S  P  G  I  V  F  D  N  T  D  S  V  T  Q  T  L  R  R  M  L  N  L  E  T  N  A  Q  I  L  L  E  T  N  D  G  *  M  C  G  G  S  S  E  *  Q  L  T  R  V  L  F  S  F  R  I  G  *  *  *  I  V  R  M  V  N  N  S  V  F  S  *  *  V  T  V  S  L  S  V  C  H  G  R  S  V  V  K  L  Q  H  L  S  R  L  V  I  L  R  G  I  Q  Y  E  Q  W  L  V  D  R  Y  S  P  G  I  F  K  V  R  A  V  M  V  R  L  *  G  V  Q  Q  M  E  Y  V  C  A  S  N  S  G  R  R  I  *  V  M  S  E  M  L  L  L  H  Y  S  N  R  *  L  V  V  L  C  R  G  C  V  T  C  C  S  T  I  F  A  A  L  E  M  N  L  L  *  P  S  I  V  I  L  D  S  S  V  V  G  L  F  I  A  S  S  C  S  F  D  V  L  *  I  G  D  I  V  Y  I  L  D  P  T  R  L  A  S  L  *  T  S  G  L  F  S  Y  *  I  L  A  F  S  S  N  S  A  S  *  P  S  L  F  L  S  R  F  K  F  L  T  R  K  *  D  I  W  Y  I  *  V  L  A  I  P  *  M  P  E  W  A  G  H  H  H  N  F  V  C  I  L  F  S  T  L  N  R  I  Y  V  L  L  L  P  L  E  V  V  S  P  *  P  I  F  C  F  L  G  M  K  I  G  *  G  N  Y  *  S  V  V  S  F  S  V  P  G  I  R  I  F  P  F  S  F  P  F  A  S  P  I  M  L  V  K  R  F  I  P  S  P  K  R  K  S  S  C  L  R  R  L  V  I  T  S  Y  *  *   : A  L  L  V  G  A  V  G  R  R  L  L  S  G  C  S  P  Y  S  L  L  S  P  W  *  H  Y  S  L  Y  V  I  S  V  S  L  *  D  V  V  C  R  S  F  D  Q  T  G  S  Y  Y  C  S  N  Y  L  V  M  S  C  F  R  F  W  S  F  T  F  V  V  E  L  V  D  F  K  V  A  F  *  L  R  L  Q  L  :  N  *  H  N  H  L  I  V   </first_frame>
            <second_frame>  F  F  S  G  L  K  G  M  P  L  L  S  F  L  L  Q  H  V  I  F  I  Y  V  P  L  P  S  L  H  Q  H  L  Q  P  G  R  A  V  F  L  R  E  L  C  L  T  I  L  T  Q  *  H  R  L  F  V  A  C  S  T  L  K  L  M  P  K  F  S  L  K  L  M  M  D  E  C  V  V  G  V  L  N  S  S  *  L  G  Y  Y  L  V  F  V  L  G  N  S  R  *  F  V  W  *  I  I  Q  F  L  V  S  K  L  L  F  R  L  V  F  V  M  V  D  Q  *  *  S  C  N  I  C  Q  D  W  L  F  *  G  E  F  N  M  N  N  G  *  L  I  D  T  L  L  V  Y  S  K  F  V  Q  S  W  L  D  Y  E  G  F  N  K  W  S  M  F  V  H  R  T  V  E  E  E  S  E  *  *  V  R  C  S  Y  Y  I  T  V  I  D  S  L  *  F  F  V  E  V  A  *  L  V  A  Q  L  S  L  L  P  W  R  *  I  C  Y  N  H  Q  L  S  F  L  I  P  V  S  W  D  C  L  L  P  L  H  V  L  L  M  F  C  K  S  E  I  L  Y  I  S  *  T  L  P  D  *  H  P  F  R  L  L  V  Y  S  V  T  R  S  *  P  F  H  P  I  L  H  P  N  H  L  Y  F  L  V  D  S  N  S  *  L  G  N  R  T  F  G  I  S  K  S  L  L  F  L  E  C  L  N  G  L  V  I  I  I  T  L  Y  V  F  S  S  Q  L  *  I  G  Y  M  S  Y  F  F  L  L  K  L  F  P  L  D  Q  F  S  V  F  W  E  *  K  L  G  R  E  I  I  S  Q  L  Y  P  F  L  F  L  V  F  V  S  S  L  L  A  F  L  L  P  V  Q  L  C  *  L  R  G  L  F  L  H  Q  K  E  N  H  L  A  *  G  D  W  *  S  L  A  T  D  K  :  R  F  *  L  E  L  L  E  E  D  C  *  A  V  V  L  P  T  L  Y  S  R  H  G  S  T  T  R  Y  M  S  F  Q  C  L  Y  K  M  L  S  V  G  H  S  T  K  L  V  V  T  T  A  V  I  I  *  L  C  H  V  L  G  F  G  V  L  L  L  L  L  N  L  L  I  L  R  W  H  F  D  Y  D  F  N  * :   I  N  T  T  T  *  L  S  </second_frame>
            <third_frame>   F  S  Q  A  *  K  E  C  L  S  *  V  S  Y  F  S  M  *  Y  S  F  T  S  H  C  Q  V  C  T  S  I  S  N  Q  G  E  Q  S  F  S  G  N  C  V  *  Q  Y  *  L  S  D  T  D  S  S  S  H  A  Q  P  *  N  *  C  P  N  S  P  *  N  *  *  W  M  N  V  W  W  E  F  *  I  A  V  N  *  G  I  I  *  F  S  Y  W  V  I  V  D  S  S  Y  G  E  *  F  S  F  *  L  V  S  Y  C  F  A  *  C  L  S  W  *  I  S  S  E  V  A  T  S  V  K  I  G  Y  F  K  G  N  S  I  *  T  M  A  S  *  S  I  L  S  W  Y  I  Q  S  S  C  S  H  G  *  T  M  R  G  S  T  N  G  V  C  L  C  I  E  Q  W  K  K  N  L  S  D  E  *  D  A  P  I  T  L  Q  *  *  I  A  C  S  S  L  *  R  L  R  N  L  L  L  N  Y  L  C  C  P  G  D  E  F  V  I  T  I  N  C  H  S  *  F  Q  C  R  G  I  V  Y  C  L  F  M  F  F  *  C  S  V  N  R  R  Y  C  I  Y  L  R  P  Y  Q  I  S  I  P  L  D  F  W  F  I  Q  L  L  D  L  S  L  F  I  Q  F  C  I  L  T  I  S  I  S  *  *  I  Q  I  L  D  *  E  I  G  H  L  V  Y  L  S  P  C  Y  S  L  N  A  *  M  G  W  S  S  S  *  L  C  M  Y  S  L  L  N  S  E  *  D  I  C  P  T  S  S  S  *  S  C  F  P  L  T  N  F  L  F  F  G  N  E  N  W  V  G  K  L  L  V  S  C  I  L  F  C  S  W  Y  S  Y  L  P  F  *  L  S  F  C  Q  S  N  Y  A  S  *  E  V  Y  S  F  T  K  K  K  I  I  L  P  K  E  I  G  D  H  *  L  L  I  S :   A  F  S  W  S  C  W  K  K  I  V  E  R  L  F  S  L  L  S  T  L  A  M  V  A  L  L  V  I  C  H  F  S  V  S  I  R  C  C  L  *  V  I  R  P  N  W  *  L  L  L  Q  *  L  S  S  Y  V  M  F  *  V  L  E  F  Y  F  C  C  *  T  C  *  F  *  G  G  I  L  I  T  T  S  I   : K  L  T  Q  P  P  D  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3398" stop="3622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLRPKRNASLEFPTSACDIHLRPIAKSAPASPTRESSLSPGIVFDNTDSVTQTLRRMLNLETNAQILLETNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9597" PGL_stop="8527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9597" e_stop="9438"/>
            <exon e_start="8716" e_stop="8527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9597" e_stop="9438" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9437" i_stop="8717" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8716" e_stop="8527" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9597" stop="9438"/>
              <exon start="8716" stop="8527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG : TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</gDNA_template>
            <first_frame> S  S  K  L  Y  I  W  C  D  Q  K  T  *  T  S  T  L  V  D  L  S  V  L  L  K  T  A  F  F  V  L  F  S  E  R  N  Y  M  A  N  I  S  T  C  S  L  L  V  A  A  V  F  L   : V  G  I  L  M  I  P  S  E  I  L  G  E  T  C  Y  Q  I  H  P  E  I  L  C  D  E  G  K  V  E  G  E  C  L  P  F  C  N  D  K  F  G  S  S  A  G  G  Q  C  I  E  Q  I  G  F  D  G  P  F  C  A  C  D   </first_frame>
            <second_frame>  H  P  N  Y  I  F  G  V  T  K  K  H  K  Q  V  L  L  *  I  Y  L  S  S  *  K  L  L  F  L  F  C  F  Q  K  E  I  I  W  Q  I  F  L  L  A  P  F  S  L  L  L  F  F  *  :  L  E  Y  *  *  S  H  R  K  Y  W  E  K  H  A  I  K  Y  T  Q  R  Y  C  V  M  K  A  K  L  K  G  N  V  Y  L  S  A  M  T  N  L  D  P  L  L  V  D  N  A  L  S  K  L  A  L  M  V  L  F  V  H  V  I  </second_frame>
            <third_frame>   I  Q  I  I  Y  L  V  *  P  K  N  I  N  K  Y  S  C  R  F  I  C  P  L  K  N  C  F  F  C  F  V  F  R  K  K  L  Y  G  K  Y  F  Y  L  L  P  S  R  C  C  C  F  S  S :   W  N  I  D  D  P  I  G  N  I  G  R  N  M  L  S  N  T  P  R  D  I  V  *  *  R  Q  S  *  R  G  M  F  T  F  L  Q  *  Q  I  W  I  L  C  W  W  T  M  H  *  A  N  W  L  *  W  S  F  L  C  M  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9558" stop="9438"/>
                    <exon start="8716" stop="8529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTLVDLSVLLKTAFFVLFSERNYMANISTCSLLVAAVFLVGILMIPSEILGETCYQIHPEILCDEGKVEGECLPFCNDKFGSSAGGQCIEQIGFDGPFCACD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16661" PGL_stop="13339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16661" e_stop="16552"/>
            <exon e_start="15725" e_stop="15389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.900"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="16661" e_stop="16552" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="15725" e_stop="15389" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16661" stop="16552"/>
              <exon start="15725" stop="15389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</gDNA_template>
            <first_frame> N  S  Q  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L  *  V  Y  I  *  F  I  *  N  F  P  V  I  F  L  I  F  F  S  H  F  F  G  K  D  F  V  C  T  C  V  F  C  I  V  Y  E  L  I  I  I  Y  T  T  V  S  A  N  V  H  L  M  A  S  S  C  *  L  *  N  F  *  N  T  L  S  C  F  S  V  E  D  I  R  G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N </first_frame>
            <second_frame>  I  P  K  S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G  C  E  F  I  F  S  S  Y  K  T  F  L  *  Y  F  *  S  F  S  L  T  F  L  G  K  I  L  C  A  H  V  S  F  V  *  F  M  S  *  *  *  F  I  L  L  F  L  P  M  F  I  *  W  Q  V  V  V  D  S  R  I  S  E  T  L  Y  L  V  S  L  L  R  I  S  E  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G   </second_frame>
            <third_frame>   F  P  N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  V  S  L  Y  L  V  H  I  K  L  S  C  N  I  S  D  L  F  L  S  L  F  W  E  R  F  C  V  H  M  C  L  L  Y  S  L  *  V  N  N  N  L  Y  Y  C  F  C  Q  C  S  F  D  G  K  *  L  L  T  L  E  F  L  K  H  F  I  L  F  L  C  *  G  Y  Q  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16659" stop="16552"/>
                    <exon start="15725" stop="15552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEAVSLYLVHIKLSCNISDLFLSLFWERFCVHMCLLYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16653" e_stop="16552"/>
            <exon e_start="15725" e_stop="15663"/>
            <exon e_start="15440" e_stop="15324"/>
            <exon e_start="15240" e_stop="14962"/>
