<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-28 09:59:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378666" ref_strand="+" ref_description="SGN-E378666 [TUS-18-A17]">
      <seq>aaggatgttacaagtaagcaattggagcagtgcagagaaccttctaaaccggtaaaaagacgtcgagtgctacaatttgatgctgagatcctggattccactggttcaaatgaaaagcttgcattaactttcttaaaatctaaggagaggaatgcctattttgaagaagctaggagtgatgtgtcagactggttttccgaatatgcagatggtgcaacatcttcggctcaggaaggttttgatgagtcatctgaagaatggcttactgattgcattaatgatcctgagttgcagattatttccgaggatatgaatgcatctggagtatctgatattcaagcagacacaatggaagttgtcaattccccaccagaatgcgagataactatggttaaaagcagtcctgctcgtacttatgggaacattgttttcaaaggtaggagttcatacacaaagactcccaagaaaggtgcatcttctgtagtttacccgtttggatttatcaaaccctgcagcgctcaaggagatgtgactttaaaagagatcaacaaaaagatacgtactccgccaccatctaaatcaaagcaacacaatcaagattcaccaccttatccaacatcagctttttccgggaagcctgtcattggcaagacaaaaattcacacagagggcggaagaggcagcattaccatcatgagaactaaagggtaatctcttgaaatttttttttcttttgggacaaactttagcatgggactgctccaaattcctttgacagagcaattttatggtactgtttttaggtcttcagcacataagttgaattnntgtatagtccttattagggagaaaatgtgnagacttagtagtggattagtctctcattattctgaaatctcaatgtatattgggtttatagatcaatgactttttatctattttgataattaccaaattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9892" stop="7491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9682" g_stop="9679" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9678" i_stop="9592" i_length="87">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.113" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9591" g_stop="9452" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="144" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9451" i_stop="9114" i_length="338">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9113" g_stop="9050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="208" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9049" i_stop="8971" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8970" g_stop="8868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8867" i_stop="8782" i_length="86">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8781" g_stop="8741" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="352" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8740" i_stop="8583" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8582" g_stop="8499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8498" i_stop="8319" i_length="180">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8318" g_stop="7791" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="962" r_length="526" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E378666" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9682" e_stop="9679"/>
          <exon e_start="9591" e_stop="9452"/>
          <exon e_start="9113" e_stop="9050"/>
          <exon e_start="8970" e_stop="8868"/>
          <exon e_start="8781" e_stop="8741"/>
          <exon e_start="8582" e_stop="8499"/>
          <exon e_start="8318" e_stop="7791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTAAGAGGTTTGATCCAGATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAGGTTACTACTACTACCTTTTGCTATGTGTTTTGAGTTGTGTAGTATAGCACACTTCTAATAATACTTTAGCATAAATAATGTATGTTGTTTCCCACACGTGAACCAAGTTAACTTTAACATTAATAATGTATGTTGCTTCCACATGTTAAACCAAGTTAGGCGTTTTGTTAATCCGATAGTTCAGTGGTGGAATTTGCTCCGTAAGGAAACCTCTTGCGACAATGCACCTTTTCAGTTCTGCTTCATTTTACATGTTTATGTTACTAAGTAATGCAGAAAAAATATCTGAGGAAATGATTTCTATAAAAGTGATTTTACATGGAAGTTGGATAATGCAGGAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAGGTCAATCTGTGCGACATTTTTGTTAAGTTATATCTGCTTAATTTGTTGAATTCATTATTGACAGAATACGTTTTTCTAGATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATATGTAACTTTTCATCCTTAGCCATCCATGCTCATAATGACTTTTAGTTATGTTATGTGTGCTCTGTTCTAACACATTTATTTTAACAGGAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGGGTAGGGAATCTCTCTTTCCATTGAGAATGTTCTTTTTCTTTTGTTCTTCCTTTACTTTTGGTCTGTCTCCTCTATATTTTTCATGTGCCGGTGTTTTTGTGTTCCTTTTCATGTTATTCTTGTTTAATATTTGATTGACGTCAGCTTATCTGTTGCAGAAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACATTGTTTTCAAAGGTTTATACTTTATCTATGAGATTACAATTTACACTCTTACTTTCTTCACGGTTACACTTCTCATCATTGAGTCTCAAATAGCTGCGGAGAATTCATTACAATTTGAAAAGAATATTCTGTGAAAACTTTGTCAATACTGGCTGCTACTGAGCTCCTACTCTTAACTGACTATACATCCAGGTAGGAGTTCATACACAAAGACTCCCAAGAAAGGTGCATCTTCTGTAGTTTACCCGTTTGGATTTATCAAACCCTGCAGCGCTCAAGGAGATGTGACTTTAAAAGAGATCAACAAAAAGATACGTACTCCGCCACCATCTAAATCAAAGCAACACAATCAAGATTCACCACCTTATCCAACATCAGCTTTTTCCGGGAAGCCTGTCATTGGCAAGACAAAAATTCACACAGAGGGCGGAAGAGGCAGCATTACCATCATGAGAACTAAAGGGTAATCTCTTGAAATTTTTTTTTCTTTTGGGACAAACTTTAGCATGGGACTGCTCCAAATTCCTTTGACAGAGCAATTTTATGGTACTGTTTTTAGGTCTTCAGCACATAAGTTGAATT-TTGTATTAGTCCTTATTAGGGAGAAAATGTGGAGACTTAGTAGTGGATTAGTCTCTCATTATTTTGAAATCTCAATGTATATTGGTTTATTAGATCAATGACTTTTTATCTATTTTGATAAATTAGCAAAATTTTGGG</genome_strand>
        <mrna_strand>AAGG.......................................................................................ATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAG..................................................................................................................................................................................................................................................................................................................................................GAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAG...............................................................................ATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATAT......................................................................................GAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGG..............................................................................................................................................................AAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACATTGTTTTCAAAG....................................................................................................................................................................................GTAGGAGTTCATACACAAAGACTCCCAAGAAAGGTGCATCTTCTGTAGTTTACCCGTTTGGATTTATCAAACCCTGCAGCGCTCAAGGAGATGTGACTTTAAAAGAGATCAACAAAAAGATACGTACTCCGCCACCATCTAAATCAAAGCAACACAATCAAGATTCACCACCTTATCCAACATCAGCTTTTTCCGGGAAGCCTGTCATTGGCAAGACAAAAATTCACACAGAGGGCGGAAGAGGCAGCATTACCATCATGAGAACTAAAGGGTAATCTCTTGAAATTTTTTTTTCTTTTGGGACAAACTTTAGCATGGGACTGCTCCAAATTCCTTTGACAGAGCAATTTTATGGTACTGTTTTTAGGTCTTCAGCACATAAGTTGAATTNNTGTA-TAGTCCTTATTAGGGAGAAAATGTGNAGACTTAGTAGTGGATTAGTCTCTCATTATTCTGAAATCTCAATGTATATTGGGTTTATAGATCAATGACTTTTTATCTATTTTGAT-AATTA-CCAAATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209123" ref_strand="+" ref_description="SGN-E209123 [cLEC-38-A12]">
      <seq>aaggatgttacaagtaagcaattggagcagtgcagagaaccttctaaaccggtaaaaagacgtcgagtgctacaatttgatgctgagatcctggattccactggttcaaatgaaaagcttgcattaactttcttaaaatctaaggagaggaatgcctattttgaagaagctaggagtgatgtgtcagactggttttccgaatatgcagatggtgcaacatcttcggctcaggaaggttttgatgagtcatctgaagaatggcttactgattgcattaatgatcctgagttgcagattatttccgaggatatgaatgcatctggagtatctgatattcaagcagacacaatggaagttgtcaattccccaccagaatgcgagataactatggttaaaagcagtcctgctcgtacttatgggaacattgttttcaaaggtaggagttcatacacaaagactcccaagaaaggtgcatcttctgtagtttacccgtttggatttatcaaaccctgcagcgctcaaggagatgtgactttaaaagagatcaacaaaaagatacgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9892" stop="7892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9682" g_stop="9679" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9678" i_stop="9592" i_length="87">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.113" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9591" g_stop="9452" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="144" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9451" i_stop="9114" i_length="338">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9113" g_stop="9050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="208" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9049" i_stop="8971" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8970" g_stop="8868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8867" i_stop="8782" i_length="86">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8781" g_stop="8741" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="352" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8740" i_stop="8583" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8582" g_stop="8499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8498" i_stop="8319" i_length="180">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8318" g_stop="8192" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="563" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E209123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9682" e_stop="9679"/>
          <exon e_start="9591" e_stop="9452"/>
          <exon e_start="9113" e_stop="9050"/>
          <exon e_start="8970" e_stop="8868"/>
          <exon e_start="8781" e_stop="8741"/>
          <exon e_start="8582" e_stop="8499"/>
          <exon e_start="8318" e_stop="8192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTAAGAGGTTTGATCCAGATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAGGTTACTACTACTACCTTTTGCTATGTGTTTTGAGTTGTGTAGTATAGCACACTTCTAATAATACTTTAGCATAAATAATGTATGTTGTTTCCCACACGTGAACCAAGTTAACTTTAACATTAATAATGTATGTTGCTTCCACATGTTAAACCAAGTTAGGCGTTTTGTTAATCCGATAGTTCAGTGGTGGAATTTGCTCCGTAAGGAAACCTCTTGCGACAATGCACCTTTTCAGTTCTGCTTCATTTTACATGTTTATGTTACTAAGTAATGCAGAAAAAATATCTGAGGAAATGATTTCTATAAAAGTGATTTTACATGGAAGTTGGATAATGCAGGAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAGGTCAATCTGTGCGACATTTTTGTTAAGTTATATCTGCTTAATTTGTTGAATTCATTATTGACAGAATACGTTTTTCTAGATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATATGTAACTTTTCATCCTTAGCCATCCATGCTCATAATGACTTTTAGTTATGTTATGTGTGCTCTGTTCTAACACATTTATTTTAACAGGAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGGGTAGGGAATCTCTCTTTCCATTGAGAATGTTCTTTTTCTTTTGTTCTTCCTTTACTTTTGGTCTGTCTCCTCTATATTTTTCATGTGCCGGTGTTTTTGTGTTCCTTTTCATGTTATTCTTGTTTAATATTTGATTGACGTCAGCTTATCTGTTGCAGAAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACATTGTTTTCAAAGGTTTATACTTTATCTATGAGATTACAATTTACACTCTTACTTTCTTCACGGTTACACTTCTCATCATTGAGTCTCAAATAGCTGCGGAGAATTCATTACAATTTGAAAAGAATATTCTGTGAAAACTTTGTCAATACTGGCTGCTACTGAGCTCCTACTCTTAACTGACTATACATCCAGGTAGGAGTTCATACACAAAGACTCCCAAGAAAGGTGCATCTTCTGTAGTTTACCCGTTTGGATTTATCAAACCCTGCAGCGCTCAAGGAGATGTGACTTTAAAAGAGATCAACAAAAAGATACGTAC</genome_strand>
        <mrna_strand>AAGG.......................................................................................ATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAG..................................................................................................................................................................................................................................................................................................................................................GAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAG...............................................................................ATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATAT......................................................................................GAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGG..............................................................................................................................................................AAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACATTGTTTTCAAAG....................................................................................................................................................................................GTAGGAGTTCATACACAAAGACTCCCAAGAAAGGTGCATCTTCTGTAGTTTACCCGTTTGGATTTATCAAACCCTGCAGCGCTCAAGGAGATGTGACTTTAAAAGAGATCAACAAAAAGATACGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206767" ref_strand="+" ref_description="SGN-E206767 [cLEC-31-B20]">
      <seq>aaggatgttacaagtaagcaattggagcagtgcagagaaccttctaaaccggtaaaaagacgtcgagtgctacaatttgatgctgagatcctggattccactggttcaaatgaaaagcttgcattaactttcttaaaatctaaggagaggaatgcctattttgaagaagctaggagtgatgtgtcagactggttttccgaatatgcagatggtgcaacatcttcggctcaggaaggttttgatgagtcatctgaagaatggcttactgattgcattaatgatcctgagttgcagattatttccgaggatatgaatgcatctggagtatctgatattcaagcagacacaatggaagttgtcaattccccaccagaatgcgagataactatggttaaaagcagtcctgctcgtacttatgggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9892" stop="8211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9682" g_stop="9679" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9678" i_stop="9592" i_length="87">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.113" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9591" g_stop="9452" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="144" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9451" i_stop="9114" i_length="338">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9113" g_stop="9050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="208" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9049" i_stop="8971" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8970" g_stop="8868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8867" i_stop="8782" i_length="86">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8781" g_stop="8741" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="352" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8740" i_stop="8583" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8582" g_stop="8511" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E206767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9682" e_stop="9679"/>
          <exon e_start="9591" e_stop="9452"/>
          <exon e_start="9113" e_stop="9050"/>
          <exon e_start="8970" e_stop="8868"/>
          <exon e_start="8781" e_stop="8741"/>
          <exon e_start="8582" e_stop="8511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTAAGAGGTTTGATCCAGATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAGGTTACTACTACTACCTTTTGCTATGTGTTTTGAGTTGTGTAGTATAGCACACTTCTAATAATACTTTAGCATAAATAATGTATGTTGTTTCCCACACGTGAACCAAGTTAACTTTAACATTAATAATGTATGTTGCTTCCACATGTTAAACCAAGTTAGGCGTTTTGTTAATCCGATAGTTCAGTGGTGGAATTTGCTCCGTAAGGAAACCTCTTGCGACAATGCACCTTTTCAGTTCTGCTTCATTTTACATGTTTATGTTACTAAGTAATGCAGAAAAAATATCTGAGGAAATGATTTCTATAAAAGTGATTTTACATGGAAGTTGGATAATGCAGGAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAGGTCAATCTGTGCGACATTTTTGTTAAGTTATATCTGCTTAATTTGTTGAATTCATTATTGACAGAATACGTTTTTCTAGATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATATGTAACTTTTCATCCTTAGCCATCCATGCTCATAATGACTTTTAGTTATGTTATGTGTGCTCTGTTCTAACACATTTATTTTAACAGGAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGGGTAGGGAATCTCTCTTTCCATTGAGAATGTTCTTTTTCTTTTGTTCTTCCTTTACTTTTGGTCTGTCTCCTCTATATTTTTCATGTGCCGGTGTTTTTGTGTTCCTTTTCATGTTATTCTTGTTTAATATTTGATTGACGTCAGCTTATCTGTTGCAGAAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACA</genome_strand>
        <mrna_strand>AAGG.......................................................................................ATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAG..................................................................................................................................................................................................................................................................................................................................................GAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAG...............................................................................ATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATAT......................................................................................GAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGG..............................................................................................................................................................AAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395853" ref_strand="+" ref_description="SGN-E395853 [TUS-18-A17]">
      <seq>caaggatgttacaagtaagcaattggagcagtgcagagaaccttctaaaccggtaaaaagacgtcgagtgctacaatttgatgctgagatcctggattccactggttcaaatgaaaagcttgcattaactttcttaaaatctaaggagaggaatgcctattttgaagaagctaggagtgatgtgtcagactggttttccgaatatgcagatggtgcaacatcttcggctcaggaaggttttgatgagtcatctgaagaatggcttactgattgcattaatgatcctgagttgcagattatttccgaggatatgaatgcatctggagtatctgatattcaagcagacacaatggaagttgtcaattccccaccagaatgcgagataactatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9895" stop="8242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9683" g_stop="9679" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9678" i_stop="9592" i_length="87">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.113" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9591" g_stop="9452" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="145" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9451" i_stop="9114" i_length="338">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9113" g_stop="9050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="209" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9049" i_stop="8971" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8970" g_stop="8868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="312" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8867" i_stop="8782" i_length="86">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8781" g_stop="8741" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="353" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8740" i_stop="8583" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8582" g_stop="8545" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="391" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E395853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9683" e_stop="9679"/>
          <exon e_start="9591" e_stop="9452"/>
          <exon e_start="9113" e_stop="9050"/>
          <exon e_start="8970" e_stop="8868"/>
          <exon e_start="8781" e_stop="8741"/>
          <exon e_start="8582" e_stop="8545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTAAGAGGTTTGATCCAGATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAGGTTACTACTACTACCTTTTGCTATGTGTTTTGAGTTGTGTAGTATAGCACACTTCTAATAATACTTTAGCATAAATAATGTATGTTGTTTCCCACACGTGAACCAAGTTAACTTTAACATTAATAATGTATGTTGCTTCCACATGTTAAACCAAGTTAGGCGTTTTGTTAATCCGATAGTTCAGTGGTGGAATTTGCTCCGTAAGGAAACCTCTTGCGACAATGCACCTTTTCAGTTCTGCTTCATTTTACATGTTTATGTTACTAAGTAATGCAGAAAAAATATCTGAGGAAATGATTTCTATAAAAGTGATTTTACATGGAAGTTGGATAATGCAGGAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAGGTCAATCTGTGCGACATTTTTGTTAAGTTATATCTGCTTAATTTGTTGAATTCATTATTGACAGAATACGTTTTTCTAGATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATATGTAACTTTTCATCCTTAGCCATCCATGCTCATAATGACTTTTAGTTATGTTATGTGTGCTCTGTTCTAACACATTTATTTTAACAGGAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGGGTAGGGAATCTCTCTTTCCATTGAGAATGTTCTTTTTCTTTTGTTCTTCCTTTACTTTTGGTCTGTCTCCTCTATATTTTTCATGTGCCGGTGTTTTTGTGTTCCTTTTCATGTTATTCTTGTTTAATATTTGATTGACGTCAGCTTATCTGTTGCAGAAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATG</genome_strand>
        <mrna_strand>CAAGG.......................................................................................ATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAG..................................................................................................................................................................................................................................................................................................................................................GAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAG...............................................................................ATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATAT......................................................................................GAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGG..............................................................................................................................................................AAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241868" ref_strand="+" ref_description="SGN-E241868 [cLED-27-K18]">
      <seq>tttcttccgtataacaatagcactcatcactcttatatctactattttctccattttctacttgttgaacggttatttttatgttgtggttgcaccggagatggctgatctgtccatggatttcgatactaacagcgagatatgggattggcaatgtggagaaacttttcttcaagacagtgagaactttggtaagtgtagtgctttctcatatggttataagtggcaaaagatagttaagtggagtcatccatgttaaacagggctgcagcctcaaactgacgtatcaggatgtccatggactggtgtaactgaaaaaaacaaagatatttcctacatgttggttgatgagacaaccccggtaaaggattgtggtgacttgacttgcgatgtcaagggtaaaggatccaaatataacagttatctttcttctaaaactcaacatgtttgaagcatcttatcctgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11182" stop="9307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10882" g_stop="10748" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10747" i_stop="9942" i_length="806">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9941" g_stop="9607" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="470" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E241868" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10882" e_stop="10748"/>
          <exon e_start="9941" e_stop="9607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCGTATAACAATAGCACTCATCACTCTTATATCTACTATTTTCTCCATTTTCTACTTGTTGAACGGTTATTTTTATGTTGTGGTTGCACCGGAGATGGCTGATCTGTCCATGGATTTCGATACTAACAGGTATTTTTTTTTTTGAACGGTTAATGATTATATTTGTGCTATAATGGCTGTATTTTTACACTTCGTCGGTGTGAAAATGCTGTGAATGTATTTTATTTTGTTGATCTCTACTTGCTTGTGATTGAGTTATGTTCATTTGCTTGGATTGAGTATTGTGGTTGTTGTATGAATATGTCAGTTGTATTTTGACTTTATCAGTCATGAAAATGTCTTTTATTTTGACTATCATTTTTATTTTTTTTTAAATGTGATTTGTTTGAGCCCTAGATGAATATATATTGGGTTGTGTGTGATGATTTATGTAGTTGACCACAATTTCGGTGAATTATGATGATATTATGTTCTGGTTTGATTTTATCCGTAGTCCATTCGTTTTCTTTGAACTTCAGAAGAATATATTGTGTTATTACTTAAACGGAGCAACCTGATTAGTATAGTTATCCCTTACTTGCTTGGTATTGAGGCATTGTTGTTGTTATAGTATTAATATATTTGGGTTATTTTTATCGTATGAATGGCACCCGTGCACCTGCTAATTTCGTCTAGCGACTTACTGTTATGCTTCTTAATTTGCATTTTGTATGTGTCATGGGTGATTATGCTTCCCACGTTTGTGTTTCTGACTCTATGTATCAAAAAACACATGTAAATATCAACTTTAAAGATTAATGGTATGAAAAATGAGATTTCTTCAAATAATTCTTTATACATGTTGAGAGGTAGTCTTAATGTATATATTTATGATAAATAGCAAGTTAAGTATTGAAGGGATTCATTCATTGTTTTCTTTGATGATACTATAGCAGCGAGATATGGGATTGGCAATGTGGAGAAACTTTTCTTCAAGACAGTGAGAACTTTGGTAAGTGTAGTGCTTTCTCATATGGTTATAAGTGGCAAAAGATAGTTAAGTGGAGTCATCCATGTTAAACAGGGCTGCAGCCTCAAACTGACGTATCAGGATGTCCATGGACTGGTGTAACTGAAAAAAACAAAGATATTTCCTACATGTTTGTTGATGAGACAACCCCGGTAAAGGATTGTGGTGACTTGACTTGCGATGTCAAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTA</genome_strand>
        <mrna_strand>TTTCTTCCGTATAACAATAGCACTCATCACTCTTATATCTACTATTTTCTCCATTTTCTACTTGTTGAACGGTTATTTTTATGTTGTGGTTGCACCGGAGATGGCTGATCTGTCCATGGATTTCGATACTAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATATGGGATTGGCAATGTGGAGAAACTTTTCTTCAAGACAGTGAGAACTTTGGTAAGTGTAGTGCTTTCTCATATGGTTATAAGTGGCAAAAGATAGTTAAGTGGAGTCATCCATGTTAAACAGGGCTGCAGCCTCAAACTGACGTATCAGGATGTCCATGGACTGGTGTAACTGAAAAAAACAAAGATATTTCCTACATGTTGGTTGATGAGACAACCCCGGTAAAGGATTGTGGTGACTTGACTTGCGATGTCAAGGGTAAAGGATCCAAATATAACAGTTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12822" stop="14131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13122" g_stop="13831" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13122" e_stop="13831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTTGTAGGTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATAT-G--TAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAGCTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12822" stop="14014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13122" g_stop="13714" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13122" e_stop="13714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTTGTAGGTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATAT-G--TAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAGCTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12822" stop="13944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13122" g_stop="13644" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13122" e_stop="13644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTTGTAGGTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATAT-G--TAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAGCTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12893" stop="14168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13193" g_stop="13869" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13193" e_stop="13869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATAT-G-TAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAGCTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGCGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTTAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12893" stop="13848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13193" g_stop="13548" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13193" e_stop="13548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATAT-G-TAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTTAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13339" stop="14598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13639" g_stop="14299" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13639" e_stop="14299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGCGGCGAGTACCCGGTTCAAGATCAATACCGAAGCCAATATCCCTATCTGGTGGCATACCAGGAAAATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAAAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAT</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTC--AATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15437" stop="13427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15137" g_stop="14965" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14964" i_stop="14221" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14220" g_stop="13691" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15137" e_stop="14965"/>
          <exon e_start="14220" e_stop="13691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGTCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGCGAGGTGAATTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGATACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGATAATGGTGGCCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTATATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGCTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTAGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTATGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAACAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGTGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTTTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATTTTCCTGGTATGCCACCAGATAGGGATATTGGCTTCGGTATTGATCTTGAACCGGGTACTCGCCGCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTCCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTTGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGA--TTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13408" stop="14771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13708" g_stop="14471" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13708" e_stop="14471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGCGGCGAGTACCCGGTTCAAGATCAATACCGAAGCCAATATCCCTATCTGGTGGCATACCAGGAAAATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAAAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTC--AATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13408" stop="14670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13708" g_stop="14370" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13708" e_stop="14370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGCGGCGAGTACCCGGTTCAAGATCAATACCGAAGCCAATATCCCTATCTGGTGGCATACCAGGAAAATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAAAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTC--AATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13813" stop="14739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14113" g_stop="14443" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14113" e_stop="14443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14020" stop="15178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14320" g_stop="14878" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14320" e_stop="14878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14024" stop="15336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14324" g_stop="15087" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14324" e_stop="15087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACCTCGCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTG-TGGACTGAAACAAAGTTGAGTGACATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14104" stop="15492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14404" g_stop="15184" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14404" e_stop="15184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACCTCGCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGACATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGG</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14106" stop="15239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14406" g_stop="14939" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14406" e_stop="14939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACCTCGCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14180" stop="15477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="15177" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="15177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACCTCGCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGACATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240248" ref_strand="+" ref_description="SGN-E240248 [cLED-25-L11]">
      <seq>atactcctccctctcaaccataagtgaaaagcaagcattatatctcgaaaacggagacttgcttaacaaaaatggctctccggagctcccgtacggtcaccggcaccggaatacggttcaccttcaaactattcgcgtcttttatcactgtcgctgttttgctttcattagctctctcttctctctacacttcctctgcagatccttctgatctcggcgttaatgaaaaccggaccttatggaaattgggtacactgcctccaggattaatcacattttactccacaacaaagccactggacaaatcatggcatgttttagggcttggttataatccaagtatcagtatggaagagatcaataatgctgcagttgtccactttaatgggaatatgaagccatggcttgatattgcaatggcccaatatcggcctttatggtcgaagtatgtggattatgaaaatgagtacgtgcaggggtgtaattttggtttttaagtacatgagaacaggtggatatttgcttgtcgggttcagcaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15915" stop="19875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16215" g_stop="16435" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16436" i_stop="19253" i_length="2818">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19254" g_stop="19575" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="543" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E240248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16215" e_stop="16435"/>
          <exon e_start="19254" e_stop="19575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCCTCCCTCTCAACCATAAGTGAAAAGCAAGCATTATATCTCGAAAACGGAGACTTGCTTAACAAAAATGGCTCTCCGGAGCTCCCGTACGGTCACCGGCACCGGAATACGGTTCACCTTCAAACTATTCGCGTCTTTTATCACTGTCGCTGTTTTGCTTTCATTAGCTCTCTCTTCTCTCTACACTTCCTCTGCAGATCCTTCTGATCTCGGCGTTGTAAGTACTTACATTCGCAATTTCTCATTTATCTGTATGCGGTTGATTCACTGTCGGTTAACCTATAATCTATGTATTTTTTTTTCTTATTATTATTGACTTGTGATCTCGTGATACTTTACTTGATTTTTTGTTAATTATTGAGTATCTGCATGTTATCAAGTTACTTAGATCTAAATCTGGAAACATATTATTATGATTATTTTTTGTGATTTTTTTCCTTAGGATCTCAATCTGGATGCTTTCATTGTAGACATTTTTACATTATGTTTTATTCTCTAGTTAGTAAGATCTTAGTCTAGAAAGATTTGATTGGTTATTATCATCTCATGAATTTTGAAATACTTGTCCGTGCGTGGTGATTCTAAACTTGTTGTTGAGCTTTTGTGATTCCACGAGGTTTTTATGAGTTCTGAGTTTTAATATGCATGAATTGCATAATTTCTCTTGGATCTTTCTTTATCCCTAAGTAGGTATTGTATTGACAGTGTCAAATGTGATTCAATAGGGAATTTCACGTGATTTTAGAGTAGTTGGATCATTACGAAGGTCGGTTTTGGCTCTAAAATCTGATCCATTGAAGCCGCGGCTAGATCAGATCAAGAAGCAAGCAGATGATCACCGTTCCTTGGTTCTGGCTTATGCTTCCTATGCTCGGAAGCTGAAGCTTGAGAACTCAAAACTTGTTCGAGTTTTTGCTGAGTTATCTAGGAACTTTAGCGATCTGACTTCAAAACCTTCATACCGCCAACTGTTTGACTCGGATGGTAACTCAATGAATGAGTCAGTTCTTAGGCAGTTTGAGAAGGAGGTGAAGGAAAGGATTAAAGTCACCCGGCAAGTTGTTGCTGAGGCGAAAGAGTCATTTGATAATCAATTGAAGATTCAGAAGCTGAAAGATACAATATTTGCTGTCAATGAGCAGCTAATGAAGGCGAAGAAGCAAGGTGCTTTCTCGAGCTTGATTGCTGCCAAGTCTATCCCGAAGAGCGTGCATTGTTTGGCAATGAGGTTAATGGATGAGCGTATCACTCATCCTGATAAGTATACAGATGATGGGAAGCCTACTCCACCAGAATTTGAGGATCCTAGCCTTTATCATTATGCAATCTTCTCTGACAACGTTCTTGCTGCTTCAGTTGTGGTGAATTCAGCAGTTAAAAACTCGAATGACCCATCGAAGCATGTGTTTCACGTGGTGACTGATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTCTTCGTATGTTCCGGTACTTAAACAGCTTGAATCTGCAAAACTTCAGCAGTTTTACTTCGAGAATAAGCTCGAAAATGCAACAAAGGATACAACTAATATGAAATTCAGAAACCCGAAGTATCTCTCCATATTGAACCACATTAGATTCTATTTACCAGAATTGTACCCCAAGTTGCACAGGATATTGTTCTTGGACGATGATATTGTTGTTCAGAAGGATTTGACTGGTCTATGGAAGATAGATATGGATGGTAAGGTGAATGGAGCTGTGGAGACATGTTTTGGTTCATTTCATCGCTATGCACAATACATGAATTTCTCTCATCCATTGATCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTGGTAAGATATACTAGCCATCCATTTCATTTATGTGGCAATTTTATCTGCGGATGAAGTTCAAGAAAGAAAGGACTTTTGAACTTCTTGTCTTAATCCCTGCCATAATATTTATGTGGCTATAAAAGCATATTATTACGAGTAAATGGGAAACTCAAAATTTAAGCGTTTCAAAATGTATAAATGTGTTCATTCTTCTCGAAACAGACTATAGAGGAAAAAGTGTGCCGCATTAAACAGAACATAGGATTAGTAGAGTTATATTTATTCCGGAAATGTTAGATTACAACTTTTTATGGGTAGTTCTTGGGTGTGTTTAGTATGGGGAAAAACAGTTCCCAAAAGGTGTCTTTCAAATTTTCCATTTTTGGTTGGTCGAAATATTTGGAGAACATATTCTAAAGAGAATAAGTTCCTTAGAAATGATGAAAATGACCTCGCTAATAGAAGTACAGAAGACAAGTTCGACACATCACATTTCACATCAATTGTTTCATCCTCACCCTTCAAACACTCCACCACCGTAGTCCATACCCACTAACTTACACCCCTCCCTACCTCCAACTCCAATAGTTTTTTCTAGATTATACACGAATACTTAAGAAAATAATATTGTATCTATGTACCAAATACAAGAAAATTTGTACGAAGGTCACTTATTTTCCTTCGTACAAACCCTCCCGTTGTCTTGCATGTTCTTATTAAGCACGGATCTGCCTTTTTTTCTATCTATAACAAAGAATATAGGTCATGTGCATACATGCATGCTCGCAGGCGTACACATGCATACATATGTGCTCCTGTTTTGACCTCATCTGTTTTGAGCTCTCTACAGAATTTGTCCAGTAGTTATAACCTGTGATCTGAAGAGGTTATTAAGCATGGTGTCTTGCTTCTGGTAGGTTAACTTAGTCACATATACTAGCTTTTGCAGCTATTTCCGTTAAAGCAATTTTTCCAACTTCTAAGGTGTCATGCTGCATCGCATTTTAATTAGTTAGACTTGTACAGTGTGAATTACAAGTTTTTACTATTTTCACTAAAGGGGGCTTCTAATCTTTGCAGAATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTCCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTTTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGAGATCAATAATGCTGCAGTTGTCCACTTTAATGGGAATATGAAGCCATGGCTTGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGTATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTAATTTTGGTTTTTAAGTACATGAGAACAGGTGGATATTTGCTTGTCGGGTTCAGCAAGCTA</genome_strand>
        <mrna_strand>ATACTCCTCCCTCTCAACCATAAGTGAAAAGCAAGCATTATATCTCGAAAACGGAGACTTGCTTAACAAAAATGGCTCTCCGGAGCTCCCGTACGGTCACCGGCACCGGAATACGGTTCACCTTCAAACTATTCGCGTCTTTTATCACTGTCGCTGTTTTGCTTTCATTAGCTCTCTCTTCTCTCTACACTTCCTCTGCAGATCCTTCTGATCTCGGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTCCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTTTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGAGATCAATAATGCTGCAGTTGTCCACTTTAATGGGAATATGAAGCCATGGCTTGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGTATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTAATTTTGGTTTTTAAGTACATGAGAACAGGTGGATATTTGCTTGTCGGGTTCAGCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200789" ref_strand="+" ref_description="SGN-E200789 [cLEC-9-B11]">
      <seq>gaagaagcaaggtgctttctcgagcttgattgctgccaagtctatcccgaagagcgtgcattgtttggcaatgaggttaatggatgagcgtatcactcatcctgataagtatacagatgatgggaagcctactccaccagaatttgaggatcctagcctttatcattatgcaatcttctctgacaacgttcttgctgcttcagttgtggtgaattcagcagttaaaaactcgaatgacccatcgaagcatgtgtttcacgtggtgactgataaaatgaatcttggggctatgcaagttatgttcaagatgaaagaatataatggggcttttatcgaagtgaaggcggtcgaggattataagttcctgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17072" stop="18043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17372" g_stop="17743" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E200789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17372" e_stop="17743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGCAAGGTGCTTTCTCGAGCTTGATTGCTGCCAAGTCTATCCCGAAGAGCGTGCATTGTTTGGCAATGAGGTTAATGGATGAGCGTATCACTCATCCTGATAAGTATACAGATGATGGGAAGCCTACTCCACCAGAATTTGAGGATCCTAGCCTTTATCATTATGCAATCTTCTCTGACAACGTTCTTGCTGCTTCAGTTGTGGTGAATTCAGCAGTTAAAAACTCGAATGACCCATCGAAGCATGTGTTTCACGTGGTGACTGATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTC</genome_strand>
        <mrna_strand>GAAGAAGCAAGGTGCTTTCTCGAGCTTGATTGCTGCCAAGTCTATCCCGAAGAGCGTGCATTGTTTGGCAATGAGGTTAATGGATGAGCGTATCACTCATCCTGATAAGTATACAGATGATGGGAAGCCTACTCCACCAGAATTTGAGGATCCTAGCCTTTATCATTATGCAATCTTCTCTGACAACGTTCTTGCTGCTTCAGTTGTGGTGAATTCAGCAGTTAAAAACTCGAATGACCCATCGAAGCATGTGTTTCACGTGGTGACTGATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697224" ref_strand="+" ref_description="SGN-E697224 [FA01AG03]">
      <seq>gataaaatgaatcttggggctatgcaagttatgttcaagatgaaagaatataatggggcttttatcgaagtgaaggcggtcgaggattataagttcctgaattcttcgtatgttccggtacttaaacagcttgaatctgcaaaacttcagcagttttacttcgagaataagctcgaaaatgctacaaaggatacaactaatatgaaattcagaaacccgaagtatctctccatattgaaccacattagattctatttaccagaattgtaccccaagttgcacaggatattgctcttggacgatgatattgttgttcacaaggatttgactggtctatggaagatagatatggatggtaaggtgaatggagctgtggagacatgtnttggttcatttcatcgctatgcacaatacatgaatttctctcatccattgatcaattctaagttcaatcccaggcgtgtgcatgggcttatggaatgaacttctttgatacggatgcttggaggacggagaagctcacagaggattaccattattggcagactctgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17340" stop="18491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17640" g_stop="18191" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18192" i_stop="18395" i_length="204">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18396" g_stop="18401" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="557" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E697224" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17640" e_stop="18191"/>
          <exon e_start="18396" e_stop="18401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTCTTCGTATGTTCCGGTACTTAAACAGCTTGAATCTGCAAAACTTCAGCAGTTTTACTTCGAGAATAAGCTCGAAAATGCAACAAAGGATACAACTAATATGAAATTCAGAAACCCGAAGTATCTCTCCATATTGAACCACATTAGATTCTATTTACCAGAATTGTACCCCAAGTTGCACAGGATATTGTTCTTGGACGATGATATTGTTGTTCAGAAGGATTTGACTGGTCTATGGAAGATAGATATGGATGGTAAGGTGAATGGAGCTGTGGAGACATGTTTTGGTTCATTTCATCGCTATGCACAATACATGAATTTCTCTCATCCATTGATCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTGGTAAGATATACTAGCCATCCATTTCATTTATGTGGCAATTTTATCTGCGGATGAAGTTCAAGAAAGAAAGGACTTTTGAACTTCTTGTCTTAATCCCTGCCATAATATTTATGTGGCTATAAAAGCATATTATTACGAGTAAATGGGAAACTCAAAATTTAAGCGTTTCAAAATGTATAAATGTGTTCATTCTTCTCGAAACAGACTATA</genome_strand>
        <mrna_strand>GATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTCTTCGTATGTTCCGGTACTTAAACAGCTTGAATCTGCAAAACTTCAGCAGTTTTACTTCGAGAATAAGCTCGAAAATGCTACAAAGGATACAACTAATATGAAATTCAGAAACCCGAAGTATCTCTCCATATTGAACCACATTAGATTCTATTTACCAGAATTGTACCCCAAGTTGCACAGGATATTGCTCTTGGACGATGATATTGTTGTTCACAAGGATTTGACTGGTCTATGGAAGATAGATATGGATGGTAAGGTGAATGGAGCTGTGGAGACATGTNTTGGTTCATTTCATCGCTATGCACAATACATGAATTTCTCTCATCCATTGATCAATTCTAAGTTCAATCCC-AGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATACGGATGCTTGGAGGACGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTG............................................................................................................................................................................................................AATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342155" ref_strand="+" ref_description="SGN-E342155 [cTOF-10-D15]">
      <seq>tcaattctaagttcaatcccaaggcgtgtgcatgggcttatggaatgaacttctttgatttggatgcttggaggagggagaagctcacagaggattaccattattggcagactctgaatgaaaaccggaccttatggaaattgggtacactgccttcaggattaatcacattttactccacaacaaagccactggacaaatcatggcatgtcttagggcttggttataatccaagtatcagtatggaagatatcaataacgctgcacctgtccactttaatgggaatatgaagccatggctggatattgcaatggcccaatatcggcctttatggtcgaaggatgtggattatgaaaatgagtacgtgcaggggtgtcattctggtttttaagtacatgagaacaagtggatatttgcttgtcgggttcagcaagctattcctgcaagcatgcctcaatatgacttgctactgctcagccacactgaaaattagtagccactttctatggcatacgtgtcatcttgtctatacaagtcttattgattgtttcaagcacaacttgagctntagttgctaaattgctatactatgttgactattcttatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17776" stop="20011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18076" g_stop="18191" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18192" i_stop="19253" i_length="1062">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19254" g_stop="19749" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="612" r_length="496" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E342155" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18076" e_stop="18191"/>
          <exon e_start="19254" e_stop="19749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTGGTAAGATATACTAGCCATCCATTTCATTTATGTGGCAATTTTATCTGCGGATGAAGTTCAAGAAAGAAAGGACTTTTGAACTTCTTGTCTTAATCCCTGCCATAATATTTATGTGGCTATAAAAGCATATTATTACGAGTAAATGGGAAACTCAAAATTTAAGCGTTTCAAAATGTATAAATGTGTTCATTCTTCTCGAAACAGACTATAGAGGAAAAAGTGTGCCGCATTAAACAGAACATAGGATTAGTAGAGTTATATTTATTCCGGAAATGTTAGATTACAACTTTTTATGGGTAGTTCTTGGGTGTGTTTAGTATGGGGAAAAACAGTTCCCAAAAGGTGTCTTTCAAATTTTCCATTTTTGGTTGGTCGAAATATTTGGAGAACATATTCTAAAGAGAATAAGTTCCTTAGAAATGATGAAAATGACCTCGCTAATAGAAGTACAGAAGACAAGTTCGACACATCACATTTCACATCAATTGTTTCATCCTCACCCTTCAAACACTCCACCACCGTAGTCCATACCCACTAACTTACACCCCTCCCTACCTCCAACTCCAATAGTTTTTTCTAGATTATACACGAATACTTAAGAAAATAATATTGTATCTATGTACCAAATACAAGAAAATTTGTACGAAGGTCACTTATTTTCCTTCGTACAAACCCTCCCGTTGTCTTGCATGTTCTTATTAAGCACGGATCTGCCTTTTTTTCTATCTATAACAAAGAATATAGGTCATGTGCATACATGCATGCTCGCAGGCGTACACATGCATACATATGTGCTCCTGTTTTGACCTCATCTGTTTTGAGCTCTCTACAGAATTTGTCCAGTAGTTATAACCTGTGATCTGAAGAGGTTATTAAGCATGGTGTCTTGCTTCTGGTAGGTTAACTTAGTCACATATACTAGCTTTTGCAGCTATTTCCGTTAAAGCAATTTTTCCAACTTCTAAGGTGTCATGCTGCATCGCATTTTAATTAGTTAGACTTGTACAGTGTGAATTACAAGTTTTTACTATTTTCACTAAAGGGGGCTTCTAATCTTTGCAGAATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTCCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTTTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGAGATCAATAATGCTGCAGTTGTCCACTTTAATGGGAATATGAAGCCATGGCTTGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGTATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTAATTTTGGTTTTTAAGTACATGAGAACAGGTGGATATTTGCTTGTCGGGTTCAGCAAGCTATTCCTGCAAGCATCCCTCAATATGACTTGTTCCTGCTCAGTCACACTGAAAATTAGTATCCACTTTCTATGTCGTAGGTGTTATCTTGTCTATCCAAGTCTTATTTATTTTTTCGAGCAGTAGTTTAGCTTTAGTTTTCAATTGTCTATACGATGTTTACTATTTTTATGGACC</genome_strand>
        <mrna_strand>TCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTTCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTCTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGATATCAATAACGCTGCACCTGTCCACTTTAATGGGAATATGAAGCCATGGCTGGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGGATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTCATTCTGGTTTTTAAGTACATGAGAACAAGTGGATATTTGCTTGTCGGGTTCAGCAAGCTATTCCTGCAAGCATGCCTCAATATGACTTGCTACTGCTCAGCCACACTGAAAATTAGTAGCCACTTTCTATGGCATACGTGTCATCTTGTCTATACAAGTCTTATTGATTGTTTCAAGCACAACTTGAGCTNTAGTTGCTAAATTGCTATACTATGTTGACTATTCTTATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291633" ref_strand="+" ref_description="SGN-E291633 [cLET-6-L12]">
      <seq>ggaggaagagggcgaggaaactatttaggtggcaggggttatggtcgagatgatttccatggaagaaatgagttcaataacaggggtgggaatcgtgggggttcatcaaaccgtggaggtgaaggatatcggcgagctgacaatacaggtgggcgaatgagtcgtggtggtggaatgtctaatggaacagccaaaggcccggctcctcgctattctgctacagcttgaagagtagtagcttagtataatttatttgaatcgacatttaaaatgatttattgttaaggtgaacagaaattttgtcaagagctatgatgttttctcaaaaagctctttttgctaatcttttttctagttcaatttcttttctttttttctggttaattggataggtggaggaggtaggaatgatttttttttgaaagtagatttcgtgtgtagcatacgggtgtcggagcccctagcaagagattatactcattcgtgggcttttgccttttttgtattgaataattgttgggggcttgtggaaatttatttatttaaacttcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21041" stop="19887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20741" g_stop="20187" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E291633" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20741" e_stop="20187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTTGTCAAGAGCTATGATGTTTTCTCAAAAAGCTCTTTTTGCTAATCTTTTTTCTAGTTCAATTTCTTTTCTTTTTTTCTGGTTAATTGGATAGGTGGAGGAGGTAGGAATGATTTTTTTTTGAAAGTAGATTTCGTGTGTAGCATACGGGTGTCGGAGCCCCTAGCAAGAGATTATACTCATTCGTGGGCTTTTGCCTTTTTTGTATTGAATTATTGTTGGGGGCTTGTGGAAATTTATTTATTTAAACTTCGATT</genome_strand>
        <mrna_strand>GGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTTGTCAAGAGCTATGATGTTTTCTCAAAAAGCTCTTTTTGCTAATCTTTTTTCTAGTTCAATTTCTTTTCTTTTTTTCTGGTTAATTGGATAGGTGGAGGAGGTAGGAATGATTTTTTTTTGAAAGTAGATTTCGTGTGTAGCATACGGGTGTCGGAGCCCCTAGCAAGAGATTATACTCATTCGTGGGCTTTTGCCTTTTTTGTATTGAATAATTGTTGGGGGCTTGTGGAAATTTATTTATTTAAACTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339887" ref_strand="+" ref_description="SGN-E339887 [cTOF-3-M18]">
      <seq>tatgacaaagagtgttgtgcaagtgaatcagcctgctgccacaacaactgatggcccatattccagctcaagagaccattgataacataaatgacacagaagctgatggctactcaatctatataaaaggcctgcctatgagtgcaactgtggcattacttgcggatgagttcaagaagtttgggccaataaaaaatggaggaattcaagtgagaagtaacaggcaacagggattttgttttggattcgtggaatttgaagtggaaagtgctgtgcaaaaagcaatcgaggcttctccagttctcattggtgatcggcaagcagtggtcgaggaaaagaggtctaccaattctcgacttaatgccagaggtggtggtaggtttcaatctggaaggggcggtggattcaggaacgatgttggaggaagagggcgaggaaactatttaggtggcaggggttatggtcgagatgatttccatggaagaaatgagttcaataacaggggtgggaatcgtgggggttcatcaaaccgtggaggtgaaggatatcggcgagctgacaatacaggtgggcgaatgagtcgtggtggtggaatgtctaatggaacagccaaaggcccggctcctcgctattctgctacagcttgaagagtagtagcttagtataatttatttgaatcgacatttaaaatgatttattgttaaggtgaacagaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22770" stop="20141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22470" g_stop="22370" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22267" g_stop="22146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="224" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22145" i_stop="22027" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22026" g_stop="21961" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21117" g_stop="21051" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="357" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20803" g_stop="20441" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="720" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E339887" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22470" e_stop="22370"/>
          <exon e_start="22267" e_stop="22146"/>
          <exon e_start="22026" e_stop="21961"/>
          <exon e_start="21117" e_stop="21051"/>
          <exon e_start="20803" e_stop="20441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCA-GAGACCATTGATAACATAAATGACACAGAAGGCATGCAACTGCAGAGTTTACTTCTACTTTTTCAATCCATTTTTTTCCACTATTATTTGTGTTGATTTCTCATTGTTGCGTTTGTTAAATTGCCTCCAGCAGCTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGGGTATGTTTGTTTGTGCTATTTTCCTGCTTATTAAAGAAAAAATCTGAATGTGTGGATTTTTTTTGCTATATGTCCCTCTGCATTGATGGATTCTCTAATCATAAATTGGTTAATGGCAGCAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAGGTATCTCATCTTTATCCCTCTTGCATGTCATGTATTTTAAGATGGAGCGGGTGAAATCGAGAGGAACAGTAGCTTAAATTTATTTCATCAAGTTCGAGAGTTCTGTGAAACGCATAAGAAATCACTGAGCAGTGAGAATCCATATGCTCTTCTTTTGTTAGTTGTTTTGAGTAACCATATTATCCACCTTCAGCAAATTGATGGCGCTGGATTGATTATTTTTTAAGGTCTTGATTGTATATTTAAATTGAGTCAATTCCTTTACCCCCAATTTGACTATCATTGTTTAGTCATCCTGCAGCGGATGATTAGTAGTTTAATGCCGTGTAATATTCTAACCAGACCCTTAGTTGAAAAGAAAGCTATGTCACTAGGCTGAGTTTAATTGCAATTCAATTAAGAGAATGAAGGATAATTACTTAAGTTTGATTTGTCTGCTAACCTCTGGTTATTATCGTATCGCTAGTTGACCTAAACTTTTGGATGAATTGATTTGTGTTGCCTAGCAATGATTGTATTCCCTGTTGAACGTGTTAAATTCAGGTGGGTTACACGTTTGTGGGTCAAAGTTGGTACTGTTTAAGTTAACTACATGTTGCTTGAATAACCTATCGAAGTGTGGCTGCTTTCAGTTTTATGGGTCCTACTTTGATACCCCTTATCTTTTAGAGCGGAATATGGATATAATTAACATGGTCAATCACATTAATTTGTGTACAATTCTTATTGTCACCTTAGTATGGATATGATTAACATGGTCAATTTGCATTAGTTTTCCCCATCCAATGCATTTCTTTTCACCTGCTCAGTTTACTTTTGGTTTTGTGCTTCATTTTTCTACAGGCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGACGTAAGTTTTAACCATTTTCCTTTTAAGCAATTAGAATTACTGATGCGTTATCACCAGGGAAAAAATGCATATTTGATGAGTTATTGGTGTAGTGAGGGTGTGTTTCCATAGCGGCTGCTTCTGTTCTGATTTTTGGAGAATATTATATTGTTATATCACTTCCCTAGACTAGAATTGTGAAAAGAGAAAAATGCAGAGCAATATTATTACTTCTTCACAGTGAATCTAAATGTCTTTTCTGCTGCAGTTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGTGGATTCAGGAACGATGTTGGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTT</genome_strand>
        <mrna_strand>TATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAAGAGACCATTGATAACATAAATGACACAGAAG......................................................................................................CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG.......................................................................................................................CAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC.......................................................................................................................................................................................................................................................TTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGTGGATTCAGGAACGATGTTGGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268090" ref_strand="+" ref_description="SGN-E268090 [cLEI-15-P8]">
      <seq>tgtggcattacttgcggatgagttcaagaagtttgggccaataaaaaatggaggaattcaagtgagaagtaacaggctacagggattttgttttggattcgtggaatttgaagtggaaagtgctgagcaaaaagcaatcgaggcttctccagttctcattggtgatgggcaagcagtggtcgaggaaaagaggtctaccaattctcgacttaatgccagaggtggtggtaggtttcaatctggaaggggcggaggattcaggaactatgttggaggaagagggccaggatactatctaagcggcacgggttatggtcgatatgatctccatggaagaaatgagttcaataacaggggtgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22521" stop="20350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22221" g_stop="22146" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22145" i_stop="22027" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22026" g_stop="21961" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="142" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21117" g_stop="21051" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="209" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20803" g_stop="20650" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="363" r_length="154" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E268090" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22221" e_stop="22146"/>
          <exon e_start="22026" e_stop="21961"/>
          <exon e_start="21117" e_stop="21051"/>
          <exon e_start="20803" e_stop="20650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGGGTATGTTTGTTTGTGCTATTTTCCTGCTTATTAAAGAAAAAATCTGAATGTGTGGATTTTTTTTGCTATATGTCCCTCTGCATTGATGGATTCTCTAATCATAAATTGGTTAATGGCAGCAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAGGTATCTCATCTTTATCCCTCTTGCATGTCATGTATTTTAAGATGGAGCGGGTGAAATCGAGAGGAACAGTAGCTTAAATTTATTTCATCAAGTTCGAGAGTTCTGTGAAACGCATAAGAAATCACTGAGCAGTGAGAATCCATATGCTCTTCTTTTGTTAGTTGTTTTGAGTAACCATATTATCCACCTTCAGCAAATTGATGGCGCTGGATTGATTATTTTTTAAGGTCTTGATTGTATATTTAAATTGAGTCAATTCCTTTACCCCCAATTTGACTATCATTGTTTAGTCATCCTGCAGCGGATGATTAGTAGTTTAATGCCGTGTAATATTCTAACCAGACCCTTAGTTGAAAAGAAAGCTATGTCACTAGGCTGAGTTTAATTGCAATTCAATTAAGAGAATGAAGGATAATTACTTAAGTTTGATTTGTCTGCTAACCTCTGGTTATTATCGTATCGCTAGTTGACCTAAACTTTTGGATGAATTGATTTGTGTTGCCTAGCAATGATTGTATTCCCTGTTGAACGTGTTAAATTCAGGTGGGTTACACGTTTGTGGGTCAAAGTTGGTACTGTTTAAGTTAACTACATGTTGCTTGAATAACCTATCGAAGTGTGGCTGCTTTCAGTTTTATGGGTCCTACTTTGATACCCCTTATCTTTTAGAGCGGAATATGGATATAATTAACATGGTCAATCACATTAATTTGTGTACAATTCTTATTGTCACCTTAGTATGGATATGATTAACATGGTCAATTTGCATTAGTTTTCCCCATCCAATGCATTTCTTTTCACCTGCTCAGTTTACTTTTGGTTTTGTGCTTCATTTTTCTACAGGCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGACGTAAGTTTTAACCATTTTCCTTTTAAGCAATTAGAATTACTGATGCGTTATCACCAGGGAAAAAATGCATATTTGATGAGTTATTGGTGTAGTGAGGGTGTGTTTCCATAGCGGCTGCTTCTGTTCTGATTTTTGGAGAATATTATATTGTTATATCACTTCCCTAGACTAGAATTGTGAAAAGAGAAAAATGCAGAGCAATATTATTACTTCTTCACAGTGAATCTAAATGTCTTTTCTGCTGCAGTTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGTGGATTCAGGAACGATGTTGGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAA</genome_strand>
        <mrna_strand>TGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG.......................................................................................................................CTACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGAGCAAAAAGCAATCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCCAGTTCTCATTGGTGATGGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC.......................................................................................................................................................................................................................................................TTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGAGGATTCAGGAACTATGTTGGAGGAAGAGGGCCAGGATACTATCTAAGCGGCACGGGTTATGGTCGATATGATCTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540538" ref_strand="+" ref_description="SGN-E540538 [TUS-60-N22](-)">
      <seq>tcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtccaagatggctctgaagtggtagcggaatctgacaacaaaactggggaagttcctaagaagtcatatgcttcaattgtcatgcatctcaaggaaagtgctgcaaccttctcccctcctccagcacctgctgctaggaagcctatgacaaagagtgttgtgcaagtgaatcagcctgctgccacaacaactgatggcccatattccagctcagagaccattgataacataaatgacacagaagctgatggctactcaatctatataaaaggcctgcctatgagtgcaactgtggcattacttgcggatgagttcaagaagtttgggccaataaaaaatggaggaattcaagtgagaagtaacaggggattttgttttggattcgtggaatttgaagtggaaagtgctgtgcaaaaagcaatcgaggcttctccagttctcattggtgatcggcaagcagtggtcgaggaaaagaggtctaccaattctcgacttaatgccagaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23492" stop="20747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23192" g_stop="23064" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22994" g_stop="22759" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="365" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22535" g_stop="22370" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="531" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22267" g_stop="22146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="653" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22145" i_stop="22021" i_length="125">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.504" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22020" g_stop="21961" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="713" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21117" g_stop="21051" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="780" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20803" g_stop="20784" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="800" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E540538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23192" e_stop="23064"/>
          <exon e_start="22994" e_stop="22759"/>
          <exon e_start="22535" e_stop="22370"/>
          <exon e_start="22267" e_stop="22146"/>
          <exon e_start="22020" e_stop="21961"/>
          <exon e_start="21117" e_stop="21051"/>
          <exon e_start="20803" e_stop="20784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATTGTAAGTGGTCATGGCAAAAAATAACTGGATGCATAGTCTATTTAGCGTATACTTTTAAGGGCTTGATTAGCAAAATTTGCACCTCTTTACTCATATTTGCTGTCAATAGTTTAGACATATTAGCATCTGCCAAGTCTAGTTGGTCTGTAGTCAAAGATGATTCAAGGATAGAGAAGGTCTATTCAAGATTTCTTAAGTTAAGAAAATCTGCTATTTATTTCAGGTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAGGCATGCAACTGCAGAGTTTACTTCTACTTTTTCAATCCATTTTTTTCCACTATTATTTGTGTTGATTTCTCATTGTTGCGTTTGTTAAATTGCCTCCAGCAGCTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGGGTATGTTTGTTTGTGCTATTTTCCTGCTTATTAAAGAAAAAATCTGAATGTGTGGATTTTTTTTGCTATATGTCCCTCTGCATTGATGGATTCTCTAATCATAAATTGGTTAATGGCAGCAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAGGTATCTCATCTTTATCCCTCTTGCATGTCATGTATTTTAAGATGGAGCGGGTGAAATCGAGAGGAACAGTAGCTTAAATTTATTTCATCAAGTTCGAGAGTTCTGTGAAACGCATAAGAAATCACTGAGCAGTGAGAATCCATATGCTCTTCTTTTGTTAGTTGTTTTGAGTAACCATATTATCCACCTTCAGCAAATTGATGGCGCTGGATTGATTATTTTTTAAGGTCTTGATTGTATATTTAAATTGAGTCAATTCCTTTACCCCCAATTTGACTATCATTGTTTAGTCATCCTGCAGCGGATGATTAGTAGTTTAATGCCGTGTAATATTCTAACCAGACCCTTAGTTGAAAAGAAAGCTATGTCACTAGGCTGAGTTTAATTGCAATTCAATTAAGAGAATGAAGGATAATTACTTAAGTTTGATTTGTCTGCTAACCTCTGGTTATTATCGTATCGCTAGTTGACCTAAACTTTTGGATGAATTGATTTGTGTTGCCTAGCAATGATTGTATTCCCTGTTGAACGTGTTAAATTCAGGTGGGTTACACGTTTGTGGGTCAAAGTTGGTACTGTTTAAGTTAACTACATGTTGCTTGAATAACCTATCGAAGTGTGGCTGCTTTCAGTTTTATGGGTCCTACTTTGATACCCCTTATCTTTTAGAGCGGAATATGGATATAATTAACATGGTCAATCACATTAATTTGTGTACAATTCTTATTGTCACCTTAGTATGGATATGATTAACATGGTCAATTTGCATTAGTTTTCCCCATCCAATGCATTTCTTTTCACCTGCTCAGTTTACTTTTGGTTTTGTGCTTCATTTTTCTACAGGCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGACGTAAGTTTTAACCATTTTCCTTTTAAGCAATTAGAATTACTGATGCGTTATCACCAGGGAAAAAATGCATATTTGATGAGTTATTGGTGTAGTGAGGGTGTGTTTCCATAGCGGCTGCTTCTGTTCTGATTTTTGGAGAATATTATATTGTTATATCACTTCCCTAGACTAGAATTGTGAAAAGAGAAAAATGCAGAGCAATATTATTACTTCTTCACAGTGAATCTAAATGTCTTTTCTGCTGCAGTTAATGCCAGAGGTGGTGGT</genome_strand>
        <mrna_strand>TCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT...............................................................................................................................................................................................................................GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG......................................................................................................CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG.............................................................................................................................GGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC.......................................................................................................................................................................................................................................................TTAATGCCAGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746568" ref_strand="+" ref_description="SGN-E746568 [GI|47104182]">
      <seq>cagcggaagcagcagtagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggcttgtattcaggttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtccaagatggctctgaagtggtagcggaatctgacaacaaaactggggaagttcctaagaagtcatatgcttcaattgtcatgcatctcaaggaaagtgctgcaaccttctcccctcctccagcacctgctgctaggaagcctatgacaaagagtgttgtgcaagtgaatcagcctgctgccacaacaactgatggcccatattccagctcagagaccattgataacataaatgacacagaagctgatggctactcaatctatataaaaggcctgcctatgagtgcaactgtggcattacttgcggatgagttcaagaagtttgggccaataaaaaatggaggaattcaagtgagaagtaacaggggattttgttttggattcgtggaatttgaagtggaaagtgctgtgcaaaaagcaatcgaggcttctccagttctcattggtgatcggcaagcagtggtcgaggaaaagaggtctaccaattctcgacttaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24597" stop="20747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24297" g_stop="24245" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="191" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="480" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22994" g_stop="22759" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="716" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22535" g_stop="22370" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="882" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22267" g_stop="22146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="1004" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22145" i_stop="22021" i_length="125">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.504" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22020" g_stop="21961" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1064" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21117" g_stop="21051" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1131" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20803" g_stop="20795" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1132" r_stop="1140" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E746568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1140</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24297" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22759"/>
          <exon e_start="22535" e_stop="22370"/>
          <exon e_start="22267" e_stop="22146"/>
          <exon e_start="22020" e_stop="21961"/>
          <exon e_start="21117" e_stop="21051"/>
          <exon e_start="20803" e_stop="20795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATTGTAAGTGGTCATGGCAAAAAATAACTGGATGCATAGTCTATTTAGCGTATACTTTTAAGGGCTTGATTAGCAAAATTTGCACCTCTTTACTCATATTTGCTGTCAATAGTTTAGACATATTAGCATCTGCCAAGTCTAGTTGGTCTGTAGTCAAAGATGATTCAAGGATAGAGAAGGTCTATTCAAGATTTCTTAAGTTAAGAAAATCTGCTATTTATTTCAGGTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAGGCATGCAACTGCAGAGTTTACTTCTACTTTTTCAATCCATTTTTTTCCACTATTATTTGTGTTGATTTCTCATTGTTGCGTTTGTTAAATTGCCTCCAGCAGCTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGGGTATGTTTGTTTGTGCTATTTTCCTGCTTATTAAAGAAAAAATCTGAATGTGTGGATTTTTTTTGCTATATGTCCCTCTGCATTGATGGATTCTCTAATCATAAATTGGTTAATGGCAGCAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAGGTATCTCATCTTTATCCCTCTTGCATGTCATGTATTTTAAGATGGAGCGGGTGAAATCGAGAGGAACAGTAGCTTAAATTTATTTCATCAAGTTCGAGAGTTCTGTGAAACGCATAAGAAATCACTGAGCAGTGAGAATCCATATGCTCTTCTTTTGTTAGTTGTTTTGAGTAACCATATTATCCACCTTCAGCAAATTGATGGCGCTGGATTGATTATTTTTTAAGGTCTTGATTGTATATTTAAATTGAGTCAATTCCTTTACCCCCAATTTGACTATCATTGTTTAGTCATCCTGCAGCGGATGATTAGTAGTTTAATGCCGTGTAATATTCTAACCAGACCCTTAGTTGAAAAGAAAGCTATGTCACTAGGCTGAGTTTAATTGCAATTCAATTAAGAGAATGAAGGATAATTACTTAAGTTTGATTTGTCTGCTAACCTCTGGTTATTATCGTATCGCTAGTTGACCTAAACTTTTGGATGAATTGATTTGTGTTGCCTAGCAATGATTGTATTCCCTGTTGAACGTGTTAAATTCAGGTGGGTTACACGTTTGTGGGTCAAAGTTGGTACTGTTTAAGTTAACTACATGTTGCTTGAATAACCTATCGAAGTGTGGCTGCTTTCAGTTTTATGGGTCCTACTTTGATACCCCTTATCTTTTAGAGCGGAATATGGATATAATTAACATGGTCAATCACATTAATTTGTGTACAATTCTTATTGTCACCTTAGTATGGATATGATTAACATGGTCAATTTGCATTAGTTTTCCCCATCCAATGCATTTCTTTTCACCTGCTCAGTTTACTTTTGGTTTTGTGCTTCATTTTTCTACAGGCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGACGTAAGTTTTAACCATTTTCCTTTTAAGCAATTAGAATTACTGATGCGTTATCACCAGGGAAAAAATGCATATTTGATGAGTTATTGGTGTAGTGAGGGTGTGTTTCCATAGCGGCTGCTTCTGTTCTGATTTTTGGAGAATATTATATTGTTATATCACTTCCCTAGACTAGAATTGTGAAAAGAGAAAAATGCAGAGCAATATTATTACTTCTTCACAGTGAATCTAAATGTCTTTTCTGCTGCAGTTAATGCCA</genome_strand>
        <mrna_strand>CAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT...............................................................................................................................................................................................................................GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG......................................................................................................CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG.............................................................................................................................GGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC.......................................................................................................................................................................................................................................................TTAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698246" ref_strand="+" ref_description="SGN-E698246 [FA05CH04]">
      <seq>tcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtccaagatggctctgaagtggtagcggaatctgacaacaaaactggggaagttcctaagaagtcatatgcttcaattgtcatgcatctcaaggaaagtgctgcaaccttctcccctcctccagcacctgctgctaggaagcctatgacaaagagtgttgtgcaagtgaatcagcctgctgccacaacaactgatggcccatattccagctcagagaccattgataacataaatgacacagaagctgatggctactcaatctatataaaaggcctgcctatgagtgcaactgtggcattacttgcggatgagttcaagaagtttgggccaataaaaaatggaggaattcaagtgagaagtaacaggcaacagggattttgttttggattcgtggaatttgaagtggaaagtgctgtgcaaaaagcaatcgaggcttctccagttctcattggtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23492" stop="20793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23192" g_stop="23064" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22994" g_stop="22759" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="365" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22535" g_stop="22370" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="531" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22267" g_stop="22146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="653" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22145" i_stop="22027" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22026" g_stop="21961" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="719" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21117" g_stop="21093" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="744" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E698246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23192" e_stop="23064"/>
          <exon e_start="22994" e_stop="22759"/>
          <exon e_start="22535" e_stop="22370"/>
          <exon e_start="22267" e_stop="22146"/>
          <exon e_start="22026" e_stop="21961"/>
          <exon e_start="21117" e_stop="21093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATTGTAAGTGGTCATGGCAAAAAATAACTGGATGCATAGTCTATTTAGCGTATACTTTTAAGGGCTTGATTAGCAAAATTTGCACCTCTTTACTCATATTTGCTGTCAATAGTTTAGACATATTAGCATCTGCCAAGTCTAGTTGGTCTGTAGTCAAAGATGATTCAAGGATAGAGAAGGTCTATTCAAGATTTCTTAAGTTAAGAAAATCTGCTATTTATTTCAGGTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAGGCATGCAACTGCAGAGTTTACTTCTACTTTTTCAATCCATTTTTTTCCACTATTATTTGTGTTGATTTCTCATTGTTGCGTTTGTTAAATTGCCTCCAGCAGCTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGGGTATGTTTGTTTGTGCTATTTTCCTGCTTATTAAAGAAAAAATCTGAATGTGTGGATTTTTTTTGCTATATGTCCCTCTGCATTGATGGATTCTCTAATCATAAATTGGTTAATGGCAGCAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAGGTATCTCATCTTTATCCCTCTTGCATGTCATGTATTTTAAGATGGAGCGGGTGAAATCGAGAGGAACAGTAGCTTAAATTTATTTCATCAAGTTCGAGAGTTCTGTGAAACGCATAAGAAATCACTGAGCAGTGAGAATCCATATGCTCTTCTTTTGTTAGTTGTTTTGAGTAACCATATTATCCACCTTCAGCAAATTGATGGCGCTGGATTGATTATTTTTTAAGGTCTTGATTGTATATTTAAATTGAGTCAATTCCTTTACCCCCAATTTGACTATCATTGTTTAGTCATCCTGCAGCGGATGATTAGTAGTTTAATGCCGTGTAATATTCTAACCAGACCCTTAGTTGAAAAGAAAGCTATGTCACTAGGCTGAGTTTAATTGCAATTCAATTAAGAGAATGAAGGATAATTACTTAAGTTTGATTTGTCTGCTAACCTCTGGTTATTATCGTATCGCTAGTTGACCTAAACTTTTGGATGAATTGATTTGTGTTGCCTAGCAATGATTGTATTCCCTGTTGAACGTGTTAAATTCAGGTGGGTTACACGTTTGTGGGTCAAAGTTGGTACTGTTTAAGTTAACTACATGTTGCTTGAATAACCTATCGAAGTGTGGCTGCTTTCAGTTTTATGGGTCCTACTTTGATACCCCTTATCTTTTAGAGCGGAATATGGATATAATTAACATGGTCAATCACATTAATTTGTGTACAATTCTTATTGTCACCTTAGTATGGATATGATTAACATGGTCAATTTGCATTAGTTTTCCCCATCCAATGCATTTCTTTTCACCTGCTCAGTTTACTTTTGGTTTTGTGCTTCATTTTTCTACAGGCTTCTCCAGTTCTCATTGGTGATC</genome_strand>
        <mrna_strand>TCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT...............................................................................................................................................................................................................................GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG......................................................................................................CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG.......................................................................................................................CAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCCAGTTCTCATTGGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540541" ref_strand="+" ref_description="SGN-E540541 [TUS-60-N22]">
      <seq>cagcggaagcagcagtagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggcttgtattcaggttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtccaagatggctctgaagtggtagcggaatctgacaacaaaactggggaagttcctaagaagtcatatgcttcaattgtcatgcatctcaaggaaagtgctgncaccttctcccctccctcagcacctgctgctaggaagcctatgacaaagagtgttgtgcaagtgaatcagcctgctgccacacaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24597" stop="22119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24297" g_stop="24245" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="191" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="480" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22994" g_stop="22759" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="716" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22535" g_stop="22419" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="832" r_length="116" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E540541" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24297" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22759"/>
          <exon e_start="22535" e_stop="22419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATTGTAAGTGGTCATGGCAAAAAATAACTGGATGCATAGTCTATTTAGCGTATACTTTTAAGGGCTTGATTAGCAAAATTTGCACCTCTTTACTCATATTTGCTGTCAATAGTTTAGACATATTAGCATCTGCCAAGTCTAGTTGGTCTGTAGTCAAAGATGATTCAAGGATAGAGAAGGTCTATTCAAGATTTCTTAAGTTAAGAAAATCTGCTATTTATTTCAGGTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGAT</genome_strand>
        <mrna_strand>CAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT...............................................................................................................................................................................................................................GTCATGCATCTCAAGGAAAGTGCTGNCACCTTCTCCCCTCCCTCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCAC-ACAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703490" ref_strand="+" ref_description="SGN-E703490 [FA21CF03]">
      <seq>ctctctctctactcgcgcctctttttcgagatccaccactctctctacagcaaaaccctagaactcaaaccttcctcctccgcatctagagagagaaacacacgaagagagagaaactcaccgactgtacatcaagctttctctctttccacttatctgatccgatataaatccagtgctataaacaggagttcgattgattgacgatggcagcggaagcagcagtagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggcttgtattcaggttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtccaagatggctctgaagtggtagcggaatctgaccacaaaactgggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24919" stop="22486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24619" g_stop="24444" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24443" i_stop="24332" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24331" g_stop="24245" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="401" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="690" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22994" g_stop="22785" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="900" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E703490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24619" e_stop="24444"/>
          <exon e_start="24331" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAGGTATGAATGTTTAATTTTTTTGAATTAAGTTTTTTTTTCTTCACGTATTCGTTCATGTAAGATCACGAGAACAGAGGATTTGAGTTTTTTTTGTGGTTAATTTTGTGTTTAGTGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAG</genome_strand>
        <mrna_strand>CTCTCTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG................................................................................................................TGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACCACAAAACTGGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705046" ref_strand="+" ref_description="SGN-E705046 [FA26AA10]">
      <seq>ctctctactcgcgcctctttttcgagatccaccactctctctacagcaaaaccctagaactcaaaccttcctcctccgcatctagagagagaaacacacgaagagagagaaactcaccgactgtacatcaagctttctctctttccacttatctgatccgatataaatccaggagttcgattgattgacgatggcagcggaagcagcagtagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggcttgtattcaggttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttgaggaggaagtgcctgtgtctgaggtcgtccatgaagtcaagatggctctgaagtggtagcggaatctgacaacaaaactgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24915" stop="22488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24615" g_stop="24444" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24443" i_stop="24320" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24319" g_stop="24245" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="247" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="385" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="674" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22994" g_stop="22788" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="880" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E705046" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24615" e_stop="24444"/>
          <exon e_start="24319" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAGGTATGAATGTTTAATTTTTTTGAATTAAGTTTTTTTTTCTTCACGTATTCGTTCATGTAAGATCACGAGAACAGAGGATTTGAGTTTTTTTTGTGGTTAATTTTGTGTTTAGTGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGG</genome_strand>
        <mrna_strand>CTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG............................................................................................................................GAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGT-CAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704147" ref_strand="+" ref_description="SGN-E704147 [FA23BH09]">
      <seq>ctctactcgcgcctctttttcgagatccaccactctctctacagcaaaaccctagaactcaaaccttcctcctccgcatctagagagagaaacacacgaagagagagaaactcaccgactgtacatcaagctttctctctttccacttatctgatccgatataaatccagtgctataaacaggagttcgattgattgacgatggcagcggaagcagcagtagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggcttgtattcaggttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctngagcaagcactccaccagcagaggaagctgacgtgggagaagtttacaacccatctgagaatggtgatgtgcttattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24913" stop="22572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24613" g_stop="24444" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24443" i_stop="24332" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24331" g_stop="24245" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="257" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="395" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="684" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22994" g_stop="22872" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="807" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E704147" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24613" e_stop="24444"/>
          <exon e_start="24331" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAGGTATGAATGTTTAATTTTTTTGAATTAAGTTTTTTTTTCTTCACGTATTCGTTCATGTAAGATCACGAGAACAGAGGATTTGAGTTTTTTTTGTGGTTAATTTTGTGTTTAGTGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCT-GAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTG</genome_strand>
        <mrna_strand>CTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG................................................................................................................TGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTNGAGC-AAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291268" ref_strand="+" ref_description="SGN-E291268 [cLET-2-A21]">
      <seq>agcggaagcagcattagcagtagcggcagtagcaccagtttctgctcaagttgttgcgaatgcttttgtgcagcaatactatcatatattgcatcattcgccggggctagtattcaagttttaccaggatataagcaagcttggacgtcctgaagaggatggatccatgggtatcactacgacaatgcaagcaataaatgataagatactctcactcaactatggagatctcagagcagagatcaagtctgtggatgcccaagaatcctttaatggcggggtgcatgtccttgtaactggatatttgactgggaaagacaacttggtccggaatttctgtcaaactttcttcctagcaccacaagatagggggtactttgtcttgaatgatatgtttcgatatgtagagactgccagtcagcatgatacagtccaggttccagtaactgatgctgtggctcctgtcacaccagagcaaattgttgcagatccacctacagcaccacagaatcacattcctgagcaaagcactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24596" stop="22639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24296" g_stop="24245" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24162" g_stop="24025" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="190" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23352" g_stop="23064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="479" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22994" g_stop="22939" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="535" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E291268" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24296" e_stop="24245"/>
          <exon e_start="24162" e_stop="24025"/>
          <exon e_start="23352" e_stop="23064"/>
          <exon e_start="22994" e_stop="22939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTTGTACGTATATAAATCATTGCATTTAGTTTGTTTTGCTTTGAGCTGTGGATATTGATTGAGTTCGATATGTTTGTGTATATAGGTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAAGTAAGTGCAAGTGAACTGATCTTCGCATATACTATGGTCCATGTTCTTCCCTTTTCCCCTATATTGATTTTGTTGCAGACTTGTGAACAATGTGCCTAAATATTTGTTTGTTGGATGAGGGAGTTGATTGTGTGAAGAGTTAAGGATTTGAAATCTGTTGAATTTTTTTTATTGCTTGTAGGTAAAGATCCGTTTTTAGATGAAATTTCATTAATCATCATCATTGTTAGGTGATCAGATGTAAAAAATACATTTTTCTAATTAATATCTGCATATTTTAACGGAAAAAATGGTTCTTTATCCAAATGCCTTAATTTGAATTTGCACATATATTGAAAAGCCTGAAACTGGATTATTGTTCTTAGTTGAGAGAGCATATTCTATATCGACATTTAGTTTTATGTAGAATGATGTAGAGTGAGAAGTTATACTTATGGGCTTTGTTAGCTTTGGAGTTGTGTATACTTGAATTTAGATGCAGGCCTTTTGGGTTTGGAGAAGATTTAATTACCTTTGAATGACTGAAACTAGTCAAACTTGAGAGGTTCACCTTTAGCTACAATAGGGAGATAGAGTTATCACTTTTTGATGCTCTGTCTTGTTTACTCAAATGATCTTTTGAATTAATAATGCCAGAGTTGCTAATGTTCTTTTGTTTGATGTCAAACACAGGCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAAGTAATTGCAACAATCTTTGGTTCTTTTGGCAATACCGTAATAAGCAACTGACATTTTTTCTTTTACCAGTTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCA</genome_strand>
        <mrna_strand>AGCGGAAGCAGCATTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT..................................................................................GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTAGTATTCAAGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA.....................................................................TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352836" ref_strand="+" ref_description="SGN-E352836 [cTOS-11-E20]">
      <seq>tcaaaatgaatacagcagtgatggagagacgacaatgtactctgcggaaactgctgaaagcagaaactatccaagtcctaaaggaggaaggtttcatcaagtaggaagaagccaaagttgtgttaactacaatagatgggggccggtttcaaaaaactcagcagctcgtagggctaaccaagaacagaagaggaacattatgcaaggaagaaaggtacactcccaaggtacaacttcacataggagtaatgactattacagcccgacagtatcttcaatcatgaagaaacggaacaacatggaggcacaaatcagaccaccacgtctaagtgctggaaactcatcaccaagatggatgttctgattgataaattctgaaaaaagaactcattctttataccacactctcctttttttgagcttatactgagacttcattgcaaagaaattaagaaagctggagaaaactcgagcgaaggcagcttactgattttcgatagcaggtgctacaggtagttgttcttccactggaacttcaatgacattctgtggactttatgttggagaaaagatctcagaagcatcttcaacagtcccaacattttcaccagttaaggattggctagtaactgctgcttatcagcaaaatagatgaatgcaacatagaattcaagtgtgacagaaagtgaaaccaaagcaaatgttcgatactgtgttctctgagataaataataccctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24960" stop="26301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25260" g_stop="26001" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E352836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25260" e_stop="26001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATGAATACAGCAGTGATGGAGAGACGACAATGTACTCTGCGGAAACTGCTGAAAGCAGAAACTATCCAAGTCCTAAAGGAGGAAGGTTTCATCAAGTAGGAAGAAGCCAAAGTTGTGTTAACTACAATAGATGGGGGCCGGTTTCAAAAAACTCAGCAGCTCGTAGGGCTAACCAAGAACAGAAGAGGAACATTATGCAAGGAAGAAAGGTACACTCCCAAGGTACAACTTCACATAGGAGTAATGACTATTACAGCCCGACAGTATCTTCAATCATGAAGAAACGGAACAACATGGAGGCACAAATCAGACCACCACGTCTAAGTGCTGGAAACTCATCACCAAGATGGATGTTCTGATTGATAAATTCTGAAAAAAGAACTCATTCTTTATACCACACTCTCCTTTTTTTGAGCTTATACTGAGACTTCATTGCAAAGAAATTAAGAAAGCTGGAGAAAACTCGAGCGAAGGCAGCTTACTGATTTTCGATAGCAGGTGCTACAGGTAGTTGTTCTTCCACTGGAACTTCAATGACATTCTGTGGACTTTATGTTGGAGAAAAGATCTCAGAAGCATCTTCAACAGTCCCAACATTTTCACCAGTTAAGGATTGGCTAGTAACTGCTGCTTATCAGCAAAATAGATGAATGCAACATAGAATTCAAGTGTGACAGAAAGTGAAACCAAAGCAAATGTTCGATACTGTGTTCTCTGAGATAAATAATACCCTGGAA</genome_strand>
        <mrna_strand>TCAAAATGAATACAGCAGTGATGGAGAGACGACAATGTACTCTGCGGAAACTGCTGAAAGCAGAAACTATCCAAGTCCTAAAGGAGGAAGGTTTCATCAAGTAGGAAGAAGCCAAAGTTGTGTTAACTACAATAGATGGGGGCCGGTTTCAAAAAACTCAGCAGCTCGTAGGGCTAACCAAGAACAGAAGAGGAACATTATGCAAGGAAGAAAGGTACACTCCCAAGGTACAACTTCACATAGGAGTAATGACTATTACAGCCCGACAGTATCTTCAATCATGAAGAAACGGAACAACATGGAGGCACAAATCAGACCACCACGTCTAAGTGCTGGAAACTCATCACCAAGATGGATGTTCTGATTGATAAATTCTGAAAAAAGAACTCATTCTTTATACCACACTCTCCTTTTTTTGAGCTTATACTGAGACTTCATTGCAAAGAAATTAAGAAAGCTGGAGAAAACTCGAGCGAAGGCAGCTTACTGATTTTCGATAGCAGGTGCTACAGGTAGTTGTTCTTCCACTGGAACTTCAATGACATTCTGTGGACTTTATGTTGGAGAAAAGATCTCAGAAGCATCTTCAACAGTCCCAACATTTTCACCAGTTAAGGATTGGCTAGTAACTGCTGCTTATCAGCAAAATAGATGAATGCAACATAGAATTCAAGTGTGACAGAAAGTGAAACCAAAGCAAATGTTCGATACTGTGTTCTCTGAGATAAATAATACCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550962" ref_strand="+" ref_description="SGN-E550962 [TUS-54-J11]">
      <seq>aactgtaactgttgaaactatcgccaatctcttgcaggaggttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcanaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27861" stop="31619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28161" g_stop="28197" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28741" g_stop="28874" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="171" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="285" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="381" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="469" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31253" g_stop="31319" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="536" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E550962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28161" e_stop="28197"/>
          <exon e_start="28741" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAGGTCTGATTTATGGTTTTTATTTTTGTGTTACTGAATATTAGCTCTTGATTTGTCAATGCATGTCTATTTCTCGAAATCATCGCCTTTGGGTTTTTTTTGTGTTACTCAACTGTATCATTGAATATGAACTCTTGATTTGTCAATGCATGTCTGTTTCTCGAAAGTATCGCCAATCTGTTGCAGGTTCAACTTTATGAAAAGATTGATTCTTTCGTGTTAATCAACTCTTTCCCTGAATATAAGTTCTTGATTTGTCAATGCATATCTTTCTTCATCTTATTTTGGTACTTCTCTTCGAGCTGGAATGGTGGAGGTATAAATTTTTTTGCTTGCTATGTCAGTGCTCTCTTATAGTAAATAAGATTTTTGAATGTTGTGGTCTTGTAGAAAAGTGAAATTAAAGAGTCTCCAAAAAAGGAGAGTCATTCTTTTTGAAAGGGACCAAAAAGGAAAATAAGATAAACAAATTTAAACGAGGGACTATACTCATTTGGTTTATGTATGATTATATGGGCATAAATGTATCCCAACTCTGTGATGTAGGAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTG</genome_strand>
        <mrna_strand>AACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCANAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688725" ref_strand="+" ref_description="SGN-E688725 [t3_tus_54_J11]">
      <seq>aactgtaactgttgaaactatcgccaatctcttgcaggaggttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcanaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27861" stop="31619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28161" g_stop="28197" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28741" g_stop="28874" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="171" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="285" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="381" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="469" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31253" g_stop="31319" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="536" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E688725" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28161" e_stop="28197"/>
          <exon e_start="28741" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAGGTCTGATTTATGGTTTTTATTTTTGTGTTACTGAATATTAGCTCTTGATTTGTCAATGCATGTCTATTTCTCGAAATCATCGCCTTTGGGTTTTTTTTGTGTTACTCAACTGTATCATTGAATATGAACTCTTGATTTGTCAATGCATGTCTGTTTCTCGAAAGTATCGCCAATCTGTTGCAGGTTCAACTTTATGAAAAGATTGATTCTTTCGTGTTAATCAACTCTTTCCCTGAATATAAGTTCTTGATTTGTCAATGCATATCTTTCTTCATCTTATTTTGGTACTTCTCTTCGAGCTGGAATGGTGGAGGTATAAATTTTTTTGCTTGCTATGTCAGTGCTCTCTTATAGTAAATAAGATTTTTGAATGTTGTGGTCTTGTAGAAAAGTGAAATTAAAGAGTCTCCAAAAAAGGAGAGTCATTCTTTTTGAAAGGGACCAAAAAGGAAAATAAGATAAACAAATTTAAACGAGGGACTATACTCATTTGGTTTATGTATGATTATATGGGCATAAATGTATCCCAACTCTGTGATGTAGGAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTG</genome_strand>
        <mrna_strand>AACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCANAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254976" ref_strand="+" ref_description="SGN-E254976 [cLEG-33-N21]">
      <seq>actgtaactgttgaaactatcgccaatctcttgcaggaggttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagaacccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27862" stop="31994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28162" g_stop="28197" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28741" g_stop="28874" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="170" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="284" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="380" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="468" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="537" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31647" g_stop="31694" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="585" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E254976" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28162" e_stop="28197"/>
          <exon e_start="28741" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="31694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAGGTCTGATTTATGGTTTTTATTTTTGTGTTACTGAATATTAGCTCTTGATTTGTCAATGCATGTCTATTTCTCGAAATCATCGCCTTTGGGTTTTTTTTGTGTTACTCAACTGTATCATTGAATATGAACTCTTGATTTGTCAATGCATGTCTGTTTCTCGAAAGTATCGCCAATCTGTTGCAGGTTCAACTTTATGAAAAGATTGATTCTTTCGTGTTAATCAACTCTTTCCCTGAATATAAGTTCTTGATTTGTCAATGCATATCTTTCTTCATCTTATTTTGGTACTTCTCTTCGAGCTGGAATGGTGGAGGTATAAATTTTTTTGCTTGCTATGTCAGTGCTCTCTTATAGTAAATAAGATTTTTGAATGTTGTGGTCTTGTAGAAAAGTGAAATTAAAGAGTCTCCAAAAAAGGAGAGTCATTCTTTTTGAAAGGGACCAAAAAGGAAAATAAGATAAACAAATTTAAACGAGGGACTATACTCATTTGGTTTATGTATGATTATATGGGCATAAATGTATCCCAACTCTGTGATGTAGGAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACT</genome_strand>
        <mrna_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGAACCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255754" ref_strand="+" ref_description="SGN-E255754 [cLEG-36-H4]">
      <seq>actgtaactgttgaaactatcgccaatctcttgcaggaggttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27862" stop="31612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28162" g_stop="28197" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28741" g_stop="28874" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="170" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="284" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="380" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="468" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31253" g_stop="31312" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="528" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E255754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28162" e_stop="28197"/>
          <exon e_start="28741" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAGGTCTGATTTATGGTTTTTATTTTTGTGTTACTGAATATTAGCTCTTGATTTGTCAATGCATGTCTATTTCTCGAAATCATCGCCTTTGGGTTTTTTTTGTGTTACTCAACTGTATCATTGAATATGAACTCTTGATTTGTCAATGCATGTCTGTTTCTCGAAAGTATCGCCAATCTGTTGCAGGTTCAACTTTATGAAAAGATTGATTCTTTCGTGTTAATCAACTCTTTCCCTGAATATAAGTTCTTGATTTGTCAATGCATATCTTTCTTCATCTTATTTTGGTACTTCTCTTCGAGCTGGAATGGTGGAGGTATAAATTTTTTTGCTTGCTATGTCAGTGCTCTCTTATAGTAAATAAGATTTTTGAATGTTGTGGTCTTGTAGAAAAGTGAAATTAAAGAGTCTCCAAAAAAGGAGAGTCATTCTTTTTGAAAGGGACCAAAAAGGAAAATAAGATAAACAAATTTAAACGAGGGACTATACTCATTTGGTTTATGTATGATTATATGGGCATAAATGTATCCCAACTCTGTGATGTAGGAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGG</genome_strand>
        <mrna_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260430" ref_strand="+" ref_description="SGN-E260430 [cLEG-66-G19]">
      <seq>actgtaactgttgaaactatcgccaatctcttgcaggaggttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27862" stop="29360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28162" g_stop="28197" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28741" g_stop="28874" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="170" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29060" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="263" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E260430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28162" e_stop="28197"/>
          <exon e_start="28741" e_stop="28874"/>
          <exon e_start="28968" e_stop="29060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAGGTCTGATTTATGGTTTTTATTTTTGTGTTACTGAATATTAGCTCTTGATTTGTCAATGCATGTCTATTTCTCGAAATCATCGCCTTTGGGTTTTTTTTGTGTTACTCAACTGTATCATTGAATATGAACTCTTGATTTGTCAATGCATGTCTGTTTCTCGAAAGTATCGCCAATCTGTTGCAGGTTCAACTTTATGAAAAGATTGATTCTTTCGTGTTAATCAACTCTTTCCCTGAATATAAGTTCTTGATTTGTCAATGCATATCTTTCTTCATCTTATTTTGGTACTTCTCTTCGAGCTGGAATGGTGGAGGTATAAATTTTTTTGCTTGCTATGTCAGTGCTCTCTTATAGTAAATAAGATTTTTGAATGTTGTGGTCTTGTAGAAAAGTGAAATTAAAGAGTCTCCAAAAAAGGAGAGTCATTCTTTTTGAAAGGGACCAAAAAGGAAAATAAGATAAACAAATTTAAACGAGGGACTATACTCATTTGGTTTATGTATGATTATATGGGCATAAATGTATCCCAACTCTGTGATGTAGGAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGA</genome_strand>
        <mrna_strand>ACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257522" ref_strand="+" ref_description="SGN-E257522 [cLEG-45-I21]">
      <seq>ttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattactatagattataggcgtgaatgtcagcatgatgatgttgtcgattcccttacaagcgttgagcctattgaggatgctgatgccttagagagtcacgggtctaatggatctgctactgctccaaaggatgtaaacaagagcttcttgcatttgttgagattatcaagcgatggacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28445" stop="32170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28745" g_stop="28874" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="244" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="340" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="428" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="497" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31647" g_stop="31870" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="721" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E257522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28745" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="31870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGA</genome_strand>
        <mrna_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264751" ref_strand="+" ref_description="SGN-E264751 [cLEG-71-E16]">
      <seq>ttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattactatagattataggcgtgaatgtcagcatgatgatgttgtcgattcccttacaagcgttgagcctattgaggatgctgatgccttagagagtcacgggtctaatggatctgctactgctcccaaggatgtaaacaagagcttcttgcatttgttgagattatcaagcgatggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28445" stop="32168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28745" g_stop="28874" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="244" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="340" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="428" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="497" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31647" g_stop="31868" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="719" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E264751" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28745" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="31868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTT</genome_strand>
        <mrna_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCCAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257836" ref_strand="+" ref_description="SGN-E257836 [cLEG-39-K20]">
      <seq>ttggatgcaaccatgctcaaagtgttggattttcaacggatggatttgcaactacccatagcatgagaaaattacatcttatatgggttactgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgcgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaaaagctgatctggacatgaatcagcacgtaaacaatggcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28445" stop="31994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28745" g_stop="28874" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="244" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="340" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="428" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="497" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31647" g_stop="31694" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="545" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E257836" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28745" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="31694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACT</genome_strand>
        <mrna_strand>TTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGCGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAAAGCTGATCTGGACATGAATCAGCACGTAAACAATGGCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245368" ref_strand="+" ref_description="SGN-E245368 [cLEF-53-D12]">
      <seq>tgcaactacccatagcatgagaaaattgggtcttatatgggttgctgctcgcatgtacattgagatctataagtaccctgcttggagtgatgttgttgaaatagagacttggtgccaaagtgaaggcaggattgggactagacgcgattggattctcaaagactgcgctactggtgaagtcattggaagagcaaccagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattactatagattataggcgtgaatgtcagcatgatgatgttgtcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28491" stop="32037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28791" g_stop="28874" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93">
            <donor d_prob="0.701" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28968" g_stop="29081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="198" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29612" g_stop="29707" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="294" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31091" g_stop="31178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="382" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="451" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31647" g_stop="31737" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="542" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E245368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28791" e_stop="28874"/>
          <exon e_start="28968" e_stop="29081"/>
          <exon e_start="29612" e_stop="29707"/>
          <exon e_start="31091" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="31737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTGGTAATCCTTTTATACCTTGCAAGTGTTCACTATAATGGTTTATTCTGCAAGGCTGTTGTACCCATGGTTAATGTTGTGTGTGGTATGGAACAGGAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAGGTGCAGAATTTAAGTTTATACTCAATAATAAACCTCATAGAAAGAATATAGATAGCACTAGAAGTGATAATATCCTGTTTAATGCACATCTCCAAGTGGACATGTATACTTCTAGGCATGCAGTATTCCAGGCTTAAGTATATTTGTTGCAAATACTTAACATAGTTGATACATATTATTTTTCTGTGAATTGCTTATCTTTTACACAAGTGTGGTGTAGTAGTTTTTATGCCCACTTGGTTATTAAATACATTTCCTGCAAAGGCAGCTTTTGGAACAAATGAATTCCTTTTGTAAGTTACTGCATAAAGCTTAAATTACATCCATGGGGTGTTTTGCTTCTAAATCAACCCGAGTCAATATAATTACTTTGTGAAGAAGTCTGTAATTTGGCAGTGTTAATGGTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTTGTATCTTAGATGGTTCGAGGCCTATAGCCCTAAGGTAATTGGCCAAGTAATCCACGTGCATGATAAAAGAGCATTCCAGCTTTAGTGTACTTTGGTCCACTTAATCCCTCTTTCATGGTCACATATCTTTCTGGCAAGGAACGGGAAATATTTCGCCCGTTACATTAATCCAATTTACATTTTATTTGGGAAAAACATCTTTGTTTTTTGTTCAAAAGATTCCTATACCATTATTAAAAGGATCATCAATGGAAACTTATCCTTCTAACTATCATAATTTACATTAGACCTTGAAACCATTTGTTCTGCTTTTCTGGAAAACAAAGGGTTGTTTCTAAAGAACAATTTTTCCAACATATGCATAACCAATTCTTCAAAACCAAATCAAAGGATGTGCCTGCGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATT</genome_strand>