            <exon e_start="14804" e_stop="14691"/>
            <exon e_start="14399" e_stop="14327"/>
            <exon e_start="14194" e_stop="14128"/>
            <exon e_start="13597" e_stop="13339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.031" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="16653" e_stop="16552" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16551" i_stop="15726" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15725" e_stop="15663" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.031">
            <gDNA_intron_boundary i_start="15662" i_stop="15441" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15440" e_stop="15324" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15323" i_stop="15241" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15240" e_stop="14962" e_length="279"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14961" i_stop="14805" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14804" e_stop="14691" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14690" i_stop="14400" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14399" e_stop="14327" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14326" i_stop="14195" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14128" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14127" i_stop="13598" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="13597" e_stop="13339" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16653" stop="16552"/>
              <exon start="15725" stop="15663"/>
              <exon start="15440" stop="15324"/>
              <exon start="15240" stop="14962"/>
              <exon start="14804" stop="14691"/>
              <exon start="14399" stop="14327"/>
              <exon start="14194" stop="14128"/>
              <exon start="13597" stop="13339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT : AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  :  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </first_frame>
            <second_frame>  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L :   G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </second_frame>
            <third_frame>   S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G   : *  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16653" stop="16552"/>
                    <exon start="15725" stop="15663"/>
                    <exon start="15440" stop="15324"/>
                    <exon start="15240" stop="14962"/>
                    <exon start="14804" stop="14691"/>
                    <exon start="14399" stop="14327"/>
                    <exon start="14194" stop="14157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEARVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13591" stop="13340"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17618" PGL_stop="19158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17618" e_stop="17812"/>
            <exon e_start="18585" e_stop="19158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17618" e_stop="17812" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17813" i_stop="18584" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="18585" e_stop="19158" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17618" stop="17812"/>
              <exon start="18585" stop="19158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG : GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCTGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</gDNA_template>
            <first_frame> F  S  V  *  P  L  E  F  A  N  T  I  G  G  W  L  L  *  R  N  P  R  K  I  L  T  S  *  R  K  S  K  P  K  T  R  K  T  T  L  F  L  L  R  T  K  E  L  N  A  I  G  G  I  V  S  G  T  R  I  K  H  Q  P  Q  :  V  L  V  Y  L  V  M  K  R  K  V  S  S  I  F  S  V  F  P  T  R  L  L  I  T  Y  V  H  L  *  G  R  T  L  S  Q  D  L  L  Q  V  *  *  T  L  R  E  D  F  L  V  L  R  S  K  L  R  L  H  *  E  D  W  L  L  V  N  P  K  F  Q  L  G  H  H  L  G  L  G  S  P  L  C  L  R  L  P  G  D  S  L  R  H  W  K  N  V  Q  S  T  I  L  S  G  Q  N  L  V  R  W  I  *  S  S  L  S  L  N  N  H  L  V  C  L  T  V  V  E  Q  L  M  Q  L  T  S  *  *  L  F  L  L  F  K  P  Q  M  I  G  V  I  R  K  A  I  T  A  C  F  C  K  V  L  W  T  A  R  C  V  F  *  T  *  *  Q  D  G  L  G  A  *  P  L  Q  G  C  S  S  A  L  D  F  </first_frame>
            <second_frame>  F  R  C  N  H  *  S  L  L  T  Q  L  V  D  G  S  S  K  E  I  Q  E  R  F  *  Q  V  E  E  N  Q  S  Q  K  Q  E  K  Q  H  C  S  C  *  E  Q  R  N  *  M  R  L  V  G  *  F  L  A  Q  E  *  N  I  N  P  R :   F  W  C  T  *  *  *  R  G  R  F  Q  V  F  F  P  C  F  Q  Q  D  F  *  L  H  M  F  T  C  K  G  G  P  Y  L  K  T  S  F  R  S  D  K  H  *  G  K  T  S  *  C  *  E  A  S  C  D  C  I  E  K  I  G  F  W  *  I  P  S  F  S  W  G  I  I  W  G  W  A  V  H  C  V  S  G  Y  L  E  I  H  *  G  T  G  R  T  C  K  A  P  S  *  V  A  R  T  *  *  D  G  Y  N  Q  V  *  V  *  T  I  I  W  F  A  *  L  L  W  S  N  *  C  N  S  H  H  N  D  S  S  C  Y  S  N  L  R  *  L  V  *  S  G  K  Q  L  Q  H  A  F  A  R  Y  C  G  Q  R  D  A  F  F  R  H  S  D  R  M  A  W  G  H  D  H  F  K  A  V  Q  V  L  W  I  L </second_frame>
            <third_frame>   F  G  V  T  I  R  V  C  *  H  N  W  W  M  A  P  L  K  K  S  K  K  D  S  N  K  L  K  K  I  K  A  K  N  K  K  N  N  I  V  P  A  E  N  K  G  T  E  C  D  W  W  D  S  F  W  H  K  N  K  T  S  T  P   : G  S  G  V  P  S  D  E  E  E  G  F  K  Y  F  F  R  V  S  N  K  T  F  D  Y  I  C  S  L  V  R  E  D  L  I  S  R  P  P  S  G  L  I  N  I  E  G  R  L  L  S  V  E  K  Q  V  A  I  A  L  R  R  L  A  S  G  E  S  Q  V  S  V  G  A  S  F  G  V  G  Q  S  T  V  S  Q  V  T  W  R  F  I  E  A  L  E  E  R  A  K  H  H  L  K  W  P  E  P  S  K  M  D  I  I  K  S  E  F  E  Q  S  F  G  L  P  N  C  C  G  A  I  D  A  T  H  I  I  M  T  L  P  A  I  Q  T  S  D  D  W  C  D  Q  E  S  N  Y  S  M  L  L  Q  G  I  V  D  S  E  M  R  F  L  D  I  V  T  G  W  P  G  G  M  T  T  S  R  L  F  K  C  S  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17647" stop="17812"/>
                    <exon start="18585" stop="19156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNWWMAPLKKSKKDSNKLKKIKAKNKKNNIVPAENKGTECDWWDSFWHKNKTSTPGSGVPSDEEEGFKYFFRVSNKTFDYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGASFGVGQSTVSQVTWRFIEALEERAKHHLKWPEPSKMDIIKSEFEQSFGLPNCCGAIDATHIIMTLPAIQTSDDWCDQESNYSMLLQGIVDSEMRFLDIVTGWPGGMTTSRLFKCSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="23594" PGL_stop="21932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23594" e_stop="23520"/>
            <exon e_start="23209" e_stop="23093"/>
            <exon e_start="22966" e_stop="22840"/>
            <exon e_start="22618" e_stop="22332"/>
            <exon e_start="22249" e_stop="22059"/>
            <exon e_start="21949" e_stop="21932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23594" e_stop="23520" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23519" i_stop="23210" i_length="310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23209" e_stop="23093" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="23092" i_stop="22967" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22966" e_stop="22840" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22839" i_stop="22619" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22618" e_stop="22332" e_length="287"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22331" i_stop="22250" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22249" e_stop="22059" e_length="191"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22058" i_stop="21950" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21949" e_stop="21932" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23594" stop="23520"/>
              <exon start="23209" stop="23093"/>
              <exon start="22966" stop="22840"/>
              <exon start="22618" stop="22332"/>
              <exon start="22249" stop="22059"/>
              <exon start="21949" stop="21932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG : ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT : GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG : GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT : GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG : GATCTCAAGGTGGATTGA</gDNA_template>
            <first_frame> A  P  L  T  S  V  I  L  G  T  I  L  V  Y  I  T  H  A  E  K  H  G  V  A  V  :  I  G  E  L  K  K  G  I  N  P  P  S  I  M  D  L  S  F  G  S  K  Y  M  T  T  A  I  K  T  G  I  V  T  G  V  I  A  L  A  :  E  G  I  A  V  G  R  S  F  A  M  F  K  N  Y  H  I  D  G  N  K  E  M  I  A  F  G  M  M  N  I  V  G  S  C  T  S  C  Y  L  T  T   : G  P  F  S  R  S  A  V  N  F  N  A  G  C  K  T  A  V  S  N  I  V  M  A  L  A  V  M  V  T  L  L  L  L  T  P  L  F  H  F  T  P  L  V  V  L  S  S  I  I  I  A  A  M  L  G  L  I  D  Y  N  A  A  I  H  L  W  H  V  D  K  F  D  F  L  V  C  M  S  A  Y  I  G  V  V  F  G  N  I  E  I  G  L  V  M  A  :  V  G  L  S  L  L  R  V  L  L  S  V  A  R  P  R  T  L  V  L  G  N  I  P  N  S  M  I  Y  R  N  V  E  Q  Y  P  N  T  N  N  V  P  G  V  L  I  L  D  I  G  A  P  I  F  F  T  N  S  S  Y  L  R  E  R :   I  S  R  W  I   </first_frame>