        <mrna_strand>TGCAACTACCCATAGCATGAGAAAATTGGGTCTTATATGGGTTGCTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG.............................................................................................GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350265" ref_strand="+" ref_description="SGN-E350265 [cTOS-4-P7]">
      <seq>gttttctcgagtatcaaggtcacagataccaccgtctaacaatctgtaaatcctttctttttcctatattgcttctcgagttattctacaaaaattaaattaggatgttatgatatctgattgcagcaagtggctcatgatgaaccaggacacaagacggcttcaaaaggtcactgatgaagttcgtgatgagctggagctctattttccaaaagaactgaggttaacttaggttcctctttttcattttttttctttcccttccctatcctggaacttataatttcctaagtggggtaaagtattcttgtaaactataactgtaaataaggaaactgttcattgaactcttgaaattatcatacaacggttttgaatggtgttaatgggtacatgattcttggtgctggtaaatgaaaatgtagctgttaaatactatcataagttacacatatatctaacataaatggtttgaatcatagacattacagattcttaattattacatctatttcttggtatttgacgtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29186" stop="30320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29486" g_stop="30020" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E350265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29486" e_stop="30020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTT</genome_strand>
        <mrna_strand>GTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540304" ref_strand="+" ref_description="SGN-E540304 [TUS-60-I4]">
      <seq>cgcatacacatggttttgcaaaaagaaaatagaattagaaaaagaactaaaccaatctgtctattatccagtttctttctactctggtgcaagcttgtttcccagacgtatattcactttagttagactgtcaggcaatcatatgtggtgtcttctctatcaagtcaactccaatggtcaattttgcatttttatatttcattgaagtaatacgccaagtcattctgacttcctcttctatttactcactatgtttaaatcaagtagagtgagggtggctagtgagagagaaattagacaaagggacgaaatcagtcttgaacttctacgtttcccaaataacttgagggtacagggatttcctgagagatttgccaccattctgtaattagactgaaaggaggaaacttagggatctgagaagtactacactttggagaagcaaaaagaaaaactacccctcccctccttcaaccaaacatattttaaagtttatatacttcataacagcaccaaccacaattgtgttatgtgtaacgtgctatttcatatcatctgcaatgtcactgaccatgatttcggcacatgtaagtttgagtgttgtattttattggcagtaatgttattgaaaagtggcactctgttcttgtttgactgttcacaattccaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30121" stop="31588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30421" g_stop="31178" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31253" g_stop="31288" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="794" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E540304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30421" e_stop="31178"/>
          <exon e_start="31253" e_stop="31288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTA</genome_strand>
        <mrna_strand>CGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286761" ref_strand="+" ref_description="SGN-E286761 [cLES-14-F18]">
      <seq>gcatacacatggttttgcaaaaagaaaatagaattagaaaaagaactaaaccaatctgtctattatccagtttctttctactctggtgcaagcttgtttcccagacgtatattcactttagttagactgtcaggcaatcatatgtggtgtcttctctatcaagtcaactccaatggtcaattttgcatttttatatttcattgaagtaatacgccaagtcattctgacttcctcttctatttactcactatgtttaaatcaagtagagtgagggtggctagtgagagagaaattagacaaagggacgaaatcagtcttgaacttctacgtttcccaaataacttgagggtacagggatttcctgagagatttgccaccattctgtaattagactgaaaggaggaaacttagggatctgagaagtactacactttggagaagcaaaaagaaaaactacccctcccctccttcaaccaaacatattttaaagtttatatacttcataacagcaccaaccacaattgtgttatgtgtaacgtgctatttcatatcatctgcaatgtcactgaccatgatttcggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30122" stop="31305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30422" g_stop="31005" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E286761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30422" e_stop="31005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCAC</genome_strand>
        <mrna_strand>GCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540301" ref_strand="+" ref_description="SGN-E540301 [TUS-60-I4](-)">
      <seq>tttattggcagtaatgttattgaaaagtggcactctgttcttgtttgactgttcacaattccaggttagcttttcctgaggagaataatggcagcctaaagaaaatagcaaaacttgaagatcccgctgagtattcgaagctaggaatggtgccacgaagagctgatctggacatgaatcagcacgtaaacaatgtcacttacattggatgggttcttgagagtattcctcaagaaatcattgatacacatgaactggaaacaattactatagattataggcgtgaatgtcagcatgatgatgttgtcgattcccttacaagcgttgagcctattgaggatgctgatgccttagagagtcacgggtctaatggatctgctactgttccaaaggatgtaaacaagagcttcttgcatttgttgagattatcaagcgatggacttgaaataaataggtgtcgaactgaatggagaaagaagtctgctaggacataagattcaatgtgttctattgttcattgtagcctaagtactcggtggaggagctcccttttgttactttgttttccaacttttcgtgtctgtctcttttcttgtctttctgtagtctttattgcttccgttctttctttttcctagagctctggatagatggttgagatgaggcttcattgatttgtactaatgttttagttacgcaaataaacaggatgaggaaaatagtgtgctagtatgggaacagattatttgtatcatataatttatgacatgtatctcctgcttgtttgctaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30727" stop="66340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31027" g_stop="31178" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31253" g_stop="31321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="221" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31647" g_stop="32220" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="795" r_length="574" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32221" i_stop="32319" i_length="99">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32320" g_stop="32344" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="820" r_length="25" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E540301" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31027" e_stop="31178"/>
          <exon e_start="31253" e_stop="31321"/>
          <exon e_start="31647" e_stop="32220"/>
          <exon e_start="32320" e_stop="32344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTGGTAGGTATCATTTTAAAATCCTGAGTTCAATGACATTCTTTTTCAAGCACTCAGGATACTCGTTTTGTTGGCAGCCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAGGTTTGTATATGTTTCCTCTCTGTAGATGAATAATTGGACGTGGCCAACTATACATATGATGCAATAATTCATCTTTTATGTTCTCCCCACTGACACTTCTTTTCTTCTGTTACCATTGTAAATTTAACATGTGCAGAGATTTTTTAGGGTCCTTGTTGTCTTGCTCATAGAAATTTTGTTGCTCTTCATTGTTATAGATAGTTAGACTAGGCATGGGGAAGTCATTAGTATTTAGAAGTAACTTCTAAAACAAGGGAAGTCTTATGTTTTACATCTATGGACTAAATTCTCTATTTTGTTAACCAAAAAACTTTTCTGCTGGCAGAGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGAAATAAATAGGTGTCGAACTGAATGGAGAAAGAAGTCTGCTAGGACATAAGATTCAATGTGTTCTATTGTTCATTGTAGCCTAAGTACTCGGTGGAGGAGCTCCCTTTTGTTACTTTGTTTTCCAACTTTTCGTGTCTGTCTCTTTTCTTGTCTTTCTGTAGTCTTTATTGCTTCCGTTCTTTCTTTTTCCTAGAGCTCTGGATAGATGGTTGAGATGAGGCTTCATTGATTTGTACTAATGTTTTAGTTACGCAAATAAACAGGATGAGGAAAATAGTGTGCTAGTATGGGAACAGATTATTTGTATCATATAATTTATGACATGTATCTCCTGCTTGTTTGCTATTTATATAACCTTTTAAATCTCAAAGTTAGTTGTCAAAATAACTGTTTATTGAAGATATATCTGTATATATGCTCTAATAACGTCTTAAGGGATAAAGATGGAGATAAGAAAGAAACTGTACAGGTGAG</genome_strand>
        <mrna_strand>TTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG..........................................................................CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG.....................................................................................................................................................................................................................................................................................................................................AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGTTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGAAATAAATAGGTGTCGAACTGAATGGAGAAAGAAGTCTGCTAGGACATAAGATTCAATGTGTTCTATTGTTCATTGTAGCCTAAGTACTCGGTGGAGGAGCTCCCTTTTGTTACTTTGTTTTCCAACTTTTCGTGTCTGTCTCTTTTCTTGTCTTTCTGTAGTCTTTATTGCTTCCGTTCTTTCTTTTTCCTAGAGCTCTGGATAGATGGTTGAGATGAGGCTTCATTGATTTGTACTAATGTTTTAGTTACGCAAATAAACAGGATGAGGAAAATAGTGTGCTAGTATGGGAACAGATTATTTGTATCATATAATTTATGACATGTATCTCCTGCTTGTTTGCTAAAAAA...................................................................................................AAAAAAAAAAAACTCGAGGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706776" ref_strand="+" ref_description="SGN-E706776 [FA30DF02]">
      <seq>gtgaattcccttttcaagcactctttttctcgtcggagattcttcgccggagaaaggaaactcggttattcatcacctgatagtccgttgagatgggaagcagcagcggtagcgatgtagaagcgggattcgcgaagctacaaggtgaagatttcgagtattacatgcaaacttactccataatccttggccggaattccaaaaaatcaacggtagatgtcgacttatcatctctcggtggcggaatgaacatctcccgccaccatgctcgcatcttctacgacttccaacgacgtcgttttgccctcgaagtactgggcaaaaacgggtgttcagttgaaggtgttcttcaccttcccggtaccccacccatcaagctagattctcaagaccttcttcagatcggagataaagagttctatttcctccttccaattcgtagcatccttggtgggtccaggggacaacatgtcaatgcgaattatccagtggcgggtcctgccgccattgcccatcatcaccaccagcagcagcatttgtcaccgtctcctgttgcgaatgtaggtgcgggatatggtggggcagtgaacaagggcttattcagagggagagagtattacgaggaggaatatgatgacgacgatgatgatggtggttcagtaggtaagaagatgaggaggggtgaaggtcctgagggtggcggctatgggtatggttcgtgtggttccagtgggaaggcttcgatttctgggcaattagatagaaagatagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39240" stop="37866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38940" g_stop="38181" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E706776" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38940" e_stop="38181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGGGGTGAAGGTCCTGAGGGTGGCGGCTATGGGTATGGTTCGTGTGGTTCCAGTGGGAAGGCTTCGATTTCTGGGCAATTAG</genome_strand>
        <mrna_strand>GTGAATTCCCTTTTC-AAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGGGGTGAAGGTCCTGAGGGTGGCGGCTATGGGTATGGTTCGTGTGGTTCCAGTGGGAAGGCTTCGATTTCTGGGCAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730370" ref_strand="+" ref_description="SGN-E730370 [LA23DF09]">
      <seq>ctgatagtccgttgagatgggaagcagcacccccagcgatgtagaagcgggattcgcgaagctacaaggtgaagatttcgagtattacatgcaaacttactccataatccttggccggaattccaaaaaatcaacggtagatgtcgacttatcatctctcggtggcggaatgaacatctcccgccaccatgctcgcatcttctacgacttccaacgacgtcgttttgccctcgaagtactgggcaaaaacgggtgttcagttgaaggtgttcttcaccttcccggtaccccacccatcaagctagattctcaagaccttcttcagatcggagataaagagttctatttcctccttccaattcgtagcatccttggtgggtccaggggacaacatgtcaatgcgaattatccagtggcgggtcctgccgccattgcccatcatcaccaccagcagcagcatttgtcaccgtctcctgttgcgaatgtaggtgcgggatatggtggggcagtgaacaagggcttattcagagggagagagtattacgaggaggaatatgatgacgacgatgatgatggtggttcagtaggtaagaagatgaggaggggtgaaggtcctgagggtggcggctatgggtatggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39163" stop="37922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38863" g_stop="38222" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E730370" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38863" e_stop="38222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGGGGTGAAGGTCCTGAGGGTGGCGGCTATGGGTATGGTTC</genome_strand>
        <mrna_strand>CTGATAGTCCGTTGAGATGGGAAGCAGCACCCCCAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGGGGTGAAGGTCCTGAGGGTGGCGGCTATGGGTATGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723368" ref_strand="+" ref_description="SGN-E723368 [FC20BB06]">
      <seq>gctttttagaatagcataaaatccctactgacagcctctacttcatcgagactcaattgtgaattcccttttcaaagcactctttttctcgtcggagattcttcgccggagaaaggaaactcggttattcatcacctgatagtccgttgagatgggaagcagcagcggtagcgatgtagaagcgggattcgcgaagctacaaggtgaagatttcgagtattacatgcaaacttactccataatccttggccggaattccaaaaaatcaacggtagatgtcgacttatcatctctcggtggcggaatgaacatctcccgccaccatgctcgcatcttctacgacttccaacgacgtcgttttgccctcgaagtactgggcaaaaacgggtgttcagttgaaggtgttcttcaccttcccggtaccccacccatcaagctagattctcaagaccttcttcagatcggagataaagagttctatttcctccttccaattcgtagcatccttggtgggtccaggggacaacatgtcaatgcgaattatccagtggcgggtcctgccgccattgcccatcatcaccaccagcagcagcatttgtcaccgtctcctgttgcgaatgtaggtgcgggatatggtggggcagtgaacaagggcttattcagagggagagagtattacgaggaggaatatgatgacgacgattatgatggtggttcagtaggtaagaagatgaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39298" stop="37960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38998" g_stop="38260" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E723368" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38998" e_stop="38260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTTAGAATAGCATAAAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGG</genome_strand>
        <mrna_strand>GCTTTTTAGAATAGCATAAAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATTATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368532" ref_strand="+" ref_description="SGN-E368532 [TUS-23-L18]">
      <seq>aaatccctactgacagcctctacttcatcgagactcaattgtgaattcccttttcaaagcactctttttctcgtcggagattcttcgccggagaaaggaaactcggttattcatcacctgatagtccgttgagatgggaagcagcagcggtagcgatgtagaagcgggattcgcgaagctacaaggtgaagatttcgagtattacatgcaaacttactccataatccttggccggaattccaaaaaatcaacggtagatgtcgacttatcatctctcggtggcggaatgaacatctcccgccaccatgctcgcatcttctacgacttccaacgacgtcgttttgccctcgaagtactgggcaaaaacgggtgttcagttgaaggtgttcttcaccttcccggtaccccacccatcaagctagattctcaagaccttcttcagatcggagataaagagttctatttcctccttccaattcgtagcatccttggtgggtccaggggacaacatgtcaatgcgaattatccagtggcgggtcctgccgccattgcccatcatcaccaccagcagcagcatttgtcaccgtctcctgttgcgaatgtaggtgcgggatatggtggggcagtgaacaagggcttattcagagggagagagtattacgaggaggaatatgatgacgacgatgatgatggtggttcagtagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39280" stop="37976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38980" g_stop="38276" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E368532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38980" e_stop="38276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGG</genome_strand>
        <mrna_strand>AAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246185" ref_strand="+" ref_description="SGN-E246185 [cLEF-40-N23]">
      <seq>aaaaccctactgacagcgtctacttcatcgagactcaattgtgaattcccttttcaaagcactctttttctcgtcggagattcttcgccggagaaaggaaactcggttattcatcacctgatagtccgttgagatgggaagcagcagcggtagcgatgtagaagcgggattcgcgaagctacaaggtgaagatttcgagtattacatgcaaacttactccataatccttggccggaattccaaaaaatcaacggtagatgtcgacttatcatctctcggtggcggaatgaacatctcccgccaccatgctcgcatcttctacgacttccaacgacgtcgttttgccctcgaagtactgggcaaaaacgggtgttcagttgaaggtgttcttcaccttcccggtaccccacccatcaagctagattctcaagaccttcttcagatcggagataaagagttctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39281" stop="38216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38980" g_stop="38516" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E246185" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38980" e_stop="38516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTT</genome_strand>
        <mrna_strand>AAAACCCTACTGACAGCGTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722582" ref_strand="+" ref_description="SGN-E722582 [FC17CG11]">
      <seq>aatcggccgaattggctgctgaagcttgacatttaaagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40211" stop="43014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40502" g_stop="40600" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="157" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="252" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42714" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="523" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="582"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E722582" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40502" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAAGGGATATTGCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGGCTGCTGAAGCTTGACATTTAAAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725353" ref_strand="+" ref_description="SGN-E725353 [FC26DD06]">
      <seq>gggcgattggcggccaatcggccgaattggctgctgaagcttgaaagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40211" stop="66347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40517" g_stop="40600" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="113" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="172" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="267" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="479" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42656" i_stop="43475" i_length="820">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43476" g_stop="43511" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="515" r_length="36" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E725353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40517" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42655"/>
          <exon e_start="43476" e_stop="43511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTAGTGCAGTGCGTTCCATTTACAGTTTAGCATTTCACTCGTATAACTACTAGACAGCCAAAGAAGGCAAGGATGAAGAACATGGTAGTTTTCATTGCCAAAGTAATCTCTGGTTTTCATTGTTTCAGCCATCATTGCCTTCTTCTGTTACCACGTTCTTTTTCTCGTTTTTTTGCGCATCCAGTTATATTCAAATGGCGTATCTCTATTATTGATGTCGTAGACTCAATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATGTATTGTTTTGTGATATAATACAAAGTGCGAAAACAAAAATAGTAAAGAGAAAAAATTGATTGAAGCCATGCATGTGAGAGAATGTGATTTTAGGCAACAATCGGTGTGGGAATTGAGCTGTTGGAATCAAACAATTTAATGTATCATTGATAGATAGGAGTAGGACATGTGATTTATTAATGGTTAGTCACCATCATACACCGAAAAGTTTGGTCATTATATATACCCAAAATGATGAAAGGGAATTAGAGAACAATCTCATTATTTGTGGATGATATGGTAAAATATACCTCTACTTAAAGATTCTCTGTAAGAATTATATTAGATCAGTAAAAGTGAAAAAGTACTTACTTTCTATTTCGTCATTAATAAGAAATGTTACTTGAAGTACTAAATATTGACTAATTAGCACAAACAAGGGTATAATAAAAAATGTGACCAAAAA</genome_strand>
        <mrna_strand>GCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733963" ref_strand="+" ref_description="SGN-E733963 [LB11BF10]">
      <seq>cttgaaagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40227" stop="42955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40527" g_stop="40600" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="133" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="228" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42654" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="439" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="451"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E733963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40527" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGA</genome_strand>
        <mrna_strand>CTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344201" ref_strand="+" ref_description="SGN-E344201 [cTOF-16-L23]">
      <seq>ttgaaagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgttacacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgacgtagaatgcttatgactcatgttgatctcattgagaagctactcaactacaacacactggataaatctgagggaagttaaagcaattggctgaactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40228" stop="42789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40528" g_stop="40600" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="132" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="273" r_length="46" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E344201" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40528" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATG</genome_strand>
        <mrna_strand>TTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTACACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGACGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTACTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGATAAATCTGAGGGAAGTTAAAGCAATTGGCTGAACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200124" ref_strand="+" ref_description="SGN-E200124 [cLEB-7-L5]">
      <seq>gcacgagcagacttagaactagggtttcagcattatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaatcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagttaacagtgtgatactgcaagctactcttgatgttttgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="42949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40530" g_stop="40600" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42649" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="430" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E200124" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40530" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGT</genome_strand>
        <mrna_strand>GCACGA-GCAGACTTAGAACTAGGGTTTCAGCATTATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAATCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTTAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295489" ref_strand="+" ref_description="SGN-E295489 [cLET-23-I2]">
      <seq>aaagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctgttttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40231" stop="43025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40531" g_stop="40600" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42725" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="506" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E295489" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40531" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTT</genome_strand>
        <mrna_strand>AAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGTTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296677" ref_strand="+" ref_description="SGN-E296677 [cLET-39-O9]">
      <seq>aaagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40231" stop="43014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40531" g_stop="40600" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42722" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="503" r_length="279" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E296677" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40531" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACC</genome_strand>
        <mrna_strand>AAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244081" ref_strand="+" ref_description="SGN-E244081 [cLEE-1-P12]">
      <seq>aagttgcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40232" stop="43009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40532" g_stop="40600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="128" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="223" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42709" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="489" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E244081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40532" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACT</genome_strand>
        <mrna_strand>AAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553269" ref_strand="+" ref_description="SGN-E553269 [cTSB-3-N17]">
      <seq>gcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccgggggggggggggggccccccttcccccccaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="66360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42733" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="508" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42734" i_stop="47309" i_length="4576">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47310" g_stop="47398" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="597" r_length="89" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E553269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42733"/>
          <exon e_start="47310" e_stop="47398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTAGTGCAGTGCGTTCCATTTACAGTTTAGCATTTCACTCGTATAACTACTAGACAGCCAAAGAAGGCAAGGATGAAGAACATGGTAGTTTTCATTGCCAAAGTAATCTCTGGTTTTCATTGTTTCAGCCATCATTGCCTTCTTCTGTTACCACGTTCTTTTTCTCGTTTTTTTGCGCATCCAGTTATATTCAAATGGCGTATCTCTATTATTGATGTCGTAGACTCAATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATGTATTGTTTTGTGATATAATACAAAGTGCGAAAACAAAAATAGTAAAGAGAAAAAATTGATTGAAGCCATGCATGTGAGAGAATGTGATTTTAGGCAACAATCGGTGTGGGAATTGAGCTGTTGGAATCAAACAATTTAATGTATCATTGATAGATAGGAGTAGGACATGTGATTTATTAATGGTTAGTCACCATCATACACCGAAAAGTTTGGTCATTATATATACCCAAAATGATGAAAGGGAATTAGAGAACAATCTCATTATTTGTGGATGATATGGTAAAATATACCTCTACTTAAAGATTCTCTGTAAGAATTATATTAGATCAGTAAAAGTGAAAAAGTACTTACTTTCTATTTCGTCATTAATAAGAAATGTTACTTGAAGTACTAAATATTGACTAATTAGCACAAACAAGGGTATAATAAAAAATGTGACCAAAAAGAGGAAGAAACAAACGTGAACAACGTTAATGCACCACCATTTTAATCTACAAAAAGGGGAGAAAAATAACATTGTTATGTTACCATTACTTGTGTTTCACTTGTTGGTTAAACTAATTTAATCTTTATTATGGTACTCCTAATAATGTTGAGCACAAAAATAATTAAAAATATATAAATTACACTAACCATGTCTGCAGGTCTGCACTCGGCAGTTTCCTGTCTCCTGCTCATCCCTGTGTTTTCTTCTCTCTCTGACTGGAGATTTCATATATTTACTATATTTCTGATTTGAAAAATCCCCATTTTTAAGCATATTTTGAGTTACTTGTCCCCCATTTCTCTGCAATACGTTATCATATTCAATGATAGTTACCACACCCCTTGTAGACTGGTCTAAAGCTACCTGGCAGATGTAACAAACTGGCATTTTGAGCTAAAAATGTATTTCTGGATCTAAAGTTACAATCTTTCTTGATTTTAAAGACACCCAATTTGAATAAAAGCTATAGAAATGGTGGGTTTGGTTGATTCTTGGTGTTTCTGTTATGGGGGTGGCAAGTCTGAGAAAATAAAAGCTACCATTTTTACAAGCAAAGGTTCTGCTATGGCACATATAGCTTCGACTGGCACTGGTTTCTTGATCCACCGGAATTTGCTGCTTACTACCCATGTAATACTTCCTTCTGTGGCTGCAGCTGAAGCTGCTGAGATCCGTCTTCAAAACGGTGTTGTTGCTTGCCTTTTTCCACACAGGTTACTTTTTCTTCTTATTGACTTTTATCTTTGTAATGTATTCATTTTTTGTTTTATAGAGTGGAAATTGATTCATATGGTTGACTACAACTAATTTGGGATTGGATTGTATTTGTTGCTGCTGTTTTATTGTAGTGTCTCTATGTTCAGATTCCAAAGAATGAAGAAACTTTCCTCTATTATGCTAGTTGATTTCTGATATGGTCGCTCTCGAATAATAATTATTCTATCAAAAAGTCTTCTGCTGATGATGAGAATTGGAGTCTATGAAAAAAGTGAAGTGTAACTACTATTAGCTGAGATGCTTGTCTTAGTCTATTGAATACCTGACTGACTTAGGATTTCACTAGTTCATTGGACTATTTTTGGTGAAATGTTTGCTCTTTGTAAGTATGCATCGAAGCATTGGCCTTCTATCAATAACATTGTATAGGAATCTGTCAAAATCATGTTCTCCGTCGAAAGACCTTTTCTTTATGGACCATTGACACCATCTCAAGATCCAATATTTGTAGTGTAGTTTTTAGAAGCTAAACATAATATTTACATGGCTACAGGAAAGGGTAGTTAGTCAAAACAGTTCTTCCTCAAACTGTCATTTCCCATGCACCTTCCTGCTCTACCAGACTACCGCCATCACTGTGTGTTGTGACAATTATTGAATAAATTGGAGTAGTCCTGCCAAAGAAGCTTGAAAGGTTTATGGTAGGTTTCGTCTGGAATATTCTTGTTAATGCAATCTATGATGTCACTCACAAGATTGATTTTAGTGAAGTGGATGGTGGTGTTGGGACAATCCTCAAACTAACCTTTCCACAAGCACTCTGTTGTTCACCTCTTACATGGAAAATGATTGTTGATGGTACAAAGCTCATCGAACTAGGTGGGCTTGTTGATCTTGGATCAGTCTGCATCAGATGCTGCTTGAAGCCATACAAAAGGATAGAGCTGCATGCATCACTATATAGTTTGATTGCCTAGTCAAGTGAGTATGAGTGCTTCTGAAAATTGTTATGCTTTTCCTTTATTCCCAGTTCCCATTAGTCACAAATTTTGCAGTAAATGTATATGTTAGAAAGGTATTTAAGAATTCAATCATAAGACTAGGGCCAGAGCTGACAGAATGGCTAAAATAGGGCGGAATATAGGGGAATCAGTAGTTGACCCTTAAGTAGTTTGAGTTGAGGTGTAGTTGATTGATAATCAATCACATAGCAATGGTTCAGATTGGTGTCATTAATAGTTTATCAAGTATTTTAGCAATGTGAGCATCATTAATGTGCATGAATTTTGCACTTGACCATCCGAAACATAAGTAGAAATATGTAGCTCTGGTCTATCAATTTGCTACAAGGATAAGATTATCACATTTGCCTGATGATGATATAGCAAGAGAGCAGGAGAACCTCGGACCAGATGCAACGAGGATTAGATCTTCTAAGCCCCCACTACAAGTGTGATGTTTTGCAGAAGATGAGTCGGGTCTTTGGGCATTCAATCCGTGTAAGAACTTGAATTTTGGGGCAATAAAAAAAGTTCATCTCTAGTTGCTGATGGCATTTGTGGCTTTAGATAGTGCATAATAAATTAAATCGCATGTATGCATGCATGTTGATGTATATACAAGTCATTTTCTTCTTGTGTTGATTCTCAGCAGCTCAAGGTGAATTGACTTCAATTATAATCAGGTTTGAATTTCCTTGACAGGCTACATAAAGGTTGCCAATAAATACTTGTAGGTTATAAAAAATGCAACATTGATCCGTAAAATGTCATTTAGCTAACACATTACTGATAATGAGGAACAAAAATAAAACTTCCCGTGTAGTCATGTTGGCATGCCAAGTATGAATGCTTTATCACTTACATCAGATAAACTTTTGGATTATGAAGCTGAAGGTTCGATGTCAGCTTGTGTTGTTATATGTTGTGCGCTTATGGAGGTTAACTGTACTTAGTACATTGCAATCGTGGCTAGAGTAATGGGAGTCTATATCTAAACGGATGTAGGATGGATGCGGAGGAAAATTAGGTAGGAGAATAAGAAGTATTGTTTAACTGTTGTTACCTGGTTCACCTTATTAAAGTACGATCTCCACATTTGTAAGATTGAATGGTTAACTTTATTTTGCTTTCTGACTAGTGAATGTTATGCATTGTCTACCTGGTCAAGCAAGCTTTTTTCCCTTTTTCAGGCCATCTCATTTTTCTGTTTATCACTTACTTCTCATTACAGGTTTTTTATTACCAGCTCCATACTAGATCTGACTATAGTGGGTCTTGATGTCATGGATGGAGACACAAATGCACATGTTCAGCTAACTCACTACCTGAAAACTTGTTCTAAACCTAATCTTGAGCTGGGTAATGCCGTTTACCTGTTAGGTTATAGCGAGAAAAAGGAGTTGACAGTTGGCGAAGGAAAAGTGGTAATAGCCACTGACAACCTTATAAAGCTGTCAACTGATGGAATAACTTGGAGGCCGGGTTCTGCTGGTTTTGATGTTCATGGCAATCTAGCCTTCATGGTATGTGATCCAATGAAGCTAGCAACATCTCCTAACTCAAAATCCTCATCAACTTCGCCATCTCCATTATCATCATGGAAAGACAGTCCCATGCAATTTGGTATACCCATCCCTATCATATGCGACTGGTTGAACCAACACTGGGAAGGAAGCCTCGATGACCTCAACAAACCAAAGTTGCCACTGATTCGGCTGATGTCTACTGGTCAAAGAAGTGAGCATTCTTGTGCATCCTTCACAATGCGGCGTGTTTTTAAGTCAACTGAAGCTGAAAATGATGCCACACCATCATCTTCGAACGGATTGCCCCAACCTAGAGAAGAACCTGGACCAAGTTGTTCTGCTGTTGCCACTAATTTGGAAGAGGAAGCAGTAATTACTCATGTCCAGGGAATTCCAACTCCTGAAATTTTTGAGTCGCGGAGATTAACTTCAACACCAGTTGGGAAGAACGAGAGTACACAAATCCAGCTTTTGGATATTAACTTTCCACCAAGGATTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGGGGGGGGGGGGGGGCCCCCCTTCCCCCCCAAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552185" ref_strand="+" ref_description="SGN-E552185 [cTSB-3-B8]">
      <seq>gcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanccgggggggggggccgggcccccattccccccaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="66360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42733" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="508" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42734" i_stop="47308" i_length="4575">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47309" g_stop="47398" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="598" r_length="90" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E552185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42733"/>
          <exon e_start="47309" e_stop="47398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTAGTGCAGTGCGTTCCATTTACAGTTTAGCATTTCACTCGTATAACTACTAGACAGCCAAAGAAGGCAAGGATGAAGAACATGGTAGTTTTCATTGCCAAAGTAATCTCTGGTTTTCATTGTTTCAGCCATCATTGCCTTCTTCTGTTACCACGTTCTTTTTCTCGTTTTTTTGCGCATCCAGTTATATTCAAATGGCGTATCTCTATTATTGATGTCGTAGACTCAATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATCTAGTCATAGAGAAGTGAATTGGGAGTACATTTACAGTCCATATGTATTGTTTTGTGATATAATACAAAGTGCGAAAACAAAAATAGTAAAGAGAAAAAATTGATTGAAGCCATGCATGTGAGAGAATGTGATTTTAGGCAACAATCGGTGTGGGAATTGAGCTGTTGGAATCAAACAATTTAATGTATCATTGATAGATAGGAGTAGGACATGTGATTTATTAATGGTTAGTCACCATCATACACCGAAAAGTTTGGTCATTATATATACCCAAAATGATGAAAGGGAATTAGAGAACAATCTCATTATTTGTGGATGATATGGTAAAATATACCTCTACTTAAAGATTCTCTGTAAGAATTATATTAGATCAGTAAAAGTGAAAAAGTACTTACTTTCTATTTCGTCATTAATAAGAAATGTTACTTGAAGTACTAAATATTGACTAATTAGCACAAACAAGGGTATAATAAAAAATGTGACCAAAAAGAGGAAGAAACAAACGTGAACAACGTTAATGCACCACCATTTTAATCTACAAAAAGGGGAGAAAAATAACATTGTTATGTTACCATTACTTGTGTTTCACTTGTTGGTTAAACTAATTTAATCTTTATTATGGTACTCCTAATAATGTTGAGCACAAAAATAATTAAAAATATATAAATTACACTAACCATGTCTGCAGGTCTGCACTCGGCAGTTTCCTGTCTCCTGCTCATCCCTGTGTTTTCTTCTCTCTCTGACTGGAGATTTCATATATTTACTATATTTCTGATTTGAAAAATCCCCATTTTTAAGCATATTTTGAGTTACTTGTCCCCCATTTCTCTGCAATACGTTATCATATTCAATGATAGTTACCACACCCCTTGTAGACTGGTCTAAAGCTACCTGGCAGATGTAACAAACTGGCATTTTGAGCTAAAAATGTATTTCTGGATCTAAAGTTACAATCTTTCTTGATTTTAAAGACACCCAATTTGAATAAAAGCTATAGAAATGGTGGGTTTGGTTGATTCTTGGTGTTTCTGTTATGGGGGTGGCAAGTCTGAGAAAATAAAAGCTACCATTTTTACAAGCAAAGGTTCTGCTATGGCACATATAGCTTCGACTGGCACTGGTTTCTTGATCCACCGGAATTTGCTGCTTACTACCCATGTAATACTTCCTTCTGTGGCTGCAGCTGAAGCTGCTGAGATCCGTCTTCAAAACGGTGTTGTTGCTTGCCTTTTTCCACACAGGTTACTTTTTCTTCTTATTGACTTTTATCTTTGTAATGTATTCATTTTTTGTTTTATAGAGTGGAAATTGATTCATATGGTTGACTACAACTAATTTGGGATTGGATTGTATTTGTTGCTGCTGTTTTATTGTAGTGTCTCTATGTTCAGATTCCAAAGAATGAAGAAACTTTCCTCTATTATGCTAGTTGATTTCTGATATGGTCGCTCTCGAATAATAATTATTCTATCAAAAAGTCTTCTGCTGATGATGAGAATTGGAGTCTATGAAAAAAGTGAAGTGTAACTACTATTAGCTGAGATGCTTGTCTTAGTCTATTGAATACCTGACTGACTTAGGATTTCACTAGTTCATTGGACTATTTTTGGTGAAATGTTTGCTCTTTGTAAGTATGCATCGAAGCATTGGCCTTCTATCAATAACATTGTATAGGAATCTGTCAAAATCATGTTCTCCGTCGAAAGACCTTTTCTTTATGGACCATTGACACCATCTCAAGATCCAATATTTGTAGTGTAGTTTTTAGAAGCTAAACATAATATTTACATGGCTACAGGAAAGGGTAGTTAGTCAAAACAGTTCTTCCTCAAACTGTCATTTCCCATGCACCTTCCTGCTCTACCAGACTACCGCCATCACTGTGTGTTGTGACAATTATTGAATAAATTGGAGTAGTCCTGCCAAAGAAGCTTGAAAGGTTTATGGTAGGTTTCGTCTGGAATATTCTTGTTAATGCAATCTATGATGTCACTCACAAGATTGATTTTAGTGAAGTGGATGGTGGTGTTGGGACAATCCTCAAACTAACCTTTCCACAAGCACTCTGTTGTTCACCTCTTACATGGAAAATGATTGTTGATGGTACAAAGCTCATCGAACTAGGTGGGCTTGTTGATCTTGGATCAGTCTGCATCAGATGCTGCTTGAAGCCATACAAAAGGATAGAGCTGCATGCATCACTATATAGTTTGATTGCCTAGTCAAGTGAGTATGAGTGCTTCTGAAAATTGTTATGCTTTTCCTTTATTCCCAGTTCCCATTAGTCACAAATTTTGCAGTAAATGTATATGTTAGAAAGGTATTTAAGAATTCAATCATAAGACTAGGGCCAGAGCTGACAGAATGGCTAAAATAGGGCGGAATATAGGGGAATCAGTAGTTGACCCTTAAGTAGTTTGAGTTGAGGTGTAGTTGATTGATAATCAATCACATAGCAATGGTTCAGATTGGTGTCATTAATAGTTTATCAAGTATTTTAGCAATGTGAGCATCATTAATGTGCATGAATTTTGCACTTGACCATCCGAAACATAAGTAGAAATATGTAGCTCTGGTCTATCAATTTGCTACAAGGATAAGATTATCACATTTGCCTGATGATGATATAGCAAGAGAGCAGGAGAACCTCGGACCAGATGCAACGAGGATTAGATCTTCTAAGCCCCCACTACAAGTGTGATGTTTTGCAGAAGATGAGTCGGGTCTTTGGGCATTCAATCCGTGTAAGAACTTGAATTTTGGGGCAATAAAAAAAGTTCATCTCTAGTTGCTGATGGCATTTGTGGCTTTAGATAGTGCATAATAAATTAAATCGCATGTATGCATGCATGTTGATGTATATACAAGTCATTTTCTTCTTGTGTTGATTCTCAGCAGCTCAAGGTGAATTGACTTCAATTATAATCAGGTTTGAATTTCCTTGACAGGCTACATAAAGGTTGCCAATAAATACTTGTAGGTTATAAAAAATGCAACATTGATCCGTAAAATGTCATTTAGCTAACACATTACTGATAATGAGGAACAAAAATAAAACTTCCCGTGTAGTCATGTTGGCATGCCAAGTATGAATGCTTTATCACTTACATCAGATAAACTTTTGGATTATGAAGCTGAAGGTTCGATGTCAGCTTGTGTTGTTATATGTTGTGCGCTTATGGAGGTTAACTGTACTTAGTACATTGCAATCGTGGCTAGAGTAATGGGAGTCTATATCTAAACGGATGTAGGATGGATGCGGAGGAAAATTAGGTAGGAGAATAAGAAGTATTGTTTAACTGTTGTTACCTGGTTCACCTTATTAAAGTACGATCTCCACATTTGTAAGATTGAATGGTTAACTTTATTTTGCTTTCTGACTAGTGAATGTTATGCATTGTCTACCTGGTCAAGCAAGCTTTTTTCCCTTTTTCAGGCCATCTCATTTTTCTGTTTATCACTTACTTCTCATTACAGGTTTTTTATTACCAGCTCCATACTAGATCTGACTATAGTGGGTCTTGATGTCATGGATGGAGACACAAATGCACATGTTCAGCTAACTCACTACCTGAAAACTTGTTCTAAACCTAATCTTGAGCTGGGTAATGCCGTTTACCTGTTAGGTTATAGCGAGAAAAAGGAGTTGACAGTTGGCGAAGGAAAAGTGGTAATAGCCACTGACAACCTTATAAAGCTGTCAACTGATGGAATAACTTGGAGGCCGGGTTCTGCTGGTTTTGATGTTCATGGCAATCTAGCCTTCATGGTATGTGATCCAATGAAGCTAGCAACATCTCCTAACTCAAAATCCTCATCAACTTCGCCATCTCCATTATCATCATGGAAAGACAGTCCCATGCAATTTGGTATACCCATCCCTATCATATGCGACTGGTTGAACCAACACTGGGAAGGAAGCCTCGATGACCTCAACAAACCAAAGTTGCCACTGATTCGGCTGATGTCTACTGGTCAAAGAAGTGAGCATTCTTGTGCATCCTTCACAATGCGGCGTGTTTTTAAGTCAACTGAAGCTGAAAATGATGCCACACCATCATCTTCGAACGGATTGCCCCAACCTAGAGAAGAACCTGGACCAAGTTGTTCTGCTGTTGCCACTAATTTGGAAGAGGAAGCAGTAATTACTCATGTCCAGGGAATTCCAACTCCTGAAATTTTTGAGTCGCGGAGATTAACTTCAACACCAGTTGGGAAGAACGAGAGTACACAAATCCAGCTTTTGGATATTAACTTTCCACCAAGGATTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCGGGGGGGGGGGCCGGGCCCCCATTCCCCCCAAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287965" ref_strand="+" ref_description="SGN-E287965 [cLES-7-C2]">
      <seq>gcatacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgcctaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaactctgtttgacattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="43050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42750" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="525" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E287965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTA</genome_strand>
        <mrna_strand>GCATACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCTAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTGACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552028" ref_strand="+" ref_description="SGN-E552028 [cTSB-2-J3]">
      <seq>gcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42733" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="508" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="552"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E552028" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA</genome_strand>
        <mrna_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283393" ref_strand="+" ref_description="SGN-E283393 [cLER-12-I4]">
      <seq>gcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgnaaaaaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="42955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42654" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="429" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E283393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGA</genome_strand>
        <mrna_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345546" ref_strand="+" ref_description="SGN-E345546 [cTOF-18-J15]">
      <seq>gcagacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40237" stop="42955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40537" g_stop="40600" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42654" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="429" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="459"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E345546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40537" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGA</genome_strand>
        <mrna_strand>GCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335154" ref_strand="+" ref_description="SGN-E335154 [cTOE-1-O22]">
      <seq>gaggcttagaactagggtttcagcaagaagatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaatacccttgatcttctccaagctgattacgccgaaggggatgcaccttgatgccacctgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40239" stop="42984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40538" g_stop="40600" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="123" r_length="60" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="221" r_length="98" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42689" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="467" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E335154" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40538" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATA-CCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCA-CTTGATG-CA-CTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTG</genome_strand>
        <mrna_strand>GAGGCTTAGAACTAGGGTTTCAGCAAGAAGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACCTTGATGCCACCTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351121" ref_strand="+" ref_description="SGN-E351121 [cTOS-6-H8]">
      <seq>agacttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40239" stop="42984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40539" g_stop="40600" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="121" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="216" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42688" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="461" r_length="245" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E351121" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40539" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCT</genome_strand>
        <mrna_strand>AGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349583" ref_strand="+" ref_description="SGN-E349583 [cTOS-1-N11]">
      <seq>ttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40243" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40543" g_stop="40600" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="117" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="212" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42740" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="509" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E349583" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40543" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTT</genome_strand>
        <mrna_strand>TTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354406" ref_strand="+" ref_description="SGN-E354406 [cTOS-17-K10]">
      <seq>ttagaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40243" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40543" g_stop="40600" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="117" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="212" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42740" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="509" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E354406" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40543" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTT</genome_strand>
        <mrna_strand>TTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320353" ref_strand="+" ref_description="SGN-E320353 [cTOB-22-K19]">
      <seq>agaactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40245" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40545" g_stop="40600" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="115" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="210" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42740" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="507" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E320353" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40545" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTT</genome_strand>
        <mrna_strand>AGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320127" ref_strand="+" ref_description="SGN-E320127 [cTOB-21-N19]">
      <seq>aactagggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccgaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctacaaactctgtttcacattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40247" stop="43050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40547" g_stop="40600" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="113" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="208" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42750" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="515" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="526"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E320127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40547" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTA</genome_strand>
        <mrna_strand>AACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCGAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280456" ref_strand="-" ref_description="SGN-E280456 [cLER-1-P2]">
      <seq>aaaaaaaaaaaaaaaaaaaaactcgaggggtttcagcaagatgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcgtgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40249" stop="42955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40553" g_stop="40600" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="76" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="135" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="230" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42660" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="447" r_length="217" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E280456" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280456" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40553" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCC</genome_strand>
        <mrna_strand>GGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCGTGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221306" ref_strand="+" ref_description="SGN-E221306 [cLEL-22-L5](-)">
      <seq>aagatgatcattccagtgcgctgtttcacctgcggnaaggttattggcaccaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40262" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40562" g_stop="40600" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="98" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="193" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42733" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="483" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="497"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E221306" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40562" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA</genome_strand>
        <mrna_strand>AAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGNAAG...........................................................................................................................................GTTATTGGCACCAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222525" ref_strand="+" ref_description="SGN-E222525 [cLEL-16-G7](-)">
      <seq>tgatcattccagtgcgctgtttcacctgcgggaaggttattggcaacaaatgggatgaataccttgatcttctccaagctgattacgccgaaggggatgcacttgatgcactgaatttggttagatattgctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaagaaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaccatatatgctggtgtagtggcactctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40266" stop="43007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40566" g_stop="40600" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40740" g_stop="40798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="94" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41178" g_stop="41272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="189" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42444" g_stop="42707" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="453" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="469"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E222525" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40566" e_stop="40600"/>
          <exon e_start="40740" e_stop="40798"/>
          <exon e_start="41178" e_stop="41272"/>
          <exon e_start="42444" e_stop="42707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAGGTAATTTTTGTTTTTAAGCTTTTTAATTCTCCATTGTTTCAGAAAAAAAAAAACTAATTTAGCTGATTTTTACTTAATTGTTTCGAGTGATTAATTATGTTGGAATTGATTTTGTTCTTAAATTGATTTGTATATTTAGGTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGGGTGAGAATCGTTATATACACTAACCCCCTTAAACCCTAAAAAAAAAACAGAATAAATGCTACATTTTTGTTGTGTCTGCCATTAGTGCCTTTTGAATTGGAATTCTATTATGGAACAATTAACTATGAAAGATGAAACTTTTTGACAATCCAGCTGAAAATTAGGCGGTGATTGCCTCTCATCCCTATTGAGTTGGTAATTTGACTATTTTTGGACGTTGTTTGTGAAAATATCGAGGTCGCAAATGTAGAATGCGAAGCTTAAGTAGGTGGAGTTAGAATTATCAATGCAGCAAGTGTTTGCTTCAGAAAGAATCTGGAAGTACCTGTGAAATTCTTTGAGTCAAGTATTTGAATGGATCTATTATGTTTTTGTGCAGGGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAA</genome_strand>
        <mrna_strand>TGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG...........................................................................................................................................GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGAAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACACCATATATGCTGGTGTAGTGGCACTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222448" ref_strand="+" ref_description="SGN-E222448 [cLEL-16-G7](-)">
      <seq>atgcacttgatgcactgaatttggttagataccgctgtcgtagaatgcttatgactcatgttgatctcagttgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtaaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggccctctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40880" stop="43007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41180" g_stop="41272" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42444" g_stop="42707" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="358" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="374"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E222448" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41180" e_stop="41272"/>
          <exon e_start="42444" e_stop="42707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCA-TTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAA</genome_strand>
        <mrna_strand>ATGCACTTGATGCACTGAATTTGGTTAGATACCGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCAGTTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTAAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCCCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221191" ref_strand="+" ref_description="SGN-E221191 [cLEL-22-L5](-)">
      <seq>gctgtcgtagaatgcttatgactcatgttgatctcattgagaagcttctcaactacaacacactggagaaatctgagggaagttgaagcaatttcctgaactaatgagctccaaatgtttatatctagaccatctacttcttagctgtaattctctttctagttgtaaggaggtgaagtaaattgttcccatatgaagggagtcttatgaatcgtgtaaccagtaaacagtgtgatactgcaagctactcttgatgttttgttggttctgaatctcctggtttcctatttaacaatatatatgctggtgtagtggcactctaaacttagaagttgaaccttttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40913" stop="43033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41213" g_stop="41272" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42444" g_stop="42733" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="350" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="364"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E221191" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41213" e_stop="41272"/>
          <exon e_start="42444" e_stop="42733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACAGTAACTTCCTCCTCTCTTCTTTGTCTATATAAATTATGAATAAGTATTTTTTTTGGATGAAATAGGTAAATGTTATGAGTAAGTATTATTAATGTAATATGCTTGAAAAACTTGTAGAAGCTTGCCAATCGAAGACTTTTGGTCCACACCTAGACTCTGGCTTCACAAGTCTTTTTCGTTTGACATTTGTGTTCAATGTTTGTACCTAGCCTATTTTGCATTTTGGCAGGGTGATATTTATTTTAGTTATATCCTTGTCAATCTTGTAAGAATAATCAGGGGGTTGCAATAGAATTGGTTAAGGATATCATACACTGTCATAGGGAAGGATTTCAAATAATTAAGCAATTATCACCCTGCTCTTTTGTCTTTTGCATCAAGGTGAAAGATTTCACTGATGACATAAATCTTCATGTGAACTAATTGTTTGGGTTTTCTTCTCTTAATAATGTATTTCGGAGATAGAGCCTCCTCTTAGAAAAACTAGTGTCCATCTGATGGATTGCCAGAGAACCTGTATCATACCGCTTAAATGTCTATTCGGAGTTCTCGTATTAGTGTAGCTCCACGGGAGAGGCACTACCTCGCCGCCTCCCTTCATCTTATCATTGAAAGCACCAAACTGATCACCATGACAGTGACCCTTGTGTTTCCACTAGATGTCAGTCAGTCTATCTACAGCAATATTAGCTCATACTTTCATATGAACATGTCCCCCTTGACTGGACCTTGGAAATTGTTCTACCCCTATTTTCTTAGAATCAGCTCACTCAAAGAGGTGAGTATGATGCCTACCTATAATCAAGCAATTATAGAAAGGATAATCTACATGGTTTAGCTGCCGAACTCATCTAAAGAATAATTAGAAAAACTTTCAAGTCATTCTGCGGAGAGGTTTGACATAGGGAAACCATACTAACGACTAGTTACTAGCATTTTTATCTTTAATGTTTCCACTTCGATCTATGACGAGCTTGATTTATGTTTTTAAGTACTACGAAGATCCTCTTCTCTAGGAACTTATGTTCATCTGAAACTAAATGTCGCTGCTAAAATATATTATTTCCATCTTCCATGGTGCTGTATTTGGTTATTTCATCTTAATATATATGCTGTTAAGAGAAGCTGGCTTGGATACTAACATGATTATCTTTTCCCTTTTCTTTGGCAGCACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA</genome_strand>
        <mrna_strand>GCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262901" ref_strand="+" ref_description="SGN-E262901 [cLEG-59-J15]">
      <seq>caatattaagctaacaaattatcgtccatagttcaatcaggatttttatttagagctatttatctttagatgtgctttgctgttggagaatcaagaatgtctcatatccttctgatatgtttctttcttttctctgatttatgtaaaaattagagctttctctactaatttcattttctttctgtccaaatctaattgttgtagttttgatagtcatatttttgagatattattgtccctgtcatcgtattttggagatattggtactgctgccgttatactttggggacgttgatgttcctgttctttcatgcatatatgttctaatttatggacattaatgtattaatgtttcaaaagaatgatggagaatatttgcataccagtttggggatatatttgtgcttttttcctaaaataaaagaactttttgctcctgttggttgctaaaaagggggcggaagtaaaattttagcttaagtctaaagtaatgtcaagctgattcgaggcaaatgcagcctaacattgaacatgtatttacctgtaatccgatagtacaaagcatcaatggtttaaattgtgtgtttgcctcagcctgagtccttatcttccttgagctttggtttccaaaatgttgttgatccctgcctgtttttggcctttaacttgagctaacgcgggaaacagagagatcgagatcgtgaaagggcacaagccaggggaaatcacaagtccaagacaccttaaaatgatggattaactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47157" stop="48621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47457" g_stop="47496" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47497" i_stop="47593" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47594" g_stop="48321" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="766" r_length="726" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E262901" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47457" e_stop="47496"/>
          <exon e_start="47594" e_stop="48321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTAAGCTAACAAATTATCGTCCATAGTTCAATCAGGTAAGTGCCCTTTTTCTTTATCTTTCAGTTTTTGGTTTTATTTGGGGTAGTAATTAATGACGGTGTATCTAAATTTCCTCTTTTGTTTTTGTTCCAGGATTTTTATTTAGAGCTATTTATCTTTAGATCTGTGCTTTGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTG</genome_strand>
        <mrna_strand>CAATATTAAGCTAACAAATTATCGTCCATAGTTCAATCAG.................................................................................................GATTTTTATTTAGAGCTATTTATCTTTAGAT--GTGCTTTGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAAACAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTTAAAATGATGGATTAACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260278" ref_strand="+" ref_description="SGN-E260278 [cLEG-53-H22]">
      <seq>caatattaagctaacaaattatcgtccatagttcaatcaggatttttatttagagctatttatctttagatctgtgctttgctgttggagaatcaagaatgtctcatatccttctgatatgtttctttcttttctctgatttatgtaaaaattagagctttctctactaatttcattttctttctgtccaaatctaattgttgtagttttgatagtcatatttttgagatattattgtccctgtcatcgtattttggagatattggtactgctgccgttatactttggggacgttgatgttcctgttctttcatgcatatatgttctaatttatggacattaatgtattaatgtttcaaaagaatgatggagaatatttgcataccagtttggggatatatttgtgcttttttcctaaaataaaagaactttttgctcctgttggttgctaaaaagggggcggaagtaaaattttagcttaagtctaaagtaatgtcaagctgatttcgaggcaatgcagcctaacattgaacatgtatttaccctgtatccgatagtacaaagcatcaatggtttaaattgtgtgtttgcctcagcctgagtccttatcttccttgagccttggttttccaaatgttgttgatccctgcctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47157" stop="48510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47457" g_stop="47496" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47497" i_stop="47593" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47594" g_stop="48210" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="657" r_length="617" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E260278" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47457" e_stop="47496"/>
          <exon e_start="47594" e_stop="48210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTAAGCTAACAAATTATCGTCCATAGTTCAATCAGGTAAGTGCCCTTTTTCTTTATCTTTCAGTTTTTGGTTTTATTTGGGGTAGTAATTAATGACGGTGTATCTAAATTTCCTCTTTTGTTTTTGTTCCAGGATTTTTATTTAGAGCTATTTATCTTTAGATCTGTGCTTTGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGA-TTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTA-CCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTT</genome_strand>
        <mrna_strand>CAATATTAAGCTAACAAATTATCGTCCATAGTTCAATCAG.................................................................................................GATTTTTATTTAGAGCTATTTATCTTTAGATCTGTGCTTTGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTTCGAGGC-AATGCAGCCTAACATTGAACATGTATTTACCCTGT-ATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCCTTGGTTTTCCAAATGTTGTTGATCCCTGCCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258434" ref_strand="+" ref_description="SGN-E258434 [cLEG-47-D1]">
      <seq>tgctgttggagaatcaagaatgtctcatatccttctgatatgtttctttcttttctctgatttatgtaaaaattagagctttctctactaatttcattttctttctgtccaaatctaattgttgtagttttgatagtcatatttttgagatattattgtccctgtcatcgtattttggagatattggtactgctgccgttatactttggggacgttgatgttcctgttctttcatgcatatatgttctaatttatggacattaatgtattaatgtttcaaaagaatgatggagaatatttgcataccagtttggggatatatttgtgcttttttcctaaaataaaagaactttttgctcctgttggttgctaaaaagggggcggaagtaaaattttagcttaagtctaaagtaatgtcaagctgattcgaggcaaatgcagcctaacattgaacatgtatttacctgtaatccgatagtacaaagcatcaatggtttaaattgtgtgtttgcctcagcctgagtccttatcttccttgagctttggtttccaaaatgctgttgatccctgcctgtttttggcctttaacttgagctaacgcgggaaccagagagatcgagatcgtgaaagggcacaagccaggggaaatcacaagtccaagacacctaaaaatgatggattaactcctgaacaacgaagagaaatggatgcaaaggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47333" stop="48643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47633" g_stop="48337" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48338" i_stop="48408" i_length="71">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48409" g_stop="48423" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="720" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E258434" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47633" e_stop="48337"/>
          <exon e_start="48409" e_stop="48423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTGAACAACGAAGAGAAAGGTTGAACCTTACTTGTTATATGCCAAAATTGCATAATTCATGTTGCTGACATACATACACATTGTCATCAGGGATGCAAAGGCACT</genome_strand>
        <mrna_strand>TGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGCTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTGAACAACGAAGAGAAAT.......................................................................GGATGCAAAGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249174" ref_strand="-" ref_description="SGN-E249174 [cLEF-50-K9]">
      <seq>ctaaaaagggggcggaagtaaaattttagcttaagtctaaagtaatgtcaagctgattcgaggcaaatgcagcctaacattgaacatgtatttacctgtaatccgatagtacaaagcatcaatggtttaaattgtgtgtttgcctcagcctgagtccttatcttccttgagctttggtttccaaaatgttgttgatccctgcctgtttttggcctttaacttgagctaacgcgggaaccagagagatcgagatcgtgaaagggcacaagccaggggaaatcacaagtccaagacacctaaaaatgatggattaactcctgaacaacgaagagaaagggatgcaaaggcacttcaagagaaggcgaaaaagaaagcagcacaggcggaagatggatggaatatcaacaaatcggaaagccataacatcaagaagaaatagattcatgacgagtttcatggaactttttatcctcagtaattctggcatgtattgtttggcttttgtacctttgatttgtgtcttcatctgcaatgaaatttactcactcttcacattgttggaaagaaatatatattgatcaaagaaatttgaattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47702" stop="48968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48002" g_stop="48337" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48338" i_stop="48408" i_length="71">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48409" g_stop="48668" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="596" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="606"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E249174" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249174" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48002" e_stop="48337"/>
          <exon e_start="48409" e_stop="48668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTGAACAACGAAGAGAAAGGTTGAACCTTACTTGTTATATGCCAAAATTGCATAATTCATGTTGCTGACATACATACACATTGTCATCAGGGATGCAAAGGCACTTCAAGAGAAGGCGAAAAAGAAAGCAGCACAGGCGGAAGATGGATGGAATATCAACAAATCGGAAAGCCATAACATCAAGAAGAAATAGATTCATGACGAGTTTCATGGAACTTTTTATCCTCAGTAATTCTGGCATGTATTGTTTGGCTTTTGTACCTTTGATTTGTGTCTTCATCTGCAATGAAATTTACTCACTCTTCACATTGTTGGAAAGAAATATATATTGATCAAAGAAATTTGAATTG</genome_strand>
        <mrna_strand>CTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTGAACAACGAAGAGAAAG.......................................................................GGATGCAAAGGCACTTCAAGAGAAGGCGAAAAAGAAAGCAGCACAGGCGGAAGATGGATGGAATATCAACAAATCGGAAAGCCATAACATCAAGAAGAAATAGATTCATGACGAGTTTCATGGAACTTTTTATCCTCAGTAATTCTGGCATGTATTGTTTGGCTTTTGTACCTTTGATTTGTGTCTTCATCTGCAATGAAATTTACTCACTCTTCACATTGTTGGAAAGAAATATATATTGATCAAAGAAATTTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333024" ref_strand="+" ref_description="SGN-E333024 [cTOD-19-E1]">
      <seq>tttgttggtaatgataggggctatagacatcccagtaggagcaatgttactccatcagggcagtcctctaagtttgaggaaagtcaaaatgcaaaagaattaggtaagtctactgcttttggcatccctaaaaaagcatacaagcgaagatacaggccccggccaaatcgtgacagtgctagatcaagttcatctgatatagctcgtggtggtcatgacacatctttgccttcacaacattttcccaaagatgtaaaaggacttgtttctgatttagataaggatcaaaactcgtcgttgaacattgcacagactcttagtccaaatggtggtatggctctccagactatgccgtctgataatcagctggacttagaagtagatggtgttaaagctgcagagtcaactactgactttaagaaagatgatatgctggatactgttcctgatgctagtgcttctagaagtttactcgataaccaacataatcagaaccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53509" stop="54608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53809" g_stop="54308" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E333024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53809" e_stop="54308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGGTAATGATAGGGGCTATAGACATCCCAGTAGGAGCAATGTTACTCCATCAGGGCAGTCCTCTAAGTTTGAGGAAAGTCAAAATGCAAAAGAATTAGGTAAGTCTACTGCTTTTGGCATCCCTAAAAAAGCATACAAGCGAAGATACAGGCCCCGGCCAAATCGTGACAGTGCTAGATCAAGTTCATCTGATATAGCTCGTGGTGGTCATGACACATCTTTGCCTTCACAACATTTTCCCAAAGATGTAAAAGGACTTGTTTCTGATTTAGATAAGGATCAAAACTCGTCGTTGAACATTGCACAGACTCTTAGTCCAAATGGTGGTATGGCTCTCCAGACTATGCCGTCTGATAATCAGCTGGACTTAGAAGTAGATGGTGTTAAAGCTGCAGAGTCAACTACTGACTTTAAGAAAGATGATATGCTGGATACTGTTCCTGATGCTAGTGCTTCTAGAGGTTTACTCGATAACCAACATAATCAGAACCCTCT</genome_strand>
        <mrna_strand>TTTGTTGGTAATGATAGGGGCTATAGACATCCCAGTAGGAGCAATGTTACTCCATCAGGGCAGTCCTCTAAGTTTGAGGAAAGTCAAAATGCAAAAGAATTAGGTAAGTCTACTGCTTTTGGCATCCCTAAAAAAGCATACAAGCGAAGATACAGGCCCCGGCCAAATCGTGACAGTGCTAGATCAAGTTCATCTGATATAGCTCGTGGTGGTCATGACACATCTTTGCCTTCACAACATTTTCCCAAAGATGTAAAAGGACTTGTTTCTGATTTAGATAAGGATCAAAACTCGTCGTTGAACATTGCACAGACTCTTAGTCCAAATGGTGGTATGGCTCTCCAGACTATGCCGTCTGATAATCAGCTGGACTTAGAAGTAGATGGTGTTAAAGCTGCAGAGTCAACTACTGACTTTAAGAAAGATGATATGCTGGATACTGTTCCTGATGCTAGTGCTTCTAGAAGTTTACTCGATAACCAACATAATCAGAACCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367217" ref_strand="+" ref_description="SGN-E367217 [cLPT-5-K9]">
      <seq>acatatgcagtagttgcaacttatgcaacaacgaaatgcccaattacagcgaaaggatcaaaatccctcccttggtggtcctataagcgctataaactctgaaggcggcatgatggggcaaccatctgctagtgttttggccatgaaaatgtacgaggaacaaatgaagcaccctcattccttggattcagagacatcttcgcctcttattgatcccaataggatggcacttctcaagtctgcatctaatcatcaacgccagttggtacaaggtaattcggggagcatgtctgcagcattgcagcaaatgcaaaggcgccctcagatggctgcggatattaaaacggaagtgaacttgagtggtactcagaaatctttgcccatggatccttcatcaatttatgggcaagctattctacagtcgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59121" stop="60318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59362" g_stop="59620" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59621" i_stop="59744" i_length="124">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59745" g_stop="59820" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="334" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59924" g_stop="60018" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="429" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E367217" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59362" e_stop="59620"/>
          <exon e_start="59745" e_stop="59820"/>
          <exon e_start="59924" e_stop="60018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCCTCCCTTGCGTGGTCCTATAAGCGCTATAAACTCGGAAGGCGGCATGATGGGGCAACCATCTGCTAGTGTTTTGGCCATGAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACGGTATGAGTGGTGCAAGATCTTTTGTAACGTCTCCTCCATTTGTTGCATTACTTTAGGTAGACTCTATTAATTTGTTTTATGCTATATCTGAACTTCTACCTGCATTTGTTCTCTGTTGATTCAGCCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCGGTAACTAGTTGACCTCTTATATCGGCAGAGATATCTACTTATTGTTGAGTTTATTTTGTCGTCTTGGACCAAGCTTAGCCCGATATTCTTGGAAAATGTGTAGGATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTC</genome_strand>
        <mrna_strand>ACATATGCAGTAGTTGCAACTTATGCAACAACGAAATGCCCAATTACAGCGAAAGGATCAAAATCCCTCCCTTG-GTGGTCCTATAAGCGCTATAAACTCTGAAGGCGGCATGATGGGGCAACCATCTGCTAGTGTTTTGGCCATGAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGATTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACG............................................................................................................................CCAGTTGGTACAAGGTAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAAGGCGCCCTCAGATGGCTGCG.......................................................................................................GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331675" ref_strand="+" ref_description="SGN-E331675 [cTOD-7-M16]">
      <seq>gaaaatgtacgaggaacaaatgaagcaccctcattccttggactcagagacatcttcgcctcttattgatcccaataggatggcacttctcaagtctgcatctaatcatcaacgccagttggtacaaggcaattcggggagcatgtctgcagcattgcagcaaatgcaagggcgccctcagatggctgcggatattaaaacggaagtgaacttgagtggtactcagaaatctttgcccatggatccttcatcaatttatgggcaagctattctacagtcgaagtcaggactcagcggtgcaggcttaaatcaaggtatgactggtttaccattgaagggctggccgttaactggaattgaccatttgaggccaagtgtgggtttgcaagtacagaagcccaatatacagaaccaaaatcaatatcttttggcatcacaacaacagcagcaggctcttgcacaggctcaagcacaaggtaacctgaattcccctagctatggatatggtggattaccaagaggtaacttcaatgcaaaagatggtcagccaccgagaaatgacggatccatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59207" stop="61752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59507" g_stop="59620" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59621" i_stop="59744" i_length="124">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59745" g_stop="59820" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="190" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59924" g_stop="60035" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="302" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61087" g_stop="61136" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="352" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61229" g_stop="61452" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="576" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E331675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59507" e_stop="59620"/>
          <exon e_start="59745" e_stop="59820"/>
          <exon e_start="59924" e_stop="60035"/>
          <exon e_start="61087" e_stop="61136"/>
          <exon e_start="61229" e_stop="61452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACGGTATGAGTGGTGCAAGATCTTTTGTAACGTCTCCTCCATTTGTTGCATTACTTTAGGTAGACTCTATTAATTTGTTTTATGCTATATCTGAACTTCTACCTGCATTTGTTCTCTGTTGATTCAGCCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCGGTAACTAGTTGACCTCTTATATCGGCAGAGATATCTACTTATTGTTGAGTTTATTTTGTCGTCTTGGACCAAGCTTAGCCCGATATTCTTGGAAAATGTGTAGGATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAGGTACTGTCGTCTTGGTTGCTCAGCACCTTTTGTCCACTACTCAACTAGTGATCTCTTGTCATAAAATATTTCCTTTTTACATGTAATCGCATGGAATCAGTTTGGCATATTATCTTATTTATCCTTGAAAGGAAGCATGGAGTTCTCTTAATGAACTCTTTCAATTCATATCTCTGCAACTCGGACATCCTTAGTGTGTTTTTTCCATATATTTTTCCCATATAGCATTCATTTGCCGTAATCTAAGCTCTTTGATTCTTCCATTTATTGGCTACCAGACAAATGTATATTCCTCTCCTATATGGTAACTTTCATGAATTAAATTGCTCTTTCTCTTTCCTGTACTGCAAGTTCTAGAAGATTAAAGCTTCCACTTTTAGAGGATTGGATAAGGACTTCAAAAATGATTATTTCCATCTTCAATCTGTTCCAAGTTCAACTATATACAAATAACATAACTAGTGCAATACCTGCCGCCTACATTTTTGCGTCATTGCATCCCTTTTTTGGCATAGCTGATTGTCCATGATATCCATGTTTGTTTTATGTAGATTTTTGGAGTCAATTCCTGATCGTGCTCCTTCAACTGGCATCATTCATATTTTCTTACTAATATTTCTTGTTTGTTACTGCTGAATTCTTTAGCATCCGTAGTGGACATATATCTAATAATCACTGTTAGGATGTTCCACAGCCATTGCTGTTATGATTTATTTATTACCTTTTTAATGTGACCTTTTGGTGAATTGTCTGGTATATCAAGCATGTGTGTTTAGCAGAAACAGTTGGTGTGAGTTTAAGTAGATTTTTGAGTGATGTGTTCTTTTCTGGGTATGTTCTTGTCGTTGTTATCTTTTTGTTGGTCTCTGTATAGTGGATTTTGATTTTGAGAAGTTCTGTGTTTCTCTTTTTTTCTTTGATTTTGTTTTTTTTTTTATTTTTGGGGGAGGGGGTATTAAGACGGGGTTGGTAGTTCTAACTCAATTTTGTTGATGATTATATTGGCGGCCACTGGGGTAATTTGTCCTTTCATTTTCTCCTGCTTCTTTAGGCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACTGTAAGTTACTAATTGCTTTCATTCATCTTAAAAGTTGAATTTCTACAATTTCGATGTTAATGTCTGGCTGCTTTACTCATTGATATTGACAGGGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTC</genome_strand>
        <mrna_strand>GAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACG............................................................................................................................CCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG.......................................................................................................GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT............................................................................................GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730193" ref_strand="+" ref_description="SGN-E730193 [LA23BD11]">
      <seq>cgctatacaccctcattccttggactcagagacatcttcgcctcttattgatcccaataggatggcacttctcaagtctgcatctaatcatcaacgccagttggtacaaggcaattcggggagcatgtctgcagcattgcagcaaatgcaagggcgccctcagatggctgcggatattaaaacggaagtgaacttgagtggtactcagaaatctttgcccatggatccttcatcaatttatgggcaagctattctacagtcgaagtcaggactcagcggtgcaggcttaaatcaaggtatgactggtttaccattgaagggctggccgttaactggaattgaccatttgaggccaagtgtgggtttgcaagtacagaagcccaatatacagaaccacaatcaatatcttttggcatcacaacaacagcagcaggctcttgcacaggctcaagcacaaggtaacctgaattcccctagctatggatatggtggattaccaagacgtaacttcaatgcaaaagatggtcagccaccgagaaatgacggatccatatgctctccagtacaatcaaattcaccaaagatgaaaatggcccaaattccacaatcctcctctcaacaacaggaccagttgcagcagcaacagcaacagcagcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59232" stop="63041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59525" g_stop="59620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59621" i_stop="59744" i_length="124">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59745" g_stop="59820" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="172" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59924" g_stop="60035" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="284" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61087" g_stop="61136" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="334" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61229" g_stop="61477" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="583" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61478" i_stop="62672" i_length="1195">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62673" g_stop="62741" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="652" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E730193" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59525" e_stop="59620"/>
          <exon e_start="59745" e_stop="59820"/>
          <exon e_start="59924" e_stop="60035"/>
          <exon e_start="61087" e_stop="61136"/>
          <exon e_start="61229" e_stop="61477"/>
          <exon e_start="62673" e_stop="62741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACGGTATGAGTGGTGCAAGATCTTTTGTAACGTCTCCTCCATTTGTTGCATTACTTTAGGTAGACTCTATTAATTTGTTTTATGCTATATCTGAACTTCTACCTGCATTTGTTCTCTGTTGATTCAGCCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCGGTAACTAGTTGACCTCTTATATCGGCAGAGATATCTACTTATTGTTGAGTTTATTTTGTCGTCTTGGACCAAGCTTAGCCCGATATTCTTGGAAAATGTGTAGGATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAGGTACTGTCGTCTTGGTTGCTCAGCACCTTTTGTCCACTACTCAACTAGTGATCTCTTGTCATAAAATATTTCCTTTTTACATGTAATCGCATGGAATCAGTTTGGCATATTATCTTATTTATCCTTGAAAGGAAGCATGGAGTTCTCTTAATGAACTCTTTCAATTCATATCTCTGCAACTCGGACATCCTTAGTGTGTTTTTTCCATATATTTTTCCCATATAGCATTCATTTGCCGTAATCTAAGCTCTTTGATTCTTCCATTTATTGGCTACCAGACAAATGTATATTCCTCTCCTATATGGTAACTTTCATGAATTAAATTGCTCTTTCTCTTTCCTGTACTGCAAGTTCTAGAAGATTAAAGCTTCCACTTTTAGAGGATTGGATAAGGACTTCAAAAATGATTATTTCCATCTTCAATCTGTTCCAAGTTCAACTATATACAAATAACATAACTAGTGCAATACCTGCCGCCTACATTTTTGCGTCATTGCATCCCTTTTTTGGCATAGCTGATTGTCCATGATATCCATGTTTGTTTTATGTAGATTTTTGGAGTCAATTCCTGATCGTGCTCCTTCAACTGGCATCATTCATATTTTCTTACTAATATTTCTTGTTTGTTACTGCTGAATTCTTTAGCATCCGTAGTGGACATATATCTAATAATCACTGTTAGGATGTTCCACAGCCATTGCTGTTATGATTTATTTATTACCTTTTTAATGTGACCTTTTGGTGAATTGTCTGGTATATCAAGCATGTGTGTTTAGCAGAAACAGTTGGTGTGAGTTTAAGTAGATTTTTGAGTGATGTGTTCTTTTCTGGGTATGTTCTTGTCGTTGTTATCTTTTTGTTGGTCTCTGTATAGTGGATTTTGATTTTGAGAAGTTCTGTGTTTCTCTTTTTTTCTTTGATTTTGTTTTTTTTTTTATTTTTGGGGGAGGGGGTATTAAGACGGGGTTGGTAGTTCTAACTCAATTTTGTTGATGATTATATTGGCGGCCACTGGGGTAATTTGTCCTTTCATTTTCTCCTGCTTCTTTAGGCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACTGTAAGTTACTAATTGCTTTCATTCATCTTAAAAGTTGAATTTCTACAATTTCGATGTTAATGTCTGGCTGCTTTACTCATTGATATTGACAGGGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAGGTTAGGTCTACTTACCTAGAATGAAGAAAAGTACCTGCATTGGCTAGTTATGTTTTGCATTGTCCAGTATGCAATCTTAAAGACTATTTGTCACACCGTGGCGCATGGATTGTCTTTCTCTTAGTTCAAAATTTTAATGCGTTGTTTAGTGCAAAGATCAATTTTAACTGTGTTTTCCTCAAGATGCTTGTGTTTTGTTCCTTTCTAGAGCTAAAAGGAGGAGACATGACGTTGAAGGCATCAAGGCAATGCATGCCAATTTTGAGGTCGCTGAAGGCAATTGACTAAAATAATTAGGAAATAGAGTAGAATAAACTGAATCGTGTTGAGAAGTAACCTAATCTGGACTAAAAATTTTAAGGGAGACCGAGAGAGATTCTTAAGTTTCCTTTTCTTCTTTACCCATCTAGAGGGTGATCAGTTCTTAAGAAGGCTGGAGCAGATTATGGGAGCGCCTGATGATATGTTAGTTTGTTAGTAATAATAAAGTAGTTAATTGAAGGGATAGTGTTTTACCTTGCTATCTCTTTCCTTGTCGAGGATTCTCATTTGGGATGTTTTCTTCACTTAGTGTGAAAACCACAGTAAGTTCTCTAGAGTAAGGTGGTTAAAGTTAACAGTCCTTAATTTCCTGGTGCGTTGGTATTTAACAAATGAGAGCTGGCCGTGCTTTACTGCCTCCAGATTCTTTAACTTTGAACTATTATGTAGTTCATCAAGCCTTCACTTTGACCTTGCCATTTTAGGATAAGCCTTTTCCATGTTAGGACGCAAGAACAAACATTGCAGACTAGTGGGAGTCTGTGATGAAGGGATTGTATGTAGAAATTTATCTTGATTCTTAGTCACTGAAGTGCCAGGATTATATATCAAGGCTGATGGCAAGTGAAACTAATTATCAGAACCTAGATCTCAACCAAAATGCAATGAGACCTTATCTTTTGGCTAAGGTATTAGCACTTGCTTTACTACTGGATTGTACATCTTTCAGTTTAATTGGCACCATTACAGCTGTCTTGAGCAGTTGACATGCCTTAGCTTCTTAAACTGTTCCTCACTGGCTTATTGTGTGTGATGATATGTATGGTTTTAAACAATTATGTGTCTTCTGTTGATTCAAAGAGGTTCTTGTAATTGCGACAGGTAGAATGTTCTACTCTAAACTACTTGTGTACTAATTACTTGTATTTAACAGATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAG</genome_strand>
        <mrna_strand>CGCTATACACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACG............................................................................................................................CCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG.......................................................................................................GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT............................................................................................GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCACAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGACGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACAGCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313062" ref_strand="+" ref_description="SGN-E313062 [cTOA-14-D19]">
      <seq>atcaacgttggtacaaggcaattcggggagcatgtctgcagcattgcagcaaatgcaagggcgccctcagatggctgcggatattaaaacggaagtgaacttgagtggtactcagaaatctttgcccatggatccttcatcaatttatgggcaagctattctacagtcgaagtcaggactcagcggtgcaggcttaaatcaaggtatgactggtttaccattgaagggctggccgttaactggaattgaccatttgaggccaagtgtgggtttgcaagtacagaagcccaatatacagaaccaaaatcaatatcttttggcatcacaacaacagcagcaggctcttgcacaggctcaagcacaaggtaacctgaattcccctagctatggatatggtggattaccaagaggtaacttcaatgcaaaagatggtcagccaccgagaaatgacggatccatatgctctccagtacaatcaaattcaccaaagatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59443" stop="61781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59614" g_stop="59620" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59621" i_stop="59748" i_length="128">
            <donor d_prob="0.806" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59749" g_stop="59820" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="79" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59924" g_stop="60035" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="191" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61087" g_stop="61136" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="241" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61229" g_stop="61477" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="490" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61478" i_stop="61685" i_length="208">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61686" g_stop="61693" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="498" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E313062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59614" e_stop="59620"/>
          <exon e_start="59749" e_stop="59820"/>
          <exon e_start="59924" e_stop="60035"/>
          <exon e_start="61087" e_stop="61136"/>
          <exon e_start="61229" e_stop="61477"/>
          <exon e_start="61686" e_stop="61693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACGGTATGAGTGGTGCAAGATCTTTTGTAACGTCTCCTCCATTTGTTGCATTACTTTAGGTAGACTCTATTAATTTGTTTTATGCTATATCTGAACTTCTACCTGCATTTGTTCTCTGTTGATTCAGCCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCGGTAACTAGTTGACCTCTTATATCGGCAGAGATATCTACTTATTGTTGAGTTTATTTTGTCGTCTTGGACCAAGCTTAGCCCGATATTCTTGGAAAATGTGTAGGATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAGGTACTGTCGTCTTGGTTGCTCAGCACCTTTTGTCCACTACTCAACTAGTGATCTCTTGTCATAAAATATTTCCTTTTTACATGTAATCGCATGGAATCAGTTTGGCATATTATCTTATTTATCCTTGAAAGGAAGCATGGAGTTCTCTTAATGAACTCTTTCAATTCATATCTCTGCAACTCGGACATCCTTAGTGTGTTTTTTCCATATATTTTTCCCATATAGCATTCATTTGCCGTAATCTAAGCTCTTTGATTCTTCCATTTATTGGCTACCAGACAAATGTATATTCCTCTCCTATATGGTAACTTTCATGAATTAAATTGCTCTTTCTCTTTCCTGTACTGCAAGTTCTAGAAGATTAAAGCTTCCACTTTTAGAGGATTGGATAAGGACTTCAAAAATGATTATTTCCATCTTCAATCTGTTCCAAGTTCAACTATATACAAATAACATAACTAGTGCAATACCTGCCGCCTACATTTTTGCGTCATTGCATCCCTTTTTTGGCATAGCTGATTGTCCATGATATCCATGTTTGTTTTATGTAGATTTTTGGAGTCAATTCCTGATCGTGCTCCTTCAACTGGCATCATTCATATTTTCTTACTAATATTTCTTGTTTGTTACTGCTGAATTCTTTAGCATCCGTAGTGGACATATATCTAATAATCACTGTTAGGATGTTCCACAGCCATTGCTGTTATGATTTATTTATTACCTTTTTAATGTGACCTTTTGGTGAATTGTCTGGTATATCAAGCATGTGTGTTTAGCAGAAACAGTTGGTGTGAGTTTAAGTAGATTTTTGAGTGATGTGTTCTTTTCTGGGTATGTTCTTGTCGTTGTTATCTTTTTGTTGGTCTCTGTATAGTGGATTTTGATTTTGAGAAGTTCTGTGTTTCTCTTTTTTTCTTTGATTTTGTTTTTTTTTTTATTTTTGGGGGAGGGGGTATTAAGACGGGGTTGGTAGTTCTAACTCAATTTTGTTGATGATTATATTGGCGGCCACTGGGGTAATTTGTCCTTTCATTTTCTCCTGCTTCTTTAGGCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACTGTAAGTTACTAATTGCTTTCATTCATCTTAAAAGTTGAATTTCTACAATTTCGATGTTAATGTCTGGCTGCTTTACTCATTGATATTGACAGGGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAGGTTAGGTCTACTTACCTAGAATGAAGAAAAGTACCTGCATTGGCTAGTTATGTTTTGCATTGTCCAGTATGCAATCTTAAAGACTATTTGTCACACCGTGGCGCATGGATTGTCTTTCTCTTAGTTCAAAATTTTAATGCGTTGTTTAGTGCAAAGATCAATTTTAACTGTGTTTTCCTCAAGATGCTTGTGTTTTGTTCCTTTCTAGAGCTAAAA</genome_strand>
        <mrna_strand>ATCAACG................................................................................................................................TTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG.......................................................................................................GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT............................................................................................GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAG................................................................................................................................................................................................................ATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328916" ref_strand="+" ref_description="SGN-E328916 [cTOC-24-L11]">
      <seq>cggaagtgaacttgagtggtactcagaaatctttgcccatggatccttcatcaatttatgggcaagctattctacagtcgaagtcaggactcagcggagcaggcttaaatcaaggtatgactggtttaccattgaagggctggccgttaactggaattgaccatttgaggccaactgtgggtttgcaagtacagaagcccaatatacagaaccaaaatcaatatcttttggcatcacaacaacagcagcaggctcttgcacaggctcaagcacaaggtaacctgaattcccctagctatggatatggtggattaccaagaggtaacttcaatgctaaagatggtcacccaccgagaaatgaccgatccatatgctctccagtacaatcaaattccccaaagatgaaaatggcccaaattccacaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59634" stop="62999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59934" g_stop="60035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051">
            <donor d_prob="0.013" d_score="0.98"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61087" g_stop="61136" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="152" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61229" g_stop="61477" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="401" r_length="249" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61478" i_stop="62672" i_length="1195">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62673" g_stop="62699" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="429" r_length="28" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E328916" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59934" e_stop="60035"/>
          <exon e_start="61087" e_stop="61136"/>
          <exon e_start="61229" e_stop="61477"/>
          <exon e_start="62673" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAGGTACTGTCGTCTTGGTTGCTCAGCACCTTTTGTCCACTACTCAACTAGTGATCTCTTGTCATAAAATATTTCCTTTTTACATGTAATCGCATGGAATCAGTTTGGCATATTATCTTATTTATCCTTGAAAGGAAGCATGGAGTTCTCTTAATGAACTCTTTCAATTCATATCTCTGCAACTCGGACATCCTTAGTGTGTTTTTTCCATATATTTTTCCCATATAGCATTCATTTGCCGTAATCTAAGCTCTTTGATTCTTCCATTTATTGGCTACCAGACAAATGTATATTCCTCTCCTATATGGTAACTTTCATGAATTAAATTGCTCTTTCTCTTTCCTGTACTGCAAGTTCTAGAAGATTAAAGCTTCCACTTTTAGAGGATTGGATAAGGACTTCAAAAATGATTATTTCCATCTTCAATCTGTTCCAAGTTCAACTATATACAAATAACATAACTAGTGCAATACCTGCCGCCTACATTTTTGCGTCATTGCATCCCTTTTTTGGCATAGCTGATTGTCCATGATATCCATGTTTGTTTTATGTAGATTTTTGGAGTCAATTCCTGATCGTGCTCCTTCAACTGGCATCATTCATATTTTCTTACTAATATTTCTTGTTTGTTACTGCTGAATTCTTTAGCATCCGTAGTGGACATATATCTAATAATCACTGTTAGGATGTTCCACAGCCATTGCTGTTATGATTTATTTATTACCTTTTTAATGTGACCTTTTGGTGAATTGTCTGGTATATCAAGCATGTGTGTTTAGCAGAAACAGTTGGTGTGAGTTTAAGTAGATTTTTGAGTGATGTGTTCTTTTCTGGGTATGTTCTTGTCGTTGTTATCTTTTTGTTGGTCTCTGTATAGTGGATTTTGATTTTGAGAAGTTCTGTGTTTCTCTTTTTTTCTTTGATTTTGTTTTTTTTTTTATTTTTGGGGGAGGGGGTATTAAGACGGGGTTGGTAGTTCTAACTCAATTTTGTTGATGATTATATTGGCGGCCACTGGGGTAATTTGTCCTTTCATTTTCTCCTGCTTCTTTAGGCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACTGTAAGTTACTAATTGCTTTCATTCATCTTAAAAGTTGAATTTCTACAATTTCGATGTTAATGTCTGGCTGCTTTACTCATTGATATTGACAGGGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAGGTTAGGTCTACTTACCTAGAATGAAGAAAAGTACCTGCATTGGCTAGTTATGTTTTGCATTGTCCAGTATGCAATCTTAAAGACTATTTGTCACACCGTGGCGCATGGATTGTCTTTCTCTTAGTTCAAAATTTTAATGCGTTGTTTAGTGCAAAGATCAATTTTAACTGTGTTTTCCTCAAGATGCTTGTGTTTTGTTCCTTTCTAGAGCTAAAAGGAGGAGACATGACGTTGAAGGCATCAAGGCAATGCATGCCAATTTTGAGGTCGCTGAAGGCAATTGACTAAAATAATTAGGAAATAGAGTAGAATAAACTGAATCGTGTTGAGAAGTAACCTAATCTGGACTAAAAATTTTAAGGGAGACCGAGAGAGATTCTTAAGTTTCCTTTTCTTCTTTACCCATCTAGAGGGTGATCAGTTCTTAAGAAGGCTGGAGCAGATTATGGGAGCGCCTGATGATATGTTAGTTTGTTAGTAATAATAAAGTAGTTAATTGAAGGGATAGTGTTTTACCTTGCTATCTCTTTCCTTGTCGAGGATTCTCATTTGGGATGTTTTCTTCACTTAGTGTGAAAACCACAGTAAGTTCTCTAGAGTAAGGTGGTTAAAGTTAACAGTCCTTAATTTCCTGGTGCGTTGGTATTTAACAAATGAGAGCTGGCCGTGCTTTACTGCCTCCAGATTCTTTAACTTTGAACTATTATGTAGTTCATCAAGCCTTCACTTTGACCTTGCCATTTTAGGATAAGCCTTTTCCATGTTAGGACGCAAGAACAAACATTGCAGACTAGTGGGAGTCTGTGATGAAGGGATTGTATGTAGAAATTTATCTTGATTCTTAGTCACTGAAGTGCCAGGATTATATATCAAGGCTGATGGCAAGTGAAACTAATTATCAGAACCTAGATCTCAACCAAAATGCAATGAGACCTTATCTTTTGGCTAAGGTATTAGCACTTGCTTTACTACTGGATTGTACATCTTTCAGTTTAATTGGCACCATTACAGCTGTCTTGAGCAGTTGACATGCCTTAGCTTCTTAAACTGTTCCTCACTGGCTTATTGTGTGTGATGATATGTATGGTTTTAAACAATTATGTGTCTTCTGTTGATTCAAAGAGGTTCTTGTAATTGCGACAGGTAGAATGTTCTACTCTAAACTACTTGTGTACTAATTACTTGTATTTAACAGATGAAAATGGCCCAAATTCCAC-AATCC</genome_strand>
        <mrna_strand>CGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT............................................................................................GGAATTGACCATTTGAGGCCAACTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCTAAAGATGGTCACCCACCGAGAAATGACCGATCCATATGCTCTCCAGTACAATCAAATTCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGCCCAAATTCCACAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312748" ref_strand="+" ref_description="SGN-E312748 [cTOA-8-K16]">
      <seq>tccagtacaatcaaattcaccaaagatgaaaatggcccaaattccacaatcctcctctcaacaacaggaccagttgcagcagcaactgccacagaatggaagaaaaaggaagcagcattcgtcgtctggacctgccaatagtactggcaccggaaatactgttggcccttcaccaagctcaccagcatcaactcatacacctggtgacgggatgactagtgccagtagtctgcagcatgttggcagtgtgtcaaaaagcatgatgatgtatggaggagatggaactggtggtatagcatcctctacaaatcagctggatgacttggagacgtttggagacattggttccctggaagataacgtggagtcatttttatcaaatgatgggggagatggtaatatctatggagcaatgaaacaaacgattactgagcacaaacctgagtcttctaaaggcgggttctccttcggtgaagttggttgtatacgcacaaggaataaagtcacttgctgccatttctcatcagatggaaagctgctcgctagtgccggacatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61153" stop="64006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61453" g_stop="61477" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61478" i_stop="62672" i_length="1195">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62741" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="94" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62742" i_stop="62972" i_length="231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62973" g_stop="63194" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="316" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63195" i_stop="63383" i_length="189">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63384" g_stop="63525" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="458" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63604" g_stop="63706" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="561" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E312748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61453" e_stop="61477"/>
          <exon e_start="62673" e_stop="62741"/>
          <exon e_start="62973" e_stop="63194"/>
          <exon e_start="63384" e_stop="63525"/>
          <exon e_start="63604" e_stop="63706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTACAATCAAATTCACCAAAGGTTAGGTCTACTTACCTAGAATGAAGAAAAGTACCTGCATTGGCTAGTTATGTTTTGCATTGTCCAGTATGCAATCTTAAAGACTATTTGTCACACCGTGGCGCATGGATTGTCTTTCTCTTAGTTCAAAATTTTAATGCGTTGTTTAGTGCAAAGATCAATTTTAACTGTGTTTTCCTCAAGATGCTTGTGTTTTGTTCCTTTCTAGAGCTAAAAGGAGGAGACATGACGTTGAAGGCATCAAGGCAATGCATGCCAATTTTGAGGTCGCTGAAGGCAATTGACTAAAATAATTAGGAAATAGAGTAGAATAAACTGAATCGTGTTGAGAAGTAACCTAATCTGGACTAAAAATTTTAAGGGAGACCGAGAGAGATTCTTAAGTTTCCTTTTCTTCTTTACCCATCTAGAGGGTGATCAGTTCTTAAGAAGGCTGGAGCAGATTATGGGAGCGCCTGATGATATGTTAGTTTGTTAGTAATAATAAAGTAGTTAATTGAAGGGATAGTGTTTTACCTTGCTATCTCTTTCCTTGTCGAGGATTCTCATTTGGGATGTTTTCTTCACTTAGTGTGAAAACCACAGTAAGTTCTCTAGAGTAAGGTGGTTAAAGTTAACAGTCCTTAATTTCCTGGTGCGTTGGTATTTAACAAATGAGAGCTGGCCGTGCTTTACTGCCTCCAGATTCTTTAACTTTGAACTATTATGTAGTTCATCAAGCCTTCACTTTGACCTTGCCATTTTAGGATAAGCCTTTTCCATGTTAGGACGCAAGAACAAACATTGCAGACTAGTGGGAGTCTGTGATGAAGGGATTGTATGTAGAAATTTATCTTGATTCTTAGTCACTGAAGTGCCAGGATTATATATCAAGGCTGATGGCAAGTGAAACTAATTATCAGAACCTAGATCTCAACCAAAATGCAATGAGACCTTATCTTTTGGCTAAGGTATTAGCACTTGCTTTACTACTGGATTGTACATCTTTCAGTTTAATTGGCACCATTACAGCTGTCTTGAGCAGTTGACATGCCTTAGCTTCTTAAACTGTTCCTCACTGGCTTATTGTGTGTGATGATATGTATGGTTTTAAACAATTATGTGTCTTCTGTTGATTCAAAGAGGTTCTTGTAATTGCGACAGGTAGAATGTTCTACTCTAAACTACTTGTGTACTAATTACTTGTATTTAACAGATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAGGTTGGTTTAATCAGATAGAGTTCACTTCTGATTTTATCTTTGTTGATATCTACCAACAACCATGTCCGCATAAGTACTTCTAACAATGTAACTGTTTATCTTGCATGTGGCTTCTCGTTTTTTTTCTTTTCATGTTTCAAAATTTTTTATTTAATTTTTAGAGAAGTTAAGTTACCTTACTTATCAGAGCCAATGGAAGAGAAGTTTACCTATCTTCCTCCTGTGATTCAGAATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTGGTAAAACTTGTCGTCTTTGATCTACATTCTTTGTATTTTGCACTTTGGAGCATGTTATATTTGTAAAAAAGTACTTAGTTATCTTATAGCTTCCAGTATTTTTGATGAATAAGAAAGTTTATTAGTTTTTTTATGCATTTTGAAGTTAAATTTGATATATATCATCTCCGGTATGCCTTTATTGTACAGGATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCGGTAATGCAAGTTTGACTTGTATACATGCTTTCTTTGTTGTATTTGTTGCCAGTTCACTAAGAGGATAAATTATCTCAGGGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAA</genome_strand>
        <mrna_strand>TCCAGTACAATCAAATTCACCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAG.......................................................................................................................................................................................................................................AATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTG.............................................................................................................................................................................................GATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG..............................................................................GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707847" ref_strand="+" ref_description="SGN-E707847 [FA34AE10]">
      <seq>ctcttctcaacaacaggaccagttgcagcagcaacagcaacagcagcaactgccacagaatggaagaaaaaggaagcagcattcgtcgtctggacctgccaatagtactggcaccggaaatactgttggcccttcaccaagctcaccagcatcaactcatacacctggtgacgggatgactagtgccagtagtctgcagcatgttggcagtgtgtcaaaaagcatgatgatgtatggaggagatggaactggtggtatagcatcctctacaaatcagctggatgacttggagacgtttggagacattgtttccctggaagataacgtggagtcatttttatcaaatgatgggggagatggtaatatctatggagcaatgaaacaaacgattactgagcacaaacctgagtcttctaaaggcgggttctccttcggtgaagttggttgtatacgcacaaggaataaagtcacttgctgccatttctcatcagatggaaagctgctcgctagtgccggacatgacaaaaaggctgttctgtggaacatggataccttacaaacggagaccaccccagaagaacatcaattcttgattacagatgtccggttcaggcctaattcgactcagcttgcaactgcttcatttgataagtctgtgagattgtgggatgctgccaatcctggctactgtttgaattcatacaccgggcattcttctcatgttatgtcgctggatttccatccgaaaaagaatgatctgttctgtttctgtgatagcaacgatgagattcggtactggactattagtccattctcatgtactcgagtgtcaaagcaaggaggcagtgcacaagtgagattccagccaataactggtcagctgctggcagctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62399" stop="64908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62699" g_stop="62741" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62742" i_stop="62957" i_length="216">
            <donor d_prob="0.997" d_score="0.93"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62958" g_stop="63194" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63195" i_stop="63383" i_length="189">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63384" g_stop="63525" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="422" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63604" g_stop="63710" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="529" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63711" i_stop="63949" i_length="239">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63950" g_stop="64099" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="679" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64300" g_stop="64455" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="835" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64456" i_stop="64546" i_length="91">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64547" g_stop="64608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="897" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E707847" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62699" e_stop="62741"/>
          <exon e_start="62958" e_stop="63194"/>
          <exon e_start="63384" e_stop="63525"/>
          <exon e_start="63604" e_stop="63710"/>
          <exon e_start="63950" e_stop="64099"/>
          <exon e_start="64300" e_stop="64455"/>
          <exon e_start="64547" e_stop="64608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAGGTTGGTTTAATCAGATAGAGTTCACTTCTGATTTTATCTTTGTTGATATCTACCAACAACCATGTCCGCATAAGTACTTCTAACAATGTAACTGTTTATCTTGCATGTGGCTTCTCGTTTTTTTTCTTTTCATGTTTCAAAATTTTTTATTTAATTTTTAGAGAAGTTAAGTTACCTTACTTATCAGAGCCAATGGAAGAGAAGTTTACCTATCTTCCTCCTGTGATTCAGAATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTGGTAAAACTTGTCGTCTTTGATCTACATTCTTTGTATTTTGCACTTTGGAGCATGTTATATTTGTAAAAAAGTACTTAGTTATCTTATAGCTTCCAGTATTTTTGATGAATAAGAAAGTTTATTAGTTTTTTTATGCATTTTGAAGTTAAATTTGATATATATCATCTCCGGTATGCCTTTATTGTACAGGATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCGGTAATGCAAGTTTGACTTGTATACATGCTTTCTTTGTTGTATTTGTTGCCAGTTCACTAAGAGGATAAATTATCTCAGGGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAGGTAGAAAGGCACTTCCATATAATCTAACATCTTTAGCATATGTGATAATTGGATGCCTTTTAATGGAACTCCTTTTTACTTCATCAACAAATGGGTTTCATTTCATTCCAATGGTGGATGTGCTTTCAGTGGTTAAATCTTCGTTATACTTCACTACTGACTGAGCATTTTCTGCTGTACTTTTGTTTTTCACTAGATCAGTTGTCCTTATAAGTTCTTTCCTCCTGTGTATTTATCAGGCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAATGTAATTGTTTAGACATTTTCTGCTGAATAATTATTAATCACCTTGTTGAAGCAGGCCTTACCTCTAGTCGCTTACAACATGACACCTGATAGTTCATATTTTTAGATATCCGATTGTCATGTATTTTTCAACAATATGTATATTTTTTAACTACATATTCACACTCACATGATCCCTTGTCAAATTTATTTCTTTTGCAGCCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAGGTTTGCCTTTTAGTTTTCATTATGTTTAATTGATTTGTTGTGATAATATCCCTAGAACTATCTTCAAACTGTCTCCTCTCTCTATTTGTAGCAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATC</genome_strand>
        <mrna_strand>CTCTTCTCAACAACAGGACCAGTTGCAGCAGCAACAGCAACAG........................................................................................................................................................................................................................CAGCAACTGCCACAGAATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTG.............................................................................................................................................................................................GATGACTTGGAGACGTTTGGAGACATTGTTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG..............................................................................GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAG...............................................................................................................................................................................................................................................GCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT........................................................................................................................................................................................................CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAG...........................................................................................CAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202395" ref_strand="+" ref_description="SGN-E202395 [cLEC-6-N2]">
      <seq>tcagctggatgacttggagacgtttggagacattggttccctggaagataacgtggagtcatttttatcaaatgatgggggagatggtaatatctatggagcaatgaaacaaacgattactgagcacaaacctgagtcttctaaaggcgggttctccttcggtgaagttggttgtatacgcacaaggaataaagtcacttgctgccatttctcatcagatggaaagctgctcgctagtgccggacatgacaaaaaggctgttctgtggaacatggataccttacaaacggagaccaccccagaagaacatcaattcttgattacagatgtccggttcaggcctaattcgactcagcttgcaactgcttcatttgataagtctgtgagattgtgggatgctgccaatcctggctactgtttgaattcatacaccgggcattcttctcatgttatgtcgctggatttccatccgaaaaagaatgatctgttctgtttctgtgatagcaacgatgagattcggtactggactattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63078" stop="64728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63188" g_stop="63194" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63195" i_stop="63383" i_length="189">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63384" g_stop="63525" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="149" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63604" g_stop="63710" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="256" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63711" i_stop="63949" i_length="239">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63950" g_stop="64099" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="406" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64300" g_stop="64428" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="535" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E202395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63188" e_stop="63194"/>
          <exon e_start="63384" e_stop="63525"/>
          <exon e_start="63604" e_stop="63710"/>
          <exon e_start="63950" e_stop="64099"/>
          <exon e_start="64300" e_stop="64428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGGTAAAACTTGTCGTCTTTGATCTACATTCTTTGTATTTTGCACTTTGGAGCATGTTATATTTGTAAAAAAGTACTTAGTTATCTTATAGCTTCCAGTATTTTTGATGAATAAGAAAGTTTATTAGTTTTTTTATGCATTTTGAAGTTAAATTTGATATATATCATCTCCGGTATGCCTTTATTGTACAGGATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCGGTAATGCAAGTTTGACTTGTATACATGCTTTCTTTGTTGTATTTGTTGCCAGTTCACTAAGAGGATAAATTATCTCAGGGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAGGTAGAAAGGCACTTCCATATAATCTAACATCTTTAGCATATGTGATAATTGGATGCCTTTTAATGGAACTCCTTTTTACTTCATCAACAAATGGGTTTCATTTCATTCCAATGGTGGATGTGCTTTCAGTGGTTAAATCTTCGTTATACTTCACTACTGACTGAGCATTTTCTGCTGTACTTTTGTTTTTCACTAGATCAGTTGTCCTTATAAGTTCTTTCCTCCTGTGTATTTATCAGGCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAATGTAATTGTTTAGACATTTTCTGCTGAATAATTATTAATCACCTTGTTGAAGCAGGCCTTACCTCTAGTCGCTTACAACATGACACCTGATAGTTCATATTTTTAGATATCCGATTGTCATGTATTTTTCAACAATATGTATATTTTTTAACTACATATTCACACTCACATGATCCCTTGTCAAATTTATTTCTTTTGCAGCCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGT</genome_strand>
        <mrna_strand>TCAGCTG.............................................................................................................................................................................................GATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG..............................................................................GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAG...............................................................................................................................................................................................................................................GCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT........................................................................................................................................................................................................CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204893" ref_strand="+" ref_description="SGN-E204893 [cLEC-14-H6]">
      <seq>aatatctatggagcaatgaaacaaacgattactgagcacaaacctgagtcttctaaaggcgggttctccttcggtgaagttggttgtatacgcacaaggaataaagtcacttgctgccatttctcatcagatggaaagctgctcgctagtgccggacatgacaaaaaggctgttctgtggaacatggataccttacaaacggagaccaccccagaagaacatcaattcttgattacagatgtccggttcaggcctaattcgactcagcttgcaactgcttcatttgataagtctgtgagattgtgggatgctgccaatcctggctactgtttgaattcatacaccgggcattcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63165" stop="64639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63465" g_stop="63525" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63604" g_stop="63710" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="168" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63711" i_stop="63949" i_length="239">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63950" g_stop="64099" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="318" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64300" g_stop="64339" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="358" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E204893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63465" e_stop="63525"/>