            <second_frame>  R  H  *  R  L  S  Y  W  E  R  F  S  F  I  *  R  M  L  K  N  T  V  L  L  * :   L  E  S  *  R  K  G  *  I  H  H  Q  *  W  I  C  R  L  D  R  N  I  *  Q  R  L  S  K  L  A  *  S  R  V  S  L  P  L  L :   K  E  *  Q  *  V  E  V  L  Q  C  S  R  I  T  I  *  M  V  T  K  R  *  L  L  L  G  *  *  T  L  L  A  H  A  L  L  V  T  S  L  L  :  G  H  S  R  D  Q  Q  *  T  S  M  L  D  A  K  Q  Q  Y  Q  T  L  S  W  R  W  L  *  W  *  R  C  Y  C  *  R  H  C  S  T  S  L  L  S  S  C  C  H  P  L  L  L  L  P  C  S  D  S  S  T  I  M  L  P  F  I  S  G  M  S  T  N  S  T  S  S  F  A  *  V  H  T  L  V  L  S  L  A  T  L  K  L  A  *  S  W  L :   L  A  Y  R  C  *  G  Y  Y  F  L  *  Q  G  Q  G  L  *  Y  L  V  I  F  P  I  L  *  S  T  E  M  W  S  N  I  Q  I  Q  T  T  F  Q  A  F  S  Y  L  T  L  E  L  L  F  S  S  L  T  Q  A  I  *  E  R   : G  S  Q  G  G  L  </second_frame>
            <third_frame>   A  I  D  V  C  H  I  G  N  D  S  R  L  Y  N  A  C  *  K  T  R  C  C  C   : D  W  R  A  E  E  R  D  K  S  T  I  N  N  G  S  V  V  W  I  E  I  Y  D  N  G  Y  Q  N  W  H  S  H  G  C  H  C  P  C   : *  R  N  S  S  R  S  K  F  C  N  V  Q  E  L  P  Y  R  W  *  Q  R  D  D  C  F  W  D  D  E  H  C  W  L  M  H  F  L  L  P  H  Y  W :   A  I  L  A  I  S  S  E  L  Q  C  W  M  Q  N  S  S  I  K  H  C  H  G  V  G  C  D  G  D  V  A  I  A  N  A  I  V  P  L  H  S  S  R  R  V  V  I  H  Y  Y  C  C  H  A  R  T  H  R  L  *  C  C  H  S  S  L  A  C  R  Q  I  R  L  P  R  L  H  E  C  I  H  W  C  C  L  W  Q  H  *  N  W  L  S  H  G   : C  W  L  I  V  A  K  G  I  T  F  C  S  K  A  K  D  F  S  T  W  *  Y  S  Q  F  Y  D  L  Q  K  C  G  A  I  S  K  Y  K  Q  R  S  R  R  S  H  T  *  H  W  S  S  Y  F  L  H  *  L  K  L  F  K  R  E  :  D  L  K  V  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23594" stop="23520"/>
                    <exon start="23209" stop="23093"/>
                    <exon start="22966" stop="22840"/>
                    <exon start="22618" stop="22332"/>
                    <exon start="22249" stop="22059"/>
                    <exon start="21949" stop="21934"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLTSVILGTILVYITHAEKHGVAVIGELKKGINPPSIMDLSFGSKYMTTAIKTGIVTGVIALAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMALAVMVTLLLLTPLFHFTPLVVLSSIIIAAMLGLIDYNAAIHLWHVDKFDFLVCMSAYIGVVFGNIEIGLVMAVGLSLLRVLLSVARPRTLVLGNIPNSMIYRNVEQYPNTNNVPGVLILDIGAPIFFTNSSYLRERISRWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36833" PGL_stop="35394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36833" e_stop="36563"/>
            <exon e_start="36483" e_stop="36370"/>
            <exon e_start="36300" e_stop="36143"/>
            <exon e_start="36065" e_stop="35394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36833" e_stop="36563" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36562" i_stop="36484" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36483" e_stop="36370" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="36369" i_stop="36301" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36300" e_stop="36143" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36142" i_stop="36066" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="36065" e_stop="35394" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36833" stop="36563"/>
              <exon start="36483" stop="36370"/>
              <exon start="36300" stop="36143"/>
              <exon start="36065" stop="35394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA : CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG : GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG : TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</gDNA_template>
            <first_frame> Y  C  K  M  W  Q  Q  T  W  N  T  P  Y  R  K  D  D  V  E  G  G  A  R  P  L  Y  P  A  M  L  E  N  P  Q  L  R  W  G  F  I  R  K  V  Y  S  I  L  S  L  Q  L  L  I  T  I  A  V  G  A  V  V  V  T  V  H  P  I  A  H  F  F  V  S  T  G  A  G  L  A  L  Y  I  L  L  I  I  A  P  F  I   : T  L  S  P  L  Y  Y  Y  H  Q  K  H  P  V  N  F  L  L  L  G  L  F  T  V  T  L  A  F  A  V  G  L  T  C  A  F  T  S   : G  K  V  I  L  E  S  V  I  L  T  A  A  V  V  L  S  L  T  I  Y  T  F  W  A  A  R  R  G  H  D  F  N  F  L  G  P  F  L  F  G  A  L  M  V  L  M  L  F  A  F  I  Q  :  L  L  F  P  L  G  R  L  S  V  M  I  Y  G  C  L  A  S  I  L  F  C  A  Y  I  I  Y  D  T  D  S  L  I  K  R  Y  T  Y  D  E  Y  I  W  A  A  V  G  L  Y  L  D  V  I  N  L  F  L  S  I  L  T  I  F  R  A  A  E  *  F  P  *  Q  I  N  N  K  N  V  T  F  A  L  *  R  T  L  F  I  Y  C  I  N  Q  *  F  F  L  L  R  N  S  L  L  V  F  V  R  L  M  D  M  *  V  T  K  S  *  *  L  K  Y  Y  I  V  *  R  G  Y  I  C  K  T  F  A  L  W  G  K  V  E  I  Y  S  S  R  K  K  E  V  *  V  N  Q  P  Y  F  S  A  *  I  Q  I  W  L  L  F  W  Q  Q  F  Y  L  K  Q  N  S  Y  W  A  L  S  L  M  S  W  K  V  R  S  W  A  S  T  S  R  C  T  W  E  K  S  Q  S  L  W  V  Y  Y  S  S  T  S  Y  I  D  R  L  R  M  N  V  F  F  E </first_frame>
            <second_frame>  I  V  R  C  G  S  R  R  G  I  R  L  T  G  K  M  T  W  K  A  E  Q  G  R  C  I  R  R  C  W  R  I  H  N  S  V  G  V  L  F  G  K  F  T  Q  F  C  L  Y  S  C  L  *  Q  L  Q  W  A  L  L  L  L  R  F  T  Q  L  H  I  F  L  C  Q  L  G  L  D  *  L  S  I  F  F  L  S  S  L  P  S  S  :  H  *  A  R  C  I  T  I  T  R  N  I  R  *  I  S  C  F  L  G  C  L  Q  L  L  W  P  S  L  *  D  *  L  V  P  S  P  V  :  G  K  *  Y  W  S  P  S  Y  *  P  Q  Q  L  C  L  V  *  P  Y  T  H  F  G  Q  Q  G  E  A  T  I  L  I  S  L  D  H  S  Y  L  V  P  L  W  F  S  C  C  L  P  L  F  S :   Y  C  F  L  W  V  G  S  L  *  *  S  M  A  V  *  R  P  F  C  S  A  H  I  *  F  M  I  R  I  V  *  S  S  A  T  L  T  M  S  T  S  G  L  L  S  D  C  I  W  T  L  S  I  Y  S  Y  L  Y  *  L  F  L  E  L  L  N  S  F  L  D  K  *  I  T  K  M  L  H  L  L  Y  K  E  H  C  L  S  I  V  *  I  N  N  F  F  Y  Y  E  T  R  C  *  Y  L  *  G  *  W  I  C  E  *  P  K  V  D  S  *  N  I  I  L  Y  K  G  V  I  S  A  K  H  L  P  F  G  A  K  L  K  Y  I  V  A  A  K  K  K  F  E  *  I  S  P  T  F  R  P  K  S  K  F  G  C  C  F  G  N  N  F  T  *  S  K  T  H  I  G  L  C  H  S  C  L  G  K  S  D  L  G  L  Q  L  A  G  V  L  G  K  N  P  K  V  C  G  C  T  I  V  R  L  H  I  *  T  D  *  E  *  T  F  S  L   </second_frame>
            <third_frame>   L  *  D  V  A  A  D  V  E  Y  A  L  P  E  R  *  R  G  R  R  S  K  A  V  V  S  G  D  V  G  E  S  T  T  P  L  G  F  Y  S  E  S  L  L  N  F  V  S  T  V  A  Y  N  N  C  S  G  R  C  C  C  Y  G  S  P  N  C  T  F  F  C  V  N  W  G  W  I  S  S  L  Y  S  S  Y  H  R  S  L  H  H :   I  E  P  V  V  L  L  S  P  E  T  S  G  E  F  L  A  S  W  V  V  Y  S  Y  S  G  L  R  C  R  I  N  L  C  L  H  Q  W :   E  S  N  I  G  V  R  H  I  N  R  S  S  C  A  *  F  D  H  I  H  I  L  G  S  K  E  R  P  R  F  *  F  P  W  T  I  L  I  W  C  P  Y  G  S  H  V  V  C  L  Y  S   : V  T  V  S  S  G  *  A  L  C  D  D  L  W  L  F  S  V  H  F  V  L  R  I  Y  N  L  *  Y  G  *  F  N  Q  A  L  H  L  R  *  V  H  L  G  C  C  R  T  V  S  G  R  Y  Q  S  I  L  I  Y  I  D  Y  F  *  S  C  *  I  V  S  L  T  N  K  *  Q  K  C  Y  I  C  S  I  K  N  I  V  Y  L  L  Y  K  S  I  I  F  F  I  T  K  L  V  V  S  I  C  K  V  D  G  Y  V  S  D  Q  K  L  I  A  E  I  L  Y  C  I  K  G  L  Y  L  Q  N  I  C  P  L  G  Q  S  *  N  I  *  *  P  Q  K  R  S  L  S  E  S  A  L  L  F  G  L  N  P  N  L  V  A  V  L  A  T  I  L  L  E  A  K  L  I  L  G  F  V  T  H  V  L  E  S  Q  I  L  G  F  N  *  Q  V  Y  L  G  K  I  P  K  F  V  G  V  L  *  F  D  F  I  Y  R  Q  I  E  N  E  R  F  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36833" stop="36563"/>
                    <exon start="36483" stop="36370"/>
                    <exon start="36300" stop="36143"/>
                    <exon start="36065" stop="35862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKMWQQTWNTPYRKDDVEGGARPLYPAMLENPQLRWGFIRKVYSILSLQLLITIAVGAVVVTVHPIAHFFVSTGAGLALYILLIIAPFITLSPLYYYHQKHPVNFLLLGLFTVTLAFAVGLTCAFTSGKVILESVILTAAVVLSLTIYTFWAARRGHDFNFLGPFLFGALMVLMLFAFIQLLFPLGRLSVMIYGCLASILFCAYIIYDTDSLIKRYTYDEYIWAAVGLYLDVINLFLSILTIFRAAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35588" stop="35394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLLFWQQFYLKQNSYWALSLMSWKVRSWASTSRCTWEKSQSLWVYYSSTSYIDRLRMNVFFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35841" stop="35647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKCYICSIKNIVYLLYKSIIFFITKLVVSICKVDGYVSDQKLIAEILYCIKGLYLQNICPLGQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43837" PGL_stop="44501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43837" e_stop="44501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43837" e_stop="44501" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43837" stop="44501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</gDNA_template>
            <first_frame> S  E  T  E  V  G  D  A  H  Q  I  S  A  Y  V  L  K  C  S  E  A  T  S  C  C  S  V  R  I  V  A  *  S  V  M  M  V  A  L  G  T  I  S  V  K  L  P  Y  L  S  R  F  V  C  N  V  N  E  D  R  I  S  E  K  *  W  S  S  H  E  T  F  F  A  F  R  I  T  A  S  R  P  L  Q  Y  *  F  *  A  A  A  F  P  C  *  W  N  H  S  Q  *  S  C  L  L  G  I  I  R  P  I  L  L  L  G  A  G  D  K  P  A  E  L  H  D  I  E  C  E  W  V  M  L  S  D  D  P  *  R  L  K  *  A  F  L  F  R  C  L  I  E  I  T  *  L  K  A  *  F  L  L  Q  V  C  H  F  S  Y  L  L  T  R  T  A  L  Q  D  T  A  H  A  K  K  Y  W  E  R  I  V  F  S  S  T  Y  V  S  F  P  L  Y  N  T  Y  L  S  P  V  K  S  E  V  Q  D  H  D  S  T  C  M  I  I   </first_frame>
            <second_frame>  R  K  L  R  L  G  M  R  T  R  F  L  L  M  S  *  N  V  R  R  P  H  H  V  V  V  Y  G  *  L  H  E  V  *  *  W  *  H  L  G  Q  Y  L  *  N  C  L  I  Y  L  G  L  S  V  M  *  M  K  I  E  L  V  R  N  S  G  Q  V  M  K  P  F  L  L  F  V  *  Q  L  V  A  L  F  N  I  D  F  R  L  Q  H  F  P  V  D  G  T  I  L  N  D  L  A  Y  L  E  L  Y  V  Q  F  C  C  W  E  L  E  T  N  Q  R  N  C  M  T  *  N  V  N  G  S  C  S  L  M  I  L  D  V  *  N  K  L  S  C  S  V  V  *  S  K  *  R  D  *  R  L  N  F  F  F  K  F  V  I  S  A  I  Y  *  L  G  L  H  C  R  I  L  H  M  R  R  S  I  G  K  E  L  S  S  P  L  L  M  F  L  S  L  Y  I  I  P  T  F  L  L  *  N  L  K  F  K  I  M  I  A  H  V  *  L  S  </second_frame>
            <third_frame>   G  N  *  G  W  G  C  A  P  D  F  C  L  C  L  E  M  F  G  G  H  I  M  L  *  C  T  D  S  C  M  K  C  D  D  G  S  T  W  D  N  I  C  E  T  A  L  S  I  *  V  C  L  *  C  K  *  R  *  N  *  *  E  I  V  V  K  S  *  N  L  F  C  F  S  Y  N  S  *  S  P  S  S  I  L  I  L  G  C  S  I  S  L  L  M  E  P  F  S  M  I  L  L  T  W  N  Y  T  S  N  F  V  A  G  S  W  R  Q  T  S  G  T  A  *  H  R  M  *  M  G  H  A  L  *  *  S  L  T  F  K  I  S  F  P  V  P  L  F  D  R  N  N  V  I  E  G  L  I  S  S  S  S  L  S  F  Q  L  F  I  D  *  D  C  I  A  G  Y  C  T  C  E  E  V  L  G  K  N  C  L  L  L  Y  L  C  F  F  P  F  I  *  Y  L  P  F  S  C  K  I  *  S  S  R  S  *  *  H  M  Y  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0028D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53329" PGL_stop="50642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53329" e_stop="53306"/>
            <exon e_start="53095" e_stop="52963"/>
            <exon e_start="51460" e_stop="50908"/>
            <exon e_start="50652" e_stop="50642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.486" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.444" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53329" e_stop="53306" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.486" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53305" i_stop="53096" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53095" e_stop="52963" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51460" e_stop="50908" e_length="553"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.444">
            <gDNA_intron_boundary i_start="50907" i_stop="50653" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="50652" e_stop="50642" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53329" stop="53306"/>
              <exon start="53095" stop="52963"/>
              <exon start="51460" stop="50908"/>
              <exon start="50652" stop="50642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53062" stop="52963"/>
              <exon start="51460" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAAAATTTAGCAGAAAATCAG : TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG : ATCAAAGAAAA</gDNA_template>
            <first_frame> W  E  N  L  A  E  N  Q  :  F  S  N  K  E  N  G  R  K  R  R  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *  S  E  E  N  H  S  Q  A  L  A  T  G  H  S  W  R  *  G  T  *  H  P  Y  Q  R  Y  Y  C  W  W  W  C  H  P  S  H  S  Q  V  P  H  K  Q  N  H  Q  G  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R :   S  K  K  </first_frame>
            <second_frame>  G  K  I  *  Q  K  I  S :   F  Q  I  R  K  M  A  G  K  G  G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *   : D  Q  R  K </second_frame>
            <third_frame>   G  K  F  S  R  K  S   : V  F  K  *  G  K  W  Q  E  K  E  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K  *  R  E  S  L  P  G  T  C  N  W  P  F  V  E  M  R  N  L  T  P  L  S  K  V  L  L  L  V  V  V  S  S  L  T  F  T  S  P  S  *  T  K  P  P  R  S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  :  I  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53316" stop="53306"/>
                    <exon start="53095" stop="52963"/>
                    <exon start="51460" stop="51164"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKISFQIRKMAGKGGKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53063" e_stop="52963"/>
            <exon e_start="51460" e_stop="51308"/>
            <exon e_start="51167" e_stop="50852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53063" e_stop="52963" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52962" i_stop="51461" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51460" e_stop="51308" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51307" i_stop="51168" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51167" e_stop="50852" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53063" stop="52963"/>
              <exon start="51460" stop="51308"/>
              <exon start="51167" stop="50852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53062" stop="52963"/>
              <exon start="51460" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA : GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</gDNA_template>
            <first_frame> G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K :   *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *  G  H  L  Y  C  Y  Q  G  I  K  N  V  M  *  D  D  L  Y  L </first_frame>
            <second_frame>  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *   : S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  V  I  C  I  V  I  K  E  L  R  M  *  C  R  M  I  F  I   </second_frame>
            <third_frame>   K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  :  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R  S  S  V  L  L  S  R  N  *  E  C  D  V  G  *  S  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53061" stop="52963"/>
                    <exon start="51460" stop="51308"/>
                    <exon start="51167" stop="51132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKFSCVILDVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53062" stop="52963"/>
                    <exon start="51460" stop="51339"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERASSGEDNSCSGCQQGERQEKTNFSFISCGFAVSSGKNSPSAQDQNLCPWQGWSNSSCLLCCNSGVPDCRGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="62923" PGL_stop="62640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62923" e_stop="62772"/>
            <exon e_start="62695" e_stop="62640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62923" e_stop="62772" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.871">
            <gDNA_intron_boundary i_start="62771" i_stop="62696" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62695" e_stop="62640" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62923" stop="62772"/>
              <exon start="62695" stop="62640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG : ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</gDNA_template>
            <first_frame> G  S  I  L  S  K  E  H  F  R  S  E  L  C  *  S  E  H  G  W  C  G  L  F  K  E  N  *  S  *  Y  L  Q  K  L  S  T  I  T  Q  G  F  R  E  H  V  Q  V  L  Y  * :   C  I  F  R  N  R  W  I  Q  R  M  *  L  Y  T  N  L  R  </first_frame>
            <second_frame>  V  R  S  Y  R  K  N  I  L  E  A  S  Y  V  K  V  S  M  D  G  A  A  Y  L  R  K  I  D  L  N  T  Y  K  S  Y  P  Q  L  L  K  A  L  E  N  M  F  K  C  S  I   : D  V  Y  S  E  T  D  G  Y  N  G  C  N  Y  I  P  T  Y  E </second_frame>
            <third_frame>   F  D  P  I  E  R  T  F  *  K  R  A  M  L  K  *  A  W  M  V  R  L  I  *  G  K  L  I  L  I  L  T  K  V  I  H  N  Y  S  R  L  *  R  T  C  S  S  A  L  L  :  M  Y  I  Q  K  Q  M  D  T  T  D  V  I  I  Y  Q  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62922" stop="62772"/>
                    <exon start="62695" stop="62640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSYRKNILEASYVKVSMDGAAYLRKIDLNTYKSYPQLLKALENMFKCSIDVYSETDGYNGCNYIPTYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65485" PGL_stop="66246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65485" e_stop="66246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="65485" e_stop="66246" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65485" stop="66246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</gDNA_template>