          <exon e_start="63604" e_stop="63710"/>
          <exon e_start="63950" e_stop="64099"/>
          <exon e_start="64300" e_stop="64339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCGGTAATGCAAGTTTGACTTGTATACATGCTTTCTTTGTTGTATTTGTTGCCAGTTCACTAAGAGGATAAATTATCTCAGGGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAGGTAGAAAGGCACTTCCATATAATCTAACATCTTTAGCATATGTGATAATTGGATGCCTTTTAATGGAACTCCTTTTTACTTCATCAACAAATGGGTTTCATTTCATTCCAATGGTGGATGTGCTTTCAGTGGTTAAATCTTCGTTATACTTCACTACTGACTGAGCATTTTCTGCTGTACTTTTGTTTTTCACTAGATCAGTTGTCCTTATAAGTTCTTTCCTCCTGTGTATTTATCAGGCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAATGTAATTGTTTAGACATTTTCTGCTGAATAATTATTAATCACCTTGTTGAAGCAGGCCTTACCTCTAGTCGCTTACAACATGACACCTGATAGTTCATATTTTTAGATATCCGATTGTCATGTATTTTTCAACAATATGTATATTTTTTAACTACATATTCACACTCACATGATCCCTTGTCAAATTTATTTCTTTTGCAGCCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTC</genome_strand>
        <mrna_strand>AATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG..............................................................................GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAG...............................................................................................................................................................................................................................................GCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT........................................................................................................................................................................................................CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709803" ref_strand="+" ref_description="SGN-E709803 [FA53AH04]">
      <seq>cggagaccaccccataagaacatcaattcttgattacagatgtccggttcaggcctaattcgactcagcttgcaactgcttcatttgataagtctgtgagattgtgggatgctgccaatcctggctactgtttgaattcatacaccgggcattcttctcatgttatgtcgctggatttccatccgaaaaagaatgatctgttctgtttctgtgatagcaacgatgagattcggtactggactattagtccattctcatgtactcgagtgtcaaagcaaggaggcagtgcacaagtgagattccagccaataactggtcagctgctggcagctgcatcagataaggtggtatccatctttgatgtcgaaaatgacaggcaactgcagtctttccagggacatactggagtggtgaactacctttgttgggatctcaatggtgatctactggcatcagtaagtgaggagtctgtcaaagtttggtcactgaacactggtgattgcatccacgagctaagttcaaacggaaatcagttccactcttgtgtatttcaccctagttattcagctctattggtgattggaggaatgaggtctttggagctgtggaacatggttgagaataaaagcatgacaattccagcacatgaaaacattgtcgccgctctagcacagtcaccagtgagtggaatggttgcttctgcaagtcatgacagttctgtgaagttatggaaataaaactaggagaggatttgatgccgcgatatatatgcgcttcaggtgttagggaaaagtccgtctatgttgttttagtgtattgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63681" stop="65649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63981" g_stop="64099" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64300" g_stop="64455" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="275" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64456" i_stop="64546" i_length="91">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64547" g_stop="64666" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="395" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64667" i_stop="64799" i_length="133">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64800" g_stop="64997" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="593" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65118" g_stop="65349" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="825" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E709803" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63981" e_stop="64099"/>
          <exon e_start="64300" e_stop="64455"/>
          <exon e_start="64547" e_stop="64666"/>
          <exon e_start="64800" e_stop="64997"/>
          <exon e_start="65118" e_stop="65349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAATGTAATTGTTTAGACATTTTCTGCTGAATAATTATTAATCACCTTGTTGAAGCAGGCCTTACCTCTAGTCGCTTACAACATGACACCTGATAGTTCATATTTTTAGATATCCGATTGTCATGTATTTTTCAACAATATGTATATTTTTTAACTACATATTCACACTCACATGATCCCTTGTCAAATTTATTTCTTTTGCAGCCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAGGTTTGCCTTTTAGTTTTCATTATGTTTAATTGATTTGTTGTGATAATATCCCTAGAACTATCTTCAAACTGTCTCCTCTCTCTATTTGTAGCAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATCAGATAAGGTGGTATCCATCTTTGATGTCGAAAATGACAGGCAACTGCAGTCTTTCCAGGTTTTTCTTCAACTATTATGTGTGGTGGATTACATCAACTGTTACTTAACAACCATCTATGTTTCTTGCACTTTCATATTTTCTGTTTGTTCCAACCATGATTCCTCACTTGGCAAGATAATTGCGTTTGCAGGGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGGGTAAATATTTGTTCTTTTTTGCAAATCATTCCTGTGAATGTTATTCAGAAAGTTTACCCACTTACAAATCTTGTTGTCTACAATTTTACTAATTCTTGTTTTGTGAATCCATGCCTACAGTCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATC</genome_strand>
        <mrna_strand>CGGAGACCACCCCATAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT........................................................................................................................................................................................................CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAG...........................................................................................CAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATCAGATAAGGTGGTATCCATCTTTGATGTCGAAAATGACAGGCAACTGCAGTCTTTCCAG.....................................................................................................................................GGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG........................................................................................................................TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260979" ref_strand="+" ref_description="SGN-E260979 [cLEG-55-N14]">
      <seq>tcatttgataagtctgtgagattgtgggatgctgccaatcctggctactgtttgaattcatacaccgggcattcttctcatgttatgtcgctggatttccatccgaaaaagaatgatctgttctgtttctgtgatagcaacgatgagattcggtactggactattagtccattctcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63761" stop="64740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64099" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200">
            <donor d_prob="0.823" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64300" g_stop="64440" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="180" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E260979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64099"/>
          <exon e_start="64300" e_stop="64440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAATGTAATTGTTTAGACATTTTCTGCTGAATAATTATTAATCACCTTGTTGAAGCAGGCCTTACCTCTAGTCGCTTACAACATGACACCTGATAGTTCATATTTTTAGATATCCGATTGTCATGTATTTTTCAACAATATGTATATTTTTTAACTACATATTCACACTCACATGATCCCTTGTCAAATTTATTTCTTTTGCAGCCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGT</genome_strand>
        <mrna_strand>TCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT........................................................................................................................................................................................................CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351993" ref_strand="+" ref_description="SGN-E351993 [cTOS-13-K21]">
      <seq>ggacatactggagtggtgaactacctttgttgggatctcaatggtgatctactggcatcagtaagtgaggagtctgtcaaagtttggtcactgaacactggtgattgcatccacgagctaagttcaaacggaaatcagttccactcttgtgtatttcaccctagttattcagctctattggtgattggaggaatgaggtctttggagctgtggaacatggttgagaataaaagcatgacaattccagcacatgaaaacattgtcgccgctctagcacagtcaccagtgagtggaatggttgcttctgcaagtcatgacagttctgtgaagttatggaaataaaactaggagaggatttgatgccgcgatatatatgcgcttcaggtgttagggaaaagtccgtctatgttgttttagtgtattgttgatcagaaaatatcaatttttctgcttgttagtcatcacattagagtttggtttgcttaaagcaagttgagcatactgattgctgagcaatggttcggtagtgtaatgtctgcaactgttctcagtgattaacaactaataataacatgatatcaagtttaagcttatttcggctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64500" stop="65828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64800" g_stop="64997" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65118" g_stop="65531" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="612" r_length="414" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E351993" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64800" e_stop="64997"/>
          <exon e_start="65118" e_stop="65531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGGGTAAATATTTGTTCTTTTTTGCAAATCATTCCTGTGAATGTTATTCAGAAAGTTTACCCACTTACAAATCTTGTTGTCTACAATTTTACTAATTCTTGTTTTGTGAATCCATGCCTACAGTCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTACAATATTC</genome_strand>
        <mrna_strand>GGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG........................................................................................................................TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218521" ref_strand="+" ref_description="SGN-E218521 [cLEL-18-C6](-)">
      <seq>atttcaccctagttattcagctctattggtgattggaggaatgaggtctttggagctgtggaacatggttgagaataaaagcatgacaattccagcacatgaaaacattgtcgccgctctagcacagtcaccagtgagtggaatggttgcttctgcaagtcatgacagttctgtgaagttatggaaataaaactaggagaggatttgatgccgcgatatatatgcgcttcaggtgttagggaaaagtccgtctatgttgttttagtgtattgttgatcagaaaatatcaatttttctgcttgttagtcatcacattagagtttggtttgcttaaagcaagttgagcatactgattgctgagcaatggttcggtagtgtaatgtctgcaactgttctcagtgattaacaactaatcataacatgatatcaagtttaagcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64652" stop="65812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64952" g_stop="64997" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65118" g_stop="65511" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="440" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="459"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E218521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64952" e_stop="64997"/>
          <exon e_start="65118" e_stop="65511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGGGTAAATATTTGTTCTTTTTTGCAAATCATTCCTGTGAATGTTATTCAGAAAGTTTACCCACTTACAAATCTTGTTGTCTACAATTTTACTAATTCTTGTTTTGTGAATCCATGCCTACAGTCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTT</genome_strand>
        <mrna_strand>ATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG........................................................................................................................TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATCATAACATGATATCAAGTTTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735030" ref_strand="+" ref_description="SGN-E735030 [LB14BA03]">
      <seq>cctagttattcagctctattggtgattggaggaatgaggtctttggagctgtggaacatggttgagaataaaagcatgacaattccagcacatgaaaacattgtcgccgctctagcacagtcaccagtgagtggaatggttgcttctgcaagtcatgacagttctgtgaagttatggaaataaaactaggagaggatttgatgccgcgatatatatgcgcttcaggtgttagggaaaagtccgtctatgttgttttagtgtattgttgatcagaaaatatcaatttttctgcttgttagtcatcacattagagtttggtttgcttaaagcaagttgagcatactgattgctgagcaatggttcggtagtgtaatgtctgcaactgttctcagtgattaacaactaataataacatgatatcaagtttaagcttatttcggctgtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64659" stop="65828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64959" g_stop="64997" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120">
            <donor d_prob="0.795" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65118" g_stop="65525" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="447" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="471"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E735030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64959" e_stop="64997"/>
          <exon e_start="65118" e_stop="65525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGGGTAAATATTTGTTCTTTTTTGCAAATCATTCCTGTGAATGTTATTCAGAAAGTTTACCCACTTACAAATCTTGTTGTCTACAATTTTACTAATTCTTGTTTTGTGAATCCATGCCTACAGTCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTACA</genome_strand>
        <mrna_strand>CCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG........................................................................................................................TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339434" ref_strand="+" ref_description="SGN-E339434 [cTOF-4-F15]">
      <seq>tgaacaaagcaaaaattagggttttctttgtgttgccgaccaacgacgatgatttacgacgtgaattcgccgcttttccgatccttcctcagccagaagggaggcgcatctgacaagaggaaaaccgaagagcagaagcccaaggaacagaggccaaaagcaagtgaaaacaaacctgttatgaatgagtgaaagctgccagatgtttaacttattttagcatatctggaatgttgttaagcaactcttttacaagatgtggaatatgtactgaatttgacatttaaatggatcatatatcttttaagatatttgatcctttacttctanttggttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70549" stop="72854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70849" g_stop="70967" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72334" g_stop="72553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="340" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="341" polyA_stop="351"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E339434" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70849" e_stop="70967"/>
          <exon e_start="72334" e_stop="72553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAGGTACATATGAATTCTCTCGCTAACCGTAAATTCATCATCGCTCAATGTTTTATGCTCATTATGCAATGTTTTCCGATTTGTTGTTCAGGAGGTATTATGAATTTATGATTTATGCTGTAGGTTAGACTTATTAGGGTTACATTCTCAAATTCATAGCCTAACCTAACACGTTAAGTTTAATAGTTTGTGAGGTGGATTTTGCCTGCTTGCGGAAGAAGATTCTTAATTACTAGTCTGTTAGATTTTCTTTCACATTATCTGCGACACATTGCATGCCCGATATCTTTGTTCGTTTCCGTTTAGGTGTGTTCTGGGCTTTGAATAGATTTTATATAGAAAGTTCTCGATTAGCTCTTCTCTATTGTGAGCTTTGTATAAACTTGTCAATTTGTTCTGCTCTATTGTACAACGGCGATGAGTTATGTTGGGTTTGACTATTAAATGTGTTTGATAGGAAATTGTGTGAATGCTTTTATATTATGGTCATGCTTCGTCAATACACTTTCTTGTCACGGCTGATTGTTTGTGTAAGACTGAAATTTGGATTCAGTTTCAGAAATAATTCGATTAGGAAACATGTTGACTTTTGGCTTTTCCTATGCTTTGCTCAGTAGGTATTTAATGTTATAGAGAAACCAAAGCAACCTCAGCCGTAATGATGAGATATTTTCCTCTAGATGTCATGTTTCTGTTCACGCAGCATCTCAGGTTGTCTTGTAGTATACATGTATCTTGCCAAAAAAATGTTTTCCAATGTTATTATGGCTTAATACAATCTCTAATGATTCTTGTTATGAAGCTGCTTCCGTAAGAAAACATCTTTTAGGAAAGCACTGAACTTTGCACTTCAGATCCATCAGAATCAGCTACTTGTGGCAAGTAGCTGTTTAGTTAACTGAACATTCAGATTAGAGTCTCTAATATTGTTTAGAGATCTTGAAATTGGGTTTAAAGCTCTGTTGCTCTTCAAAAATATCTCCAGGTGTGTCAGTCCTCCGAAAGCTATGTACTATTGGAGGGTCAGACACGTGTGCCAACATTTTTGGAGACATCGAGTAACATGGGTTTTAAGTACACTAAGGGGTCATTGTCATTTGGTATTGTCTTGGGATAACGTAACTCATCATGTATATGCTATAAGTTATCCCAAACATGATAACCAAACAAGACATCTAAATTTTATTCCAGGACTATTTATTATTCTTATCCCTCACACCAAACGAGAACATTCCTGTTCCTTTATCTACTGTAGTTTTCGGTCCACTTGTGTGGTTGTGTTCCTTTGTTGTCGTGTCAACAGCTGCGCTTCATACCACAAAGCATTTTATGGGGCGGTGCCTCTTAACCTTTTTGTTCAATTCTGCAGGAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTA-TTGGTTTTAA</genome_strand>
        <mrna_strand>TGAACAAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTANTTGGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244033" ref_strand="+" ref_description="SGN-E244033 [cLEE-1-O2]">
      <seq>aaagcaaaaattagggttttctttgtgttgccgaccaacgacgatgatttacgacgtgaattcgccgcttttccgatccttcctcagccagaagggaggcgcatctgacaagaggaaaaccgaagagcagaagcccaaggaacagaggccaaaagcaagtgaaaacaaacctgttatgaatgagtgaaagctgccagatgtttaacttattttagcatatctggaatgttgttaagcaactcttttacaagatgtggaatatgtactgaatttgacattgaaatggatcatatatcttttaagatatttgatcctttacttctattggttttaaatttgcgatccaagcttttgattttggcacccctttatatataaaaataaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70554" stop="72893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70854" g_stop="70967" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72334" g_stop="72585" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="366" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E244033" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70854" e_stop="70967"/>
          <exon e_start="72334" e_stop="72585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAGGTACATATGAATTCTCTCGCTAACCGTAAATTCATCATCGCTCAATGTTTTATGCTCATTATGCAATGTTTTCCGATTTGTTGTTCAGGAGGTATTATGAATTTATGATTTATGCTGTAGGTTAGACTTATTAGGGTTACATTCTCAAATTCATAGCCTAACCTAACACGTTAAGTTTAATAGTTTGTGAGGTGGATTTTGCCTGCTTGCGGAAGAAGATTCTTAATTACTAGTCTGTTAGATTTTCTTTCACATTATCTGCGACACATTGCATGCCCGATATCTTTGTTCGTTTCCGTTTAGGTGTGTTCTGGGCTTTGAATAGATTTTATATAGAAAGTTCTCGATTAGCTCTTCTCTATTGTGAGCTTTGTATAAACTTGTCAATTTGTTCTGCTCTATTGTACAACGGCGATGAGTTATGTTGGGTTTGACTATTAAATGTGTTTGATAGGAAATTGTGTGAATGCTTTTATATTATGGTCATGCTTCGTCAATACACTTTCTTGTCACGGCTGATTGTTTGTGTAAGACTGAAATTTGGATTCAGTTTCAGAAATAATTCGATTAGGAAACATGTTGACTTTTGGCTTTTCCTATGCTTTGCTCAGTAGGTATTTAATGTTATAGAGAAACCAAAGCAACCTCAGCCGTAATGATGAGATATTTTCCTCTAGATGTCATGTTTCTGTTCACGCAGCATCTCAGGTTGTCTTGTAGTATACATGTATCTTGCCAAAAAAATGTTTTCCAATGTTATTATGGCTTAATACAATCTCTAATGATTCTTGTTATGAAGCTGCTTCCGTAAGAAAACATCTTTTAGGAAAGCACTGAACTTTGCACTTCAGATCCATCAGAATCAGCTACTTGTGGCAAGTAGCTGTTTAGTTAACTGAACATTCAGATTAGAGTCTCTAATATTGTTTAGAGATCTTGAAATTGGGTTTAAAGCTCTGTTGCTCTTCAAAAATATCTCCAGGTGTGTCAGTCCTCCGAAAGCTATGTACTATTGGAGGGTCAGACACGTGTGCCAACATTTTTGGAGACATCGAGTAACATGGGTTTTAAGTACACTAAGGGGTCATTGTCATTTGGTATTGTCTTGGGATAACGTAACTCATCATGTATATGCTATAAGTTATCCCAAACATGATAACCAAACAAGACATCTAAATTTTATTCCAGGACTATTTATTATTCTTATCCCTCACACCAAACGAGAACATTCCTGTTCCTTTATCTACTGTAGTTTTCGGTCCACTTGTGTGGTTGTGTTCCTTTGTTGTCGTGTCAACAGCTGCGCTTCATACCACAAAGCATTTTATGGGGCGGTGCCTCTTAACCTTTTTGTTCAATTCTGCAGGAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAAATTTGCGATCCAAGCTTTTGATTTTGGCACCA</genome_strand>
        <mrna_strand>AAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTGAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAAATTTGCGATCCAAGCTTTTGATTTTGGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355522" ref_strand="+" ref_description="SGN-E355522 [cTOS-25-K12]">
      <seq>aaagcaaaaattagggttttctttgtgttgccgaccaacgacgatgatttacgacgtgaattcgccgcttttccgatccttcctcagccagaagggaggcgcatctgacaagaggaaaaccgaagagcagaagcccaaggaacagaggccaaaagcaagtgaaaacaaacctgttatgaatgagtgaaagctgccagatgtttaacttattttagcatatctggaatgttgttaagcaactcttttacaagatgtggaatatgtactgaatttgacatttaaatggatcatatatcttttaagatatttgatcctttacttctattggttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70554" stop="72854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70854" g_stop="70967" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72334" g_stop="72553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="334" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E355522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70854" e_stop="70967"/>
          <exon e_start="72334" e_stop="72553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAGGTACATATGAATTCTCTCGCTAACCGTAAATTCATCATCGCTCAATGTTTTATGCTCATTATGCAATGTTTTCCGATTTGTTGTTCAGGAGGTATTATGAATTTATGATTTATGCTGTAGGTTAGACTTATTAGGGTTACATTCTCAAATTCATAGCCTAACCTAACACGTTAAGTTTAATAGTTTGTGAGGTGGATTTTGCCTGCTTGCGGAAGAAGATTCTTAATTACTAGTCTGTTAGATTTTCTTTCACATTATCTGCGACACATTGCATGCCCGATATCTTTGTTCGTTTCCGTTTAGGTGTGTTCTGGGCTTTGAATAGATTTTATATAGAAAGTTCTCGATTAGCTCTTCTCTATTGTGAGCTTTGTATAAACTTGTCAATTTGTTCTGCTCTATTGTACAACGGCGATGAGTTATGTTGGGTTTGACTATTAAATGTGTTTGATAGGAAATTGTGTGAATGCTTTTATATTATGGTCATGCTTCGTCAATACACTTTCTTGTCACGGCTGATTGTTTGTGTAAGACTGAAATTTGGATTCAGTTTCAGAAATAATTCGATTAGGAAACATGTTGACTTTTGGCTTTTCCTATGCTTTGCTCAGTAGGTATTTAATGTTATAGAGAAACCAAAGCAACCTCAGCCGTAATGATGAGATATTTTCCTCTAGATGTCATGTTTCTGTTCACGCAGCATCTCAGGTTGTCTTGTAGTATACATGTATCTTGCCAAAAAAATGTTTTCCAATGTTATTATGGCTTAATACAATCTCTAATGATTCTTGTTATGAAGCTGCTTCCGTAAGAAAACATCTTTTAGGAAAGCACTGAACTTTGCACTTCAGATCCATCAGAATCAGCTACTTGTGGCAAGTAGCTGTTTAGTTAACTGAACATTCAGATTAGAGTCTCTAATATTGTTTAGAGATCTTGAAATTGGGTTTAAAGCTCTGTTGCTCTTCAAAAATATCTCCAGGTGTGTCAGTCCTCCGAAAGCTATGTACTATTGGAGGGTCAGACACGTGTGCCAACATTTTTGGAGACATCGAGTAACATGGGTTTTAAGTACACTAAGGGGTCATTGTCATTTGGTATTGTCTTGGGATAACGTAACTCATCATGTATATGCTATAAGTTATCCCAAACATGATAACCAAACAAGACATCTAAATTTTATTCCAGGACTATTTATTATTCTTATCCCTCACACCAAACGAGAACATTCCTGTTCCTTTATCTACTGTAGTTTTCGGTCCACTTGTGTGGTTGTGTTCCTTTGTTGTCGTGTCAACAGCTGCGCTTCATACCACAAAGCATTTTATGGGGCGGTGCCTCTTAACCTTTTTGTTCAATTCTGCAGGAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAA</genome_strand>
        <mrna_strand>AAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279691" ref_strand="+" ref_description="SGN-E279691 [cLER-5-F1]">
      <seq>aaaaattagggttttctttgtgttgccgaccaacgacgatgatttacgacgtgaattcgccgcttttccgatccttcctcagccagaagggaggcgcatctgacaagaggaaaaccgaagagcagaagcccaaggaacagaggccaaaagcaagtgaaaacaaacctgttatgaatgagtgaaagctgccagatgtttaacttattttagcatatctggaatgttgttaagcaactcttttacaagatgtggaatatgtactgaatttgacatttaaatggatcatatatcttttaagatatttgatcctttacttctattggttttaaatttgcgatccaagcttttgattttggcaccaattagtgtcacgccggtggtttgactaagttttacaacttgagaatcagtagggtaaccgttggaaggaagatcttctttctttcttttttttttaggaatcacaaaaccggtttaggcttcttttagtgcatttaatttaggcttctttcactgatcgcatcgagtataattttaagtggggatgattgattattcctcatatgaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70559" stop="73093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70859" g_stop="70967" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72334" g_stop="72793" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="571" r_length="462" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E279691" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70859" e_stop="70967"/>
          <exon e_start="72334" e_stop="72793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAGGTACATATGAATTCTCTCGCTAACCGTAAATTCATCATCGCTCAATGTTTTATGCTCATTATGCAATGTTTTCCGATTTGTTGTTCAGGAGGTATTATGAATTTATGATTTATGCTGTAGGTTAGACTTATTAGGGTTACATTCTCAAATTCATAGCCTAACCTAACACGTTAAGTTTAATAGTTTGTGAGGTGGATTTTGCCTGCTTGCGGAAGAAGATTCTTAATTACTAGTCTGTTAGATTTTCTTTCACATTATCTGCGACACATTGCATGCCCGATATCTTTGTTCGTTTCCGTTTAGGTGTGTTCTGGGCTTTGAATAGATTTTATATAGAAAGTTCTCGATTAGCTCTTCTCTATTGTGAGCTTTGTATAAACTTGTCAATTTGTTCTGCTCTATTGTACAACGGCGATGAGTTATGTTGGGTTTGACTATTAAATGTGTTTGATAGGAAATTGTGTGAATGCTTTTATATTATGGTCATGCTTCGTCAATACACTTTCTTGTCACGGCTGATTGTTTGTGTAAGACTGAAATTTGGATTCAGTTTCAGAAATAATTCGATTAGGAAACATGTTGACTTTTGGCTTTTCCTATGCTTTGCTCAGTAGGTATTTAATGTTATAGAGAAACCAAAGCAACCTCAGCCGTAATGATGAGATATTTTCCTCTAGATGTCATGTTTCTGTTCACGCAGCATCTCAGGTTGTCTTGTAGTATACATGTATCTTGCCAAAAAAATGTTTTCCAATGTTATTATGGCTTAATACAATCTCTAATGATTCTTGTTATGAAGCTGCTTCCGTAAGAAAACATCTTTTAGGAAAGCACTGAACTTTGCACTTCAGATCCATCAGAATCAGCTACTTGTGGCAAGTAGCTGTTTAGTTAACTGAACATTCAGATTAGAGTCTCTAATATTGTTTAGAGATCTTGAAATTGGGTTTAAAGCTCTGTTGCTCTTCAAAAATATCTCCAGGTGTGTCAGTCCTCCGAAAGCTATGTACTATTGGAGGGTCAGACACGTGTGCCAACATTTTTGGAGACATCGAGTAACATGGGTTTTAAGTACACTAAGGGGTCATTGTCATTTGGTATTGTCTTGGGATAACGTAACTCATCATGTATATGCTATAAGTTATCCCAAACATGATAACCAAACAAGACATCTAAATTTTATTCCAGGACTATTTATTATTCTTATCCCTCACACCAAACGAGAACATTCCTGTTCCTTTATCTACTGTAGTTTTCGGTCCACTTGTGTGGTTGTGTTCCTTTGTTGTCGTGTCAACAGCTGCGCTTCATACCACAAAGCATTTTATGGGGCGGTGCCTCTTAACCTTTTTGTTCAATTCTGCAGGAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAAATTTGCGATCCAAGCTTTTGATTTTGGCACCAATTAGTGTCACGCCGGTGGTTTGACTAAGTTTTACAACTTGAGAATCAGTAGGGTAACCGTTGGAAGGAAGATCTTCTTTCTTTC--TTTTTTTTAGGAATCACAAAACCGGTTTAGGCTTCTTTTAGTGCATTTAATTTAGGCTTCTTTCACTGATCGCATCGAGTATAATTTTAAGTGGGGATGATTGATTATTCCTCATATGAATTA</genome_strand>
        <mrna_strand>AAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAAATTTGCGATCCAAGCTTTTGATTTTGGCACCAATTAGTGTCACGCCGGTGGTTTGACTAAGTTTTACAACTTGAGAATCAGTAGGGTAACCGTTGGAAGGAAGATCTTCTTTCTTTCTTTTTTTTTTAGGAATCACAAAACCGGTTTAGGCTTCTTTTAGTGCATTTAATTTAGGCTTCTTTCACTGATCGCATCGAGTATAATTTTAAGTGGGGATGATTGATTATTCCTCATATGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289377" ref_strand="+" ref_description="SGN-E289377 [cLET-3-C9]">
      <seq>accaacgacgatgatttacgacgtgaattcgccgcttttccgatccttcctcagccagaagggaggcgcatctgacaagaggaaaaccgaagagcagaagcccaaggaacagaggccaaaagcaagtgaaaacaaacctgttatgaatgagtgaaagctgccagatgtttaacttattttagcatatctggaatgttgttaagcaactcttttacaagatgtggaatatgtactgaatttgacatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70587" stop="72802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70887" g_stop="70967" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72334" g_stop="72510" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="258" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E289377" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70887" e_stop="70967"/>
          <exon e_start="72334" e_stop="72510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAGGTACATATGAATTCTCTCGCTAACCGTAAATTCATCATCGCTCAATGTTTTATGCTCATTATGCAATGTTTTCCGATTTGTTGTTCAGGAGGTATTATGAATTTATGATTTATGCTGTAGGTTAGACTTATTAGGGTTACATTCTCAAATTCATAGCCTAACCTAACACGTTAAGTTTAATAGTTTGTGAGGTGGATTTTGCCTGCTTGCGGAAGAAGATTCTTAATTACTAGTCTGTTAGATTTTCTTTCACATTATCTGCGACACATTGCATGCCCGATATCTTTGTTCGTTTCCGTTTAGGTGTGTTCTGGGCTTTGAATAGATTTTATATAGAAAGTTCTCGATTAGCTCTTCTCTATTGTGAGCTTTGTATAAACTTGTCAATTTGTTCTGCTCTATTGTACAACGGCGATGAGTTATGTTGGGTTTGACTATTAAATGTGTTTGATAGGAAATTGTGTGAATGCTTTTATATTATGGTCATGCTTCGTCAATACACTTTCTTGTCACGGCTGATTGTTTGTGTAAGACTGAAATTTGGATTCAGTTTCAGAAATAATTCGATTAGGAAACATGTTGACTTTTGGCTTTTCCTATGCTTTGCTCAGTAGGTATTTAATGTTATAGAGAAACCAAAGCAACCTCAGCCGTAATGATGAGATATTTTCCTCTAGATGTCATGTTTCTGTTCACGCAGCATCTCAGGTTGTCTTGTAGTATACATGTATCTTGCCAAAAAAATGTTTTCCAATGTTATTATGGCTTAATACAATCTCTAATGATTCTTGTTATGAAGCTGCTTCCGTAAGAAAACATCTTTTAGGAAAGCACTGAACTTTGCACTTCAGATCCATCAGAATCAGCTACTTGTGGCAAGTAGCTGTTTAGTTAACTGAACATTCAGATTAGAGTCTCTAATATTGTTTAGAGATCTTGAAATTGGGTTTAAAGCTCTGTTGCTCTTCAAAAATATCTCCAGGTGTGTCAGTCCTCCGAAAGCTATGTACTATTGGAGGGTCAGACACGTGTGCCAACATTTTTGGAGACATCGAGTAACATGGGTTTTAAGTACACTAAGGGGTCATTGTCATTTGGTATTGTCTTGGGATAACGTAACTCATCATGTATATGCTATAAGTTATCCCAAACATGATAACCAAACAAGACATCTAAATTTTATTCCAGGACTATTTATTATTCTTATCCCTCACACCAAACGAGAACATTCCTGTTCCTTTATCTACTGTAGTTTTCGGTCCACTTGTGTGGTTGTGTTCCTTTGTTGTCGTGTCAACAGCTGCGCTTCATACCACAAAGCATTTTATGGGGCGGTGCCTCTTAACCTTTTTGTTCAATTCTGCAGGAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCAT</genome_strand>
        <mrna_strand>ACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354844" ref_strand="+" ref_description="SGN-E354844 [cTOS-19-J19]">
      <seq>tagactggactgaggtacacacaaaacatcaagggttgctccttcgcagcttgtcattccttcagcatgcctttgaaacaacaacttatagacaaagctcgttgtgcctgagggtatcacattgggatgagaaggtgaacttccagattttgggagcgaagagggtggtcagctcaaattttgtgttgtgtatagtatttgttgccctagagcctcagtaaggtaggaacagatgtagaggtaggtgtacagggtctctctcttctcttagctcttttaaattacagctcatttttcttaaatcccctttccacctgctcaccaagggagggcctatttgattttgtccccgtagtcatcccatgtattatagccctttttatattcaatggggtagtttatcatttttatggcctaaggctgtggaaagtcttgtaaatattagaggcatgtgtatgctccatatttgtcaatacagtcatcatttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79963" stop="78668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79663" g_stop="79573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79572" i_stop="79368" i_length="205">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79367" g_stop="78968" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="491" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E354844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79663" e_stop="79573"/>
          <exon e_start="79367" e_stop="78968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACTGGACTGAGGTACACACAAAACATCAAGGGTTGCTCCTTCGCAGCTTGTCATTCCTTCAGCATGCCTTTGAAACAACAACTTATAGGTAAAAAGAAATAAAATTGATGTCAACTGCTATAATACAACCTGCTATTAGATCCCAGTAAGACAAGTTGAAATTATTGACATACTTCTACAATATTTAGATTTAATATTCTTGGTTGAGATAATTTAGGCTCTTGATTAGTTATATTTTCAGTATGTCATGATATTGGTATAAGTTGTTGATTCTTGCTCAATTTGTTTTTCAGACAAAGCTCGTTGTGCCTGAGGGTATCACATTGGGATGAGAAGGTGAACTTCCAGATTTTGGGAGCGAAGAGGGTGGTCAGCTCAAATTTTGTGTTGTGTATAGTATTTGTTGCCCTAGAGCCTCAGTAAGGTAGGAACAGATGTAGAGGTAGGTGTACAGGGTCTCTCTCTTCTCTTAGCTCTTTTAAATTACAGCTCATTTTTCTTAAATCCCCTTTCCACCTGCTCACCAAGGGAGGGCCTATTTGATTTTGTCCCCGTAGTCATCCCATGTATTATAGCCCTTTTTATATTCAATGGGGTAGTTTATCATTTTTATGGCCTAAGGCTGTGGAAAGTCTTGTAAATATTAGAGGCATGTGTATGCTCCATATTTGTCAATACAGTCATCATTTATGA</genome_strand>
        <mrna_strand>TAGACTGGACTGAGGTACACACAAAACATCAAGGGTTGCTCCTTCGCAGCTTGTCATTCCTTCAGCATGCCTTTGAAACAACAACTTATAG.............................................................................................................................................................................................................ACAAAGCTCGTTGTGCCTGAGGGTATCACATTGGGATGAGAAGGTGAACTTCCAGATTTTGGGAGCGAAGAGGGTGGTCAGCTCAAATTTTGTGTTGTGTATAGTATTTGTTGCCCTAGAGCCTCAGTAAGGTAGGAACAGATGTAGAGGTAGGTGTACAGGGTCTCTCTCTTCTCTTAGCTCTTTTAAATTACAGCTCATTTTTCTTAAATCCCCTTTCCACCTGCTCACCAAGGGAGGGCCTATTTGATTTTGTCCCCGTAGTCATCCCATGTATTATAGCCCTTTTTATATTCAATGGGGTAGTTTATCATTTTTATGGCCTAAGGCTGTGGAAAGTCTTGTAAATATTAGAGGCATGTGTATGCTCCATATTTGTCAATACAGTCATCATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264736" ref_strand="+" ref_description="SGN-E264736 [cLEG-71-K23]">
      <seq>aaattcctcctaattctgacagtaccaatcaagctcttgcctcattgagtgtattgggtcctaatttgccccaccaatctgttccaacctcagtttccggttcttccaaccaccggatgttgatgcatccacagcaacaggtgcaattgcggccaaagttgactcctcaaagtcaagcagctcttcaaggtgttctgcaacggaaacgttcactgaattctgaaccgtcaaacaagttgcaagctggtgaacttaaaagtgaacagcgcaatatttgcaacacttcacagataggtaaaacgtctcttcagggctccaacaatttaactaatgctgcagaggtatctgccgccggtgctactcaaatgaaggttgcagttccgtcattagattcaattggaaacccaccaataaattctgctgccagcgagacagggacagaagtcaaccaaggagtaagccaaatgcaatccttctggtaagttgtctcctattgggcgtgatgctggtgttaaatggaagcaaaagtcttcagagttgcatcctccctcgctagtgaacagccccagttacaccagcaacaacagcagcggccgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80633" stop="79433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80333" g_stop="79733" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E264736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80333" e_stop="79733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCTCCTAATTCTGACAGTACCAATCAAGCTCTTGCCTCATTGAGTGTATTGGGTCCTAATTTGCCCCACCAATCTGTTCCAACCTCAGTTTCCGGTTCTTCCAACCACCGGATGTTGATGCATCCACAGCAACAGGTGCAATTGCGGCCAAAGTTGACTCCTCAAAGTCAAGCAGCTCTTCAAGGTGTTCTGCAACGGAAACGTTCACTGAATTCTGAACCGTCAAACAAGTTGCAAGCTGGTGAACTTAAAAGTGAACAGCGCAATATTTGCAACACTTCACAGATAGGTAAAACGTCTCTTCAGGGCTCCAACAATTTAACTAATGCTGCAGAGGTATCTGCCGCCGGTGCTACTCAAATGAAGGTTGCAGTTCCGTCATTAGATTCAATTGGAAACCCACCAATAAATTCTGCTGCCAGCGAGACAGGGACAGAAGTCAACCAAGGAGTAAGCCAAATGCAAT-CTTCTGGTAAGTTGTCTCCTATTGGGCGTGATGCTGGTGTTAAATGGAAGCAAAAGTCTTCAGAGTTGCATCCTCCCTCGCTAGTGAACCAGCCCCAGTTACACCAGCAACAACAGCAGCGGCCGCTATT</genome_strand>
        <mrna_strand>AAATTCCTCCTAATTCTGACAGTACCAATCAAGCTCTTGCCTCATTGAGTGTATTGGGTCCTAATTTGCCCCACCAATCTGTTCCAACCTCAGTTTCCGGTTCTTCCAACCACCGGATGTTGATGCATCCACAGCAACAGGTGCAATTGCGGCCAAAGTTGACTCCTCAAAGTCAAGCAGCTCTTCAAGGTGTTCTGCAACGGAAACGTTCACTGAATTCTGAACCGTCAAACAAGTTGCAAGCTGGTGAACTTAAAAGTGAACAGCGCAATATTTGCAACACTTCACAGATAGGTAAAACGTCTCTTCAGGGCTCCAACAATTTAACTAATGCTGCAGAGGTATCTGCCGCCGGTGCTACTCAAATGAAGGTTGCAGTTCCGTCATTAGATTCAATTGGAAACCCACCAATAAATTCTGCTGCCAGCGAGACAGGGACAGAAGTCAACCAAGGAGTAAGCCAAATGCAATCCTTCTGGTAAGTTGTCTCCTATTGGGCGTGATGCTGGTGTTAAATGGAAGCAAAAGTCTTCAGAGTTGCATCCTCCCTCGCTAGTGAA-CAGCCCCAGTTACACCAGCAACAACAGCAGCGGCCGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264737" ref_strand="+" ref_description="SGN-E264737 [cLEG-71-M23]">
      <seq>caaattcctcctaattctgacagtaccaatcaagctcttgcctcattgagtgtattgggtcctaatttgccccaccaatctgttccaacctcagtttccggttcttccaaccaccggatgttgatgcatccacagcaacaggtgcaattgcggccaaagttgactcctcaaagtcaagcagctcttcaaggtgttctgcaacggaaacgttcactgaattctgaaccgtcaaacaagttgcaagctggtgaacttaaaagtgaacaacgcaatatttgcaacacttcacagataggtaaaacgtctcttcagggctccaacaatttaactaatgctgcagaggtatctgccgccggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80634" stop="79676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80334" g_stop="79976" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E264737" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80334" e_stop="79976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCCTCCTAATTCTGACAGTACCAATCAAGCTCTTGCCTCATTGAGTGTATTGGGTCCTAATTTGCCCCACCAATCTGTTCCAACCTCAGTTTCCGGTTCTTCCAACCACCGGATGTTGATGCATCCACAGCAACAGGTGCAATTGCGGCCAAAGTTGACTCCTCAAAGTCAAGCAGCTCTTCAAGGTGTTCTGCAACGGAAACGTTCACTGAATTCTGAACCGTCAAACAAGTTGCAAGCTGGTGAACTTAAAAGTGAACAGCGCAATATTTGCAACACTTCACAGATAGGTAAAACGTCTCTTCAGGGCTCCAACAATTTAACTAATGCTGCAGAGGTATCTGCCGCCGGTGC</genome_strand>
        <mrna_strand>CAAATTCCTCCTAATTCTGACAGTACCAATCAAGCTCTTGCCTCATTGAGTGTATTGGGTCCTAATTTGCCCCACCAATCTGTTCCAACCTCAGTTTCCGGTTCTTCCAACCACCGGATGTTGATGCATCCACAGCAACAGGTGCAATTGCGGCCAAAGTTGACTCCTCAAAGTCAAGCAGCTCTTCAAGGTGTTCTGCAACGGAAACGTTCACTGAATTCTGAACCGTCAAACAAGTTGCAAGCTGGTGAACTTAAAAGTGAACAACGCAATATTTGCAACACTTCACAGATAGGTAAAACGTCTCTTCAGGGCTCCAACAATTTAACTAATGCTGCAGAGGTATCTGCCGCCGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393039" ref_strand="+" ref_description="SGN-E393039 [TUS-37-D2](-)">
      <seq>attcttgggaggatccacccaggtactgatgatgttttgttgtctgcaacagggaaggacgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgcccccgcaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttatttggatcttgtcacttcctcgatgggtaaatttcgtaggtggtcatataactaatagctttattgcatcaaattcgaaggaaaaatttgttacatgaacaacatcaaaacaaccaaacataattgaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86171" stop="84612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85871" g_stop="85822" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85451" g_stop="84908" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="595" r_length="543" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E393039" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85871" e_stop="85822"/>
          <exon e_start="85451" e_stop="84908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTT-GGAGGAT-CACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAAGGAAAAATTTGTTACATGAACAACATCAAAACAACCAAACATAATTGGAAATAGATAACTTA</genome_strand>
        <mrna_strand>ATTCTTGGGAGGATCCACCCAGGTACTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGCCCCCGCAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAAGGAAAAATTTGTTACATGAACAACATCAAAACAACCAAACATAATT-GAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345127" ref_strand="+" ref_description="SGN-E345127 [cTOF-22-N19]">
      <seq>tcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgcttttatttggatcttgtcacttcctcgatgggtaaatttcgtaggtggtcatataactaatagctttattgcatcaaattcgagggaaaaatttgttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87283" stop="84652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86983" g_stop="86826" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="225" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="84952" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="726" r_length="501" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E345127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86983" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="84952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGC-TTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAAGGAAAAATTTGTTACATG</genome_strand>
        <mrna_strand>TCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAGGGAAAAATTTGTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308721" ref_strand="+" ref_description="SGN-E308721 [cLEZ-11-G24]">
      <seq>ggaaagaggggtgaatgggatagggtgtggctgatctcttcttgtgtatgatgtgacaaaattcttggaggatcacccacgtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaaacagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttaggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctatcacaacaaatgaaatcaacgagacgttacaagaacaattagctacctttttctctgttcccatttttaactttttcatcttggtgttatatatatcaatctacgcctcctgaacttgctttatttggatcttgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86826" stop="84734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86526" g_stop="86484" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86483" i_stop="85889" i_length="595">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="110" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85034" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="528" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E308721" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86526" e_stop="86484"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATCTTGTCAC</genome_strand>
        <mrna_strand>GGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCACGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAACAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTAGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATCACAACAAATGAAATCAACGAGACGTTACAAGAACAATTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGGTGTTATATATATCAATCTACGCCTCCTGAACTTGCTTTATTTGGATCTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241507" ref_strand="+" ref_description="SGN-E241507 [cLED-28-L19]">
      <seq>ttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttggtggtatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87237" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86937" g_stop="86826" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="179" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85041" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="590" r_length="411" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E241507" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86937" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATC</genome_strand>
        <mrna_strand>TTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGGTGGTATATATATCAATCTACGCCTCGTGAACTTGCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202848" ref_strand="+" ref_description="SGN-E202848 [cLEB-1-K20]">
      <seq>gcacgagcccaacaaccccttcctcctattctacaatttacaaacaatcatcaatacactcctccctcttcaagccctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87357" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87062" g_stop="86826" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="304" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85050" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="706" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="721"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E202848" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87062" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAACCCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</genome_strand>
        <mrna_strand>GCACGAGCCCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350149" ref_strand="-" ref_description="SGN-E350149 [cTOS-4-G17]">
      <seq>agctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87183" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86883" g_stop="86826" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="125" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85050" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="527" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E350149" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86883" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</genome_strand>
        <mrna_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350317" ref_strand="-" ref_description="SGN-E350317 [cTOS-5-G13]">
      <seq>agctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87183" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86883" g_stop="86826" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="125" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85050" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="527" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E350317" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350317" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86883" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</genome_strand>
        <mrna_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350529" ref_strand="-" ref_description="SGN-E350529 [cTOS-5-E18]">
      <seq>agctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87183" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86883" g_stop="86826" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="125" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85050" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="527" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E350529" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86883" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</genome_strand>
        <mrna_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350845" ref_strand="-" ref_description="SGN-E350845 [cTOS-7-M3]">
      <seq>agctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87183" stop="84749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86883" g_stop="86826" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="125" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85050" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="527" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E350845" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350845" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86883" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</genome_strand>
        <mrna_strand>AGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353369" ref_strand="+" ref_description="SGN-E353369 [cTOS-15-M10]">
      <seq>gctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttgggaggtgctgttggcctccgcttctacaccaaacagtcaacttcttgaagattgaataatcggtgatgctataacaacaaatgaaatcaacgagacgttacaagaacagttagctacctttttctctgttcccatttttaactttttcatcttggtgttatatatatcaatctacgcctcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87182" stop="84758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86882" g_stop="86826" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="124" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85058" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="518" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="534"/>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E353369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86882" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAA</genome_strand>
        <mrna_strand>GCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGGTGTTATATATATCAATCTACGCCTCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337269" ref_strand="+" ref_description="SGN-E337269 [cTOE-7-F13]">
      <seq>cctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcattaagatcctccagttcttggttcctttgattattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87287" stop="84941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86987" g_stop="86826" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="229" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85241" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="440" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E337269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86987" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGG</genome_strand>
        <mrna_strand>CCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203018" ref_strand="+" ref_description="SGN-E203018 [cLEB-1-J20]">
      <seq>gcacgagcccaacaaccccttcctcctattctacaatttacaaaccatcatcaatacactcctccctcttcaagccctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttgtataacaaaacagaatttgtcaataaatgggtaaagtctgcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattatcagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttgtgttgtctgcaacagggaaggatgcaactgatgactttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacatgtgttaagtacactcctgcaaagcagcctgattacaaccaggacaaaacatcagagttcatcattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87357" stop="84976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87062" g_stop="86826" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="304" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85276" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="480" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E203018" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87062" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAACCCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAG</genome_strand>
        <mrna_strand>GCACGAGCCCAACAACCCCTTCCTCCTATTCTACAATTTACAAACCATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTGTATAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTGCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATCAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTGTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGACTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACATGTGTTAAGTACACTCCTGCAAAGCAGCCTGATTACAACCAGGACAAAACATCAGAGTTCATCATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279758" ref_strand="+" ref_description="SGN-E279758 [cLER-8-C17]">
      <seq>ttacaaacaatcatcaatacactcctccctcttcaagccctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtctgcaacagggaaggatgcaactgatgattttgaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattatgtaggagaaatcgattcttcaaccatcccaacaagtgtaaagtacactcctccaaagcagcctcattacaaccaggacaaaacaacagagttcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87325" stop="84980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87025" g_stop="86826" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="267" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85280" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="439" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E279758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87025" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCAT</genome_strand>
        <mrna_strand>TTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277873" ref_strand="-" ref_description="SGN-E277873 [cLEL-5-B21](-)">
      <seq>gcacgagcaacaaccccttcctcctattctacaatttacaaacaatcatcaatacactcctccctcttcaagccctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgttgatgtttntgttgtctgcaacagggaaggatgcaactgatgattttgaaggatgtcggacacagcagtagtgctcgagcaatgttggacgagtattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87353" stop="85078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87054" g_stop="86826" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="235" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85822" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="303" r_length="68" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85451" g_stop="85378" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="378" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E277873" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277873" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87054" e_stop="86826"/>
          <exon e_start="85888" e_stop="85822"/>
          <exon e_start="85451" e_stop="85378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTT-TGTTGTCTGCAACAGGTAAATATAGTTAGACGTATTCTTCTCGCAGAAGAACATCATTGCATGTTGTATTCAATTTTTTGTAATCTTACATACATATGCACCAATATATGTTTGTATGTCAAAGTTCACTCGAACATCCAGATGAGCCATCTCTGAAATGCCAGACAATTTGAATACGAATAAAACTATGTAATATTGTAGCAGTACCTGAATTTTACTCACTCTGTATTTTCGTATTCAATTTTTAGTAATTACAAATATGCACCAATGTATGTGTGTGTGTAAAGTTCAGTTGAACGTTGCTGACTGCCAGATTGTGCCATCTCTGAGATGCAAGACAAATTCGATTGTGTTTATGGGGGCTCGTGATGGTTGTTGTATGCAGGGAAGGATGCAACTGATGATTTTG-AGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTAT</genome_strand>
        <mrna_strand>GCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGTTGATGTTTNTGTTGTCTGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................GGAAGGATGCAACTGATGATTTTGAAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393040" ref_strand="+" ref_description="SGN-E393040 [TUS-37-D2]">
      <seq>caatacactcctccctcttcaagccctttcttatatagggtcttgaagagccaaaatcaacatctgattattctttctgttttctaacaaaacagaatttgtcaataaatgggtaaagtcttcaatttagctgaggtctcccagcacaacaatgccaaggattgttggctcattattagtggcaaggtgtatgatgtgacaaaattcttggaggatcacccaggtggtgatgatgttttgttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87311" stop="85529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87011" g_stop="86826" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85888" g_stop="85829" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="246" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E393040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87011" e_stop="86826"/>