            <first_frame> H  I  D  S  S  T  S  S  I  E  K  S  F  F  L  I  H  S  T  K  K  L  E  T  I  Q  W  Q  T  T  K  D  A  C  N  L  L  T  G  *  K  C  T  H  S  I  H  F  D  F  H  L  K  K  R  K  V  D  I  L  L  V  K  I  *  P  *  V  S  K  W  Q  V  *  F  I  I  V  G  E  Y  S  W  S  S  F  F  S  F  S  S  Y  L  Y  *  Y  Y  Q  N  L  F  Y  N  L  F  S  N  Y  G  S  Q  *  Y  T  N  N  A  T  G  T  G  L  V  Y  K  H  S  T  T  A  L  R  N  P  L  S  L  L  V  I  W  L  Q  N  *  *  N  M  S  V  F  E  C  M  Y  I  R  I  R  E  R  T  N  F  T  L  *  V  Y  Y  L  W  A  E  *  I  R  N  L  D  P  F  R  A  I  R  K  T  F  A  M  R  M  I  F  H  T  H  K  I  C  A  Y  L  H  G  T  K  K  K  K  Q  I  T  S  G  N  S  L  S  T  P  Q  R  Q  G  Y  D  L  R  T  C  Y  H  T  *  I  P  L  V  R  L  H  *  H  V  V  R  *  Q  I  T  C  S </first_frame>
            <second_frame>  I  *  I  H  L  L  P  Q  L  K  N  L  S  F  *  F  I  P  L  K  N  *  K  P  S  N  G  K  Q  L  K  M  H  A  T  F  *  Q  D  E  N  A  L  T  L  F  I  L  I  S  I  *  R  K  E  K  L  T  F  F  W  S  K  Y  D  H  K  F  Q  N  G  K  F  S  L  L  L  *  G  N  T  V  G  A  V  S  L  A  F  L  L  T  Y  I  D  I  T  R  I  C  F  I  I  Y  S  L  I  M  A  H  N  N  T  L  T  M  R  Q  A  L  D  *  F  T  S  T  V  Q  Q  R  F  E  I  L  L  V  F  L  S  F  G  C  K  I  S  K  T  C  R  S  L  N  V  C  I  L  E  L  E  R  E  L  I  S  L  Y  E  F  I  T  C  G  L  N  K  S  G  T  L  I  L  L  E  P  S  G  R  R  L  Q  *  E  *  S  S  T  P  I  K  S  A  H  T  F  M  E  P  K  K  K  N  K  L  L  P  E  T  A  F  L  P  H  K  G  R  D  M  I  C  V  H  V  T  I  P  R  S  H  L  *  D  Y  T  S  M  L  L  D  N  K  L  L  V   </second_frame>
            <third_frame>   Y  R  F  I  Y  F  L  N  *  K  I  F  L  F  N  S  F  H  *  K  I  R  N  H  P  M  A  N  N  *  R  C  M  Q  P  S  N  R  M  K  M  H  S  L  Y  S  F  *  F  P  S  E  E  K  K  S  *  H  S  F  G  Q  N  M  T  I  S  F  K  M  A  S  L  V  Y  Y  C  R  G  I  Q  L  E  Q  F  L  *  L  F  F  L  P  I  L  I  L  P  E  F  V  L  *  F  I  L  *  L  W  L  T  I  I  H  *  Q  C  D  R  H  W  T  S  L  Q  A  Q  Y  N  S  A  S  K  S  S  *  S  S  C  H  L  A  A  K  L  V  K  H  V  G  L  *  M  Y  V  Y  *  N  *  R  E  N  *  F  H  F  M  S  L  L  P  V  G  *  I  N  P  E  P  *  S  F  *  S  H  Q  E  D  V  C  N  E  N  D  L  P  H  P  *  N  L  R  I  P  S  W  N  Q  K  K  K  T  N  Y  F  R  K  Q  P  F  Y  P  T  K  A  G  I  *  S  A  Y  M  L  P  Y  L  D  P  T  C  E  I  T  L  A  C  C  *  I  T  N  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65852" stop="66058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSTVQQRFEILLVFLSFGCKISKTCRSLNVCILELERELISLYEFITCGLNKSGTLILLEPSGRRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="70499" PGL_stop="68264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70499" e_stop="69676"/>
            <exon e_start="69426" e_stop="69325"/>
            <exon e_start="68580" e_stop="68436"/>
            <exon e_start="68356" e_stop="68264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.966" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70499" e_stop="69676" e_length="824"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.982">
            <gDNA_intron_boundary i_start="69675" i_stop="69427" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69426" e_stop="69325" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.900">
            <gDNA_intron_boundary i_start="69324" i_stop="68581" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68580" e_stop="68436" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.929">
            <gDNA_intron_boundary i_start="68435" i_stop="68357" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68356" e_stop="68264" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70499" stop="69822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69856" stop="69676"/>
              <exon start="69426" stop="69325"/>
              <exon start="68580" stop="68436"/>
              <exon start="68356" stop="68264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG : TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG : GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG : GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</gDNA_template>
            <first_frame> Q  T  T  E  N  S  R  A  I  L  P  P  F  I  F  T  H  L  L  P  Q  F  Y  L  H  I  S  L  S  P  P  A  S  F  R  L  T  M  A  D  P  K  F  I  Y  I  *  S  S  K  K  F  *  S  E  E  L  T  V  Q  F  F  L  D  P  P  I  D  G  E  I  E  M  Q  G  R  Q  P  H  P  H  T  T  T  P  I  S  E  V  I  L  P  K  R  G  K  K  R  G  S  Y  S  C  G  R  C  G  V  P  K  K  G  H  V  C  N  F  P  K  N  L  N  P  I  D  N  P  S  P  N  P  N  S  S  L  L  A  S  P  P  S  V  V  R  P  Q  P  P  P  P  L  P  Q  R  H  V  L  P  Q  L  R  R  A  L  S  F  D  D  V  D  V  N  D  S  P  G  S  D  D  E  G  D  F  S  D  L  D  N  E  S  D  R  V  G  S  G  S  G  I  G  T  L  P  S  S  C  L  W  E  V  F  K  R  L  P  P  P  A  L  L  S  S  A  R  V  C  K  G  W  L  E  S  S  R  R  I  W  K  S  A  V  E  L  R  L  R  V  P  V  N  A  Q  I  G  L  V  G  S  V  L  K  K  C  P  G  L  V  K  L  S  L  R  M  E  S :   D  I  D  A  T  M  L  A  C  I  A  F  S  C  P  K  L  D  S  M  E  I  L  M  C  N  T  S  V  N  R  I  T  G :   D  E  L  G  R  F  V  A  E  K  R  S  L  T  N  L  K  M  E  G  C  S  N  L  G  G  F  T  L  C  S  T  S  L  S  T  L  S  L  S  D  L  Y  C  H  A  K  M  :  V  F  N  C  P  N  L  K  D  V  S  L  D  F  S  H  Q  E  N  D  T  T  D  L  T  L  M  V  D  G  L </first_frame>
            <second_frame>  K  L  Q  K  T  P  A  P  F  S  H  L  L  F  L  L  I  S  Y  L  N  F  T  Y  T  F  H  C  R  R  R  Q  A  S  D  *  Q  W  R  I  L  N  L  Y  I  Y  K  A  L  K  N  S  D  R  K  N  S  L  Y  N  F  F  W  I  R  Q  L  T  A  K  S  R  C  R  A  V  N  P  I  P  T  P  P  L  L  Y  P  K  L  S  F  Q  S  V  A  R  S  G  V  A  T  V  V  A  D  A  V  Y  P  K  K  A  M  F  A  I  F  L  R  T  L  I  R  L  I  I  P  V  P  I  P  I  R  H  S  *  L  P  H  P  L  L  F  V  L  S  R  H  L  P  C  R  N  A  M  Y  S  H  S  S  G  E  H  F  H  L  M  T  L  M  L  M  I  H  L  D  L  M  T  R  G  I  S  P  I  W  I  T  N  R  I  E  L  G  P  D  R  G  *  G  R  C  L  R  V  V  Y  G  K  C  L  R  D  Y  R  L  R  R  C  F  H  R  R  G  F  V  R  G  G  W  K  V  L  E  G  S  G  S  L  L  W  S  L  D  L  G  F  P  *  M  P  R  L  D  L  S  G  R  C  *  R  N  V  Q  G  L  L  S  F  L  L  E  W  K   : V  T  L  M  L  P  C  W  P  A  L  L  F  P  V  L  N  W  I  R  W  R  Y  L  C  V  I  P  Q  S  I  G  S  L   : G  M  N  W  V  V  L  L  L  R  K  D  L  L  L  I  S  R  W  K  V  A  L  I  L  G  V  S  L  F  A  Q  P  V  F  Q  L  F  R  F  Q  I  S  I  V  M  L  R  W :   S  S  T  A  P  T  *  R  M  F  P  W  I  F  L  T  K  K  M  T  P  P  I  L  L  S  W  S  M  V   </second_frame>
            <third_frame>   N  Y  R  K  L  P  R  H  S  P  T  F  Y  F  Y  S  S  L  T  S  I  L  P  T  H  F  T  V  A  A  G  K  L  P  I  N  N  G  G  S  *  I  Y  I  Y  I  K  L  *  K  I  L  I  G  R  T  H  C  T  I  F  F  G  S  A  N  *  R  R  N  R  D  A  G  P  S  T  P  S  P  H  H  H  S  Y  I  R  S  Y  P  S  K  A  W  Q  E  A  G  *  L  Q  L  W  P  M  R  C  T  Q  K  R  P  C  L  Q  F  S  *  E  P  *  S  D  *  *  S  Q  S  Q  S  Q  F  V  T  L  S  F  P  T  L  C  C  S  S  S  A  A  T  S  P  A  A  T  P  C  T  P  T  A  P  A  S  T  F  I  *  *  R  *  C  *  *  F  T  W  I  *  *  R  G  G  F  L  R  S  G  *  R  I  G  S  S  W  V  R  I  G  D  R  D  V  A  F  E  L  F  M  G  S  V  *  E  I  T  A  S  G  V  A  F  I  G  E  G  L  *  G  V  V  G  K  F  *  K  D  L  E  V  C  C  G  A  *  T  *  G  S  R  K  C  P  D  W  T  C  R  V  G  V  K  E  M  S  R  A  C  *  A  F  S  *  N  G  K  :  *  H  *  C  Y  H  V  G  L  H  C  F  F  L  S  *  T  G  F  D  G  D  T  Y  V  *  Y  L  S  Q  S  D  H  W  :  G  *  I  G  S  F  C  C  *  E  K  I  S  Y  *  S  Q  D  G  R  L  L  *  S  W  G  F  H  S  L  L  N  Q  S  F  N  S  F  A  F  R  S  L  L  S  C  *  D   : G  L  Q  L  P  Q  L  E  G  C  F  P  G  F  F  S  P  R  K  *  H  H  R  S  Y  S  H  G  R  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70340" stop="69676"/>
                    <exon start="69426" stop="69325"/>
                    <exon start="68580" stop="68436"/>
                    <exon start="68356" stop="68264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEELTVQFFLDPPIDGEIEMQGRQPHPHTTTPISEVILPKRGKKRGSYSCGRCGVPKKGHVCNFPKNLNPIDNPSPNPNSSLLASPPSVVRPQPPPPLPQRHVLPQLRRALSFDDVDVNDSPGSDDEGDFSDLDNESDRVGSGSGIGTLPSSCLWEVFKRLPPPALLSSARVCKGWLESSRRIWKSAVELRLRVPVNAQIGLVGSVLKKCPGLVKLSLRMESDIDATMLACIAFSCPKLDSMEILMCNTSVNRITGDELGRFVAEKRSLTNLKMEGCSNLGGFTLCSTSLSTLSLSDLYCHAKMVFNCPNLKDVSLDFSHQENDTTDLTLMVDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73222" PGL_stop="72327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73222" e_stop="73111"/>
            <exon e_start="72748" e_stop="72327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73222" e_stop="73111" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="73110" i_stop="72749" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72748" e_stop="72327" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73111"/>
              <exon start="72748" stop="72327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG : GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</gDNA_template>
            <first_frame> K  K  R  T  P  M  A  S  S  I  T  A  C  T  T  T  S  L  A  A  R  E  A  L  L  H  K  A  S  A  L  S  R  P  S  V  L   : G  L  P  S  M  R  K  N  V  G  R  V  K  C  S  M  E  R  E  D  S  K  S  G  I  C  G  S  L  V  A  A  T  L  S  F  S  P  T  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  F  G  V  F  G  L  V  W  S  L  Y  T  V  Y  T  S  S  L  D  E  D  E  D  S  A  M  S  L  *  F  Q  L  Q  I  T  M  *  N  H  E  F  Y  S  I  I  S  S  L  Y  L  L  P  W  L  I  V  L  Y  T  Y  E  L  L  L  L  I  I  I  *  C  M  L  K </first_frame>
            <second_frame>  K  N  E  H  Q  W  L  P  A  S  L  L  V  P  P  P  L  *  P  P  V  R  P  S  Y  I  R  H  Q  L  Y  P  A  L  L  F  L  :  G  C  H  Q  *  G  R  M  W  E  G  *  S  V  Q  W  K  E  R  I  Q  N  Q  E  F  V  D  H  *  W  Q  Q  H  Y  H  S  A  Q  Q  Q  W  L  *  W  M  K  E  *  V  Q  K  E  L  G  F  H  L  G  S  V  I  I  F  L  V  G  S  F  L  E  S  L  V  W  F  G  L  F  I  L  F  T  L  L  A  L  M  R  M  K  I  L  Q  C  P  F  N  F  N  F  R  L  L  C  K  I  M  N  S  I  L  S  F  P  L  F  T  F  F  H  G  *  L  Y  Y  I  H  T  N  Y  Y  Y  *  L  S  F  S  A  C  *   </second_frame>
            <third_frame>   K  T  N  T  N  G  F  Q  H  H  C  L  Y  H  H  L  F  S  R  P  *  G  P  P  T  *  G  I  S  S  I  P  P  F  C  S  W :   V  A  I  N  E  E  E  C  G  K  G  E  V  F  N  G  K  R  G  F  K  I  R  N  L  W  I  I  S  G  S  N  T  I  I  Q  P  N  S  N  G  F  S  G  *  K  N  E  Y  R  R  N  W  A  S  I  W  A  Q  *  *  S  S  W  L  D  P  F  W  S  L  W  F  G  L  V  S  L  Y  C  L  H  F  *  P  *  *  G  *  R  F  C  N  V  P  L  I  S  T  S  D  Y  Y  V  K  S  *  I  L  F  Y  H  F  L  S  L  P  S  S  M  A  N  C  T  I  Y  I  R  I  T  I  T  N  Y  H  L  V  H  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73222" stop="73111"/>
                    <exon start="72748" stop="72459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRTPMASSITACTTTSLAAREALLHKASALSRPSVLGLPSMRKNVGRVKCSMEREDSKSGICGSLVAATLSFSPTAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTSSLDEDEDSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97301" PGL_stop="101204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97301" e_stop="97567"/>
            <exon e_start="98518" e_stop="98613"/>
            <exon e_start="98714" e_stop="98932"/>
            <exon e_start="99933" e_stop="100029"/>
            <exon e_start="100961" e_stop="101023"/>
            <exon e_start="101122" e_stop="101204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97301" e_stop="97567" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="97568" i_stop="98517" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98518" e_stop="98613" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.091">
            <gDNA_intron_boundary i_start="98614" i_stop="98713" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98714" e_stop="98932" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98933" i_stop="99932" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99933" e_stop="100029" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100030" i_stop="100960" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100961" e_stop="101023" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="101024" i_stop="101121" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101122" e_stop="101204" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97301" stop="97567"/>
              <exon start="98518" stop="98613"/>
              <exon start="98714" stop="98932"/>
              <exon start="99933" stop="100029"/>
              <exon start="100961" stop="101023"/>
              <exon start="101122" stop="101204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</gDNA_template>
            <first_frame> L  I  H  T  T  L  Y  P  K  F  H  C  T  H  K  V  N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  I  E  G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K </first_frame>
            <second_frame>  *  Y  I  Q  L  C  I  P  S  F  T  V  P  T  K  *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  K  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G   </second_frame>
            <third_frame>   D  T  Y  N  F  V  S  Q  V  S  L  Y  P  Q  S  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : D  *  R  L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97301" stop="97567"/>
                    <exon start="98518" stop="98613"/>
                    <exon start="98714" stop="98932"/>
                    <exon start="99933" stop="100029"/>
                    <exon start="100961" stop="101023"/>
                    <exon start="101122" stop="101204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHTTLYPKFHCTHKVNSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEIEGYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103270" PGL_stop="106160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103270" e_stop="103525"/>
            <exon e_start="103604" e_stop="104391"/>
            <exon e_start="106021" e_stop="106054"/>
            <exon e_start="106133" e_stop="106160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.765"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="103270" e_stop="103525" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103604" e_stop="104391" e_length="788"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104392" i_stop="106020" i_length="1629"/>
          </intron>
          <exon e_serial="3" e_score="0.765">
            <gDNA_exon_boundary e_start="106021" e_stop="106054" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106055" i_stop="106132" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="106133" e_stop="106160" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103270" stop="103525"/>
              <exon start="103604" stop="104391"/>
              <exon start="106021" stop="106054"/>
              <exon start="106133" stop="106160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA : AAAAAAATTTAAAAATTAAAAAAAAATTATAAAA : ATTTCAAAAAAAAAAAAAAAATTTAAAA</gDNA_template>
            <first_frame> H  T  S  K  I  E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L  :  K  K  I  *  K  L  K  K  N  Y  K   : N  F  K  K  K  K  K  I  *   </first_frame>
            <second_frame>  I  R  A  K  *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  * :   K  K  F  K  N  *  K  K  I  I  K  :  I  S  K  K  K  K  K  F  K  </second_frame>
            <third_frame>   Y  E  Q  N  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S   : K  K  N  L  K  I  K  K  K  L  *  K :   F  Q  K  K  K  K  N  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103525"/>
                    <exon start="103604" stop="104233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103304" e_stop="103525"/>
            <exon e_start="103604" e_stop="103914"/>
            <exon e_start="103980" e_stop="104152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103304" e_stop="103525" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="103526" i_stop="103603" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103604" e_stop="103914" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103915" i_stop="103979" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="103980" e_stop="104152" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103304" stop="103525"/>
              <exon start="103604" stop="103914"/>
              <exon start="103980" stop="104152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC : CAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</gDNA_template>
            <first_frame> R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A :   K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  </first_frame>
            <second_frame>  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R   : P  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K </second_frame>
            <third_frame>   I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  :  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103525"/>
                    <exon start="103604" stop="103914"/>
                    <exon start="103980" stop="103989"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103289" e_stop="104392"/>
            <exon e_start="106021" e_stop="106060"/>
            <exon e_start="106138" e_stop="106160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103289" e_stop="104392" e_length="1104"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104393" i_stop="106020" i_length="1628"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="106021" e_stop="106060" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106061" i_stop="106137" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.870">
            <gDNA_exon_boundary e_start="106138" e_stop="106160" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103289" stop="104392"/>
              <exon start="106021" stop="106060"/>
              <exon start="106138" stop="106160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA : AAAAAAATTTAAAAATTAAAAAAAAATTATAAAAGTCGGT : AAAAAAAAAAAAAAAATTTAAAA</gDNA_template>