          <exon e_start="85888" e_stop="85829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAGGTATAAAATTTTCTATCTCATTTGTGCTAATTAAAGCTTTCTTCTTTTGATGTTATTTTAAGTTGGTTAGCTACATTTTGTGCTTTCCATTGTGAGATCTGTGAAAAGATCCAATCTTTATTACTAATTTGTAAAAAAGATTCAATCTTGGTTCACCCACTGTTAGGCCCATTTGGTTTGACTAAAACTCGAGATCTTTAGTTAAAAATGGAGGAGTCCCACGAATGTACCAATAACTCATGTTGGTTTTATTTTTATTTCTACCCTCCTACTTCCCCCCTGCATTTTGTTTGGTTTTGGGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTTGTATGGTATTATCCTCTTGTTTTGTTGATTGAATATTTGTAAATGAAAAATGTTGCTTCTTTTAAATTTTGTGAGTCCCTAAGTTTAGCCGCTATGTTGCTTCAACTCTTCAAAAATGTTGTAGCACCGTGTCAAATCCTTCTAAAATGCATTACTTTTTGGAGGATCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCACCGCCTCCATTCCTTTTTGGTTTAGTTTTGGAAGTGATGTTAGTAGCACTTGCTTTTGGATGAACTTCTTTTGTTATAATTATATCAAATGTGTTCAACAGTTGACAGTATAAACCTCCTTTTCCTTTCCAGTATCTTTAGTTTTTTCATATGTCGCGTGTTATTTGAACAGGTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCT</genome_strand>
        <mrna_strand>CAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238313" ref_strand="+" ref_description="SGN-E238313 [cLED-17-I13]">
      <seq>tccgatgtgcacctggtgacatatgttgtagggtgtgtctactatgtttccaaattttgtttacatgcttgactcctcattctctacatcattgtccacttacctttttgctccaaaagaatgttttccttcacatcaaacacatttgagaaaatcagtgatagctagtttagaaggttggtttcaaatcttataatttctgttaatttaaaaagactaatcaagtagctagcatcacctgtcatcgacttggatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86617" stop="85760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86317" g_stop="86060" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E238313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86317" e_stop="86060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCAC</genome_strand>
        <mrna_strand>TCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92778" stop="91655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92478" g_stop="91954" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="558" r_length="524" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92478" e_stop="91954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCTAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTAAAAAATGTCCCTTAAAACGTATAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTTAGAGACTGGATTTCCACTGAAGGCTCTGTGACGGTCCGTTACACATGTGACGGTCCGTCCTGCCATTTCATTACGAAGTTCAGAGAGTCGATTTTCAGTACCTAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAACCTATTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACAGGTCGTTACAATA</genome_strand>
        <mrna_strand>TTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92778" stop="91667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92478" g_stop="91967" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="545" r_length="511" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92478" e_stop="91967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCTAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTAAAAAATGTCCCTTAAAACGTATAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTTAGAGACTGGATTTCCACTGAAGGCTCTGTGACGGTCCGTTACACATGTGACGGTCCGTCCTGCCATTTCATTACGAAGTTCAGAGAGTCGATTTTCAGTACCTAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAACCTATTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92778" stop="91740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92478" g_stop="92040" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="472" r_length="438" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92478" e_stop="92040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCTAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTAAAAAATGTCCCTTAAAACGTATAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTTAGAGACTGGATTTCCACTGAAGGCTCTGTGACGGTCCGTTACACATGTGACGGTCCGTCCTGCCATTTCATTACGAAGTTCAGAGAGTCGATTTTCAGTACCTAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGA</genome_strand>
        <mrna_strand>TTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110484" stop="92261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110184" g_stop="109903" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109902" i_stop="93000" i_length="16903">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92999" g_stop="92561" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="717" r_length="435" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110184" e_stop="109903"/>
          <exon e_start="92999" e_stop="92561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGGTTTGTGACAC-CCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCTCCTAAATCTACGTGTCGGTTCGTGACACCCGATCTCCTAAATCTACGTGTCGGTTCATGACACCCGATCCTCTAAATCTACGTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATATTATTTTATATTTAATAAATAATTTATACCTTACTTGTTTCAAAGCATAAATTTTTTCTAAATATCTTTTTATTTTTTAAGTTTCGTATCTAAACAGAATCAAAGGATGTTGTTTTTTTCCCTTCTTTTTTTTTAAGTCAGCAACTTCATCCGACTCCAACTAATTTCTCTCTCTATATATATATATATTTCTTAATTTTATTTTATTTTTTTAAAATTATTTTTTGACATTTTTCACGTGCAGTTTCAGAATATTGGTTTATATATATAATATATAATTTAATTTATTTAAGTGTAATTGCTGACCAGTATAATGAATTTTGGAATTGTAATTCAAACTCTAATACCAACATCATGATTCATGCATATGATACTTATCATACGTCTTGCATTTAATTAAAGGTTAAGAATTGTTATCACTCACGTAAATTAAACTTTAACAATGCAAGATTGAAAAATAGCTCCAAGAATCTTTTTTAGAAAATTTATGCATATGTATATGTTTTACAATTAAATAATAGATTTTTTAAGAGAAAAATATAGATAGTGAAATAAATTTTTTTAATTTAATAGATTTTTTTTCGTGTAACGAATTTATTTTGTTAATTTCCTAGCCTATATTTTTCTATCGATCAAAGATGGTTCATTTTGGAAATCACTAACCGCAGACATTATATCTTATTTGTGTATATTAACATGATATATCTAAACACATTTATACTGTCGATATATATCTAAAATTTAAACCGTTATAGAAATTAAATGCTCACCCAATTCCATAAGTGCCTCCAGTGACAAGAGCCACCAAACGATTAAGTGACCATCTGGATCCTCCAACCTTTGCCATTGTGTAATTTATTTTGTCTAGCTAATTGATTATTAAAAAAAAAAATATTTGCAAGTATATAGTAGTATTGTTTTCATAAAGAAGATACAGTATGTGACCTATAAATAGTACAATTTTAAAGTTGGTGGCCTTCAATTATTTAACGAATCATTTTCCAAACATAAGAAAATAAATCTAAAATTTATTTGTTTTTCAAAAAAATATTTTCTAAAAAAACATTTTCATAAAAGATATTTTTCTCCATACCAAACACACCCTTAGTGTGTGATTTTTCATTCCATATATGTATATATATATTAAAAAACACGGTTTTTAAGGAGATAAAGTTTATAAGTTGCCTTCAAACATATAATACAAATTAAACAACGCAAAGTGGGCGGTAAAAATGAGTGGATTTTTCGTAGTTCAAAAAAATGACTTGGTTTAATTTGACGTGAAATTTAAAAAAATAAAGAAATTTTTTAAATTTTGTAGTTTTAAAATAAAGTTATGTGAAATGTACAAAATTATATTTTTAATCTTGTAGCCTTAAACATGTCACTTAGAAATTTGAAATTAAAATATTATTAAAAAAAGATTATTCTTTTGAAATTAAAATATTATTAAAAAAGTTTTTTTTTAAATAGACTAAAAATAAAAAAAATATTTTTTTTTAAAACGGGGGGAGAAAGTATTGCTTTGTACTTTGTATATCACTAAACTTAGTGGATAAATATTTGGAAACCTTTTTAATTTGCACGCACTTTCATTCTTTTAAAAAAATGTAGAAATATGTTTGGCATGTTCAAAATCATAATTTCTAATAAAAGTTAATTTTTGGTACGTGGGTACCAAAATTATTTTTAACAAACATAAAACGTTTTGCTCAATCAAATACTATTAGTCATAAAAAAGAAAAAAAATAATATTTAATATATCGACATGATTATTACACAGAATATAATAACGATAATAATAAAATACTCAAAATGAACTTACAAATAGAATCTCGAGAAGACAGTGAATAGTGAGTAAACTACAATGCGAAAATAAGGAAAAAGGATCATCTCATAAACCCTCAATTCAAACAAAACACACCAAACATGCTCAAATTAAATACAACATTATTACAAAAGTACTAGTAGGTAGCTAGAAATTCTATGCTACCATATTCAAACAAGCCCAATTTGTTCGAGCTAAAAAAGTAATATCACTCGATCATTATTATCAAATTCATTGCAATTTTTTTTTTGTCGGACTAGTAATAGTTAATAGCCAGGCTGTTGGAAGCCATAAACAGTGAATCCTCCATCAACTGCAATAACTTGACCGGTAACATAGGAAGCAGCAGGAAGACAAAGATAAGCTACCATTGATGAAACTTCTTCAACTTCTCCAGGACGCTTAAGAGGAGTTCTTGATACTACCCCTTCCAGAAATTCTTTATCTCCCAGCACCTGTCAATACAAAGCCATCAAAAGGGTCAAATTTGTCTTTTTACTATCGAAAAAAGAATCATATATATGCCCGTCGTTATATTATTCATTACAAAAAAAGTCGCTCAGATATACCCTATCTACTAATATTATATTAGTTCTATTAATATTTTAATGAAATCATGAACACCTCATGACATGTCATCATATTGTCCCAACCCCCTCCACTTTTTTGTCCACCACTACAACACCATGACCACCACAGCCATGATAATGGAAGGATTAATTTAATTGTTGATAGGTTCGAGTTTAATATTCCACAGTAACATAGTAATATTAATTTATTGGATTAGAAAACTATTATTTAAATATATATAGTTAATTTCTTAAAGCTATTGATAGAGTCATTAAAATGGCTTAGTCCATCGGTGGACCTAACGCAATAAGTTATTAGGATAGAATTGAGATAAGATTTTTCAAGTTCATTTAAGACTAGGACTTATAAGCTCCTAGATCGAGATCGGATCGGGATCAACCCATGGACCAAAACTATTTATTTAAGGATAACTTATATCAATCTCGCTGGTATATGATAAAATTACTTAAAGGAACGGTATATTGTATCTCGGGATATATGAACTCAAAATTAGATTAATTAATTTTGCTCCGGATTCACATGTATCTACAATACATAGACAAATTTCGCACCCTCGATCGCCTCCTTCCCATCTTGCTTGCCCTCTCTTATCTCACTCACGTATTTGAGATACATCACACCGAATACATGCATTTTATCTCGCATATCTAGTATCCAGGATACATTCTAATTACACTAAATTTTTGCTAGTGTTATTGAAATAACACCATTGTTTGCCATATTTTATTTGAAATCTTTTCATTTTCTTGACATTATAGAATTTTCAGTTTGAAAAGAAAAACAATGGGAAAAAAGGGCTACCTGGCCCTCCCTTTGCCATTCTAAGATTGGATTAGGTTAAGTATTTTCAAACTCTTTTAAATGAAGGGCCAGCCCATGCTTTGCCTTCATCTTTCTTGGCCCGCGAGGCATGGCCAGTGTGGGACTGAATCGGCCCTTTTTGATAACTCTAGGTATTGAGTTCTATATCCCACCTTTATGTTTGTACCCTATACTAATTTTTCTTTTCCTTATTTATGTAAATAATTAAAAATAAATTTATTAATTTATACTATGCACTAAAAGAATTTTACATATTTGAAAGATATAATTAAGTTGAGAGAAATATTACTTGTTCGACGAGGGGAGTGTTAATGAACCAGGGTGCAACCCCATTAACACGAATTCCATCTTTTGCCCATTCACAAGCCAAATTTCGTGTAAGTTGATTCATTGCTCCTGTCATTATAAGTTAATAATAAAATAAATAAATATAAAGTCGAGCTTGAATCGTTGATCGTAAATAGCTGATAAGTTCTAAGTGTTGAAAATTATTTTTTAAATATTGAAATTGTTTGTATAAATAAATAGTTACTTGTTTAGACACAAGTATCAAAAGTGTTAATAAGTAGTTGATGTGTCTTGTTAAAAAATGTTAATTACTGTACTTAAGTATTTTGTAAACATTATAAATAAATTTAAAAGTATTCGAGCATAGAAAAGGAGGAACAACAAATATATAATATCGTAAATTTAAAAAAATATTAAGGATAAAATAATAAAATATTTAGTCCAATCAAAAGTGTTTATAAGCGGAAAATCTTTTATGATCAACTTACAACTTCGTCTTATAAACACTTTATTTATTGTATATCAAACAAGTAATAAGCTAAAATATGTTGACTAGTCAGTTGGATCAATCAACTTATATATAAGCTTAACCAATTACGTATCGTGACAAAGCTAAGATTTTAAGAAGAGGGTTCAAACTTTGGAGAAGTACAACATATGAACTAATTGAAGAGGGTTCGACATATATTTGAAGGGAATTCAGATGAATCCTAACAGTATGCTGGCTCCGCCCCTTAATACGTACCTTAGTTGTATATTACTCACTATTTAATAGAGCTGTCAATATGGGATAGCCCACCCCATCCGGGCTAACCTATACAGGCTTTGACATTTTACCGGTCAGGCCGGGCTAGCCCATTTTTGGCGTGGGCCAGAATATGGTCGGTCCAACCCATAAGTAAGTGGCCTACAGGTTTGACAGGCCAACCCACTTTTTAAAAAAAATTATATATTTTTATAATAAATAGAGATAATTTCAGAGACCTCCATGTTTCGCTCTATAACATTCACCTCCCCTTTGGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTAATTGTAACCATTCTTTAAACCTATTTAAAATAAATATAAATTAATATAGATTTGACAATTTTACTCTTTTATATATAAATTTCTTCTTAGTAATAAATATTATATAAAAAATAACTCATTTAACAAAATACTTTTAAAATAGTTAACATAAAGATTTATTTTTTTAATCCAACAAAAATCAAAGTCTTCAACTAAGCTGACCCACATTTTCACCAAATATTAACTTTTTATCTCTATTTCACTTTTAAAAATTCACGTAAATTTTTTCTCCACAATAATCCATCATTTTCCGGCAAAAATTTCTTCAAATAGAAGACAAAATTGAACTTCCCAAGAAAGAAATTCGATAAGAACGATAAGATTTTGTTCTAGTTAAACATTTAAACAAGCGAAAAAGAAACATGATCCAACGAATAAAGATAAATCATTGAAAATTAGATCTAAACATTCATATATAAGGGTAAATTTGTCAAATTTATATTAATTTATATTTATTTTAAATAGGCTTAAAGAATGGTTACAAGTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACTAAAGGGGAGGTGAGTGTTATAGAGCGAAACATGGAGGTCTCTCAAAATTATCTATATTTATTAAGTTTTTTTCAAGTAAAAGTATAAATATATAAATAAAAATATTAACCTAATTATTTTGAATTTGGACTCTCTTTAATTTTAAATTTTAATATTATATTATATTTTTTAATTAATTATTATTGGCCAACGAGCCGGCTCTACCTATATTTTTCAAGCCCATTAAATCAACAGGCTTATTCATGCCGGGCTAAAAAGTCATTTTCTTAAATGTGTTCCAAAAATCTTAGCCCAACCCTATTAAATCTCGAATTAGGCACGCCGGTCCAACGGACCTAGTCCATATTAACGATTCTACTATTTAAGGATAGATGAGTACCTTTTGTTGCTCCATAAATAGAAGTGCCAGATAGGTGGACAAGACCAGCAACAGAAGACAAGAATACAATACTTCCAACTCCAGATGATTTAAGAAGAGGATTAGCAAGTTGACTCAAATGGAATGAAGATTCTAAATTTGTAGCCATCATATGTGCATAATCTTCACCAGTATATTCAGTAGTAGGCTTCCAAATGTTTGTTCCAACATTGTTTATCTACAACAACAATATAACATAATAAGGCAATATATATGTCCATCCATGTATTAGTATAAACGTAACATCGTCATACTTTGTCCATCCATGTATTAGTATAAACGTAACGTCGTCATACTTTCCTTTTTAGTATCATGTACTTGGTAATTCTAATATTTTACTTGCACGACATGTTTAAAGTTACGAGATATATGGAATTATTAGTTCTTACAAGAATGTTGAGTTTTCCATCAAATTCCAAGGAAACTTTTTCCATGAGTTGTACTCTTTGCTCTTTAGATGATACATCACATACACAACCTTTTACTTGAAGGCCTTTATCTGTCCACTTTTTCAAACATTCATTGAGGATTGATTCATTCCTTGAACATGTATACACTTTTGCACCAAGTTCACAAAGCTCCTCCACAATTGCATGCCTAAAAAAAAAACATGTATATCAATCAGGTTCCTGTTATTCGTATCTGTTCTGAATTGACTATTTAACGTCCAGTGAAGGAATTGAAGGCTCTCACGATTGAGACCCCATGTCCTTTGCCCTCGATCAAAAGTAATTCTTTTTCTAAAGTTACGGATCCATTTTATTATTATTTTTCTTGCTTATAACATTATGATGATCATCATCCTAAGGTTGCTATCTTGAAGACCTAATGTGATCTTTGACATGATAAATTACATAAATGTACACTAACATGGTATCTAGACATGTAATTACAACAAAATAAGTCATCTGATAGTATAAACATTATATGTATATATAGAAGTTAAATTCGAAAAAAAATGCGATAAGATAAGAAGGGTAACCCAATTCCATAAGTGCCTCCAGTTACAAGAGCAACCAAACCAGTAAGTGACCATCTGGATCCTCCAACCTTTGCCATATTGTGTGTTTCTTTTGTATAGCTAATTGATTATTCAAGAGATTGATTGAAACTATATTACAAAAATACTAATTGCTTAATTACAAAAATAAGCTACCTAAGTGGCCTATAAATACTACTACTTATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTCCTAAATCTACGTAACGGTTCGTGACACCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAATCTCCTTCTATCAATCCATCAAGCCTTCTTTCTTGCCAAGGCATCATCAATCTCATTGTTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATCATTAACAGAGAAATTAGGGTTTTGTAAGATTTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTACATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCATAAGAGAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGCTTTCTTCTTCTTCTCTCCCTGTTCGTTCATTTTCTCCCTCTCTTGTGTTTTCAAATTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCTTAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACGTATAAAGAAACGACCCAGACTGGGATTACGCAACCTACGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGAAGGCTCTGTGACGGTCCGTCACACATGTGACGGTCCATCCTGCCATTTCGTTACGAAGTTTAGAGAGTCGATTTTCAATACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGGGGTCCGTCGCCTCAGCATGTTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACTGGTCGTTACATTAAGACTATGGCTTATAAGCCCCTTGATCGAGATTGGATCGGGGTCAGTCCACAGGCCAAAATTATTTATTTAAGGGTAACTTATATCAATTTCGCTAGTATATGATAAGCTAATTACTTAAAGGAACGGCATGTTCTATCTCGGGATACATAAATTCAAAAATTAGTTTGATTAATTTGCTCTAGATATATTCTATCTAAGTGCCGGATTCACATGTATCTACGATATATAGACAAATTTTGCACCCTCGATCGCCTCCTTCCCATCTTGCTCGCCCTCTCTTATCTCACTCGCGTATCTGAGATACATCACACTAGATACATGCATCTCATCTCGCATATCTAGTATGCATGATACACTCTAATTACACTAGATTTTTGCTACTGTTATTGAAATAACACCATTGTTTGCCATATTTGATTTGAAATCTTTTCATTTTCTTGAAGTTATAAAATTTTCAGTTTGAAAAGAAAAAATAATAATAAAAAAAGGCTAGTTGGCCCTCCCTTTGCCCTTCTAAGTTTGTTAGGTTAAACATTTTCAAACTCTTTCAAATTAAGGGCCGGCCCACGCTTATCCTTCATCTTTCTTGGCCCGCGAGGCATGGGTAGTGTGGAACTGGATCGGCCCTTTTTGACAACTTTAGGTATTGAGGTCTATATCCACCTTTATGTTTGTACCCTATACTAATTTTTCTTTTCCTTATTTATGTAAATATTTAAAAATAAATTAAATAATTTATACTATGCACTAAAAGAATTGTACATATTTGAAAGATATAATTAAGTTGAGAGAAATATTACTTGTTCGACGAGGGGAGTGTTAATGAACCAGGGTGCAACCCCATTAACACGAATTCCATCTGTTGCCCATTCACAAGCCAAATTTCTTGTAAGCTGATTCATTGCTCCTGTCATCATAATATAATAATAAAATTAATAAATATAAAGTAAAGCTGGAATCGTTGATCGTAAATAGCTGATAAGTTCTAAGTGTTGAAAATTATTTTTTAAATATTGAAATTGTTTGTATAAATAAATAGTTACTTGTTTGGACATAAGTATCGAAAGTGTTAATAAGTAGTTGATGTGTCTTGTTAAAAAATATTTATTACTATACTTAAGTATTTTGTAAACATTATAAATAAATTTAATAGTATTCGAGCATACAAAAGGAGGAACAACAAATATATATATCGTAAATTTTAAAAAATATTAAGGATAAAATAATAATATATTTAGTCTAACCAAAAGTGTTTTATAAACGAAAAATCTTTTATGATCAACTTACAACCTTTATTGTTTATCAAACAAGTAATAAGCTAAAATATGTTGACTAGTCAGTTGGATCAATCAACTTATATATAAGCTTAGTCAATTACGTATCGTGATAAAGCTAAGATTTTAAGAAGAGGGTTCAAACTTTGGAGAAGTACAACATACGAACTAATTGAAGAGGGTTCGACATATACTTAAAGGGAGTTCAGATGAACCCTAACATGCTGGCTCCGTCCCTTAATACGTACCTTAGTTGTATATTACTCACTATTTAAGGATAGATGAGTACCTTTTGTTGCTCCAAAAATAGAAGTACCAGATAGGTGGACAAGACCAGCAACAGAAGACAAGAAAACAATACTTCCAGCTCCAGATGATTTAAGAAGAGGATGAGCAAGTTGACTCAAATGGAATGAAGATTCTAAATTTGTAGCCATCATATGTGCATAATCTTCACCAGTATATTCAGTAGTGGGCTTCCAAATGTTTGTTCCAACATTGTTTATCTGCAACAACAATATAACATAATAAGGCAATATATATGTCCATCCATGTATTAGTATAAACGTAACGTCGTCATACTTTCCTTTTTAATATCATGTACTTGGTAATTTTAATATTATACTTACATGACATGTTTAAAGTTACGGATATATGGAATTATTAGTTCTTACAAGAATGTTGAGTTTTCCATCAAATTCCAAGGAAACTTTTTCCATGAGTTGTACTCTTTGCTCTTTAGATGATACATCACATACACAACCTTTTACTTGAAGGCCTTTATCTGTCCACTTTTTCAAACATTCATTGAGGATTGATTCATTCCTTGAACATGTATACACTTTTGCACCAAGTTCACAAAACTCCTCCACAATTGCATGCCTAAAAAAAACATGTATATCAATCAGGTTCCTGTTATTCGTATCTGTTCTGAATTGACTATTTAACGTCCAGTGAAGGAATTGAAGGCTCTCACGATTGAGACCCCATGTCCTTTGCCCTCGATCAAAAGTAATTCTTTTTCTAAAGTTACGGATCCATTTTATTATTATTTTTCTTGCTTATAACATTATGATGATCATCATCCTAAGGTTGCTATCTTGAAGACCTAATGTGATCTTTGACATGATAAATTACATAAATGTACACTAACATGGTATCTAGACATGTAATTACAACAAAATAAGTCATCTGATAGTATAAACATTATATGTATATATAGAAGTTAAATTCGAAAAAAAATGCGATAAGATAAGAAGGGTAACCCAATTCCATAAGTGCCTCCAGTTACAAGAGCAACCAAACCAGTAAGTGACCATCTGGATCCTCCAACCTTTGCCATATTGTGTGTTTCTTTTGTATAGCTAATTGATTATTCAAGAGATTGATTGAAACTATATTACAAAAATACTAATTGCTTAATTACAAAAATAAGCTACCTAAGTGGCCTATAAATACTACTACTTATAAGCTTAATTATCTGGTCTAGTCATATCCTTATTGACAGTTACAATAATTATGACTTTATTCCTAACAGTCAAAGATGTTTGCTAGACATTTTTTTATATATATATCTACATACATATATATATATATATATATATATAATGCAATATTCTCTATTTATTGTATGACATTTGTGGTGACTGGTTACGTTGTAAATTGAGCATTTTTAAGTTATTAAGTAATTATATAAGTACTATTGAGATGAACTATGTTGATGGTAAAGATATTTTTAGATTATATATATAGAGAGAGAAAGTGTATTTTAATTTCATTTAATTTAACGATATATTCAATAATGCAATAAAAATTTGAGTTTTCTCCATCAGAGCTATTTTAAAACTATTTTATTCAAATTAAAAATCTAGTAGAGTAAAATAAATTTTTATGAGATAAGAATAGTACAATGTTTGTATTCTATCTTTTTATAATAACTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTGCGTCTTCAACATCTCATGACTAGTACGTAGCAGCTCTTTTTTTCACTTTTTAAGAAGAGCAGGCTCAGTTAAGCACCTCGACACCCTTCTTGACTGAGATCAAGAAGTTTGATCCTACCGTGGAAATCTTTTATCGTTTCATTTCTTGGTGAGATTGATGTAACAGATCTTAGATCCATACTTTCCTGTTGTTGACGCTTGAATCAGAGAGTTATCCTTCTTTCAGTGTTACTGGTCTTTTATTCTCGTAAAATAATGTTTCTGAATCATGATTTTGGATAATGAAAAAGCAATATGGATGTAATAACTAGTGATAAAATTGGTATTCTGAAGTTAAATCTTCAGTACAATATCGCTTGTCTAACATATTACAACACTAAAGATGAGCATATGCTAACATGTTTACATCAAGACTTCTATTCGAACAACAACAAGTAAAGACTTTTATTCAAACAACAACAAGTATAACTTAATAGCCAGGCTGTTGGAAGCCATAGACTGTGAATCCTCCGTCAACTGCAATAATCTGTCCAGTGACATAGGAAGCACCAGGAAGACAGAGATATGCGATGAGAGATGAAACTTCTTCCACTTCTCCTGAACGCCCAAGAGGAACTCTTGATATTAAGGCATCCGAAAATTCTTTATCCTTGAGCAACTGTCAATACAGAACCACCAAATTCATCGATCACAGTTTTTAAAGACAAATTTGTACATGCACATACAACATTTAAGTCAGGTGGAGCATTTTTGAACCAAAACTATTAACAGTTTGACATTTTTTGCCTACATTGAATCCATTTTTGCACTGATGCATAAAGACTCGTATATTATCAGAGACAGAATCAACAAGAGGAGAATATTACATGTTTCACGAGGGGTGTGTTTGTGTAACATGGTGCAACCGCATTAACACGAATACCATCTCTTCCCCATTCACAAGCCAGATTTCGTGTAAGCTGAATCATTCCCGCTGCCATCAGATAATATATTGATTGGTATGGTAAAAGACTTAGTCGCACCTAATGTTTAAACTAAAAGCACGAGTAGAGTACCTTTTGTTGCTCCGTAAATAGAAGTACCAGAGACATGGACAAGACCAGCAACAGAGGCAGTGAAAACAATACTTCCAGATCCAGATGATTTAAGAAGAGGATGAGCAAGTTGACTGAAATGGAATGAAGATTCTAAATTTGTAGCCATCATGTGTGCATAATCTTCAGCATTATAATCAATAGAGTGTTTCCAAATGTTTGTTCCAACATTGTTTATCTACATCAACATCACAAGGCAATAGTCAATTTGGGAAAAAAAAACTATACTGAATGAACATCAAGTGTTGGATCTATCAATTTCACATTGGAGCAGCTCTTTCTAACTTCTGCCTAATTATTCAAAGAATCAGAAAATTGTCTGCCCGCCTAGAAGAGCAAACTTCATCTTTTCATTAATTTTGACGATTGGATCTCTCTTTTTGAATACAACATCTATTGAAAACGTCTAATATCCAAGCAACTTAGGCCAAAAGACTCTACAAATCCACATTGACAAGGGCGGATCCAGTGCTTCGGCTCGACTAATAATTAAGAAAATGGAATTATGTATGGTACTCACAAGAATGTTAAGTTTTCCATCAAATTCAGAGGAAACTTTTTTCATGAGCTCAACTCTTTGGTCTCTACAAGTAACATCACATGCTGAGCCTTTCACTTGTATGCCTCTCTCTGCCCAATCTTGCATTGGCTCATCAAGCTCTGACTCTGTCTTGCAACATGTGTACACTTTTGCACCAAGTCCAGCTAGCTCCTCTACAACTGCATGACTAGTTAAAAAAAAATATACAATCGTATTAAAGATTTAACTTATATGCACCAACAACAAGTCAACTTAATCGTCGATATTAAAATTTAAAATGTATAGTACCCAATTCCACTAGTGCCACCAGTGACGAGAGCAGCCAAACCATCAAGTGACCATCTACAACTTTTGGCAAAAGCTGCAACTTTAGCCATTTGAGTTCTACTTTTTTTTTCTTGCTGTGTGCTATTGCTTCGAAGACATTGTGTATGTATATATAACGATGCTTGATTAATAATTGCTTTAAAAAAAATATATTATATAAAGTAGTTCGTACAGCCAATACATACATTTTTTTTAAAAAAAAAATCTGAACCTTACTAACTCTCACGTGTAGATTTTTGAGGATCGTGTTATATGTAACTAAAACCATGTGGAAGATGACAATATAATATCCTATCCCATCTCATACAAGATATTTTGTCAATTATATAAATTTCTGCCTACAAATGAATGGCTTAGTTTGAGAGTTTAGGAAAATAAATTAGATTATGAATTATATTTCATTGTGATTTTAAATTAGAATTATGTAAAAAGCTAAAATTAAGTAGCAAGTAAATGCTCGAACTAGCTCCTAAGATTTTCTATTAAAATGAAGGGATCTTGTTTATTCTATCATATGATCTTTATTTAGAGTGTGTTTGGTATGAAGGAAAATATTTTTTAATTTTCTCATGTTTGGTTGGGATAAAATCTTGGAAAATGTTTTTCCAAATTAACTTATTTTTCTCAAAATTAAGGAAAATGATCCCGTTTCAAAAATTAAGGAAAACATTTTCCAAAACTCTCCTCAAATTTCAAATTACCCTTTTTTGGGGGAAAAACATTAATTTTAAAAAAATATTTTCATTTTTAAAATTTTATTTTTCATTCGATCCTTGAATGCCCCACCCGCCCACCACCGGCCAGCCCCCCAATTCCGGCCCCTCACCAAAAAATTAATTTTGCTTTTCAAAATATTTTCAACTTCAAATTTTTATTTTTAAACTCCTATCCCCCTTCCCACTAAAAAATTAATTTTGTTTTTTTTTTAAAATACTATCAACTTTAAATTTTTATTTTTTCACTCATATCCCTTCTCCCGTGCCCCCATCCACTACCCTCACCCCCCCCCCCACCACCATCACCCTAAAAAAATAATAATTTTACTTTTAGAAAATATTTTCAATTTCATAAATTATTTTTTGCTCTAATAAAAATAAAAAATATTTCTCGAAAATACTTTTTATTCATAAATTAAGCACTAAAAATTATTTCTGAAAAAATATTTTTCTAATTACCAATCAAACATGAAAAAATAAATCTAAAATCTACTTATTTTCCAGAAAAATATTTTCCATGAAAAATATTTTCCTCTCTAACCGACACACCCTTAGCGTCGATGATTTTTCATGCCATATTTGTATATATATAAAAACACGATTTTTGAGGAGATAAAGTTCATAAGTCGCCTTTAAACATATCAATACAAAATAAACAACGCATGGTGGGTGGTAAAAATGAGTGGATTTTTTTGTGCATACTCTGTTTTAAAAAATGACTTCGTTTAATTTTATGTGAAATAAAAAAAAAATTAAATTTTATAGTTTTAAATTAAAGTTATGTGAAATATATAAAATTATATTTTTAATTTTATAGTCATGTCACATAAAAATTTAAAATTAAAATACAATTAAAAGAATTATTTTTTTTTGAAACAAATTAAAAATAAAAATAATCATTTAAAAAGCGGAGGAGAAAGTATTGCTTTGTACTTTGTATATCACTAAACTTAGTGGATAAATATTTGGAAACCTTTTTTATTTGCACGCACTTCCGTTCTTTTAAAAATATGTAGAAGTATGTTTGGCATGTTCAAAATCATAATTTCTGATAAAAGTCAACTTTTGGTACGTAGGTACCAAATTCATTTTTAACAAACATAAAACGTTTTGCTCAATCAAATACTATTAGTCATAAAAAGGAAAAAAAGGATAATATTTAATATATCAACATGATTACTATACGGAACATAATAACAATAATAATAATAAAATATTCAAAATGATCTTACAAATAGAGTCTTGAGAAGACATTGAATAGTGAGTAAACTACAGTGTGAAGATAAGGAAAAGGGATCATCTCATAAACCCTCAATTCAAAAAAAACACACCAAACATGAGCAAATTAAATACAACATTATTACAAAAGTACTAGTAGGTAGCTAGAAATTCTATGCTACCATATTCAAACAAGCCCGATTTGTTAGAGTTAAAGAAGTAATATCACTCGATCATTATTATCAAACTGATTGCAATTTCTTGTTTTTGTCGGACTATTAAACATTAATAGCCAGGCTGTTGGAAGCCATAGACAGTGAATCCTCCATCAACTGCAATAACTTGACCAGTAACATAGGAAGCAGAAGGAAGACAAAGATAAGCTACCATTAATGAAACTTCTTCAACTTCTCCAGGACGCTTAAGAGTAGTTCTTGATATTACCCCTTCCAGAAATTCTTTATCTCCCAGCACCTGTCAATACAGAGCCATCAAAAGGGTCAAATTTGTCTTTTTACTATCGAAAAAAGGATCTTATATATACCCTTTGTTATACTACTCATTACAAAAAGTCGCTAAGATATACCCTTTCTACTAATTATATTAGGTCTATTAATATTTTGATGAAATCATGAACACCACATGACATGTCATCATATTGTCCCAACCCCCTCCACTTTTTTGTCCACCACTACAACACCATGACCACCACTGCCATGATAATGGAGGGATTAATTTAATTGTTGATAGGTTCGAGTTGTTTAATATTCCACAGTAACATGGTAATATTAATTTATTGGATTCGAAAACTATTACTTAGATATATTTAGTTAATTTCTTAAAGCTATCGATAGAGTCATCAAAATGGGTTTAGTTCATCGGTCGACCCAACAAAATAAGTTACTAGGATAGGATTGGGATAAGATTTTTCAAGTTCATTTAAGTGTTACGACCCAAAATCGATCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCATCATAAAATAATGCGGAAGACTTAAACTCATTAATAAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATGATCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGAATTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCTTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTTCCAAGGCATCATCAATCTCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATCATTAACAGAGAAATTAGGGTTTTGTAAGATTTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTACATAATTACATTCATGCAAGCATACAACTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACTGAAGACTA</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTCATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGGTTCGTGACACCCGATCCCCT-AATCTATGTGTTGGTTCGTGACACCTGAT-CCCTTAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGA-TTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92261" stop="93264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92561" g_stop="92965" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92561" e_stop="92965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAGTTGTATGCTTGCATGAATGTAATTATGTAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAAATCTTACAAAACCCTAATTTCTCTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGAAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCC-AAATCTTGTAAAAACCTAATCTCT-TTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543072" ref_strand="+" ref_description="SGN-E543072 [TUS-64-L5]">
      <seq>cttgtagagaccaaagagttgagctcatgaaaaaagtttcctctgaatttgatggaaaacttaacattcttataaacaatgttggaacaaacatttggaaacactctattgattataatgctgaagattatgcacacatgatggctacaaatttagaatcttcattccatttcagtcaacttgctcatcctcttcttaaatcatctggatctggaagtattgttttcactgcctctgttgctggtcttgtccatgtctctggtacttctatttacggagcaacaaaagcgggaatgattcagcttacacgaaatctggcttgtgaatggggaagagatggtattcgtgttaatgcggttgcaccatgttacacaaacacacccctcgtgaaacatttgctcaaggataaagaattttcggatgccttaatatcaagagttcctcttgggcgttcaggagaagtggaagaagttcatctctcatcgcatatctctgtcttcctggtgcttcctatgtcactggacagattattgcagttgacggaggattcacagtctattgcttccaacagcctggctataaagtatacttgttggtgtttgaataaaagtctttacttggttgttgttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96616" stop="98480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96916" g_stop="96986" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96987" i_stop="97328" i_length="342">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97329" g_stop="97545" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="288" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97546" i_stop="97627" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97628" g_stop="97734" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="395" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97735" i_stop="97942" i_length="208">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97943" g_stop="98180" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="632" r_length="237" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E543072" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96916" e_stop="96986"/>
          <exon e_start="97329" e_stop="97545"/>
          <exon e_start="97628" e_stop="97734"/>
          <exon e_start="97943" e_stop="98180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAGAGACCAAAGAGTTGAGCTCATGAAAAAAGTTTCCTCTGAATTTGATGGAAAACTTAACATTCTTGTGAGTACCATACATAATTCCATTTTCTTAATTATTAGTCGAGCCGAAGCACTGGATCCGCCCTTGTCAATGTGGATTTGTAGAGTCTTTTGGCCTAAGTTGCTTGGATATTAGACGTTTTCAATAGATGTTGTATTCAAAAAGAGAGATCCAATCGTCAAAATTAATGAAAAGATGAAGTTTGCTCTTCTAGGCGGGCAGACAATTTTCTGATTCTTTGAATAATTAGGCAGAAGTTAGAAAGAGCTGCTCCAATGTGAAATTGATAGATCCAACACTTGATGTTCATTCAGTATAGTTTTTTTTTCCCAAATTGACTATTGCCTTGTGATGTTGATGTAGATAAACAATGTTGGAACAAACATTTGGAAACACTCTATTGATTATAATGCTGAAGATTATGCACACATGATGGCTACAAATTTAGAATCTTCATTCCATTTCAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGATCTGGAAGTATTGTTTTCACTGCCTCTGTTGCTGGTCTTGTCCATGTCTCTGGTACTTCTATTTACGGAGCAACAAAAGGTACTCTACTCGTGCTTTTAGTTTAAACATTAGGTGCGACTAAGTCTTTTACCATACCAATCAATATATTATCTGATGGCAGCGGGAATGATTCAGCTTACACGAAATCTGGCTTGTGAATGGGGAAGAGATGGTATTCGTGTTAATGCGGTTGCACCATGTTACACAAACACACCCCTCGTGAAACATGTAATATTCTCCTCTTGTTGATTCTGTCTCTGATAATATACGAGTCTTTATGCATCAGTGCAAAAATGGATTCAATGTAGGCAAAAAATGTCAAACTGTTAATAGTTTTGGTTCAAAAATGCTCCACCTGACTTAAATGTTGTATGTGCATGTACAAATTTGTCTTTAAAAACTGTGATCGATGAATTTGGTGGTTCTGTATTGACAGTTGCTCAAGGATAAAGAATTTTCGGATGCCTTAATATCAAGAGTTCCTCTTGGGCGTTCAGGAGAAGTGGAAGAAGTTTCATCTCTCATCGCATATCTCTGTCTTCCTGGTGCTTCCTATGTCACTGGACAGATTATTGCAGTTGACGGAGGATTCACAGTCTATGGCTTCCAACAGCCTGGCTATTAAGTTATACTTGTTGTTGTTTGAATAAAAGTCTTTACTT-GTTGTTGTTCGA</genome_strand>
        <mrna_strand>CTTGTAGAGACCAAAGAGTTGAGCTCATGAAAAAAGTTTCCTCTGAATTTGATGGAAAACTTAACATTCTT......................................................................................................................................................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAACACTCTATTGATTATAATGCTGAAGATTATGCACACATGATGGCTACAAATTTAGAATCTTCATTCCATTTCAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGATCTGGAAGTATTGTTTTCACTGCCTCTGTTGCTGGTCTTGTCCATGTCTCTGGTACTTCTATTTACGGAGCAACAAAAG..................................................................................CGGGAATGATTCAGCTTACACGAAATCTGGCTTGTGAATGGGGAAGAGATGGTATTCGTGTTAATGCGGTTGCACCATGTTACACAAACACACCCCTCGTGAAACAT................................................................................................................................................................................................................TTGCTCAAGGATAAAGAATTTTCGGATGCCTTAATATCAAGAGTTCCTCTTGGGCGTTCAGGAGAAGTGGAAGAAG-TTCATCTCTCATCGCATATCTCTGTCTTCCTGGTGCTTCCTATGTCACTGGACAGATTATTGCAGTTGACGGAGGATTCACAGTCTATTGCTTCCAACAGCCTGGCTATAAAG-TATACTTGTTGGTGTTTGAATAAAAGTCTTTACTTGGTTGTTGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303337" ref_strand="+" ref_description="SGN-E303337 [cLEX-2-C22]">
      <seq>ttgtagagaccaaagagttgagctcatgaaaaaagtttcctctgaatttgatggaaaacttaacattcttataaacaatgttggaacaaacatttggaaacactctattgattataatgctgaagattatgcacacatgatggctacaaatttagaatcttcattccatttcagtcaacttgctcatcctcttcttaaatcatctggatctggaagtattgttttcactgcctctgttgctggtcttgtccatgtctctggtacttctatttacggagcaacaaaagcgggaatgattcagcttacacgaaatctggcttgtgaatggggaagagatggtattcgtgttaatgcggttgcaccatgttacacaaacacacccctcgtgaaacatttgctcaaggataaagaattttcggatgccttaatatcaagagttcctcttgggcgttcaggagaagtggaagaagtttcatctctcatcgcatatctctgtcttcctggtgcttcctatgtcactggacagattattgcagttgacggaggattcacagtctatggcttccaacagcctggctattaagttatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96617" stop="98440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96917" g_stop="96986" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96987" i_stop="97328" i_length="342">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97329" g_stop="97545" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="287" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97546" i_stop="97627" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97628" g_stop="97734" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="394" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97735" i_stop="97942" i_length="208">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97943" g_stop="98140" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="592" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E303337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96917" e_stop="96986"/>
          <exon e_start="97329" e_stop="97545"/>
          <exon e_start="97628" e_stop="97734"/>
          <exon e_start="97943" e_stop="98140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGAGACCAAAGAGTTGAGCTCATGAAAAAAGTTTCCTCTGAATTTGATGGAAAACTTAACATTCTTGTGAGTACCATACATAATTCCATTTTCTTAATTATTAGTCGAGCCGAAGCACTGGATCCGCCCTTGTCAATGTGGATTTGTAGAGTCTTTTGGCCTAAGTTGCTTGGATATTAGACGTTTTCAATAGATGTTGTATTCAAAAAGAGAGATCCAATCGTCAAAATTAATGAAAAGATGAAGTTTGCTCTTCTAGGCGGGCAGACAATTTTCTGATTCTTTGAATAATTAGGCAGAAGTTAGAAAGAGCTGCTCCAATGTGAAATTGATAGATCCAACACTTGATGTTCATTCAGTATAGTTTTTTTTTCCCAAATTGACTATTGCCTTGTGATGTTGATGTAGATAAACAATGTTGGAACAAACATTTGGAAACACTCTATTGATTATAATGCTGAAGATTATGCACACATGATGGCTACAAATTTAGAATCTTCATTCCATTTCAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGATCTGGAAGTATTGTTTTCACTGCCTCTGTTGCTGGTCTTGTCCATGTCTCTGGTACTTCTATTTACGGAGCAACAAAAGGTACTCTACTCGTGCTTTTAGTTTAAACATTAGGTGCGACTAAGTCTTTTACCATACCAATCAATATATTATCTGATGGCAGCGGGAATGATTCAGCTTACACGAAATCTGGCTTGTGAATGGGGAAGAGATGGTATTCGTGTTAATGCGGTTGCACCATGTTACACAAACACACCCCTCGTGAAACATGTAATATTCTCCTCTTGTTGATTCTGTCTCTGATAATATACGAGTCTTTATGCATCAGTGCAAAAATGGATTCAATGTAGGCAAAAAATGTCAAACTGTTAATAGTTTTGGTTCAAAAATGCTCCACCTGACTTAAATGTTGTATGTGCATGTACAAATTTGTCTTTAAAAACTGTGATCGATGAATTTGGTGGTTCTGTATTGACAGTTGCTCAAGGATAAAGAATTTTCGGATGCCTTAATATCAAGAGTTCCTCTTGGGCGTTCAGGAGAAGTGGAAGAAGTTTCATCTCTCATCGCATATCTCTGTCTTCCTGGTGCTTCCTATGTCACTGGACAGATTATTGCAGTTGACGGAGGATTCACAGTCTATGGCTTCCAACAGCCTGGCTATTAAGTTATACTT</genome_strand>
        <mrna_strand>TTGTAGAGACCAAAGAGTTGAGCTCATGAAAAAAGTTTCCTCTGAATTTGATGGAAAACTTAACATTCTT......................................................................................................................................................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAACACTCTATTGATTATAATGCTGAAGATTATGCACACATGATGGCTACAAATTTAGAATCTTCATTCCATTTCAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGATCTGGAAGTATTGTTTTCACTGCCTCTGTTGCTGGTCTTGTCCATGTCTCTGGTACTTCTATTTACGGAGCAACAAAAG..................................................................................CGGGAATGATTCAGCTTACACGAAATCTGGCTTGTGAATGGGGAAGAGATGGTATTCGTGTTAATGCGGTTGCACCATGTTACACAAACACACCCCTCGTGAAACAT................................................................................................................................................................................................................TTGCTCAAGGATAAAGAATTTTCGGATGCCTTAATATCAAGAGTTCCTCTTGGGCGTTCAGGAGAAGTGGAAGAAGTTTCATCTCTCATCGCATATCTCTGTCTTCCTGGTGCTTCCTATGTCACTGGACAGATTATTGCAGTTGACGGAGGATTCACAGTCTATGGCTTCCAACAGCCTGGCTATTAAGTTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340350" ref_strand="+" ref_description="SGN-E340350 [cTOF-2-F13]">
      <seq>aagggccaccaacttaaatattgtattatttataggtcacatattgtatcttctttatgaaaataatactactatatacttgcaatctttttattttttttgaacaatcaattagctagacaaaataaattacacaatggcaaaggttggaggatccagatggtcacttaatcgtttggtggctcttgtcactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctggttcattaacactcccctcgtcgaacaagtgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98967" stop="106562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103021" g_stop="103239" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.775"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="421" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="638" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="745" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E340350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103021" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNAAGCTTATAAGTAGTAGTATTTATAGGCCACTTA-GGTAGCTTATTTTTGTAATTAA-GCAATTAGTATTTTTGTAATATAGTTTCAATCAATCTCTTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA</genome_strand>
        <mrna_strand>AAGGGCCACCAA-CTTAAATATTGTATTATTTATAGGTCACATATTGTATCTTCTTTATGAAAATAATACTACTA-TATACTTGCAATCT-TTTT--AT--TTTTTTTGAACAATCAATTAGCTAGACAAAATAAA-TTACACAATGGCAAAGGTTGGAGGATCCAGATGGTCACTTAATCGTTTGGTGGCTCTTGTCACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266389" ref_strand="+" ref_description="SGN-E266389 [cLEI-3-I18]">
      <seq>tttatttttttttgaacaatcaattagctagacaaaataaattacacaatggcaaaggttggaggatccagatggtcacttaatcgtttggtggctcttgtcactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98967" stop="106480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103113" g_stop="103239" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="333" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="550" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106180" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="577" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E266389" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103113" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAATCTCTTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATT</genome_strand>
        <mrna_strand>TTTAT-TTTTTTTTGAACAATCAATTAGCTAGACAAAATAAA-TTACACAATGGCAAAGGTTGGAGGATCCAGATGGTCACTTAATCGTTTGGTGGCTCTTGTCACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537684" ref_strand="+" ref_description="SGN-E537684 [TUS-56-G15]">
      <seq>ttttttttgaacaatcaattagctagacaaaataaattacacaatggcaaacgttggaggatccagatggtcacttaatcgtttggtggctcttgtcactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctggttcattaacactcccctcgtcgaacaagtgctgggagataaagaatttctggaangggtagtatcaagaactcctcttaagcgtcctggagaagttgaagaagtttcatcaatggtagcttatctttgtcttcctgctgcttcctatgttaccggtcaagttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98967" stop="107946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103119" g_stop="103239" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="328" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="545" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="652" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106261" i_stop="107507" i_length="1247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107508" g_stop="107646" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="791" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E537684" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103119" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
          <exon e_start="107508" e_stop="107646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAAGTAATATTTCTCTCAACTTAATTATATCTTTCAAATATGTAAAATTCTTTTAGTGCATAGTATAAATTAATAAATTTATTTTTAATTATTTACATAAATAAGGAAAAGAAAAATTAGTATAGGGTACAAACATAAAGGTGGGATATAGAACTCAATACCTAGAGTTATCAAAAAGGGCCGATTCAGTCCCACACTGGCCATGCCTCGCGGGCCAAGAAAGATGAAGGCAAAGCATGGGCTGGCCCTTCATTTAAAAGAGTTTGAAAATACTTAACCTAATCCAATCTTAGAATGGCAAAGGGAGGGCCAGGTAGCCCTTTTTTCCCATTGTTTTTCTTTTCAAACTGAAAATTCTATAATGTCAAGAAAATGAAAAGATTTCAAATAAAATATGGCAAACAATGGTGTTATTTCAATAACACTAGCAAAAATTTAGTGTAATTAGAATGTATCCTGGATACTAGATATGCGAGATAAAATGCATGTATTCGGTGTGATGTATCTCAAATACGTGAGTGAGATAAGAGAGGGCAAGCAAGATGGGAAGGAGGCGATCGAGGGTGCGAAATTTGTCTATGTATTGTAGATACATGTGAATCCGGAGCAAAATTAATTAATCTAATTTTGAGTTCATATATCCCGAGATACAATATACCGTTCCTTTAAGTAATTTTATCATATACCAGCGAGATTGATATAAGTTATCCTTAAATAAATAGTTTTGGTCCATGGGTTGATCCCGATCCGATCTCGATCTAGGAGCTTATAAGTCCTAGTCTTAAATGAACTTGAAAAATCTTATCTCAATTCTATCCTAATAACTTATTGCGTTAGGTCCACCGATGGACTAAGCCATTTTAATGACTCTATCAATAGCTTTAAGAAATTAACTATATATATTTAAATAATAGTTTTCTAATCCAATAAATTAATATTACTATGTTACTGTGGAATATTAAACTCGAACCTATCAACAATTAAATTAATCCTTCCATTATCATGGCTGTGGTGGTCATGGTGTTGTAGTGGTGGACAAAAAAGTGGAGGGGGTTGGGACAATATGATGACATGTCATGAGGTGTTCATGATTTCATTAAAATATTAATAGAACTAATATAATATTAGTAGATAGGGTATATCTGAGCGACTTTTTTTGTAATGAATAATATAACGACGGGCATATATATGATTCTTTTTTCGATAGTAAAAAGACAAATTTGACCCTTTTGATGGCTTTGTATTGACAGGTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTATCTTTGTCTTCCTGCTGCTTCCTATGTTACCGGTCAAGTTATTG</genome_strand>
        <mrna_strand>TTTTTTTTGAACAATCAATTAGCTAGACAAAATAAA-TTACACAATGGCAAACGTTGGAGGATCCAGATGGTCACTTAATCGTTTGGTGGCTCTTGTCACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGAGATAAAGAATTTCTGGAANGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTATCTTTGTCTTCCTGCTGCTTCCTATGTTACCGGTCAAGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265935" ref_strand="+" ref_description="SGN-E265935 [cLEI-6-G23]">
      <seq>tttttttcaacaatcaattagctcgacaaaataaattacacactggcaaaggttggaggatccacatggtcacttaatcgtttggtggctcttgtcactggaggcacttatggaattgggcatgcaattgtggaggagctttgtaaacttggtgcaaaagtgtatacatgttccaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaacgttgtgtatgtgatgtatcatctaaagagcaaagagtgcaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttatatacaatgttggaacaaacattaggaagcctactactgaagatactggcgaagattatgcgcatatgatggctacaaatttagaatctacattccatttgagtcaacttgctcatcctgttcttaaatcatctggagttggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99004" stop="104490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103120" g_stop="103239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="327" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104190" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="474" r_length="147" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E265935" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103120" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGT</genome_strand>
        <mrna_strand>TTTTTTTCAACAATCAATTAGCTCGACAAAATAAA-TTACACACTGGCAAAGGTTGGAGGATCCACATGGTCACTTAATCGTTTGGTGGCTCTTGTCACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTAAACTTGGTGCAAAAGTGTATACATGTTCCAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAACGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTGCAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATATACAATGTTGGAACAAACATTAGGAAGCCTACTACTGAAGATACTGGCGAAGATTATGCGCATATGATGGCTACAAATTTAGAATCTACATTCCATTTGAGTCAACTTGCTCATCCTGTTCTTAAATCATCTGGAGTTGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265465" ref_strand="+" ref_description="SGN-E265465 [cLEI-9-H6]">
      <seq>ttgaataatcaattagctatacaaaagaaacacacaatatggcaaaggttggaggatccagatggtcacttactggtttggttgctcttgtaactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaacgagcaatgaatcaacttacacgaaatttggcttgtgaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98971" stop="106496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103125" g_stop="103239" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="323" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="540" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106196" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="583" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E265465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103125" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGC</genome_strand>
        <mrna_strand>TTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256499" ref_strand="+" ref_description="SGN-E256499 [cLEG-38-D18]">
      <seq>aataatcaattagctatacaaaagaaacacacaatatggcaaaggttggaggatccagatggtcacttactggtttggttgctcttgtaactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctaatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98974" stop="106499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103128" g_stop="103239" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="320" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="537" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106199" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="583" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E256499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103128" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAA</genome_strand>
        <mrna_strand>AATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265799" ref_strand="+" ref_description="SGN-E265799 [cLEI-11-C15]">
      <seq>aaaggttggaggatccagatggtcacttaatcgtttggtggctcttgtcactggaggcactgatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagatcaaggccttcaagtaaaaggttgcgtatgtgatgtatcatctaaagagcaaaaagtacatctcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatgctattcttaaatcatctggagttggaagtatagtattcttgccttctgttgctggtcttgtccacctatctggcacttctatttatggagcatcaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcgaaagatggaattcctgttaatggggttgcaccctggttcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99014" stop="106541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103168" g_stop="103239" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="280" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="497" r_length="217" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106154" g_stop="106241" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="585" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E265799" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103168" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAA</genome_strand>
        <mrna_strand>AAAGGTTGGAGGATCCAGATGGTCACTTAATCGTTTGGTGGCTCTTGTCACTGGAGGCACTGATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATCAAGGCCTTCAAGTAAAAGGTTGCGTATGTGATGTATCATCTAAAGAGCAAAAAGTACATCTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATGCTATTCTTAAATCATCTGGAGTTGGAAGTATAGTATTCTTGCCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCATCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCGAAAGATGGAATTCCTGTTAATGGGGTTGCACCCTGGTTCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267561" ref_strand="+" ref_description="SGN-E267561 [cLEI-8-G2]">
      <seq>ggtcacttactggtttggttgctcttgtaactggaggcacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaaaattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctctttttaaatcatctggagttggaagtattgtattcttggcttctgttgctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99034" stop="104518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103188" g_stop="103239" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="260" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104044" g_stop="104218" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="435" r_length="175" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E267561" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103188" e_stop="103239"/>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGGGTTACCCTTCTTATCTTATCGCATTTTTTTTCGAATTTAACTTCTATATATACATATAATGTTTATACTATCAGATGACTTATTTTGTTGTAATTACATGTCTAGATACCATGTTAGTGTACATTTATGTAATTTATCATGTCAAAGATCACATTAGGTCTTCAAGATAGCAACCTTAGGATGATGATCATCATAATGTTATAAGCAAGAAAAATAATAATAAAATGGATCCGTAACTTTAGAAAAAGAATTACTTTTGATCGAGGGCAAAGGACATGGGGTCTCAATCGTGAGAGCCTTCAATTCCTTCACTGGACGTTAAATAGTCAATTCAGAACAGATACGAATAACAGGAACCTGATTGATATACATGTTTTTTTTTTAGGCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTC</genome_strand>
        <mrna_strand>GGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGG.................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAAATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTTTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGGCTTCTGTTGCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376847" ref_strand="+" ref_description="SGN-E376847 [TUS-19-N7]">
      <seq>ggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctggttcattaacactcccctcgtcgaacaagtgctgggagataaagaatttctggaaggggtagtatcaagaactcctcttaagcgtcctggagaagttgaagaagttttatcaatggtagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103321" stop="107902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="216" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="433" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="540" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106261" i_stop="107507" i_length="1247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107508" g_stop="107602" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="635" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E376847" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
          <exon e_start="107508" e_stop="107602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAAGTAATATTTCTCTCAACTTAATTATATCTTTCAAATATGTAAAATTCTTTTAGTGCATAGTATAAATTAATAAATTTATTTTTAATTATTTACATAAATAAGGAAAAGAAAAATTAGTATAGGGTACAAACATAAAGGTGGGATATAGAACTCAATACCTAGAGTTATCAAAAAGGGCCGATTCAGTCCCACACTGGCCATGCCTCGCGGGCCAAGAAAGATGAAGGCAAAGCATGGGCTGGCCCTTCATTTAAAAGAGTTTGAAAATACTTAACCTAATCCAATCTTAGAATGGCAAAGGGAGGGCCAGGTAGCCCTTTTTTCCCATTGTTTTTCTTTTCAAACTGAAAATTCTATAATGTCAAGAAAATGAAAAGATTTCAAATAAAATATGGCAAACAATGGTGTTATTTCAATAACACTAGCAAAAATTTAGTGTAATTAGAATGTATCCTGGATACTAGATATGCGAGATAAAATGCATGTATTCGGTGTGATGTATCTCAAATACGTGAGTGAGATAAGAGAGGGCAAGCAAGATGGGAAGGAGGCGATCGAGGGTGCGAAATTTGTCTATGTATTGTAGATACATGTGAATCCGGAGCAAAATTAATTAATCTAATTTTGAGTTCATATATCCCGAGATACAATATACCGTTCCTTTAAGTAATTTTATCATATACCAGCGAGATTGATATAAGTTATCCTTAAATAAATAGTTTTGGTCCATGGGTTGATCCCGATCCGATCTCGATCTAGGAGCTTATAAGTCCTAGTCTTAAATGAACTTGAAAAATCTTATCTCAATTCTATCCTAATAACTTATTGCGTTAGGTCCACCGATGGACTAAGCCATTTTAATGACTCTATCAATAGCTTTAAGAAATTAACTATATATATTTAAATAATAGTTTTCTAATCCAATAAATTAATATTACTATGTTACTGTGGAATATTAAACTCGAACCTATCAACAATTAAATTAATCCTTCCATTATCATGGCTGTGGTGGTCATGGTGTTGTAGTGGTGGACAAAAAAGTGGAGGGGGTTGGGACAATATGATGACATGTCATGAGGTGTTCATGATTTCATTAAAATATTAATAGAACTAATATAATATTAGTAGATAGGGTATATCTGAGCGACTTTTTTTGTAATGAATAATATAACGACGGGCATATATATGATTCTTTTTTCGATAGTAAAAAGACAAATTTGACCCTTTTGATGGCTTTGTATTGACAGGTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTA</genome_strand>
        <mrna_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTTATCAATGGTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232954" ref_strand="+" ref_description="SGN-E232954 [cLED-6-A8]">
      <seq>ggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctcatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctaggtcattaacactcccctcgtcgaacaagtgctgggagataaagaatttctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103321" stop="107834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="216" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="433" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="540" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106261" i_stop="107507" i_length="1247">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107508" g_stop="107534" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="567" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E232954" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
          <exon e_start="107508" e_stop="107534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAAGTAATATTTCTCTCAACTTAATTATATCTTTCAAATATGTAAAATTCTTTTAGTGCATAGTATAAATTAATAAATTTATTTTTAATTATTTACATAAATAAGGAAAAGAAAAATTAGTATAGGGTACAAACATAAAGGTGGGATATAGAACTCAATACCTAGAGTTATCAAAAAGGGCCGATTCAGTCCCACACTGGCCATGCCTCGCGGGCCAAGAAAGATGAAGGCAAAGCATGGGCTGGCCCTTCATTTAAAAGAGTTTGAAAATACTTAACCTAATCCAATCTTAGAATGGCAAAGGGAGGGCCAGGTAGCCCTTTTTTCCCATTGTTTTTCTTTTCAAACTGAAAATTCTATAATGTCAAGAAAATGAAAAGATTTCAAATAAAATATGGCAAACAATGGTGTTATTTCAATAACACTAGCAAAAATTTAGTGTAATTAGAATGTATCCTGGATACTAGATATGCGAGATAAAATGCATGTATTCGGTGTGATGTATCTCAAATACGTGAGTGAGATAAGAGAGGGCAAGCAAGATGGGAAGGAGGCGATCGAGGGTGCGAAATTTGTCTATGTATTGTAGATACATGTGAATCCGGAGCAAAATTAATTAATCTAATTTTGAGTTCATATATCCCGAGATACAATATACCGTTCCTTTAAGTAATTTTATCATATACCAGCGAGATTGATATAAGTTATCCTTAAATAAATAGTTTTGGTCCATGGGTTGATCCCGATCCGATCTCGATCTAGGAGCTTATAAGTCCTAGTCTTAAATGAACTTGAAAAATCTTATCTCAATTCTATCCTAATAACTTATTGCGTTAGGTCCACCGATGGACTAAGCCATTTTAATGACTCTATCAATAGCTTTAAGAAATTAACTATATATATTTAAATAATAGTTTTCTAATCCAATAAATTAATATTACTATGTTACTGTGGAATATTAAACTCGAACCTATCAACAATTAAATTAATCCTTCCATTATCATGGCTGTGGTGGTCATGGTGTTGTAGTGGTGGACAAAAAAGTGGAGGGGGTTGGGACAATATGATGACATGTCATGAGGTGTTCATGATTTCATTAAAATATTAATAGAACTAATATAATATTAGTAGATAGGGTATATCTGAGCGACTTTTTTTGTAATGAATAATATAACGACGGGCATATATATGATTCTTTTTTCGATAGTAAAAAGACAAATTTGACCCTTTTGATGGCTTTGTATTGACAGGTGCTGGGAGATAAAGAATTTCTGGAA</genome_strand>
        <mrna_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTAGGTCATTAACACTCCCCTCGTCGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGAGATAAAGAATTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252910" ref_strand="+" ref_description="SGN-E252910 [cLEG-16-P2]">