            <first_frame> F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  V  K  L  V  I  D  L  L  L  V  E  V  V  V  *  F  A  D  Q  L  T  *  N  A  M  Q  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  :  K  K  I  *  K  L  K  K  N  Y  K  S  R   : *  K  K  K  K  N  L  K </first_frame>
            <second_frame>  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R  *  N  W  L  *  I  C  Y  *  S  K  L  L  F  N  L  P  I  S  *  L  E  M  L  C  R  *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  K :   K  K  F  K  N  *  K  K  I  I  K  V  G  :  K  K  K  K  K  I  *   </second_frame>
            <third_frame>   L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *  G  K  I  G  Y  R  F  V  I  S  R  S  C  C  L  I  C  R  S  A  N  L  K  C  Y  A  D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L   : K  K  N  L  K  I  K  K  K  L  *  K  S  V :   K  K  K  K  K  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103592" stop="104233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAMQMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103322" stop="103570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEVKLVIDLLLVEVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="112294" PGL_stop="119703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112294" e_stop="112471"/>
            <exon e_start="112968" e_stop="113462"/>
            <exon e_start="115852" e_stop="116098"/>
            <exon e_start="116786" e_stop="116934"/>
            <exon e_start="117019" e_stop="117297"/>
            <exon e_start="117488" e_stop="117682"/>
            <exon e_start="119294" e_stop="119703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="112294" e_stop="112471" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112472" i_stop="112967" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112968" e_stop="113462" e_length="495"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113463" i_stop="115851" i_length="2389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115852" e_stop="116098" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116786" e_stop="116934" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116935" i_stop="117018" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117019" e_stop="117297" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117298" i_stop="117487" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117488" e_stop="117682" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117683" i_stop="119293" i_length="1611"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119294" e_stop="119703" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112294" stop="112471"/>
              <exon start="112968" stop="113462"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116934"/>
              <exon start="117019" stop="117297"/>
              <exon start="117488" stop="117682"/>
              <exon start="119294" stop="119703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT : CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA : ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG : GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG : AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT</gDNA_template>
            <first_frame> L  K  V  E  D  C  N  C  I  V  F  M  S  L  L  A  K  I  *  I  E  Q  V  V  G  T  R  G  K  L  S  E  D  G  L  N  K  T  *  N  C  Y  T  Y  V  P  P  C  F  H  S  L  I  R  Y  L  F  N  S   : S  N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : C  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I   : N  A  N  A  K  C  S  C  T  P  E  Y  A  P  A  W  T  *  P  T  L  G  S  T  A  V  *  L  S  H  E  C  W  G  P  W  I  R  S  Q  P  S  V  Y  A  A  T  A  S  I  *  Q  L  F  S  P  S  R  H  A  S  R  *  A  A  S  S  G  S  P  C  L  W  Q  R  C  F  N  G  S  S  W  K  C  T  T  T  T  I  N  S  F  K   : G  H  T  E  H  T  N  P  L  V  I  C  R  C  C  Y  W  G  F  W  F  K  Y  *  L  Y  S  S  G  Q  W  C  N  Y  C  S  T  G  N  E  G  C  S  W  *  D  D  C  *  D  K  W  V  C  I  T  S  P  N  S  T  T  I  S  S   : E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  D  I </first_frame>
            <second_frame>  *  K  *  K  T  V  I  V  *  F  S  C  L  C  W  L  K  Y  E  *  N  K  W  *  V  L  G  G  N  Y  P  K  M  A  S  I  K  P  R  I  V  T  L  M  S  R  L  A  S  T  A  S  F  D  I  S  S  I  H  :  Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L  :  M  Q  M  P  N  A  H  A  H  Q  N  M  P  P  P  G  P  N  Q  P  W  G  P  P  P  S  S  F  P  M  S  A  G  G  P  G  Y  G  A  N  H  Q  Y  M  P  P  P  R  Q  F  D  N  Y  F  P  R  V  D  M  H  Q  D  K  Q  P  H  Q  G  P  P  V  Y  G  R  D  A  S  M  G  A  H  G  N  A  Q  P  Q  Q  S  I  V  S  K  :  V  T  Q  N  I  Q  I  P  L  S  Y  A  D  A  V  I  G  A  S  G  S  N  I  S  Y  I  R  R  A  S  G  A  T  I  A  V  Q  E  T  R  G  V  P  G  E  M  T  V  E  I  N  G  S  A  S  Q  V  Q  T  A  Q  Q  L  V  Q  :  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E  I   </second_frame>
            <third_frame>   E  S  R  R  L  *  L  Y  S  F  H  V  F  V  G  *  N  M  N  R  T  S  G  R  Y  *  G  E  I  I  R  R  W  P  Q  *  N  L  E  L  L  H  L  C  P  A  L  L  P  Q  P  H  S  I  S  L  Q  F  I :   K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N  * :   C  K  C  Q  M  L  M  H  T  R  I  C  P  R  L  D  L  T  N  L  G  V  H  R  R  L  A  F  P  *  V  L  G  A  L  D  T  E  P  T  I  S  I  C  R  H  R  V  N  L  T  I  I  F  P  E  *  T  C  I  K  I  S  S  L  I  R  V  P  L  F  M  A  E  M  L  Q  W  E  L  M  E  M  H  N  H  N  N  Q  *  F  Q  R :   S  H  R  T  Y  K  S  P  C  H  M  P  M  L  L  L  G  L  L  V  Q  I  L  V  I  F  V  G  P  V  V  Q  L  L  Q  Y  R  K  R  G  V  F  L  V  R  *  L  L  R  *  M  G  L  H  H  K  S  K  Q  H  N  N  *  F  R :   I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112367" stop="112471"/>
                    <exon start="112968" stop="113462"/>
                    <exon start="115852" stop="116098"/>
                    <exon start="116786" stop="116934"/>
                    <exon start="117019" stop="117297"/>
                    <exon start="117488" stop="117682"/>
                    <exon start="119294" stop="119467"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLGGNYPKMASIKPRIVTLMSRLASTASFDISSIHQMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERAVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPNQPWGPPPSSFPMSAGGPGYGANHQYMPPPRQFDNYFPRVDMHQDKQPHQGPPVYGRDASMGAHGNAQPQQSIVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQLVQNSIADATSSMQNTAAGPPSQGYNPYPSQGPVYSSSTGHAGHAPSADYGSVYGGSYGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113262" e_stop="113462"/>
            <exon e_start="114484" e_stop="114645"/>
            <exon e_start="115852" e_stop="116098"/>
            <exon e_start="116786" e_stop="116933"/>
            <exon e_start="117019" e_stop="117026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113262" e_stop="113462" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113463" i_stop="114483" i_length="1021"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114484" e_stop="114645" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114646" i_stop="115851" i_length="1206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115852" e_stop="116098" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="116099" i_stop="116785" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="116786" e_stop="116933" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116934" i_stop="117018" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117019" e_stop="117026" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113462"/>
              <exon start="114484" stop="114645"/>
              <exon start="115852" stop="116098"/>
              <exon start="116786" stop="116933"/>
              <exon start="117019" stop="117026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT : ATGCAAAT</gDNA_template>
            <first_frame> V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  C  V  Q  V  C  P  Y  K  S  G  L  L  *  K  N  Q  R  S  R  L  L  P  S  T  L  S  I  T  S  A  G  S  P  S  D  N  L  S  K  L  P  Y  L  A  I  N  I  Q  K  I  A  P  C  L  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L :   C  K  </first_frame>
            <second_frame>  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   V  C  R  F  V  H  I  K  V  A  Y  S  R  R  T  K  D  P  D  C  C  H  Q  H  *  A  L  Q  V  L  E  V  L  L  T  I  C  Q  N  Y  L  I  W  P  S  I  S  R  R  L  H  R  V  W :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N   : Y  A  N </second_frame>
            <third_frame>   C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : L  C  A  G  L  S  I  *  K  W  L  T  L  E  E  P  K  I  Q  T  A  A  I  N  I  E  H  Y  K  C  W  K  S  F  *  Q  S  V  K  I  T  L  S  G  H  Q  Y  P  E  D  C  T  V  S   : G  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I  :  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114523" stop="114645"/>
                    <exon start="115852" stop="116098"/>
                    <exon start="116786" stop="116933"/>
                    <exon start="117019" stop="117025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQRSRLLPSTLSITSAGSPSDNLSKLPYLAINIQKIAPCLVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLCK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113262" stop="113462"/>
                    <exon start="114484" stop="114522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERACVQVCPYKSGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="121882" PGL_stop="120014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121882" e_stop="121865"/>
            <exon e_start="121025" e_stop="120900"/>
            <exon e_start="120603" e_stop="120014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.734" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121882" e_stop="121865" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.734" acc_prob="0.798">
            <gDNA_intron_boundary i_start="121864" i_stop="121026" i_length="839"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121025" e_stop="120900" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="120899" i_stop="120604" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="120603" e_stop="120014" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121882" stop="121865"/>
              <exon start="121025" stop="120900"/>
              <exon start="120603" stop="120014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAGGTTAATGTTCCG : ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG : ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</gDNA_template>
            <first_frame> S  K  V  N  V  P  :  I  L  G  I  L  E  N  M  S  Y  F  K  C  P  K  C  N  E  S  S  F  I  F  G  Q  G  G  A  R  K  T  A  E  E  M  G  L  K  F  L  G  E  :  I  P  L  E  V  E  I  R  S  G  S  D  E  G  V  P  I  V  M  S  N  P  D  S  V  I  S  Q  V  Y  G  N  V  A  E  K  V  V  M  R  L  E  E  V  D  K  E  Q  H  F  R  P  D  V  S  L  *  M  R  *  S  S  S  P  P  T  *  V  *  *  *  L  L  E  S  N  P  S  N  K  I  R  E  K  S  S  W  L  W  I  *  S  *  R  K  S  I  I  R  R  S  C  D  A  D  V  L  A  G  R  E  Q  S  C  *  L  T  E  L  S  L  N  N  *  H  *  L  K  V  A  G  I  M  M  Y  P  F  S  *  L  N  P  S  F  Q  H  E  K  I  I  F  T  N  D  E  H  S  V  D  *  E  G  L  V  I  L  I  F  L  G  K  K  G  E  I  K  D  F  S  C  I  G  F  L  I  F  Y  S  S  K  F  G  C  C  L  Y   </first_frame>
            <second_frame>  P  R  L  M  F  R :   Y  W  E  F  W  R  I  *  A  T  L  N  A  Q  N  A  M  N  R  P  L  S  L  V  K  E  E  L  G  K  Q  L  R  R  W  V  *  N  F  L  V  R :   Y  H  L  K  W  R  S  E  A  V  P  T  K  V  F  P  L  L  C  Q  T  L  I  L  *  S  L  K  Y  M  A  M  W  L  K  K  L  S  *  G  L  K  R  *  I  R  S  N  T  S  G  Q  M  Y  L  F  K  C  V  D  Q  A  L  H  Q  L  E  C  S  S  N  Y  *  N  P  T  L  L  T  K  S  E  K  N  L  V  G  S  G  Y  R  V  K  G  S  P  L  S  G  E  V  V  T  P  M  C  L  L  G  G  S  N  L  V  D  L  L  S  Y  H  S  T  I  N  T  N  *  K  L  Q  E  *  *  C  I  L  L  A  N  *  T  H  L  F  N  M  K  R  *  Y  L  Q  M  M  N  I  A  W  I  E  K  V  *  S  F  S  S  F  *  E  K  K  E  K  S  K  I  F  H  V  L  D  F  L  S  F  I  L  P  N  L  D  A  A  C  I  </second_frame>
            <third_frame>   Q  G  *  C  S   : D  T  G  N  F  G  E  Y  E  L  L  *  M  P  K  M  Q  *  I  V  L  Y  L  W  S  R  R  S  *  E  N  S  *  G  D  G  S  E  I  S  W  *   : D  T  T  *  S  G  D  Q  K  R  F  R  R  R  C  S  H  C  Y  V  K  P  *  F  C  N  L  S  S  I  W  Q  C  G  *  K  S  C  H  E  A  *  R  G  R  *  G  A  T  L  Q  A  R  C  I  S  L  N  A  L  I  K  L  S  T  N  L  S  V  V  V  T  T  R  I  Q  P  F  *  Q  N  Q  R  K  I  *  L  A  L  D  I  E  L  K  E  V  H  Y  Q  E  K  L  *  R  R  C  A  C  W  E  G  A  I  L  L  T  Y  *  V  I  T  Q  Q  L  T  L  T  E  S  C  R  N  N  D  V  S  F  *  L  I  E  P  I  F  S  T  *  K  D  N  I  Y  K  *  *  T  *  R  G  L  R  R  F  S  H  S  H  L  S  R  K  K  R  R  N  Q  R  F  F  M  Y  W  I  S  Y  L  L  F  F  Q  I  W  M  L  L  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121882" stop="121865"/>
                    <exon start="121025" stop="120900"/>
                    <exon start="120603" stop="120433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKVNVPILGILENMSYFKCPKCNESSFIFGQGGARKTAEEMGLKFLGEIPLEVEIRSGSDEGVPIVMSNPDSVISQVYGNVAEKVVMRLEEVDKEQHFRPDVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="126827" PGL_stop="127950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126827" e_stop="127950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="126827" e_stop="127950" e_length="1124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126827" stop="127950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATT</gDNA_template>
            <first_frame> Q  I  Q  R  Y  L  V  G  N  S  V  *  V  A  L  S  Q  V  P  S  A  *  I  F  L  R  R  W  K  K  S  *  V  L  L  Q  I  R  T  K  Y  K  Q  R  *  V  V  L  R  F  M  G  T  H  Q  T  G  I  E  V  M  K  V  K  G  N  F  T  R  K  N  *  M  N  G  N  Q  E  R  G  A  E  S  L  P  M  G  G  K  K  H  *  I  M  L  K  Q  R  G  K  G  V  R  S  *  T  R  G  F  M  L  *  E  Q  L  F  R  I  S  Q  R  W  I  K  H  R  C  L  E  M  Q  L  L  I  S  Q  I  S  R  Q  E  L  G  F  *  M  L  R  R  R  W  *  A  T  S  K  S  S  R  L  S  W  R  L  I  F  I  K  D  K  M  M  Q  L  *  E  *  A  A  L  *  M  L  T  L  F  L  E  F  *  R  H  F  R  N  I  K  W  W  H  K  N  P  M  S  H  *  Q  K  T  A  N  L  Y  T  C  S  L  Y  E  L  L  A  L  L  L  R  I  *  R  K  S  *  Q  L  L  C  L  N  D  L  D  V  Q  R  I  R  S  N  H  A  M  Y  V  D  C  S  *  M  L  A  V  L  L  *  R  P  G  G  Q  Y  Q  *  S  D  C  Y  A  L  L  D  Y  S  C  M  S  I  N  V  *  L  V  S  L  H  Y  I  L  L  T  I  Q  S  K  C  K  F  W  P  R  M  V  S  A  F  R  I  R  M  K  T  C  S  C  S  T  *  S  Q  S  C  Y  V  C  C  L  *  L  M  Q  V  S  S  C  L  L  V  I  L  M  *  V  V  R  L  S  Y  F  R  L  V  F  T  Y  E  R  R  I  M  F  *  E  F  I   </first_frame>
            <second_frame>  K  Y  K  D  I  W  S  G  T  Q  S  R  W  R  *  V  R  S  H  Q  H  K  F  F  S  E  G  G  R  R  A  E  F  C  F  R  F  V  R  S  T  S  S  A  R  *  F  S  G  L  W  E  L  I  K  R  V  S  K  *  *  R  *  R  E  T  L  Q  G  R  I  R  *  T  E  T  K  K  E  G  Q  K  A  C  Q  W  E  G  R  S  I  E  S  C  *  S  R  E  A  K  A  *  E  A  K  P  E  V  L  C  F  K  S  S  C  S  E  Y  L  K  D  G  *  S  I  A  A  W  R  C  N  C  L  Y  H  R  S  P  G  K  N  *  G  F  R  C  *  E  G  D  G  R  R  Q  A  K  A  A  G  Y  P  G  D  *  F  S  S  K  T  R  *  C  S  C  K  S  R  L  P  F  E  C  S  P  C  F  *  S  F  E  D  I  S  G  T  S  S  G  G  T  R  I  Q  C  L  I  N  R  K  R  R  T  C  T  H  V  L  Y  T  S  S  W  P  C  C  *  G  F  E  G  K  A  D  S  C  S  V  *  M  I  *  M  F  R  E  *  G  L  I  M  Q  C  M  L  T  V  V  K  C  *  P  F  C  F  K  D  P  V  V  S  I  S  D  Q  I  V  M  L  C  S  I  I  R  V  *  A  S  M  S  S  W  *  V  C  I  I  F  C  *  L  Y  N  L  N  V  S  F  G  R  E  W  Y  L  L  L  E  L  E  *  K  P  A  A  A  Q  H  E  V  N  H  A  M  Y  V  V  C  S  *  C  K  L  V  L  V  Y  W  *  F  L  C  E  W  S  D  Y  H  T  S  V  *  Y  L  R  M  N  V  A  *  C  F  E  S  L  Y  </second_frame>
            <third_frame>   N  T  K  I  F  G  R  E  L  S  L  G  G  A  K  S  G  P  I  S  I  N  F  S  P  K  V  E  E  E  L  S  F  A  S  D  S  Y  E  V  Q  A  A  L  G  S  S  Q  V  Y  G  N  S  S  N  G  Y  R  S  D  E  G  E  G  K  L  Y  K  E  E  L  D  E  R  K  P  R  K  R  G  R  K  P  A  N  G  R  E  E  A  L  N  H  V  E  A  E  R  Q  R  R  E  K  L  N  Q  R  F  Y  A  L  R  A  V  V  P  N  I  S  K  M  D  K  A  S  L  L  G  D  A  I  A  Y  I  T  D  L  Q  A  R  I  R  V  L  D  A  E  K  E  M  V  G  D  K  Q  K  Q  Q  V  I  L  E  I  D  F  H  Q  R  Q  D  D  A  V  V  R  V  G  C  P  L  N  A  H  P  V  S  R  V  L  K  T  F  Q  E  H  Q  V  V  A  Q  E  S  N  V  S  L  T  E  N  G  E  L  V  H  M  F  S  I  R  A  P  G  P  A  A  E  D  L  K  E  K  L  T  A  A  L  S  K  *  F  R  C  S  E  N  K  V  *  S  C  N  V  C  *  L  *  L  N  A  S  R  F  A  L  K  T  R  W  S  V  S  V  I  R  L  L  C  F  A  R  L  F  V  Y  E  H  Q  C  L  A  G  K  F  A  L  Y  F  V  D  Y  T  I  *  M  *  V  L  A  E  N  G  I  C  F  *  N  *  N  E  N  L  Q  L  L  N  M  K  S  I  M  L  C  M  L  F  V  V  D  A  S  *  F  L  F  T  G  D  S  Y  V  S  G  Q  T  I  I  L  P  S  S  I  Y  V  *  T  S  H  N  V  L  R  V  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0028D14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126829" stop="127545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKIFGRELSLGGAKSGPISINFSPKVEEELSFASDSYEVQAALGSSQVYGNSSNGYRSDEGEGKLYKEELDERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQARIRVLDAEKEMVGDKQKQQVILEIDFHQRQDDAVVRVGCPLNAHPVSRVLKTFQEHQVVAQESNVSLTENGELVHMFSIRAPGPAAEDLKEKLTAALSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 49 chains have been computed
$ 
$ memory statistics:
$ 150504 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 6020 bytes was the average size of a spliced alignment
$ 27720 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1540 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:51:13
-->