      <seq>cacttatggaattgggcatgcaattgtggaggagctttgtgaacttggtgcaaaagtgtatacatgttcaaggaatgaatcaatcctcaatgaatgtttgaaaaagtggacagataaaggccttcaagtaaaaggttgtgtatgtgatgtatcatctaaagagcaaagagtacaactcatggaaaaagtttccttggaatttgatggaaaactcaacattcttataaacaatgttggaacaaacatttggaagcctactactgaatatactggtgaagattatgcacatatgatggctacaaatttagaatcttcattccatttgagtcaacttgctaatcctcttcttaaatcatctggagttggaagtattgtattcttgtcttctgttgctggtcttgtccacctatctggcacttctatttatggagcaacaaaaggagcaatgaatcaacttacaccaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctggttcattaacactcccctcgtcgaacaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103321" stop="106562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103625" g_stop="103832" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="223" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104044" g_stop="104260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="440" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="547" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E252910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103625" e_stop="103832"/>
          <exon e_start="104044" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTTGTAAGAACTAATAATTCCATATATCTCGTAACTTTAAACATGTCGTGCAAGTAAAATATTAGAATTACCAAGTACATGATACTAAAAAGGAAAGTATGACGACGTTACGTTTATACTAATACATGGATGGACAAAGTATGACGATGTTACGTTTATACTAATACATGGATGGACATATATATTGCCTTATTATGTTATATTGTTGTTGTAGATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA</genome_strand>
        <mrna_strand>GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT...................................................................................................................................................................................................................ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACCAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265163" ref_strand="-" ref_description="SGN-E265163 [cLEI-2-I22]">
      <seq>gcacttctatttatggagcaacaaaaggagcaatgaatcaacttacacgaaatttggcttgtgaatgggcaaaagatggaattcgtgttaatggggttgcaccctggttcattaacactcccctcgtcgaacaagtgctgggagataaagaatttctggaaggggtagtatcaagaactcctcttaagcgtcctggagaagttgaagaagtttcatcaatggtagcttatctttgtcttcctgctgcttcctatgttaccggtcaagttattgcagttgatggaggattcactgtttatggcttccaacagcctggctattaactattactagtccgacaaaaaaaaaattgcaatgaatttgataataatgatcgagtgatattacttttttagctcgaacaaattgggcttgtttgaatatggtagcatagaatttctagctacctactagtacttttgtaataatgttgtatttaatttgagcatgtttggtgtgttttgtttgaattgagggtttatgagatgatcctttttccttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103934" stop="108214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104234" g_stop="104260" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106154" g_stop="106260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="134" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106261" i_stop="107507" i_length="1247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107508" g_stop="107917" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="544" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E265163" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265163" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104234" e_stop="104260"/>
          <exon e_start="106154" e_stop="106260"/>
          <exon e_start="107508" e_stop="107917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCTATTTATGGAGCAACAAAAGGTACTCATCTATCCTTAAATAGTAGAATCGTTAATATGGACTAGGTCCGTTGGACCGGCGTGCCTAATTCGAGATTTAATAGGGTTGGGCTAAGATTTTTGGAACACATTTAAGAAAATGACTTTTTAGCCCGGCATGAATAAGCCTGTTGATTTAATGGGCTTGAAAAATATAGGTAGAGCCGGCTCGTTGGCCAATAATAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTCCAAATTCAAAATAATTAGGTTAATATTTTTATTTATATATTTATACTTTTACTTGAAAAAAACTTAATAAATATAGATAATTTTGAGAGACCTCCATGTTTCGCTCTATAACACTCACCTCCCCTTTAGTTTACGATATTACGTCTACCTCCCTTATTTTCATTTACTTGTAACCATTCTTTAAGCCTATTTAAAATAAATATAAATTAATATAAATTTGACAAATTTACCCTTATATATGAATGTTTAGATCTAATTTTCAATGATTTATCTTTATTCGTTGGATCATGTTTCTTTTTCGCTTGTTTAAATGTTTAACTAGAACAAAATCTTATCGTTCTTATCGAATTTCTTTCTTGGGAAGTTCAATTTTGTCTTCTATTTGAAGAAATTTTTGCCGGAAAATGATGGATTATTGTGGAGAAAAAATTTACGTGAATTTTTAAAAGTGAAATAGAGATAAAAAGTTAATATTTGGTGAAAATGTGGGTCAGCTTAGTTGAAGACTTTGATTTTTGTTGGATTAAAAAAATAAATCTTTATGTTAACTATTTTAAAAGTATTTTGTTAAATGAGTTATTTTTTATATAATATTTATTACTAAGAAGAAATTTATATATAAAAGAGTAAAATTGTCAAATCTATATTAATTTATATTTATTTTAAATAGGTTTAAAGAATGGTTACAATTAAATGAAAATAAGGGAGGTAGACGTAATATCGTAAACCAAAGGGGAGGTGAATGTTATAGAGCGAAACATGGAGGTCTCTGAAATTATCTCTATTTATTATAAAAATATATAATTTTTTTTAAAAAGTGGGTTGGCCTGTCAAACCTGTAGGCCACTTACTTATGGGTTGGACCGACCATATTCTGGCCCACGCCAAAAATGGGCTAGCCCGGCCTGACCGGTAAAATGTCAAAGCCTGTATAGGTTAGCCCGGATGGGGTGGGCTATCCCATATTGACAGCTCTATTAAATAGTGAGTAATATACAACTAAGGTACGTATTAAGGGGCGGAGCCAGCATACTGTTAGGATTCATCTGAATTCCCTTCAAATATATGTCGAACCCTCTTCAATTAGTTCATATGTTGTACTTCTCCAAAGTTTGAACCCTCTTCTTAAAATCTTAGCTTTGTCACGATACGTAATTGGTTAAGCTTATATATAAGTTGATTGATCCAACTGACTAGTCAACATATTTTAGCTTATTACTTGTTTGATATACAATAAATAAAGTGTTTATAAGACGAAGTTGTAAGTTGATCATAAAAGATTTTCCGCTTATAAACACTTTTGATTGGACTAAATATTTTATTATTTTATCCTTAATATTTTTTTAAATTTACGATATTATATATTTGTTGTTCCTCCTTTTCTATGCTCGAATACTTTTAAATTTATTTATAATGTTTACAAAATACTTAAGTACAGTAATTAACATTTTTTAACAAGACACATCAACTACTTATTAACACTTTTGATACTTGTGTCTAAACAAGTAACTATTTATTTATACAAACAATTTCAATATTTAAAAAATAATTTTCAACACTTAGAACTTATCAGCTATTTACGATCAACGATTCAAGCTCGACTTTATATTTATTTATTTTATTATTAACTTATAATGACAGGAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAAGTAATATTTCTCTCAACTTAATTATATCTTTCAAATATGTAAAATTCTTTTAGTGCATAGTATAAATTAATAAATTTATTTTTAATTATTTACATAAATAAGGAAAAGAAAAATTAGTATAGGGTACAAACATAAAGGTGGGATATAGAACTCAATACCTAGAGTTATCAAAAAGGGCCGATTCAGTCCCACACTGGCCATGCCTCGCGGGCCAAGAAAGATGAAGGCAAAGCATGGGCTGGCCCTTCATTTAAAAGAGTTTGAAAATACTTAACCTAATCCAATCTTAGAATGGCAAAGGGAGGGCCAGGTAGCCCTTTTTTCCCATTGTTTTTCTTTTCAAACTGAAAATTCTATAATGTCAAGAAAATGAAAAGATTTCAAATAAAATATGGCAAACAATGGTGTTATTTCAATAACACTAGCAAAAATTTAGTGTAATTAGAATGTATCCTGGATACTAGATATGCGAGATAAAATGCATGTATTCGGTGTGATGTATCTCAAATACGTGAGTGAGATAAGAGAGGGCAAGCAAGATGGGAAGGAGGCGATCGAGGGTGCGAAATTTGTCTATGTATTGTAGATACATGTGAATCCGGAGCAAAATTAATTAATCTAATTTTGAGTTCATATATCCCGAGATACAATATACCGTTCCTTTAAGTAATTTTATCATATACCAGCGAGATTGATATAAGTTATCCTTAAATAAATAGTTTTGGTCCATGGGTTGATCCCGATCCGATCTCGATCTAGGAGCTTATAAGTCCTAGTCTTAAATGAACTTGAAAAATCTTATCTCAATTCTATCCTAATAACTTATTGCGTTAGGTCCACCGATGGACTAAGCCATTTTAATGACTCTATCAATAGCTTTAAGAAATTAACTATATATATTTAAATAATAGTTTTCTAATCCAATAAATTAATATTACTATGTTACTGTGGAATATTAAACTCGAACCTATCAACAATTAAATTAATCCTTCCATTATCATGGCTGTGGTGGTCATGGTGTTGTAGTGGTGGACAAAAAAGTGGAGGGGGTTGGGACAATATGATGACATGTCATGAGGTGTTCATGATTTCATTAAAATATTAATAGAACTAATATAATATTAGTAGATAGGGTATATCTGAGCGACTTTTTTTGTAATGAATAATATAACGACGGGCATATATATGATTCTTTTTTCGATAGTAAAAAGACAAATTTGACCCTTTTGATGGCTTTGTATTGACAGGTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTATCTTTGTCTTCCTGCTGCTTCCTATGTTACCGGTCAAGTTATTGCAGTTGATGGAGGATTCACTGTTTATGGCTTCCAACAGCCTGGCTATTAACTATTACTAGTCCGACAAAAAAAAAATTGCAATGAATTTGATAATAATGATCGAGTGATATTACTTTTTTAGCTCGAACAAATTGGGCTTGTTTGAATATGGTAGCATAGAATTTCTAGCTACCTACTAGTACTTTTGTAATAATGTTGTATTTAATTTGAGCATGTTTGGTGTGTTTTGTTTGAATTGAGGGTTTATGAGATGATCCTTTTTCCTTATTT</genome_strand>
        <mrna_strand>GCACTTCTATTTATGGAGCAACAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTATCTTTGTCTTCCTGCTGCTTCCTATGTTACCGGTCAAGTTATTGCAGTTGATGGAGGATTCACTGTTTATGGCTTCCAACAGCCTGGCTATTAACTATTACTAGTCCGACAAAAAAAAAATTGCAATGAATTTGATAATAATGATCGAGTGATATTACTTTTTTAGCTCGAACAAATTGGGCTTGTTTGAATATGGTAGCATAGAATTTCTAGCTACCTACTAGTACTTTTGTAATAATGTTGTATTTAATTTGAGCATGTTTGGTGTGTTTTGTTTGAATTGAGGGTTTATGAGATGATCCTTTTTCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110655" stop="92571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110355" g_stop="110019" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110355" e_stop="110019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGGTTTGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGAACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109729" stop="110566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110029" g_stop="110266" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110029" e_stop="110266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109730" stop="110807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110030" g_stop="110507" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110030" e_stop="110507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTTCGGATA-TCAGGGTGAGCTAATACTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="+" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110521" stop="111406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110821" g_stop="111106" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110821" e_stop="111106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGAACAGTAGGGGGGCGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCCTTCTTTTGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCATTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0034C13-33IYk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0034C13.1" temp_strand="-" temp_description="C06HBa0034C13.1  AC211028.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0034C13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111845" stop="110813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111545" g_stop="111113" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0034C13.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0034C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111545" e_stop="111113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGGCCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGATTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCCCTTCCTCAAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTTCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>146</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10882" PGL_stop="7791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9683" e_stop="9679"/>
            <exon e_start="9591" e_stop="9452"/>
            <exon e_start="9113" e_stop="9050"/>
            <exon e_start="8970" e_stop="8868"/>
            <exon e_start="8781" e_stop="8741"/>
            <exon e_start="8582" e_stop="8499"/>
            <exon e_start="8318" e_stop="7791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.113" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9683" e_stop="9679" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.113">
            <gDNA_intron_boundary i_start="9678" i_stop="9592" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9591" e_stop="9452" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.803" acc_prob="0.881">
            <gDNA_intron_boundary i_start="9451" i_stop="9114" i_length="338"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9113" e_stop="9050" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9049" i_stop="8971" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8970" e_stop="8868" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.930" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8867" i_stop="8782" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8781" e_stop="8741" e_length="41"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8740" i_stop="8583" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8582" e_stop="8499" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.809">
            <gDNA_intron_boundary i_start="8498" i_stop="8319" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="8318" e_stop="7791" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9683" stop="9679"/>
              <exon start="9591" stop="9452"/>
              <exon start="9113" stop="9050"/>
              <exon start="8970" stop="8868"/>
              <exon start="8781" stop="8741"/>
              <exon start="8582" stop="8545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9682" stop="9679"/>
              <exon start="9591" stop="9452"/>
              <exon start="9113" stop="9050"/>
              <exon start="8970" stop="8868"/>
              <exon start="8781" stop="8741"/>
              <exon start="8582" stop="8499"/>
              <exon start="8318" stop="7791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9682" stop="9679"/>
              <exon start="9591" stop="9452"/>
              <exon start="9113" stop="9050"/>
              <exon start="8970" stop="8868"/>
              <exon start="8781" stop="8741"/>
              <exon start="8582" stop="8499"/>
              <exon start="8318" stop="8192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9682" stop="9679"/>
              <exon start="9591" stop="9452"/>
              <exon start="9113" stop="9050"/>
              <exon start="8970" stop="8868"/>
              <exon start="8781" stop="8741"/>
              <exon start="8582" stop="8511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGG : ATGTTACAAGTAAGCAATTGGAGCAGTGCAGAGAACCTTCTAAACCGGTAAAAAGACGTCGAGTGCTACAATTTGATGCTGAGATCCTGGATTCCACTGGTTCAAATGAAAAGCTTGCATTAACTTTCTTAAAATCTAAG : GAGAGGAATGCCTATTTTGAAGAAGCTAGGAGTGATGTGTCAGACTGGTTTTCCGAATATGCAG : ATGGTGCAACATCTTCGGCTCAGGAAGGTTTTGATGAGTCATCTGAAGAATGGCTTACTGATTGCATTAATGATCCTGAGTTGCAGATTATTTCCGAGGATAT : GAATGCATCTGGAGTATCTGATATTCAAGCAGACACAATGG : AAGTTGTCAATTCCCCACCAGAATGCGAGATAACTATGGTTAAAAGCAGTCCTGCTCGTACTTATGGGAACATTGTTTTCAAAG : GTAGGAGTTCATACACAAAGACTCCCAAGAAAGGTGCATCTTCTGTAGTTTACCCGTTTGGATTTATCAAACCCTGCAGCGCTCAAGGAGATGTGACTTTAAAAGAGATCAACAAAAAGATACGTACTCCGCCACCATCTAAATCAAAGCAACACAATCAAGATTCACCACCTTATCCAACATCAGCTTTTTCCGGGAAGCCTGTCATTGGCAAGACAAAAATTCACACAGAGGGCGGAAGAGGCAGCATTACCATCATGAGAACTAAAGGGTAATCTCTTGAAATTTTTTTTTCTTTTGGGACAAACTTTAGCATGGGACTGCTCCAAATTCCTTTGACAGAGCAATTTTATGGTACTGTTTTTAGGTCTTCAGCACATAAGTTGAATTTTGTATTAGTCCTTATTAGGGAGAAAATGTGGAGACTTAGTAGTGGATTAGTCTCTCATTATTTTGAAATCTCAATGTATATTGGTTTATTAGATCAATGACTTTTTATCTATTTTGATAAATTAGCAAAATTTTGGG</gDNA_template>
            <first_frame> Q  G :   C  Y  K  *  A  I  G  A  V  Q  R  T  F  *  T  G  K  K  T  S  S  A  T  I  *  C  *  D  P  G  F  H  W  F  K  *  K  A  C  I  N  F  L  K  I  *   : G  E  E  C  L  F  *  R  S  *  E  *  C  V  R  L  V  F  R  I  C  R :   W  C  N  I  F  G  S  G  R  F  *  *  V  I  *  R  M  A  Y  *  L  H  *  *  S  *  V  A  D  Y  F  R  G  Y  :  E  C  I  W  S  I  *  Y  S  S  R  H  N  G :   S  C  Q  F  P  T  R  M  R  D  N  Y  G  *  K  Q  S  C  S  Y  L  W  E  H  C  F  Q  R :   *  E  F  I  H  K  D  S  Q  E  R  C  I  F  C  S  L  P  V  W  I  Y  Q  T  L  Q  R  S  R  R  C  D  F  K  R  D  Q  Q  K  D  T  Y  S  A  T  I  *  I  K  A  T  Q  S  R  F  T  T  L  S  N  I  S  F  F  R  E  A  C  H  W  Q  D  K  N  S  H  R  G  R  K  R  Q  H  Y  H  H  E  N  *  R  V  I  S  *  N  F  F  F  F  W  D  K  L  *  H  G  T  A  P  N  S  F  D  R  A  I  L  W  Y  C  F  *  V  F  S  T  *  V  E  F  C  I  S  P  Y  *  G  E  N  V  E  T  *  *  W  I  S  L  S  L  F  *  N  L  N  V  Y  W  F  I  R  S  M  T  F  Y  L  F  *  *  I  S  K  I  L   </first_frame>
            <second_frame>  K   : D  V  T  S  K  Q  L  E  Q  C  R  E  P  S  K  P  V  K  R  R  R  V  L  Q  F  D  A  E  I  L  D  S  T  G  S  N  E  K  L  A  L  T  F  L  K  S  K  :  E  R  N  A  Y  F  E  E  A  R  S  D  V  S  D  W  F  S  E  Y  A   : D  G  A  T  S  S  A  Q  E  G  F  D  E  S  S  E  E  W  L  T  D  C  I  N  D  P  E  L  Q  I  I  S  E  D  M :   N  A  S  G  V  S  D  I  Q  A  D  T  M   : E  V  V  N  S  P  P  E  C  E  I  T  M  V  K  S  S  P  A  R  T  Y  G  N  I  V  F  K   : G  R  S  S  Y  T  K  T  P  K  K  G  A  S  S  V  V  Y  P  F  G  F  I  K  P  C  S  A  Q  G  D  V  T  L  K  E  I  N  K  K  I  R  T  P  P  P  S  K  S  K  Q  H  N  Q  D  S  P  P  Y  P  T  S  A  F  S  G  K  P  V  I  G  K  T  K  I  H  T  E  G  G  R  G  S  I  T  I  M  R  T  K  G  *  S  L  E  I  F  F  S  F  G  T  N  F  S  M  G  L  L  Q  I  P  L  T  E  Q  F  Y  G  T  V  F  R  S  S  A  H  K  L  N  F  V  L  V  L  I  R  E  K  M  W  R  L  S  S  G  L  V  S  H  Y  F  E  I  S  M  Y  I  G  L  L  D  Q  *  L  F  I  Y  F  D  K  L  A  K  F  W  </second_frame>
            <third_frame>   R  :  M  L  Q  V  S  N  W  S  S  A  E  N  L  L  N  R  *  K  D  V  E  C  Y  N  L  M  L  R  S  W  I  P  L  V  Q  M  K  S  L  H  *  L  S  *  N  L  R :   R  G  M  P  I  L  K  K  L  G  V  M  C  Q  T  G  F  P  N  M  Q  :  M  V  Q  H  L  R  L  R  K  V  L  M  S  H  L  K  N  G  L  L  I  A  L  M  I  L  S  C  R  L  F  P  R  I   : *  M  H  L  E  Y  L  I  F  K  Q  T  Q  W  :  K  L  S  I  P  H  Q  N  A  R  *  L  W  L  K  A  V  L  L  V  L  M  G  T  L  F  S  K  :  V  G  V  H  T  Q  R  L  P  R  K  V  H  L  L  *  F  T  R  L  D  L  S  N  P  A  A  L  K  E  M  *  L  *  K  R  S  T  K  R  Y  V  L  R  H  H  L  N  Q  S  N  T  I  K  I  H  H  L  I  Q  H  Q  L  F  P  G  S  L  S  L  A  R  Q  K  F  T  Q  R  A  E  E  A  A  L  P  S  *  E  L  K  G  N  L  L  K  F  F  F  L  L  G  Q  T  L  A  W  D  C  S  K  F  L  *  Q  S  N  F  M  V  L  F  L  G  L  Q  H  I  S  *  I  L  Y  *  S  L  L  G  R  K  C  G  D  L  V  V  D  *  S  L  I  I  L  K  S  Q  C  I  L  V  Y  *  I  N  D  F  L  S  I  L  I  N  *  Q  N  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9682" stop="9679"/>
                    <exon start="9591" stop="9452"/>
                    <exon start="9113" stop="9050"/>
                    <exon start="8970" stop="8868"/>
                    <exon start="8781" stop="8741"/>
                    <exon start="8582" stop="8499"/>
                    <exon start="8318" stop="8044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDVTSKQLEQCREPSKPVKRRRVLQFDAEILDSTGSNEKLALTFLKSKERNAYFEEARSDVSDWFSEYADGATSSAQEGFDESSEEWLTDCINDPELQIISEDMNASGVSDIQADTMEVVNSPPECEITMVKSSPARTYGNIVFKGRSSYTKTPKKGASSVVYPFGFIKPCSAQGDVTLKEINKKIRTPPPSKSKQHNQDSPPYPTSAFSGKPVIGKTKIHTEGGRGSITIMRTKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8043" stop="7828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLEIFFSFGTNFSMGLLQIPLTEQFYGTVFRSSAHKLNFVLVLIREKMWRLSSGLVSHYFEISMYIGLLDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10882" e_stop="10748"/>
            <exon e_start="9941" e_stop="9607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10882" e_stop="10748" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="10747" i_stop="9942" i_length="806"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="9941" e_stop="9607" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10882" stop="10748"/>
              <exon start="9941" stop="9607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCGTATAACAATAGCACTCATCACTCTTATATCTACTATTTTCTCCATTTTCTACTTGTTGAACGGTTATTTTTATGTTGTGGTTGCACCGGAGATGGCTGATCTGTCCATGGATTTCGATACTAACAG : CGAGATATGGGATTGGCAATGTGGAGAAACTTTTCTTCAAGACAGTGAGAACTTTGGTAAGTGTAGTGCTTTCTCATATGGTTATAAGTGGCAAAAGATAGTTAAGTGGAGTCATCCATGTTAAACAGGGCTGCAGCCTCAAACTGACGTATCAGGATGTCCATGGACTGGTGTAACTGAAAAAAACAAAGATATTTCCTACATGTTTGTTGATGAGACAACCCCGGTAAAGGATTGTGGTGACTTGACTTGCGATGTCAAGGGTAAAGGATCCAAATATAACAATTATCTTTCTTCTAAAACTCAACATGTTTGAAGCATCTTATCCTGATTTA</gDNA_template>
            <first_frame> F  L  P  Y  N  N  S  T  H  H  S  Y  I  Y  Y  F  L  H  F  L  L  V  E  R  L  F  L  C  C  G  C  T  G  D  G  *  S  V  H  G  F  R  Y  *  Q  :  R  D  M  G  L  A  M  W  R  N  F  S  S  R  Q  *  E  L  W  *  V  *  C  F  L  I  W  L  *  V  A  K  D  S  *  V  E  S  S  M  L  N  R  A  A  A  S  N  *  R  I  R  M  S  M  D  W  C  N  *  K  K  Q  R  Y  F  L  H  V  C  *  *  D  N  P  G  K  G  L  W  *  L  D  L  R  C  Q  G  *  R  I  Q  I  *  Q  L  S  F  F  *  N  S  T  C  L  K  H  L  I  L  I   </first_frame>
            <second_frame>  F  F  R  I  T  I  A  L  I  T  L  I  S  T  I  F  S  I  F  Y  L  L  N  G  Y  F  Y  V  V  V  A  P  E  M  A  D  L  S  M  D  F  D  T  N  S :   E  I  W  D  W  Q  C  G  E  T  F  L  Q  D  S  E  N  F  G  K  C  S  A  F  S  Y  G  Y  K  W  Q  K  I  V  K  W  S  H  P  C  *  T  G  L  Q  P  Q  T  D  V  S  G  C  P  W  T  G  V  T  E  K  N  K  D  I  S  Y  M  F  V  D  E  T  T  P  V  K  D  C  G  D  L  T  C  D  V  K  G  K  G  S  K  Y  N  N  Y  L  S  S  K  T  Q  H  V  *  S  I  L  S  *  F  </second_frame>
            <third_frame>   S  S  V  *  Q  *  H  S  S  L  L  Y  L  L  F  S  P  F  S  T  C  *  T  V  I  F  M  L  W  L  H  R  R  W  L  I  C  P  W  I  S  I  L  T   : A  R  Y  G  I  G  N  V  E  K  L  F  F  K  T  V  R  T  L  V  S  V  V  L  S  H  M  V  I  S  G  K  R  *  L  S  G  V  I  H  V  K  Q  G  C  S  L  K  L  T  Y  Q  D  V  H  G  L  V  *  L  K  K  T  K  I  F  P  T  C  L  L  M  R  Q  P  R  *  R  I  V  V  T  *  L  A  M  S  R  V  K  D  P  N  I  T  I  I  F  L  L  K  L  N  M  F  E  A  S  Y  P  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10881" stop="10748"/>
                    <exon start="9941" stop="9818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRITIALITLISTIFSIFYLLNGYFYVVVAPEMADLSMDFDTNSEIWDWQCGETFLQDSENFGKCSAFSYGYKWQKIVKWSHPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13122" PGL_stop="15184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13122" e_stop="15184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="13122" e_stop="15184" e_length="2063"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13122" stop="13831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13122" stop="13714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13122" stop="13644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13193" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13193" stop="13548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13639" stop="14299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13708" stop="14471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13708" stop="14370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14113" stop="14443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14320" stop="14878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14324" stop="15087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14404" stop="15184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14406" stop="14939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14480" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTTGTAGGTCTTACCTAATTCTTCACTGTCTCGATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACGAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCGGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAGCTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCAAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGGAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGCGGCGAGTACCCGGTTCAAGATCAATACCGAAGCCAATATCCCTATCTGGTGGCATACCAGGAAAATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAAAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATATAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGGCCACCATTATCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTATCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCACCTCGCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGACATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  C  R  S  Y  L  I  L  H  C  L  D  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  C  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  G  L  W  H  I  R  C  P  Y  F  Q  L  M  I  A  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  V  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  Q  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  E  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  A  A  S  T  R  F  K  I  N  T  E  A  N  I  P  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  D  H  R  N  R  L  K  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  I  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  I  V  A  P  V  C  P  S  P  R  P  F  W  W  P  P  L  S  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  R  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  T  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  F  V  G  L  T  *  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  L  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  V  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  R  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  A  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  *  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  K  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  W  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  R  R  V  P  G  S  R  S  I  P  K  P  I  S  L  S  G  G  I  P  G  K  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  S  K  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  *  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  L  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  S  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  I  *  W  L  Q  F  A  H  H  L  G  R  F  G  G  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  Y  P  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  I  H  L  A  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  I  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  *  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  L  *  V  L  P  N  S  S  L  S  R  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  Y  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  E  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  R  S  L  A  H  P  L  P  V  F  S  I  D  D  S  W  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  K  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  G  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  C  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  N  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  H  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  V  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  *  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  A  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  Y  S  G  S  S  L  P  I  T  S  A  V  L  V  A  T  I  I  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  I  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  F  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  F  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  D  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13287" stop="13622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQICKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSGLWHIRCPYFQLMIAGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13824" stop="14093"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNAASTRFKINTEANIPIWWHTRKICKEHIQKLTDHRNRLKIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14552" stop="14806"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSGSSLPITSAVLVATIISTTTSSRITASTMTTSTSSYWGSITLFGTIPPNMSSIPTSITLSRVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14862" stop="15074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPRFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15137" PGL_stop="13691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15137" e_stop="14965"/>
            <exon e_start="14220" e_stop="13691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="15137" e_stop="14965" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14964" i_stop="14221" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="14220" e_stop="13691" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15137" stop="14965"/>
              <exon start="14220" stop="13691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGTCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGTGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTTTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATTTTCCTGGTATGCCACCAGATAGGGATATTGGCTTCGGTATTGATCTTGAACCGGGTACTCGCCGCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTCCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTTGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  F  E  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  F  P  G  M  P  P  D  R  D  I  G  F  G  I  D  L  E  P  G  T  R  R  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  L  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  V  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  V  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  A  S  V  L  I  L  N  R  V  L  A  A  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  S  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  W  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  S  L  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  *  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  F  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  F  S  W  Y  A  T  R  *  G  Y  W  L  R  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  P  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  F  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15136" stop="14965"/>
                    <exon start="14220" stop="13820"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYVTQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMDDFDVILGMTWLSPQFVILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSILSRFRWSVSFWMCSLQIFLVCHQIGILASVLILNRVLAAFLYPLIEWLPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16215" PGL_stop="19749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17372" e_stop="18191"/>
            <exon e_start="18396" e_stop="18401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="0.986"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="17372" e_stop="18191" e_length="820"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="18192" i_stop="18395" i_length="204"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="18396" e_stop="18401" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17372" stop="17743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17640" stop="18191"/>
              <exon start="18396" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAGCAAGGTGCTTTCTCGAGCTTGATTGCTGCCAAGTCTATCCCGAAGAGCGTGCATTGTTTGGCAATGAGGTTAATGGATGAGCGTATCACTCATCCTGATAAGTATACAGATGATGGGAAGCCTACTCCACCAGAATTTGAGGATCCTAGCCTTTATCATTATGCAATCTTCTCTGACAACGTTCTTGCTGCTTCAGTTGTGGTGAATTCAGCAGTTAAAAACTCGAATGACCCATCGAAGCATGTGTTTCACGTGGTGACTGATAAAATGAATCTTGGGGCTATGCAAGTTATGTTCAAGATGAAAGAATATAATGGGGCTTTTATCGAAGTGAAGGCGGTCGAGGATTATAAGTTCCTGAATTCTTCGTATGTTCCGGTACTTAAACAGCTTGAATCTGCAAAACTTCAGCAGTTTTACTTCGAGAATAAGCTCGAAAATGCAACAAAGGATACAACTAATATGAAATTCAGAAACCCGAAGTATCTCTCCATATTGAACCACATTAGATTCTATTTACCAGAATTGTACCCCAAGTTGCACAGGATATTGTTCTTGGACGATGATATTGTTGTTCAGAAGGATTTGACTGGTCTATGGAAGATAGATATGGATGGTAAGGTGAATGGAGCTGTGGAGACATGTTTTGGTTCATTTCATCGCTATGCACAATACATGAATTTCTCTCATCCATTGATCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTG : ACTATA</gDNA_template>
            <first_frame> E  E  A  R  C  F  L  E  L  D  C  C  Q  V  Y  P  E  E  R  A  L  F  G  N  E  V  N  G  *  A  Y  H  S  S  *  *  V  Y  R  *  W  E  A  Y  S  T  R  I  *  G  S  *  P  L  S  L  C  N  L  L  *  Q  R  S  C  C  F  S  C  G  E  F  S  S  *  K  L  E  *  P  I  E  A  C  V  S  R  G  D  *  *  N  E  S  W  G  Y  A  S  Y  V  Q  D  E  R  I  *  W  G  F  Y  R  S  E  G  G  R  G  L  *  V  P  E  F  F  V  C  S  G  T  *  T  A  *  I  C  K  T  S  A  V  L  L  R  E  *  A  R  K  C  N  K  G  Y  N  *  Y  E  I  Q  K  P  E  V  S  L  H  I  E  P  H  *  I  L  F  T  R  I  V  P  Q  V  A  Q  D  I  V  L  G  R  *  Y  C  C  S  E  G  F  D  W  S  M  E  D  R  Y  G  W  *  G  E  W  S  C  G  D  M  F  W  F  I  S  S  L  C  T  I  H  E  F  L  S  S  I  D  Q  F  *  V  Q  S  Q  G  V  C  M  G  L  W  N  E  L  L  *  F  G  C  L  E  E  G  E  A  H  R  G  L  P  L  L  A  D  S   : D  Y  </first_frame>
            <second_frame>  K  K  Q  G  A  F  S  S  L  I  A  A  K  S  I  P  K  S  V  H  C  L  A  M  R  L  M  D  E  R  I  T  H  P  D  K  Y  T  D  D  G  K  P  T  P  P  E  F  E  D  P  S  L  Y  H  Y  A  I  F  S  D  N  V  L  A  A  S  V  V  V  N  S  A  V  K  N  S  N  D  P  S  K  H  V  F  H  V  V  T  D  K  M  N  L  G  A  M  Q  V  M  F  K  M  K  E  Y  N  G  A  F  I  E  V  K  A  V  E  D  Y  K  F  L  N  S  S  Y  V  P  V  L  K  Q  L  E  S  A  K  L  Q  Q  F  Y  F  E  N  K  L  E  N  A  T  K  D  T  T  N  M  K  F  R  N  P  K  Y  L  S  I  L  N  H  I  R  F  Y  L  P  E  L  Y  P  K  L  H  R  I  L  F  L  D  D  D  I  V  V  Q  K  D  L  T  G  L  W  K  I  D  M  D  G  K  V  N  G  A  V  E  T  C  F  G  S  F  H  R  Y  A  Q  Y  M  N  F  S  H  P  L  I  N  S  K  F  N  P  K  A  C  A  W  A  Y  G  M  N  F  F  D  L  D  A  W  R  R  E  K  L  T  E  D  Y  H  Y  W  Q  T  L  :  T  I </second_frame>
            <third_frame>   R  S  K  V  L  S  R  A  *  L  L  P  S  L  S  R  R  A  C  I  V  W  Q  *  G  *  W  M  S  V  S  L  I  L  I  S  I  Q  M  M  G  S  L  L  H  Q  N  L  R  I  L  A  F  I  I  M  Q  S  S  L  T  T  F  L  L  L  Q  L  W  *  I  Q  Q  L  K  T  R  M  T  H  R  S  M  C  F  T  W  *  L  I  K  *  I  L  G  L  C  K  L  C  S  R  *  K  N  I  M  G  L  L  S  K  *  R  R  S  R  I  I  S  S  *  I  L  R  M  F  R  Y  L  N  S  L  N  L  Q  N  F  S  S  F  T  S  R  I  S  S  K  M  Q  Q  R  I  Q  L  I  *  N  S  E  T  R  S  I  S  P  Y  *  T  T  L  D  S  I  Y  Q  N  C  T  P  S  C  T  G  Y  C  S  W  T  M  I  L  L  F  R  R  I  *  L  V  Y  G  R  *  I  W  M  V  R  *  M  E  L  W  R  H  V  L  V  H  F  I  A  M  H  N  T  *  I  S  L  I  H  *  S  I  L  S  S  I  P  R  R  V  H  G  L  M  E  *  T  S  L  I  W  M  L  G  G  G  R  S  S  Q  R  I  T  I  I  G  R  L  * :   L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17373" stop="18191"/>
                    <exon start="18396" stop="18401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQGAFSSLIAAKSIPKSVHCLAMRLMDERITHPDKYTDDGKPTPPEFEDPSLYHYAIFSDNVLAASVVVNSAVKNSNDPSKHVFHVVTDKMNLGAMQVMFKMKEYNGAFIEVKAVEDYKFLNSSYVPVLKQLESAKLQQFYFENKLENATKDTTNMKFRNPKYLSILNHIRFYLPELYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLINSKFNPKACAWAYGMNFFDLDAWRREKLTEDYHYWQTLTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18076" e_stop="18191"/>
            <exon e_start="19254" e_stop="19749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18076" e_stop="18191" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="18192" i_stop="19253" i_length="1062"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="19254" e_stop="19749" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18076" stop="18191"/>
              <exon start="19254" stop="19749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATTCTAAGTTCAATCCCAAGGCGTGTGCATGGGCTTATGGAATGAACTTCTTTGATTTGGATGCTTGGAGGAGGGAGAAGCTCACAGAGGATTACCATTATTGGCAGACTCTG : AATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTCCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTTTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGAGATCAATAATGCTGCAGTTGTCCACTTTAATGGGAATATGAAGCCATGGCTTGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGTATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTAATTTTGGTTTTTAAGTACATGAGAACAGGTGGATATTTGCTTGTCGGGTTCAGCAAGCTATTCCTGCAAGCATCCCTCAATATGACTTGTTCCTGCTCAGTCACACTGAAAATTAGTATCCACTTTCTATGTCGTAGGTGTTATCTTGTCTATCCAAGTCTTATTTATTTTTTCGAGCAGTAGTTTAGCTTTAGTTTTCAATTGTCTATACGATGTTTACTATTTTTATGGACC</gDNA_template>
            <first_frame> S  I  L  S  S  I  P  R  R  V  H  G  L  M  E  *  T  S  L  I  W  M  L  G  G  G  R  S  S  Q  R  I  T  I  I  G  R  L  * :   M  K  T  G  P  Y  G  N  W  V  H  C  L  Q  D  *  S  H  F  T  P  Q  Q  S  H  W  T  N  H  G  M  F  *  G  L  V  I  I  Q  V  S  V  W  K  R  S  I  M  L  Q  L  S  T  L  M  G  I  *  S  H  G  L  I  L  Q  W  P  N  I  G  L  Y  G  R  S  M  W  I  M  K  M  S  T  C  R  G  V  I  L  V  F  K  Y  M  R  T  G  G  Y  L  L  V  G  F  S  K  L  F  L  Q  A  S  L  N  M  T  C  S  C  S  V  T  L  K  I  S  I  H  F  L  C  R  R  C  Y  L  V  Y  P  S  L  I  Y  F  F  E  Q  *  F  S  F  S  F  Q  L  S  I  R  C  L  L  F  L  W  T </first_frame>
            <second_frame>  Q  F  *  V  Q  S  Q  G  V  C  M  G  L  W  N  E  L  L  *  F  G  C  L  E  E  G  E  A  H  R  G  L  P  L  L  A  D  S   : E  *  K  P  D  L  M  E  I  G  Y  T  A  S  R  I  N  H  I  L  L  H  N  K  A  T  G  Q  I  M  A  C  F  R  A  W  L  *  S  K  Y  Q  Y  G  R  D  Q  *  C  C  S  C  P  L  *  W  E  Y  E  A  M  A  *  Y  C  N  G  P  I  S  A  F  M  V  E  V  C  G  L  *  K  *  V  R  A  G  V  *  F  W  F  L  S  T  *  E  Q  V  D  I  C  L  S  G  S  A  S  Y  S  C  K  H  P  S  I  *  L  V  P  A  Q  S  H  *  K  L  V  S  T  F  Y  V  V  G  V  I  L  S  I  Q  V  L  F  I  F  S  S  S  S  L  A  L  V  F  N  C  L  Y  D  V  Y  Y  F  Y  G   </second_frame>
            <third_frame>   N  S  K  F  N  P  K  A  C  A  W  A  Y  G  M  N  F  F  D  L  D  A  W  R  R  E  K  L  T  E  D  Y  H  Y  W  Q  T  L  :  N  E  N  R  T  L  W  K  L  G  T  L  P  P  G  L  I  T  F  Y  S  T  T  K  P  L  D  K  S  W  H  V  L  G  L  G  Y  N  P  S  I  S  M  E  E  I  N  N  A  A  V  V  H  F  N  G  N  M  K  P  W  L  D  I  A  M  A  Q  Y  R  P  L  W  S  K  Y  V  D  Y  E  N  E  Y  V  Q  G  C  N  F  G  F  *  V  H  E  N  R  W  I  F  A  C  R  V  Q  Q  A  I  P  A  S  I  P  Q  Y  D  L  F  L  L  S  H  T  E  N  *  Y  P  L  S  M  S  *  V  L  S  C  L  S  K  S  Y  L  F  F  R  A  V  V  *  L  *  F  S  I  V  Y  T  M  F  T  I  F  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18078" stop="18191"/>
                    <exon start="19254" stop="19529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSKFNPKACAWAYGMNFFDLDAWRREKLTEDYHYWQTLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEINNAAVVHFNGNMKPWLDIAMAQYRPLWSKYVDYENEYVQGCNFGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16215" e_stop="16435"/>
            <exon e_start="19254" e_stop="19575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16215" e_stop="16435" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="16436" i_stop="19253" i_length="2818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19254" e_stop="19575" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16215" stop="16435"/>
              <exon start="19254" stop="19575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTCCTCCCTCTCAACCATAAGTGAAAAGCAAGCATTATATCTCGAAAACGGAGACTTGCTTAACAAAAATGGCTCTCCGGAGCTCCCGTACGGTCACCGGCACCGGAATACGGTTCACCTTCAAACTATTCGCGTCTTTTATCACTGTCGCTGTTTTGCTTTCATTAGCTCTCTCTTCTCTCTACACTTCCTCTGCAGATCCTTCTGATCTCGGCGTT : AATGAAAACCGGACCTTATGGAAATTGGGTACACTGCCTCCAGGATTAATCACATTTTACTCCACAACAAAGCCACTGGACAAATCATGGCATGTTTTAGGGCTTGGTTATAATCCAAGTATCAGTATGGAAGAGATCAATAATGCTGCAGTTGTCCACTTTAATGGGAATATGAAGCCATGGCTTGATATTGCAATGGCCCAATATCGGCCTTTATGGTCGAAGTATGTGGATTATGAAAATGAGTACGTGCAGGGGTGTAATTTTGGTTTTTAAGTACATGAGAACAGGTGGATATTTGCTTGTCGGGTTCAGCAAGCTA</gDNA_template>
            <first_frame> I  L  L  P  L  N  H  K  *  K  A  S  I  I  S  R  K  R  R  L  A  *  Q  K  W  L  S  G  A  P  V  R  S  P  A  P  E  Y  G  S  P  S  N  Y  S  R  L  L  S  L  S  L  F  C  F  H  *  L  S  L  L  S  T  L  P  L  Q  I  L  L  I  S  A  L :   M  K  T  G  P  Y  G  N  W  V  H  C  L  Q  D  *  S  H  F  T  P  Q  Q  S  H  W  T  N  H  G  M  F  *  G  L  V  I  I  Q  V  S  V  W  K  R  S  I  M  L  Q  L  S  T  L  M  G  I  *  S  H  G  L  I  L  Q  W  P  N  I  G  L  Y  G  R  S  M  W  I  M  K  M  S  T  C  R  G  V  I  L  V  F  K  Y  M  R  T  G  G  Y  L  L  V  G  F  S  K  L </first_frame>
            <second_frame>  Y  S  S  L  S  T  I  S  E  K  Q  A  L  Y  L  E  N  G  D  L  L  N  K  N  G  S  P  E  L  P  Y  G  H  R  H  R  N  T  V  H  L  Q  T  I  R  V  F  Y  H  C  R  C  F  A  F  I  S  S  L  F  S  L  H  F  L  C  R  S  F  *  S  R  R   : *  *  K  P  D  L  M  E  I  G  Y  T  A  S  R  I  N  H  I  L  L  H  N  K  A  T  G  Q  I  M  A  C  F  R  A  W  L  *  S  K  Y  Q  Y  G  R  D  Q  *  C  C  S  C  P  L  *  W  E  Y  E  A  M  A  *  Y  C  N  G  P  I  S  A  F  M  V  E  V  C  G  L  *  K  *  V  R  A  G  V  *  F  W  F  L  S  T  *  E  Q  V  D  I  C  L  S  G  S  A  S   </second_frame>
            <third_frame>   T  P  P  S  Q  P  *  V  K  S  K  H  Y  I  S  K  T  E  T  C  L  T  K  M  A  L  R  S  S  R  T  V  T  G  T  G  I  R  F  T  F  K  L  F  A  S  F  I  T  V  A  V  L  L  S  L  A  L  S  S  L  Y  T  S  S  A  D  P  S  D  L  G  V  :  N  E  N  R  T  L  W  K  L  G  T  L  P  P  G  L  I  T  F  Y  S  T  T  K  P  L  D  K  S  W  H  V  L  G  L  G  Y  N  P  S  I  S  M  E  E  I  N  N  A  A  V  V  H  F  N  G  N  M  K  P  W  L  D  I  A  M  A  Q  Y  R  P  L  W  S  K  Y  V  D  Y  E  N  E  Y  V  Q  G  C  N  F  G  F  *  V  H  E  N  R  W  I  F  A  C  R  V  Q  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16238" stop="16435"/>
                    <exon start="19254" stop="19529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSKHYISKTETCLTKMALRSSRTVTGTGIRFTFKLFASFITVAVLLSLALSSLYTSSADPSDLGVNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEINNAAVVHFNGNMKPWLDIAMAQYRPLWSKYVDYENEYVQGCNFGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24619" PGL_stop="20187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24619" e_stop="24444"/>
            <exon e_start="24331" e_stop="24245"/>
            <exon e_start="24162" e_stop="24025"/>
            <exon e_start="23352" e_stop="23064"/>
            <exon e_start="22994" e_stop="22759"/>
            <exon e_start="22535" e_stop="22370"/>
            <exon e_start="22267" e_stop="22146"/>
            <exon e_start="22026" e_stop="21961"/>
            <exon e_start="21117" e_stop="21051"/>
            <exon e_start="20803" e_stop="20187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24619" e_stop="24444" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="24443" i_stop="24332" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24331" e_stop="24245" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24162" e_stop="24025" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23352" e_stop="23064" e_length="289"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22994" e_stop="22759" e_length="236"/>
          </exon>
          <intron i_serial="5" don_prob="0.583" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22535" e_stop="22370" e_length="166"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22267" e_stop="22146" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.878">
            <gDNA_intron_boundary i_start="22145" i_stop="22027" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22026" e_stop="21961" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21117" e_stop="21051" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="20803" e_stop="20187" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24619" stop="24444"/>
              <exon start="24331" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24613" stop="24444"/>
              <exon start="24331" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24296" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23192" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22221" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20741" stop="20187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG : TGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT : GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA : GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA : TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT : GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG : CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG : CAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG : GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC : TTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGTGGATTCAGGAACGATGTTGGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTTGTCAAGAGCTATGATGTTTTCTCAAAAAGCTCTTTTTGCTAATCTTTTTTCTAGTTCAATTTCTTTTCTTTTTTTCTGGTTAATTGGATAGGTGGAGGAGGTAGGAATGATTTTTTTTTGAAAGTAGATTTCGTGTGTAGCATACGGGTGTCGGAGCCCCTAGCAAGAGATTATACTCATTCGTGGGCTTTTGCCTTTTTTGTATTGAATTATTGTTGGGGGCTTGTGGAAATTTATTTATTTAAACTTCGATT</gDNA_template>
            <first_frame> L  S  L  Y  S  R  L  F  F  E  I  H  H  S  L  Y  S  K  T  L  E  L  K  P  S  S  S  A  S  R  E  R  N  T  R  R  E  R  N  S  P  T  V  H  Q  A  F  S  L  S  T  Y  L  I  R  Y  K  S  S :   A  I  N  R  S  S  I  D  *  R  W  Q  R  K  Q  Q  *  Q  *  R  Q  *  H  Q  F  L  L  K  L :   L  R  M  L  L  C  S  N  T  I  I  Y  C  I  I  R  R  G  L  Y  S  G  F  T  R  I  *  A  S  L  D  V  L  K  R  M  D  P  W  V  S  L  R  Q  C  K :   Q  *  M  I  R  Y  S  H  S  T  M  E  I  S  E  Q  R  S  S  L  W  M  P  K  N  P  L  M  A  G  C  M  S  L  *  L  D  I  *  L  G  K  T  T  W  S  G  I  S  V  K  L  S  S  *  H  H  K  I  G  G  T  L  S  *  M  I  C  F  D  M  *  R  L  P  V  S  M  I  Q  S  R  F  Q  *  L  M  L  W  L  L  S  H  Q  S  K  :  L  L  Q  I  H  L  Q  H  H  R  I  T  F  L  S  K  A  L  H  Q  Q  R  K  L  T  W  E  K  F  T  T  H  L  R  M  V  M  C  L  L  L  R  R  K  C  L  C  L  R  S  S  M  K  S  K  M  A  L  K  W  *  R  N  L  T  T  K  L  G  K  F  L  R  S  H  M  L  Q  L :   S  C  I  S  R  K  V  L  Q  P  S  P  L  L  Q  H  L  L  L  G  S  L  *  Q  R  V  L  C  K  *  I  S  L  L  P  Q  Q  L  M  A  H  I  P  A  Q  R  P  L  I  T  *  M  T  Q  K  :  L  M  A  T  Q  S  I  *  K  A  C  L  *  V  Q  L  W  H  Y  L  R  M  S  S  R  S  L  G  Q  *  K  M  E  E  F  K  *  E  V  T  G :   N  R  D  F  V  L  D  S  W  N  L  K  W  K  V  L  C  K  K  Q  S  R :   L  L  Q  F  S  L  V  I  G  K  Q  W  S  R  K  R  G  L  P  I  L  D  :  L  M  P  E  V  V  V  G  F  N  L  E  G  A  V  D  S  G  T  M  L  E  E  E  G  E  E  T  I  *  V  A  G  V  M  V  E  M  I  S  M  E  E  M  S  S  I  T  G  V  G  I  V  G  V  H  Q  T  V  E  V  K  D  I  G  E  L  T  I  Q  V  G  E  *  V  V  V  V  E  C  L  M  E  Q  P  K  A  R  L  L  A  I  L  L  Q  L  E  E  *  *  L  S  I  I  Y  L  N  R  H  L  K  *  F  I  V  K  V  N  R  N  F  V  K  S  Y  D  V  F  S  K  S  S  F  C  *  S  F  F  *  F  N  F  F  S  F  F  L  V  N  W  I  G  G  G  G  R  N  D  F  F  L  K  V  D  F  V  C  S  I  R  V  S  E  P  L  A  R  D  Y  T  H  S  W  A  F  A  F  F  V  L  N  Y  C  W  G  L  V  E  I  Y  L  F  K  L  R   </first_frame>
            <second_frame>  S  L  S  T  R  A  S  F  S  R  S  T  T  L  S  T  A  K  P  *  N  S  N  L  P  P  P  H  L  E  R  E  T  H  E  E  R  E  T  H  R  L  Y  I  K  L  S  L  F  P  L  I  *  S  D  I  N  P   : V  L  *  T  G  V  R  L  I  D  D  G  S  G  S  S  S  S  S  S  G  S  S  T  S  F  C  S  S   : C  C  E  C  F  C  A  A  I  L  S  Y  I  A  S  F  A  G  A  C  I  Q  V  L  P  G  Y  K  Q  A  W  T  S  *  R  G  W  I  H  G  Y  H  Y  D  N  A   : S  N  K  *  *  D  T  L  T  Q  L  W  R  S  Q  S  R  D  Q  V  C  G  C  P  R  I  L  *  W  R  G  A  C  P  C  N  W  I  F  D  W  E  R  Q  L  G  P  E  F  L  S  N  F  L  P  S  T  T  R  *  G  V  L  C  L  E  *  Y  V  S  I  C  R  D  C  Q  S  A  *  Y  S  P  G  S  S  N  *  C  C  G  S  C  H  T  R  A  N :   C  C  R  S  T  Y  S  T  T  E  S  H  S  *  A  K  H  S  T  S  R  G  S  *  R  G  R  S  L  Q  P  I  *  E  W  *  C  A  Y  C  *  G  G  S  A  C  V  *  G  R  P  *  S  P  R  W  L  *  S  G  S  G  I  *  Q  Q  N  W  G  S  S  *  E  V  I  C  F  N   : C  H  A  S  Q  G  K  C  C  N  L  L  P  S  S  S  T  C  C  *  E  A  Y  D  K  E  C  C  A  S  E  S  A  C  C  H  N  N  *  W  P  I  F  Q  L  R  D  H  *  *  H  K  *  H  R  S :   *  W  L  L  N  L  Y  K  R  P  A  Y  E  C  N  C  G  I  T  C  G  *  V  Q  E  V  W  A  N  K  K  W  R  N  S  S  E  K  *  Q   : A  T  G  I  L  F  W  I  R  G  I  *  S  G  K  C  C  A  K  S  N  R   : G  F  S  S  S  H  W  *  S  A  S  S  G  R  G  K  E  V  Y  Q  F  S  T :   *  C  Q  R  W  W  *  V  S  I  W  K  G  R  W  I  Q  E  R  C  W  R  K  R  A  R  K  L  F  R  W  Q  G  L  W  S  R  *  F  P  W  K  K  *  V  Q  *  Q  G  W  E  S  W  G  F  I  K  P  W  R  *  R  I  S  A  S  *  Q  Y  R  W  A  N  E  S  W  W  W  N  V  *  W  N  S  Q  R  P  G  S  S  L  F  C  Y  S  L  K  S  S  S  L  V  *  F  I  *  I  D  I  *  N  D  L  L  L  R  *  T  E  I  L  S  R  A  M  M  F  S  Q  K  A  L  F  A  N  L  F  S  S  S  I  S  F  L  F  F  W  L  I  G  *  V  E  E  V  G  M  I  F  F  *  K  *  I  S  C  V  A  Y  G  C  R  S  P  *  Q  E  I  I  L  I  R  G  L  L  P  F  L  Y  *  I  I  V  G  G  L  W  K  F  I  Y  L  N  F  D  </second_frame>
            <third_frame>   L  S  L  L  A  P  L  F  R  D  P  P  L  S  L  Q  Q  N  P  R  T  Q  T  F  L  L  R  I  *  R  E  K  H  T  K  R  E  K  L  T  D  C  T  S  S  F  L  S  F  H  L  S  D  P  I  *  I  Q  :  C  Y  K  Q  E  F  D  *  L  T  M  A  A  E  A  A  V  A  V  A  A  V  A  P  V  S  A  Q  V  :  V  A  N  A  F  V  Q  Q  Y  Y  H  I  L  H  H  S  P  G  L  V  F  R  F  Y  Q  D  I  S  K  L  G  R  P  E  E  D  G  S  M  G  I  T  T  T  M  Q  :  A  I  N  D  K  I  L  S  L  N  Y  G  D  L  R  A  E  I  K  S  V  D  A  Q  E  S  F  N  G  G  V  H  V  L  V  T  G  Y  L  T  G  K  D  N  L  V  R  N  F  C  Q  T  F  F  L  A  P  Q  D  R  G  Y  F  V  L  N  D  M  F  R  Y  V  E  T  A  S  Q  H  D  T  V  Q  V  P  V  T  D  A  V  A  P  V  T  P  E  Q   : I  V  A  D  P  P  T  A  P  Q  N  H  I  P  E  Q  S  T  P  P  A  E  E  A  D  V  G  E  V  Y  N  P  S  E  N  G  D  V  L  I  V  E  E  E  V  P  V  S  E  V  V  H  E  V  Q  D  G  S  E  V  V  A  E  S  D  N  K  T  G  E  V  P  K  K  S  Y  A  S  I  :  V  M  H  L  K  E  S  A  A  T  F  S  P  P  P  A  P  A  A  R  K  P  M  T  K  S  V  V  Q  V  N  Q  P  A  A  T  T  T  D  G  P  Y  S  S  S  E  T  I  D  N  I  N  D  T  E   : A  D  G  Y  S  I  Y  I  K  G  L  P  M  S  A  T  V  A  L  L  A  D  E  F  K  K  F  G  P  I  K  N  G  G  I  Q  V  R  S  N  R  :  Q  Q  G  F  C  F  G  F  V  E  F  E  V  E  S  A  V  Q  K  A  I  E  :  A  S  P  V  L  I  G  D  R  Q  A  V  V  E  E  K  R  S  T  N  S  R   : L  N  A  R  G  G  G  R  F  Q  S  G  R  G  G  G  F  R  N  D  V  G  G  R  G  R  G  N  Y  L  G  G  R  G  Y  G  R  D  D  F  H  G  R  N  E  F  N  N  R  G  G  N  R  G  G  S  S  N  R  G  G  E  G  Y  R  R  A  D  N  T  G  G  R  M  S  R  G  G  G  M  S  N  G  T  A  K  G  P  A  P  R  Y  S  A  T  A  *  R  V  V  A  *  Y  N  L  F  E  S  T  F  K  M  I  Y  C  *  G  E  Q  K  F  C  Q  E  L  *  C  F  L  K  K  L  F  L  L  I  F  F  L  V  Q  F  L  F  F  F  S  G  *  L  D  R  W  R  R  *  E  *  F  F  F  E  S  R  F  R  V  *  H  T  G  V  G  A  P  S  K  R  L  Y  S  F  V  G  F  C  L  F  C  I  E  L  L  L  G  A  C  G  N  L  F  I  *  T  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24307" stop="24245"/>
                    <exon start="24162" stop="24025"/>
                    <exon start="23352" stop="23064"/>
                    <exon start="22994" stop="22759"/>
                    <exon start="22535" stop="22370"/>
                    <exon start="22267" stop="22146"/>
                    <exon start="22026" stop="21961"/>
                    <exon start="21117" stop="21051"/>
                    <exon start="20803" stop="20514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMAAEAAVAVAAVAPVSAQVVANAFVQQYYHILHHSPGLVFRFYQDISKLGRPEEDGSMGITTTMQAINDKILSLNYGDLRAEIKSVDAQESFNGGVHVLVTGYLTGKDNLVRNFCQTFFLAPQDRGYFVLNDMFRYVETASQHDTVQVPVTDAVAPVTPEQIVADPPTAPQNHIPEQSTPPAEEADVGEVYNPSENGDVLIVEEEVPVSEVVHEVQDGSEVVAESDNKTGEVPKKSYASIVMHLKESAATFSPPPAPAARKPMTKSVVQVNQPAATTTDGPYSSSETIDNINDTEADGYSIYIKGLPMSATVALLADEFKKFGPIKNGGIQVRSNRQQGFCFGFVEFEVESAVQKAIEASPVLIGDRQAVVEEKRSTNSRLNARGGGRFQSGRGGGFRNDVGGRGRGNYLGGRGYGRDDFHGRNEFNNRGGNRGGSSNRGGEGYRRADNTGGRMSRGGGMSNGTAKGPAPRYSATA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24619" stop="24444"/>
                    <exon start="24331" stop="24304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLYSRLFFEIHHSLYSKTLELKPSSSASRERNTRRERNSPTVHQAFSLSTYLIRYKSSAINRSSID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20386" stop="20189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFFSFFLVNWIGGGGRNDFFLKVDFVCSIRVSEPLARDYTHSWAFAFFVLNYCWGLVEIYLFKLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24615" e_stop="24444"/>
            <exon e_start="24319" e_stop="24245"/>
            <exon e_start="24162" e_stop="24025"/>
            <exon e_start="23352" e_stop="23064"/>
            <exon e_start="22994" e_stop="22759"/>
            <exon e_start="22535" e_stop="22370"/>
            <exon e_start="22267" e_stop="22146"/>
            <exon e_start="22026" e_stop="21961"/>
            <exon e_start="21117" e_stop="21051"/>
            <exon e_start="20803" e_stop="20187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24615" e_stop="24444" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24443" i_stop="24320" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24319" e_stop="24245" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24162" e_stop="24025" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23352" e_stop="23064" e_length="289"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22994" e_stop="22759" e_length="236"/>
          </exon>
          <intron i_serial="5" don_prob="0.583" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22535" e_stop="22370" e_length="166"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22267" e_stop="22146" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.878">
            <gDNA_intron_boundary i_start="22145" i_stop="22027" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22026" e_stop="21961" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21117" e_stop="21051" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="20803" e_stop="20187" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24615" stop="24444"/>
              <exon start="24319" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24296" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23192" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22221" stop="22146"/>
              <exon start="22026" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20741" stop="20187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG : GAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT : GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA : GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA : TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT : GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG : CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG : CAACAGGGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG : GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC : TTAATGCCAGAGGTGGTGGTAGGTTTCAATCTGGAAGGGGCGGTGGATTCAGGAACGATGTTGGAGGAAGAGGGCGAGGAAACTATTTAGGTGGCAGGGGTTATGGTCGAGATGATTTCCATGGAAGAAATGAGTTCAATAACAGGGGTGGGAATCGTGGGGGTTCATCAAACCGTGGAGGTGAAGGATATCGGCGAGCTGACAATACAGGTGGGCGAATGAGTCGTGGTGGTGGAATGTCTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAATTTATTTGAATCGACATTTAAAATGATTTATTGTTAAGGTGAACAGAAATTTTGTCAAGAGCTATGATGTTTTCTCAAAAAGCTCTTTTTGCTAATCTTTTTTCTAGTTCAATTTCTTTTCTTTTTTTCTGGTTAATTGGATAGGTGGAGGAGGTAGGAATGATTTTTTTTTGAAAGTAGATTTCGTGTGTAGCATACGGGTGTCGGAGCCCCTAGCAAGAGATTATACTCATTCGTGGGCTTTTGCCTTTTTTGTATTGAATTATTGTTGGGGGCTTGTGGAAATTTATTTATTTAAACTTCGATT</gDNA_template>
            <first_frame> L  S  T  R  A  S  F  S  R  S  T  T  L  S  T  A  K  P  *  N  S  N  L  P  P  P  H  L  E  R  E  T  H  E  E  R  E  T  H  R  L  Y  I  K  L  S  L  F  P  L  I  *  S  D  I  N  P   : G  V  R  L  I  D  D  G  S  G  S  S  S  S  S  S  G  S  S  T  S  F  C  S  S   : C  C  E  C  F  C  A  A  I  L  S  Y  I  A  S  F  A  G  A  C  I  Q  V  L  P  G  Y  K  Q  A  W  T  S  *  R  G  W  I  H  G  Y  H  Y  D  N  A   : S  N  K  *  *  D  T  L  T  Q  L  W  R  S  Q  S  R  D  Q  V  C  G  C  P  R  I  L  *  W  R  G  A  C  P  C  N  W  I  F  D  W  E  R  Q  L  G  P  E  F  L  S  N  F  L  P  S  T  T  R  *  G  V  L  C  L  E  *  Y  V  S  I  C  R  D  C  Q  S  A  *  Y  S  P  G  S  S  N  *  C  C  G  S  C  H  T  R  A  N :   C  C  R  S  T  Y  S  T  T  E  S  H  S  *  A  K  H  S  T  S  R  G  S  *  R  G  R  S  L  Q  P  I  *  E  W  *  C  A  Y  C  *  G  G  S  A  C  V  *  G  R  P  *  S  P  R  W  L  *  S  G  S  G  I  *  Q  Q  N  W  G  S  S  *  E  V  I  C  F  N   : C  H  A  S  Q  G  K  C  C  N  L  L  P  S  S  S  T  C  C  *  E  A  Y  D  K  E  C  C  A  S  E  S  A  C  C  H  N  N  *  W  P  I  F  Q  L  R  D  H  *  *  H  K  *  H  R  S :   *  W  L  L  N  L  Y  K  R  P  A  Y  E  C  N  C  G  I  T  C  G  *  V  Q  E  V  W  A  N  K  K  W  R  N  S  S  E  K  *  Q   : A  T  G  I  L  F  W  I  R  G  I  *  S  G  K  C  C  A  K  S  N  R   : G  F  S  S  S  H  W  *  S  A  S  S  G  R  G  K  E  V  Y  Q  F  S  T :   *  C  Q  R  W  W  *  V  S  I  W  K  G  R  W  I  Q  E  R  C  W  R  K  R  A  R  K  L  F  R  W  Q  G  L  W  S  R  *  F  P  W  K  K  *  V  Q  *  Q  G  W  E  S  W  G  F  I  K  P  W  R  *  R  I  S  A  S  *  Q  Y  R  W  A  N  E  S  W  W  W  N  V  *  W  N  S  Q  R  P  G  S  S  L  F  C  Y  S  L  K  S  S  S  L  V  *  F  I  *  I  D  I  *  N  D  L  L  L  R  *  T  E  I  L  S  R  A  M  M  F  S  Q  K  A  L  F  A  N  L  F  S  S  S  I  S  F  L  F  F  W  L  I  G  *  V  E  E  V  G  M  I  F  F  *  K  *  I  S  C  V  A  Y  G  C  R  S  P  *  Q  E  I  I  L  I  R  G  L  L  P  F  L  Y  *  I  I  V  G  G  L  W  K  F  I  Y  L  N  F  D  </first_frame>
            <second_frame>  S  L  L  A  P  L  F  R  D  P  P  L  S  L  Q  Q  N  P  R  T  Q  T  F  L  L  R  I  *  R  E  K  H  T  K  R  E  K  L  T  D  C  T  S  S  F  L  S  F  H  L  S  D  P  I  *  I  Q  :  E  F  D  *  L  T  M  A  A  E  A  A  V  A  V  A  A  V  A  P  V  S  A  Q  V  :  V  A  N  A  F  V  Q  Q  Y  Y  H  I  L  H  H  S  P  G  L  V  F  R  F  Y  Q  D  I  S  K  L  G  R  P  E  E  D  G  S  M  G  I  T  T  T  M  Q  :  A  I  N  D  K  I  L  S  L  N  Y  G  D  L  R  A  E  I  K  S  V  D  A  Q  E  S  F  N  G  G  V  H  V  L  V  T  G  Y  L  T  G  K  D  N  L  V  R  N  F  C  Q  T  F  F  L  A  P  Q  D  R  G  Y  F  V  L  N  D  M  F  R  Y  V  E  T  A  S  Q  H  D  T  V  Q  V  P  V  T  D  A  V  A  P  V  T  P  E  Q   : I  V  A  D  P  P  T  A  P  Q  N  H  I  P  E  Q  S  T  P  P  A  E  E  A  D  V  G  E  V  Y  N  P  S  E  N  G  D  V  L  I  V  E  E  E  V  P  V  S  E  V  V  H  E  V  Q  D  G  S  E  V  V  A  E  S  D  N  K  T  G  E  V  P  K  K  S  Y  A  S  I  :  V  M  H  L  K  E  S  A  A  T  F  S  P  P  P  A  P  A  A  R  K  P  M  T  K  S  V  V  Q  V  N  Q  P  A  A  T  T  T  D  G  P  Y  S  S  S  E  T  I  D  N  I  N  D  T  E   : A  D  G  Y  S  I  Y  I  K  G  L  P  M  S  A  T  V  A  L  L  A  D  E  F  K  K  F  G  P  I  K  N  G  G  I  Q  V  R  S  N  R  :  Q  Q  G  F  C  F  G  F  V  E  F  E  V  E  S  A  V  Q  K  A  I  E  :  A  S  P  V  L  I  G  D  R  Q  A  V  V  E  E  K  R  S  T  N  S  R   : L  N  A  R  G  G  G  R  F  Q  S  G  R  G  G  G  F  R  N  D  V  G  G  R  G  R  G  N  Y  L  G  G  R  G  Y  G  R  D  D  F  H  G  R  N  E  F  N  N  R  G  G  N  R  G  G  S  S  N  R  G  G  E  G  Y  R  R  A  D  N  T  G  G  R  M  S  R  G  G  G  M  S  N  G  T  A  K  G  P  A  P  R  Y  S  A  T  A  *  R  V  V  A  *  Y  N  L  F  E  S  T  F  K  M  I  Y  C  *  G  E  Q  K  F  C  Q  E  L  *  C  F  L  K  K  L  F  L  L  I  F  F  L  V  Q  F  L  F  F  F  S  G  *  L  D  R  W  R  R  *  E  *  F  F  F  E  S  R  F  R  V  *  H  T  G  V  G  A  P  S  K  R  L  Y  S  F  V  G  F  C  L  F  C  I  E  L  L  L  G  A  C  G  N  L  F  I  *  T  S  I </second_frame>
            <third_frame>   L  Y  S  R  L  F  F  E  I  H  H  S  L  Y  S  K  T  L  E  L  K  P  S  S  S  A  S  R  E  R  N  T  R  R  E  R  N  S  P  T  V  H  Q  A  F  S  L  S  T  Y  L  I  R  Y  K  S  R :   S  S  I  D  *  R  W  Q  R  K  Q  Q  *  Q  *  R  Q  *  H  Q  F  L  L  K  L :   L  R  M  L  L  C  S  N  T  I  I  Y  C  I  I  R  R  G  L  Y  S  G  F  T  R  I  *  A  S  L  D  V  L  K  R  M  D  P  W  V  S  L  R  Q  C  K :   Q  *  M  I  R  Y  S  H  S  T  M  E  I  S  E  Q  R  S  S  L  W  M  P  K  N  P  L  M  A  G  C  M  S  L  *  L  D  I  *  L  G  K  T  T  W  S  G  I  S  V  K  L  S  S  *  H  H  K  I  G  G  T  L  S  *  M  I  C  F  D  M  *  R  L  P  V  S  M  I  Q  S  R  F  Q  *  L  M  L  W  L  L  S  H  Q  S  K  :  L  L  Q  I  H  L  Q  H  H  R  I  T  F  L  S  K  A  L  H  Q  Q  R  K  L  T  W  E  K  F  T  T  H  L  R  M  V  M  C  L  L  L  R  R  K  C  L  C  L  R  S  S  M  K  S  K  M  A  L  K  W  *  R  N  L  T  T  K  L  G  K  F  L  R  S  H  M  L  Q  L :   S  C  I  S  R  K  V  L  Q  P  S  P  L  L  Q  H  L  L  L  G  S  L  *  Q  R  V  L  C  K  *  I  S  L  L  P  Q  Q  L  M  A  H  I  P  A  Q  R  P  L  I  T  *  M  T  Q  K  :  L  M  A  T  Q  S  I  *  K  A  C  L  *  V  Q  L  W  H  Y  L  R  M  S  S  R  S  L  G  Q  *  K  M  E  E  F  K  *  E  V  T  G :   N  R  D  F  V  L  D  S  W  N  L  K  W  K  V  L  C  K  K  Q  S  R :   L  L  Q  F  S  L  V  I  G  K  Q  W  S  R  K  R  G  L  P  I  L  D  :  L  M  P  E  V  V  V  G  F  N  L  E  G  A  V  D  S  G  T  M  L  E  E  E  G  E  E  T  I  *  V  A  G  V  M  V  E  M  I  S  M  E  E  M  S  S  I  T  G  V  G  I  V  G  V  H  Q  T  V  E  V  K  D  I  G  E  L  T  I  Q  V  G  E  *  V  V  V  V  E  C  L  M  E  Q  P  K  A  R  L  L  A  I  L  L  Q  L  E  E  *  *  L  S  I  I  Y  L  N  R  H  L  K  *  F  I  V  K  V  N  R  N  F  V  K  S  Y  D  V  F  S  K  S  S  F  C  *  S  F  F  *  F  N  F  F  S  F  F  L  V  N  W  I  G  G  G  G  R  N  D  F  F  L  K  V  D  F  V  C  S  I  R  V  S  E  P  L  A  R  D  Y  T  H  S  W  A  F  A  F  F  V  L  N  Y  C  W  G  L  V  E  I  Y  L  F  K  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24307" stop="24245"/>
                    <exon start="24162" stop="24025"/>
                    <exon start="23352" stop="23064"/>
                    <exon start="22994" stop="22759"/>
                    <exon start="22535" stop="22370"/>
                    <exon start="22267" stop="22146"/>
                    <exon start="22026" stop="21961"/>
                    <exon start="21117" stop="21051"/>
                    <exon start="20803" stop="20514"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMAAEAAVAVAAVAPVSAQVVANAFVQQYYHILHHSPGLVFRFYQDISKLGRPEEDGSMGITTTMQAINDKILSLNYGDLRAEIKSVDAQESFNGGVHVLVTGYLTGKDNLVRNFCQTFFLAPQDRGYFVLNDMFRYVETASQHDTVQVPVTDAVAPVTPEQIVADPPTAPQNHIPEQSTPPAEEADVGEVYNPSENGDVLIVEEEVPVSEVVHEVQDGSEVVAESDNKTGEVPKKSYASIVMHLKESAATFSPPPAPAARKPMTKSVVQVNQPAATTTDGPYSSSETIDNINDTEADGYSIYIKGLPMSATVALLADEFKKFGPIKNGGIQVRSNRQQGFCFGFVEFEVESAVQKAIEASPVLIGDRQAVVEEKRSTNSRLNARGGGRFQSGRGGGFRNDVGGRGRGNYLGGRGYGRDDFHGRNEFNNRGGNRGGSSNRGGEGYRRADNTGGRMSRGGGMSNGTAKGPAPRYSATA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20386" stop="20189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFFSFFLVNWIGGGGRNDFFLKVDFVCSIRVSEPLARDYTHSWAFAFFVLNYCWGLVEIYLFKLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24619" e_stop="24444"/>
            <exon e_start="24331" e_stop="24245"/>
            <exon e_start="24162" e_stop="24025"/>
            <exon e_start="23352" e_stop="23064"/>
            <exon e_start="22994" e_stop="22759"/>
            <exon e_start="22535" e_stop="22370"/>
            <exon e_start="22267" e_stop="22146"/>
            <exon e_start="22020" e_stop="21961"/>
            <exon e_start="21117" e_stop="21051"/>
            <exon e_start="20803" e_stop="20784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.504" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24619" e_stop="24444" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="24443" i_stop="24332" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24331" e_stop="24245" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24244" i_stop="24163" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24162" e_stop="24025" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24024" i_stop="23353" i_length="672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23352" e_stop="23064" e_length="289"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23063" i_stop="22995" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22994" e_stop="22759" e_length="236"/>
          </exon>
          <intron i_serial="5" don_prob="0.583" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22758" i_stop="22536" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22535" e_stop="22370" e_length="166"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="22369" i_stop="22268" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22267" e_stop="22146" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.504">
            <gDNA_intron_boundary i_start="22145" i_stop="22021" i_length="125"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22020" e_stop="21961" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21960" i_stop="21118" i_length="843"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21117" e_stop="21051" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21050" i_stop="20804" i_length="247"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20803" e_stop="20784" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24619" stop="24444"/>
              <exon start="24331" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24613" stop="24444"/>
              <exon start="24331" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22020" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24296" stop="24245"/>
              <exon start="24162" stop="24025"/>
              <exon start="23352" stop="23064"/>
              <exon start="22994" stop="22939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23192" stop="23064"/>
              <exon start="22994" stop="22759"/>
              <exon start="22535" stop="22370"/>
              <exon start="22267" stop="22146"/>
              <exon start="22020" stop="21961"/>
              <exon start="21117" stop="21051"/>
              <exon start="20803" stop="20784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTCTACTCGCGCCTCTTTTTCGAGATCCACCACTCTCTCTACAGCAAAACCCTAGAACTCAAACCTTCCTCCTCCGCATCTAGAGAGAGAAACACACGAAGAGAGAGAAACTCACCGACTGTACATCAAGCTTTCTCTCTTTCCACTTATCTGATCCGATATAAATCCAG : TGCTATAAACAGGAGTTCGATTGATTGACGATGGCAGCGGAAGCAGCAGTAGCAGTAGCGGCAGTAGCACCAGTTTCTGCTCAAGTT : GTTGCGAATGCTTTTGTGCAGCAATACTATCATATATTGCATCATTCGCCGGGGCTTGTATTCAGGTTTTACCAGGATATAAGCAAGCTTGGACGTCCTGAAGAGGATGGATCCATGGGTATCACTACGACAATGCAA : GCAATAAATGATAAGATACTCTCACTCAACTATGGAGATCTCAGAGCAGAGATCAAGTCTGTGGATGCCCAAGAATCCTTTAATGGCGGGGTGCATGTCCTTGTAACTGGATATTTGACTGGGAAAGACAACTTGGTCCGGAATTTCTGTCAAACTTTCTTCCTAGCACCACAAGATAGGGGGTACTTTGTCTTGAATGATATGTTTCGATATGTAGAGACTGCCAGTCAGCATGATACAGTCCAGGTTCCAGTAACTGATGCTGTGGCTCCTGTCACACCAGAGCAAA : TTGTTGCAGATCCACCTACAGCACCACAGAATCACATTCCTGAGCAAAGCACTCCACCAGCAGAGGAAGCTGACGTGGGAGAAGTTTACAACCCATCTGAGAATGGTGATGTGCTTATTGTTGAGGAGGAAGTGCCTGTGTCTGAGGTCGTCCATGAAGTCCAAGATGGCTCTGAAGTGGTAGCGGAATCTGACAACAAAACTGGGGAAGTTCCTAAGAAGTCATATGCTTCAATT : GTCATGCATCTCAAGGAAAGTGCTGCAACCTTCTCCCCTCCTCCAGCACCTGCTGCTAGGAAGCCTATGACAAAGAGTGTTGTGCAAGTGAATCAGCCTGCTGCCACAACAACTGATGGCCCATATTCCAGCTCAGAGACCATTGATAACATAAATGACACAGAAG : CTGATGGCTACTCAATCTATATAAAAGGCCTGCCTATGAGTGCAACTGTGGCATTACTTGCGGATGAGTTCAAGAAGTTTGGGCCAATAAAAAATGGAGGAATTCAAGTGAGAAGTAACAGG : GGATTTTGTTTTGGATTCGTGGAATTTGAAGTGGAAAGTGCTGTGCAAAAAGCAATCGAG : GCTTCTCCAGTTCTCATTGGTGATCGGCAAGCAGTGGTCGAGGAAAAGAGGTCTACCAATTCTCGAC : TTAATGCCAGAGGTGGTGGT</gDNA_template>
            <first_frame> L  S  L  Y  S  R  L  F  F  E  I  H  H  S  L  Y  S  K  T  L  E  L  K  P  S  S  S  A  S  R  E  R  N  T  R  R  E  R  N  S  P  T  V  H  Q  A  F  S  L  S  T  Y  L  I  R  Y  K  S  S :   A  I  N  R  S  S  I  D  *  R  W  Q  R  K  Q  Q  *  Q  *  R  Q  *  H  Q  F  L  L  K  L :   L  R  M  L  L  C  S  N  T  I  I  Y  C  I  I  R  R  G  L  Y  S  G  F  T  R  I  *  A  S  L  D  V  L  K  R  M  D  P  W  V  S  L  R  Q  C  K :   Q  *  M  I  R  Y  S  H  S  T  M  E  I  S  E  Q  R  S  S  L  W  M  P  K  N  P  L  M  A  G  C  M  S  L  *  L  D  I  *  L  G  K  T  T  W  S  G  I  S  V  K  L  S  S  *  H  H  K  I  G  G  T  L  S  *  M  I  C  F  D  M  *  R  L  P  V  S  M  I  Q  S  R  F  Q  *  L  M  L  W  L  L  S  H  Q  S  K  :  L  L  Q  I  H  L  Q  H  H  R  I  T  F  L  S  K  A  L  H  Q  Q  R  K  L  T  W  E  K  F  T  T  H  L  R  M  V  M  C  L  L  L  R  R  K  C  L  C  L  R  S  S  M  K  S  K  M  A  L  K  W  *  R  N  L  T  T  K  L  G  K  F  L  R  S  H  M  L  Q  L :   S  C  I  S  R  K  V  L  Q  P  S  P  L  L  Q  H  L  L  L  G  S  L  *  Q  R  V  L  C  K  *  I  S  L  L  P  Q  Q  L  M  A  H  I  P  A  Q  R  P  L  I  T  *  M  T  Q  K  :  L  M  A  T  Q  S  I  *  K  A  C  L  *  V  Q  L  W  H  Y  L  R  M  S  S  R  S  L  G  Q  *  K  M  E  E  F  K  *  E  V  T  G :   D  F  V  L  D  S  W  N  L  K  W  K  V  L  C  K  K  Q  S  R :   L  L  Q  F  S  L  V  I  G  K  Q  W  S  R  K  R  G  L  P  I  L  D  :  L  M  P  E  V  V   </first_frame>
            <second_frame>  S  L  S  T  R  A  S  F  S  R  S  T  T  L  S  T  A  K  P  *  N  S  N  L  P  P  P  H  L  E  R  E  T  H  E  E  R  E  T  H  R  L  Y  I  K  L  S  L  F  P  L  I  *  S  D  I  N  P   : V  L  *  T  G  V  R  L  I  D  D  G  S  G  S  S  S  S  S  S  G  S  S  T  S  F  C  S  S   : C  C  E  C  F  C  A  A  I  L  S  Y  I  A  S  F  A  G  A  C  I  Q  V  L  P  G  Y  K  Q  A  W  T  S  *  R  G  W  I  H  G  Y  H  Y  D  N  A   : S  N  K  *  *  D  T  L  T  Q  L  W  R  S  Q  S  R  D  Q  V  C  G  C  P  R  I  L  *  W  R  G  A  C  P  C  N  W  I  F  D  W  E  R  Q  L  G  P  E  F  L  S  N  F  L  P  S  T  T  R  *  G  V  L  C  L  E  *  Y  V  S  I  C  R  D  C  Q  S  A  *  Y  S  P  G  S  S  N  *  C  C  G  S  C  H  T  R  A  N :   C  C  R  S  T  Y  S  T  T  E  S  H  S  *  A  K  H  S  T  S  R  G  S  *  R  G  R  S  L  Q  P  I  *  E  W  *  C  A  Y  C  *  G  G  S  A  C  V  *  G  R  P  *  S  P  R  W  L  *  S  G  S  G  I  *  Q  Q  N  W  G  S  S  *  E  V  I  C  F  N   : C  H  A  S  Q  G  K  C  C  N  L  L  P  S  S  S  T  C  C  *  E  A  Y  D  K  E  C  C  A  S  E  S  A  C  C  H  N  N  *  W  P  I  F  Q  L  R  D  H  *  *  H  K  *  H  R  S :   *  W  L  L  N  L  Y  K  R  P  A  Y  E  C  N  C  G  I  T  C  G  *  V  Q  E  V  W  A  N  K  K  W  R  N  S  S  E  K  *  Q   : G  I  L  F  W  I  R  G  I  *  S  G  K  C  C  A  K  S  N  R   : G  F  S  S  S  H  W  *  S  A  S  S  G  R  G  K  E  V  Y  Q  F  S  T :   *  C  Q  R  W  W  </second_frame>
            <third_frame>   L  S  L  L  A  P  L  F  R  D  P  P  L  S  L  Q  Q  N  P  R  T  Q  T  F  L  L  R  I  *  R  E  K  H  T  K  R  E  K  L  T  D  C  T  S  S  F  L  S  F  H  L  S  D  P  I  *  I  Q  :  C  Y  K  Q  E  F  D  *  L  T  M  A  A  E  A  A  V  A  V  A  A  V  A  P  V  S  A  Q  V  :  V  A  N  A  F  V  Q  Q  Y  Y  H  I  L  H  H  S  P  G  L  V  F  R  F  Y  Q  D  I  S  K  L  G  R  P  E  E  D  G  S  M  G  I  T  T  T  M  Q  :  A  I  N  D  K  I  L  S  L  N  Y  G  D  L  R  A  E  I  K  S  V  D  A  Q  E  S  F  N  G  G  V  H  V  L  V  T  G  Y  L  T  G  K  D  N  L  V  R  N  F  C  Q  T  F  F  L  A  P  Q  D  R  G  Y  F  V  L  N  D  M  F  R  Y  V  E  T  A  S  Q  H  D  T  V  Q  V  P  V  T  D  A  V  A  P  V  T  P  E  Q   : I  V  A  D  P  P  T  A  P  Q  N  H  I  P  E  Q  S  T  P  P  A  E  E  A  D  V  G  E  V  Y  N  P  S  E  N  G  D  V  L  I  V  E  E  E  V  P  V  S  E  V  V  H  E  V  Q  D  G  S  E  V  V  A  E  S  D  N  K  T  G  E  V  P  K  K  S  Y  A  S  I  :  V  M  H  L  K  E  S  A  A  T  F  S  P  P  P  A  P  A  A  R  K  P  M  T  K  S  V  V  Q  V  N  Q  P  A  A  T  T  T  D  G  P  Y  S  S  S  E  T  I  D  N  I  N  D  T  E   : A  D  G  Y  S  I  Y  I  K  G  L  P  M  S  A  T  V  A  L  L  A  D  E  F  K  K  F  G  P  I  K  N  G  G  I  Q  V  R  S  N  R  :  G  F  C  F  G  F  V  E  F  E  V  E  S  A  V  Q  K  A  I  E  :  A  S  P  V  L  I  G  D  R  Q  A  V  V  E  E  K  R  S  T  N  S  R   : L  N  A  R  G  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24307" stop="24245"/>
                    <exon start="24162" stop="24025"/>
                    <exon start="23352" stop="23064"/>
                    <exon start="22994" stop="22759"/>
                    <exon start="22535" stop="22370"/>
                    <exon start="22267" stop="22146"/>
                    <exon start="22020" stop="21961"/>
                    <exon start="21117" stop="21051"/>
                    <exon start="20803" stop="20784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMAAEAAVAVAAVAPVSAQVVANAFVQQYYHILHHSPGLVFRFYQDISKLGRPEEDGSMGITTTMQAINDKILSLNYGDLRAEIKSVDAQESFNGGVHVLVTGYLTGKDNLVRNFCQTFFLAPQDRGYFVLNDMFRYVETASQHDTVQVPVTDAVAPVTPEQIVADPPTAPQNHIPEQSTPPAEEADVGEVYNPSENGDVLIVEEEVPVSEVVHEVQDGSEVVAESDNKTGEVPKKSYASIVMHLKESAATFSPPPAPAARKPMTKSVVQVNQPAATTTDGPYSSSETIDNINDTEADGYSIYIKGLPMSATVALLADEFKKFGPIKNGGIQVRSNRGFCFGFVEFEVESAVQKAIEASPVLIGDRQAVVEEKRSTNSRLNARGGG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24619" stop="24444"/>
                    <exon start="24331" stop="24304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLYSRLFFEIHHSLYSKTLELKPSSSASRERNTRRERNSPTVHQAFSLSTYLIRYKSSAINRSSID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25260" PGL_stop="26001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25260" e_stop="26001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25260" e_stop="26001" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25260" stop="26001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAATGAATACAGCAGTGATGGAGAGACGACAATGTACTCTGCGGAAACTGCTGAAAGCAGAAACTATCCAAGTCCTAAAGGAGGAAGGTTTCATCAAGTAGGAAGAAGCCAAAGTTGTGTTAACTACAATAGATGGGGGCCGGTTTCAAAAAACTCAGCAGCTCGTAGGGCTAACCAAGAACAGAAGAGGAACATTATGCAAGGAAGAAAGGTACACTCCCAAGGTACAACTTCACATAGGAGTAATGACTATTACAGCCCGACAGTATCTTCAATCATGAAGAAACGGAACAACATGGAGGCACAAATCAGACCACCACGTCTAAGTGCTGGAAACTCATCACCAAGATGGATGTTCTGATTGATAAATTCTGAAAAAAGAACTCATTCTTTATACCACACTCTCCTTTTTTTGAGCTTATACTGAGACTTCATTGCAAAGAAATTAAGAAAGCTGGAGAAAACTCGAGCGAAGGCAGCTTACTGATTTTCGATAGCAGGTGCTACAGGTAGTTGTTCTTCCACTGGAACTTCAATGACATTCTGTGGACTTTATGTTGGAGAAAAGATCTCAGAAGCATCTTCAACAGTCCCAACATTTTCACCAGTTAAGGATTGGCTAGTAACTGCTGCTTATCAGCAAAATAGATGAATGCAACATAGAATTCAAGTGTGACAGAAAGTGAAACCAAAGCAAATGTTCGATACTGTGTTCTCTGAGATAAATAATACCCTGGAA</gDNA_template>
            <first_frame> S  K  *  I  Q  Q  *  W  R  D  D  N  V  L  C  G  N  C  *  K  Q  K  L  S  K  S  *  R  R  K  V  S  S  S  R  K  K  P  K  L  C  *  L  Q  *  M  G  A  G  F  K  K  L  S  S  S  *  G  *  P  R  T  E  E  E  H  Y  A  R  K  K  G  T  L  P  R  Y  N  F  T  *  E  *  *  L  L  Q  P  D  S  I  F  N  H  E  E  T  E  Q  H  G  G  T  N  Q  T  T  T  S  K  C  W  K  L  I  T  K  M  D  V  L  I  D  K  F  *  K  K  N  S  F  F  I  P  H  S  P  F  F  E  L  I  L  R  L  H  C  K  E  I  K  K  A  G  E  N  S  S  E  G  S  L  L  I  F  D  S  R  C  Y  R  *  L  F  F  H  W  N  F  N  D  I  L  W  T  L  C  W  R  K  D  L  R  S  I  F  N  S  P  N  I  F  T  S  *  G  L  A  S  N  C  C  L  S  A  K  *  M  N  A  T  *  N  S  S  V  T  E  S  E  T  K  A  N  V  R  Y  C  V  L  *  D  K  *  Y  P  G  </first_frame>
            <second_frame>  Q  N  E  Y  S  S  D  G  E  T  T  M  Y  S  A  E  T  A  E  S  R  N  Y  P  S  P  K  G  G  R  F  H  Q  V  G  R  S  Q  S  C  V  N  Y  N  R  W  G  P  V  S  K  N  S  A  A  R  R  A  N  Q  E  Q  K  R  N  I  M  Q  G  R  K  V  H  S  Q  G  T  T  S  H  R  S  N  D  Y  Y  S  P  T  V  S  S  I  M  K  K  R  N  N  M  E  A  Q  I  R  P  P  R  L  S  A  G  N  S  S  P  R  W  M  F  *  L  I  N  S  E  K  R  T  H  S  L  Y  H  T  L  L  F  L  S  L  Y  *  D  F  I  A  K  K  L  R  K  L  E  K  T  R  A  K  A  A  Y  *  F  S  I  A  G  A  T  G  S  C  S  S  T  G  T  S  M  T  F  C  G  L  Y  V  G  E  K  I  S  E  A  S  S  T  V  P  T  F  S  P  V  K  D  W  L  V  T  A  A  Y  Q  Q  N  R  *  M  Q  H  R  I  Q  V  *  Q  K  V  K  P  K  Q  M  F  D  T  V  F  S  E  I  N  N  T  L  E </second_frame>
            <third_frame>   K  M  N  T  A  V  M  E  R  R  Q  C  T  L  R  K  L  L  K  A  E  T  I  Q  V  L  K  E  E  G  F  I  K  *  E  E  A  K  V  V  L  T  T  I  D  G  G  R  F  Q  K  T  Q  Q  L  V  G  L  T  K  N  R  R  G  T  L  C  K  E  E  R  Y  T  P  K  V  Q  L  H  I  G  V  M  T  I  T  A  R  Q  Y  L  Q  S  *  R  N  G  T  T  W  R  H  K  S  D  H  H  V  *  V  L  E  T  H  H  Q  D  G  C  S  D  *  *  I  L  K  K  E  L  I  L  Y  T  T  L  S  F  F  *  A  Y  T  E  T  S  L  Q  R  N  *  E  S  W  R  K  L  E  R  R  Q  L  T  D  F  R  *  Q  V  L  Q  V  V  V  L  P  L  E  L  Q  *  H  S  V  D  F  M  L  E  K  R  S  Q  K  H  L  Q  Q  S  Q  H  F  H  Q  L  R  I  G  *  *  L  L  L  I  S  K  I  D  E  C  N  I  E  F  K  C  D  R  K  *  N  Q  S  K  C  S  I  L  C  S  L  R  *  I  I  P  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25261" stop="25623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNEYSSDGETTMYSAETAESRNYPSPKGGRFHQVGRSQSCVNYNRWGPVSKNSAARRANQEQKRNIMQGRKVHSQGTTSHRSNDYYSPTVSSIMKKRNNMEAQIRPPRLSAGNSSPRWMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="28161" PGL_stop="32344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28161" e_stop="28197"/>
            <exon e_start="28741" e_stop="28874"/>
            <exon e_start="28968" e_stop="29081"/>
            <exon e_start="29612" e_stop="29707"/>
            <exon e_start="31091" e_stop="31178"/>
            <exon e_start="31253" e_stop="31321"/>
            <exon e_start="31647" e_stop="31870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.701" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.422" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28161" e_stop="28197" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28198" i_stop="28740" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28741" e_stop="28874" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.701" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28875" i_stop="28967" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28968" e_stop="29081" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.422" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29082" i_stop="29611" i_length="530"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29612" e_stop="29707" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29708" i_stop="31090" i_length="1383"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31091" e_stop="31178" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.924">
            <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31253" e_stop="31321" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.968">
            <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31647" e_stop="31870" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28161" stop="28197"/>
              <exon start="28741" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28161" stop="28197"/>
              <exon start="28741" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28162" stop="28197"/>
              <exon start="28741" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="31694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28162" stop="28197"/>
              <exon start="28741" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28162" stop="28197"/>
              <exon start="28741" stop="28874"/>
              <exon start="28968" stop="29060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28745" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="31870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28745" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="31868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28745" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="31694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28791" stop="28874"/>
              <exon start="28968" stop="29081"/>
              <exon start="29612" stop="29707"/>
              <exon start="31091" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="31737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGTAACTGTTGAAACTATCGCCAATCTCTTGCAG : GAGGTTGGATGCAACCATGCTCAAAGTGTTGGATTTTCAACGGATGGATTTGCAACTACCCATAGCATGAGAAAATTACATCTTATATGGGTTACTGCTCGCATGTACATTGAGATCTATAAGTACCCTGCTTG : GAGTGATGTTGTTGAAATAGAGACTTGGTGCCAAAGTGAAGGCAGGATTGGGACTAGACGCGATTGGATTCTCAAAGACTGCGCTACTGGTGAAGTCATTGGAAGAGCAACCAG : CAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAG : GTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG : CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG : AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGA</gDNA_template>
            <first_frame> N  C  N  C  *  N  Y  R  Q  S  L  A   : G  G  W  M  Q  P  C  S  K  C  W  I  F  N  G  W  I  C  N  Y  P  *  H  E  K  I  T  S  Y  M  G  Y  C  S  H  V  H  *  D  L  *  V  P  C  L  :  E  *  C  C  *  N  R  D  L  V  P  K  *  R  Q  D  W  D  *  T  R  L  D  S  Q  R  L  R  Y  W  *  S  H  W  K  S  N  Q  :  Q  V  A  H  D  E  P  G  H  K  T  A  S  K  G  H  *  *  S  S  *  *  A  G  A  L  F  S  K  R  T  E  :  V  S  F  S  *  G  E  *  W  Q  P  K  E  N  S  K  T  *  R  S  R  *  V  F  E  A  R  N  G   : A  T  K  S  *  S  G  H  E  S  A  R  K  Q  C  H  L  H  W  M  G  S  *   : E  Y  S  S  R  N  H  *  Y  T  *  T  G  N  N  Y  Y  R  L  *  A  *  M  S  A  *  *  C  C  R  F  P  Y  K  R  *  A  Y  *  G  C  *  C  L  R  E  S  R  V  *  W  I  C  Y  C  S  K  G  C  K  Q  E  L  L  A  F  V  E  I  I  K  R  W  T  * </first_frame>
            <second_frame>  T  V  T  V  E  T  I  A  N  L  L  Q  :  E  V  G  C  N  H  A  Q  S  V  G  F  S  T  D  G  F  A  T  T  H  S  M  R  K  L  H  L  I  W  V  T  A  R  M  Y  I  E  I  Y  K  Y  P  A  W :   S  D  V  V  E  I  E  T  W  C  Q  S  E  G  R  I  G  T  R  R  D  W  I  L  K  D  C  A  T  G  E  V  I  G  R  A  T  S :   K  W  L  M  M  N  Q  D  T  R  R  L  Q  K  V  T  D  E  V  R  D  E  L  E  L  Y  F  P  K  E  L  R :   L  A  F  P  E  E  N  N  G  S  L  K  K  I  A  K  L  E  D  P  A  E  Y  S  K  L  G  M  V  :  P  R  R  A  D  L  D  M  N  Q  H  V  N  N  V  T  Y  I  G  W  V  L  E  :  S  I  P  Q  E  I  I  D  T  H  E  L  E  T  I  T  I  D  Y  R  R  E  C  Q  H  D  D  V  V  D  S  L  T  S  V  E  P  I  E  D  A  D  A  L  E  S  H  G  S  N  G  S  A  T  A  P  K  D  V  N  K  S  F  L  H  L  L  R  L  S  S  D  G  L   </second_frame>
            <third_frame>   L  *  L  L  K  L  S  P  I  S  C  R :   R  L  D  A  T  M  L  K  V  L  D  F  Q  R  M  D  L  Q  L  P  I  A  *  E  N  Y  I  L  Y  G  L  L  L  A  C  T  L  R  S  I  S  T  L  L   : G  V  M  L  L  K  *  R  L  G  A  K  V  K  A  G  L  G  L  D  A  I  G  F  S  K  T  A  L  L  V  K  S  L  E  E  Q  P   : A  S  G  S  *  *  T  R  T  Q  D  G  F  K  R  S  L  M  K  F  V  M  S  W  S  S  I  F  Q  K  N  *   : G  *  L  F  L  R  R  I  M  A  A  *  R  K  *  Q  N  L  K  I  P  L  S  I  R  S  *  E  W  C :   H  E  E  L  I  W  T  *  I  S  T  *  T  M  S  L  T  L  D  G  F  L  R :   V  F  L  K  K  S  L  I  H  M  N  W  K  Q  L  L  *  I  I  G  V  N  V  S  M  M  M  L  S  I  P  L  Q  A  L  S  L  L  R  M  L  M  P  *  R  V  T  G  L  M  D  L  L  L  L  Q  R  M  *  T  R  A  S  C  I  C  *  D  Y  Q  A  M  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28162" stop="28197"/>
                    <exon start="28741" stop="28874"/>
                    <exon start="28968" stop="29081"/>
                    <exon start="29612" stop="29707"/>
                    <exon start="31091" stop="31178"/>
                    <exon start="31253" stop="31321"/>
                    <exon start="31647" stop="31868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVTVETIANLLQEVGCNHAQSVGFSTDGFATTHSMRKLHLIWVTARMYIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVIGRATSKWLMMNQDTRRLQKVTDEVRDELELYFPKELRLAFPEENNGSLKKIAKLEDPAEYSKLGMVPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELETITIDYRRECQHDDVVDSLTSVEPIEDADALESHGSNGSATAPKDVNKSFLHLLRLSSDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30421" e_stop="31178"/>
            <exon e_start="31253" e_stop="31321"/>
            <exon e_start="31647" e_stop="32220"/>
            <exon e_start="32320" e_stop="32344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30421" e_stop="31178" e_length="758"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.924">
            <gDNA_intron_boundary i_start="31179" i_stop="31252" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31253" e_stop="31321" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.968">
            <gDNA_intron_boundary i_start="31322" i_stop="31646" i_length="325"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="31647" e_stop="32220" e_length="574"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32221" i_stop="32319" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="32320" e_stop="32344" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30421" stop="31178"/>
              <exon start="31253" stop="31288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30422" stop="31005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31027" stop="31178"/>
              <exon start="31253" stop="31321"/>
              <exon start="31647" stop="32220"/>
              <exon start="32320" stop="32344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCATACACATGGTTTTGCAAAAAGAAAATAGAATTAGAAAAAGAACTAAACCAATCTGTCTATTATCCAGTTTCTTTCTACTCTGGTGCAAGCTTGTTTCCCAGACGTATATTCACTTTAGTTAGACTGTCAGGCAATCATATGTGGTGTCTTCTCTATCAAGTCAACTCCAATGGTCAATTTTGCATTTTTATATTTCATTGAAGTAATACGCCAAGTCATTCTGACTTCCTCTTCTATTTACTCACTATGTTTAAATCAAGTAGAGTGAGGGTGGCTAGTGAGAGAGAAATTAGACAAAGGGACGAAATCAGTCTTGAACTTCTACGTTTCCCAAATAACTTGAGGGTACAGGGATTTCCTGAGAGATTTGCCACCATTCTGTAATTAGACTGAAAGGAGGAAACTTAGGGATCTGAGAAGTACTACACTTTGGAGAAGCAAAAAGAAAAACTACCCCTCCCCTCCTTCAACCAAACATATTTTAAAGTTTATATACTTCATAACAGCACCAACCACAATTGTGTTATGTGTAACGTGCTATTTCATATCATCTGCAATGTCACTGACCATGATTTCGGCACATGTAAGTTTGAGTGTTGTATTTTATTGGCAGTAATGTTATTGAAAAGTGGCACTCTGTTCTTGTTTGACTGTTCACAATTCCAGGTTAGCTTTTCCTGAGGAGAATAATGGCAGCCTAAAGAAAATAGCAAAACTTGAAGATCCCGCTGAGTATTCGAAGCTAGGAATGGTG : CCACGAAGAGCTGATCTGGACATGAATCAGCACGTAAACAATGTCACTTACATTGGATGGGTTCTTGAG : AGTATTCCTCAAGAAATCATTGATACACATGAACTGGAAACAATTACTATAGATTATAGGCGTGAATGTCAGCATGATGATGTTGTCGATTCCCTTACAAGCGTTGAGCCTATTGAGGATGCTGATGCCTTAGAGAGTCACGGGTCTAATGGATCTGCTACTGCTCCAAAGGATGTAAACAAGAGCTTCTTGCATTTGTTGAGATTATCAAGCGATGGACTTGAAATAAATAGGTGTCGAACTGAATGGAGAAAGAAGTCTGCTAGGACATAAGATTCAATGTGTTCTATTGTTCATTGTAGCCTAAGTACTCGGTGGAGGAGCTCCCTTTTGTTACTTTGTTTTCCAACTTTTCGTGTCTGTCTCTTTTCTTGTCTTTCTGTAGTCTTTATTGCTTCCGTTCTTTCTTTTTCCTAGAGCTCTGGATAGATGGTTGAGATGAGGCTTCATTGATTTGTACTAATGTTTTAGTTACGCAAATAAACAGGATGAGGAAAATAGTGTGCTAGTATGGGAACAGATTATTTGTATCATATAATTTATGACATGTATCTCCTGCTTGTTTGCTATTTAT : ATAAGAAAGAAACTGTACAGGTGAG</gDNA_template>
            <first_frame> R  I  H  M  V  L  Q  K  E  N  R  I  R  K  R  T  K  P  I  C  L  L  S  S  F  F  L  L  W  C  K  L  V  S  Q  T  Y  I  H  F  S  *  T  V  R  Q  S  Y  V  V  S  S  L  S  S  Q  L  Q  W  S  I  L  H  F  Y  I  S  L  K  *  Y  A  K  S  F  *  L  P  L  L  F  T  H  Y  V  *  I  K  *  S  E  G  G  *  *  E  R  N  *  T  K  G  R  N  Q  S  *  T  S  T  F  P  K  *  L  E  G  T  G  I  S  *  E  I  C  H  H  S  V  I  R  L  K  G  G  N  L  G  I  *  E  V  L  H  F  G  E  A  K  R  K  T  T  P  P  L  L  Q  P  N  I  F  *  S  L  Y  T  S  *  Q  H  Q  P  Q  L  C  Y  V  *  R  A  I  S  Y  H  L  Q  C  H  *  P  *  F  R  H  M  *  V  *  V  L  Y  F  I  G  S  N  V  I  E  K  W  H  S  V  L  V  *  L  F  T  I  P  G  *  L  F  L  R  R  I  M  A  A  *  R  K  *  Q  N  L  K  I  P  L  S  I  R  S  *  E  W  C :   H  E  E  L  I  W  T  *  I  S  T  *  T  M  S  L  T  L  D  G  F  L  R :   V  F  L  K  K  S  L  I  H  M  N  W  K  Q  L  L  *  I  I  G  V  N  V  S  M  M  M  L  S  I  P  L  Q  A  L  S  L  L  R  M  L  M  P  *  R  V  T  G  L  M  D  L  L  L  L  Q  R  M  *  T  R  A  S  C  I  C  *  D  Y  Q  A  M  D  L  K  *  I  G  V  E  L  N  G  E  R  S  L  L  G  H  K  I  Q  C  V  L  L  F  I  V  A  *  V  L  G  G  G  A  P  F  C  Y  F  V  F  Q  L  F  V  S  V  S  F  L  V  F  L  *  S  L  L  L  P  F  F  L  F  P  R  A  L  D  R  W  L  R  *  G  F  I  D  L  Y  *  C  F  S  Y  A  N  K  Q  D  E  E  N  S  V  L  V  W  E  Q  I  I  C  I  I  *  F  M  T  C  I  S  C  L  F  A  I  Y  :  I  R  K  K  L  Y  R  *  </first_frame>
            <second_frame>  A  Y  T  W  F  C  K  K  K  I  E  L  E  K  E  L  N  Q  S  V  Y  Y  P  V  S  F  Y  S  G  A  S  L  F  P  R  R  I  F  T  L  V  R  L  S  G  N  H  M  W  C  L  L  Y  Q  V  N  S  N  G  Q  F  C  I  F  I  F  H  *  S  N  T  P  S  H  S  D  F  L  F  Y  L  L  T  M  F  K  S  S  R  V  R  V  A  S  E  R  E  I  R  Q  R  D  E  I  S  L  E  L  L  R  F  P  N  N  L  R  V  Q  G  F  P  E  R  F  A  T  I  L  *  L  D  *  K  E  E  T  *  G  S  E  K  Y  Y  T  L  E  K  Q  K  E  K  L  P  L  P  S  F  N  Q  T  Y  F  K  V  Y  I  L  H  N  S  T  N  H  N  C  V  M  C  N  V  L  F  H  I  I  C  N  V  T  D  H  D  F  G  T  C  K  F  E  C  C  I  L  L  A  V  M  L  L  K  S  G  T  L  F  L  F  D  C  S  Q  F  Q  V  S  F  S  *  G  E  *  W  Q  P  K  E  N  S  K  T  *  R  S  R  *  V  F  E  A  R  N  G   : A  T  K  S  *  S  G  H  E  S  A  R  K  Q  C  H  L  H  W  M  G  S  *   : E  Y  S  S  R  N  H  *  Y  T  *  T  G  N  N  Y  Y  R  L  *  A  *  M  S  A  *  *  C  C  R  F  P  Y  K  R  *  A  Y  *  G  C  *  C  L  R  E  S  R  V  *  W  I  C  Y  C  S  K  G  C  K  Q  E  L  L  A  F  V  E  I  I  K  R  W  T  *  N  K  *  V  S  N  *  M  E  K  E  V  C  *  D  I  R  F  N  V  F  Y  C  S  L  *  P  K  Y  S  V  E  E  L  P  F  V  T  L  F  S  N  F  S  C  L  S  L  F  L  S  F  C  S  L  Y  C  F  R  S  F  F  F  L  E  L  W  I  D  G  *  D  E  A  S  L  I  C  T  N  V  L  V  T  Q  I  N  R  M  R  K  I  V  C  *  Y  G  N  R  L  F  V  S  Y  N  L  *  H  V  S  P  A  C  L  L  F  I :   *  E  R  N  C  T  G  E </second_frame>
            <third_frame>   H  T  H  G  F  A  K  R  K  *  N  *  K  K  N  *  T  N  L  S  I  I  Q  F  L  S  T  L  V  Q  A  C  F  P  D  V  Y  S  L  *  L  D  C  Q  A  I  I  C  G  V  F  S  I  K  S  T  P  M  V  N  F  A  F  L  Y  F  I  E  V  I  R  Q  V  I  L  T  S  S  S  I  Y  S  L  C  L  N  Q  V  E  *  G  W  L  V  R  E  K  L  D  K  G  T  K  S  V  L  N  F  Y  V  S  Q  I  T  *  G  Y  R  D  F  L  R  D  L  P  P  F  C  N  *  T  E  R  R  K  L  R  D  L  R  S  T  T  L  W  R  S  K  K  K  N  Y  P  S  P  P  S  T  K  H  I  L  K  F  I  Y  F  I  T  A  P  T  T  I  V  L  C  V  T  C  Y  F  I  S  S  A  M  S  L  T  M  I  S  A  H  V  S  L  S  V  V  F  Y  W  Q  *  C  Y  *  K  V  A  L  C  S  C  L  T  V  H  N  S  R  L  A  F  P  E  E  N  N  G  S  L  K  K  I  A  K  L  E  D  P  A  E  Y  S  K  L  G  M  V  :  P  R  R  A  D  L  D  M  N  Q  H  V  N  N  V  T  Y  I  G  W  V  L  E  :  S  I  P  Q  E  I  I  D  T  H  E  L  E  T  I  T  I  D  Y  R  R  E  C  Q  H  D  D  V  V  D  S  L  T  S  V  E  P  I  E  D  A  D  A  L  E  S  H  G  S  N  G  S  A  T  A  P  K  D  V  N  K  S  F  L  H  L  L  R  L  S  S  D  G  L  E  I  N  R  C  R  T  E  W  R  K  K  S  A  R  T  *  D  S  M  C  S  I  V  H  C  S  L  S  T  R  W  R  S  S  L  L  L  L  C  F  P  T  F  R  V  C  L  F  S  C  L  S  V  V  F  I  A  S  V  L  S  F  S  *  S  S  G  *  M  V  E  M  R  L  H  *  F  V  L  M  F  *  L  R  K  *  T  G  *  G  K  *  C  A  S  M  G  T  D  Y  L  Y  H  I  I  Y  D  M  Y  L  L  L  V  C  Y  L   : Y  K  K  E  T  V  Q  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31050" stop="31178"/>
                    <exon start="31253" stop="31321"/>
                    <exon start="31647" stop="31919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVALCSCLTVHNSRLAFPEENNGSLKKIAKLEDPAEYSKLGMVPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELETITIDYRRECQHDDVVDSLTSVEPIEDADALESHGSNGSATAPKDVNKSFLHLLRLSSDGLEINRCRTEWRKKSART*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30813" stop="31040"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRKLRDLRSTTLWRSKKKNYPSPPSTKHILKFIYFITAPTTIVLCVTCYFISSAMSLTMISAHVSLSVVFYWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30422" stop="30625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYTWFCKKKIELEKELNQSVYYPVSFYSGASLFPRRIFTLVRLSGNHMWCLLYQVNSNGQFCIFIFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29486" e_stop="30020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29486" e_stop="30020" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29486" stop="30020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTCGAGTATCAAGGTCACAGATACCACCGTCTAACAATCTGTAAATCCTTTCTTTTTCCTATATTGCTTCTCGAGTTATTCTACAAAAATTAAATTAGGATGTTATGATATCTGATTGCAGCAAGTGGCTCATGATGAACCAGGACACAAGACGGCTTCAAAAGGTCACTGATGAAGTTCGTGATGAGCTGGAGCTCTATTTTCCAAAAGAACTGAGGTTAACTTAGGTTCCTCTTTTTCATTTTTTTTCTTTCCCTTCCCTATCCTGGAACTTATAATTTCCTAAGTGGGGTAAAGTATTCTTGTAAACTATAACTGTAAATAAGGAAACTGTTCATTGAACTCTTGAAATTATCATACAACGGTTTTGAATGGTGTTAATGGGTACATGATTCTTGGTGCTGGTAAATGAAAATGTAGCTGTTAAATACTATCATAAGTTACACATATATCTAACATAAATGGTTTGAATCATAGACATTACAGATTCTTAATTATTACATCTATTTCTTGGTATTTGACGTGTTTTT</gDNA_template>
            <first_frame> V  F  S  S  I  K  V  T  D  T  T  V  *  Q  S  V  N  P  F  F  F  L  Y  C  F  S  S  Y  S  T  K  I  K  L  G  C  Y  D  I  *  L  Q  Q  V  A  H  D  E  P  G  H  K  T  A  S  K  G  H  *  *  S  S  *  *  A  G  A  L  F  S  K  R  T  E  V  N  L  G  S  S  F  S  F  F  F  F  P  F  P  I  L  E  L  I  I  S  *  V  G  *  S  I  L  V  N  Y  N  C  K  *  G  N  C  S  L  N  S  *  N  Y  H  T  T  V  L  N  G  V  N  G  Y  M  I  L  G  A  G  K  *  K  C  S  C  *  I  L  S  *  V  T  H  I  S  N  I  N  G  L  N  H  R  H  Y  R  F  L  I  I  T  S  I  S  W  Y  L  T  C  F  </first_frame>
            <second_frame>  F  S  R  V  S  R  S  Q  I  P  P  S  N  N  L  *  I  L  S  F  S  Y  I  A  S  R  V  I  L  Q  K  L  N  *  D  V  M  I  S  D  C  S  K  W  L  M  M  N  Q  D  T  R  R  L  Q  K  V  T  D  E  V  R  D  E  L  E  L  Y  F  P  K  E  L  R  L  T  *  V  P  L  F  H  F  F  S  F  P  S  L  S  W  N  L  *  F  P  K  W  G  K  V  F  L  *  T  I  T  V  N  K  E  T  V  H  *  T  L  E  I  I  I  Q  R  F  *  M  V  L  M  G  T  *  F  L  V  L  V  N  E  N  V  A  V  K  Y  Y  H  K  L  H  I  Y  L  T  *  M  V  *  I  I  D  I  T  D  S  *  L  L  H  L  F  L  G  I  *  R  V  F </second_frame>
            <third_frame>   F  L  E  Y  Q  G  H  R  Y  H  R  L  T  I  C  K  S  F  L  F  P  I  L  L  L  E  L  F  Y  K  N  *  I  R  M  L  *  Y  L  I  A  A  S  G  S  *  *  T  R  T  Q  D  G  F  K  R  S  L  M  K  F  V  M  S  W  S  S  I  F  Q  K  N  *  G  *  L  R  F  L  F  F  I  F  F  L  S  L  P  Y  P  G  T  Y  N  F  L  S  G  V  K  Y  S  C  K  L  *  L  *  I  R  K  L  F  I  E  L  L  K  L  S  Y  N  G  F  E  W  C  *  W  V  H  D  S  W  C  W  *  M  K  M  *  L  L  N  T  I  I  S  Y  T  Y  I  *  H  K  W  F  E  S  *  T  L  Q  I  L  N  Y  Y  I  Y  F  L  V  F  D  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0034C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="38998" PGL_stop="38181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38998" e_stop="38181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="38998" e_stop="38181" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38998" stop="38260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38940" stop="38181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38863" stop="38222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTTTAGAATAGCATAAAATCCCTACTGACAGCCTCTACTTCATCGAGACTCAATTGTGAATTCCCTTTTCAAAGCACTCTTTTTCTCGTCGGAGATTCTTCGCCGGAGAAAGGAAACTCGGTTATTCATCACCTGATAGTCCGTTGAGATGGGAAGCAGCAGCGGTAGCGATGTAGAAGCGGGATTCGCGAAGCTACAAGGTGAAGATTTCGAGTATTACATGCAAACTTACTCCATAATCCTTGGCCGGAATTCCAAAAAATCAACGGTAGATGTCGACTTATCATCTCTCGGTGGCGGAATGAACATCTCCCGCCACCATGCTCGCATCTTCTACGACTTCCAACGACGTCGTTTTGCCCTCGAAGTACTGGGCAAAAACGGGTGTTCAGTTGAAGGTGTTCTTCACCTTCCCGGTACCCCACCCATCAAGCTAGATTCTCAAGACCTTCTTCAGATCGGAGATAAAGAGTTCTATTTCCTCCTTCCAATTCGTAGCATCCTTGGTGGGTCCAGGGGACAACATGTCAATGCGAATTATCCAGTGGCGGGTCCTGCCGCCATTGCCCATCATCACCACCAGCAGCAGCATTTGTCACCGTCTCCTGTTGCGAATGTAGGTGCGGGATATGGTGGGGCAGTGAACAAGGGCTTATTCAGAGGGAGAGAGTATTACGAGGAGGAATATGATGACGACGATGATGATGGTGGTTCAGTAGGTAAGAAGATGAGGAGGGGTGAAGGTCCTGAGGGTGGCGGCTATGGGTATGGTTCGTGTGGTTCCAGTGGGAAGGCTTCGATTTCTGGGCAATTAG</gDNA_template>
            <first_frame> A  F  *  N  S  I  K  S  L  L  T  A  S  T  S  S  R  L  N  C  E  F  P  F  Q  S  T  L  F  L  V  G  D  S  S  P  E  K  G  N  S  V  I  H  H  L  I  V  R  *  D  G  K  Q  Q  R  *  R  C  R  S  G  I  R  E  A  T  R  *  R  F  R  V  L  H  A  N  L  L  H  N  P  W  P  E  F  Q  K  I  N  G  R  C  R  L  I  I  S  R  W  R  N  E  H  L  P  P  P  C  S  H  L  L  R  L  P  T  T  S  F  C  P  R  S  T  G  Q  K  R  V  F  S  *  R  C  S  S  P  S  R  Y  P  T  H  Q  A  R  F  S  R  P  S  S  D  R  R  *  R  V  L  F  P  P  S  N  S  *  H  P  W  W  V  Q  G  T  T  C  Q  C  E  L  S  S  G  G  S  C  R  H  C  P  S  S  P  P  A  A  A  F  V  T  V  S  C  C  E  C  R  C  G  I  W  W  G  S  E  Q  G  L  I  Q  R  E  R  V  L  R  G  G  I  *  *  R  R  *  *  W  W  F  S  R  *  E  D  E  E  G  *  R  S  *  G  W  R  L  W  V  W  F  V  W  F  Q  W  E  G  F  D  F  W  A  I   </first_frame>
            <second_frame>  L  F  R  I  A  *  N  P  Y  *  Q  P  L  L  H  R  D  S  I  V  N  S  L  F  K  A  L  F  F  S  S  E  I  L  R  R  R  K  E  T  R  L  F  I  T  *  *  S  V  E  M  G  S  S  S  G  S  D  V  E  A  G  F  A  K  L  Q  G  E  D  F  E  Y  Y  M  Q  T  Y  S  I  I  L  G  R  N  S  K  K  S  T  V  D  V  D  L  S  S  L  G  G  G  M  N  I  S  R  H  H  A  R  I  F  Y  D  F  Q  R  R  R  F  A  L  E  V  L  G  K  N  G  C  S  V  E  G  V  L  H  L  P  G  T  P  P  I  K  L  D  S  Q  D  L  L  Q  I  G  D  K  E  F  Y  F  L  L  P  I  R  S  I  L  G  G  S  R  G  Q  H  V  N  A  N  Y  P  V  A  G  P  A  A  I  A  H  H  H  H  Q  Q  Q  H  L  S  P  S  P  V  A  N  V  G  A  G  Y  G  G  A  V  N  K  G  L  F  R  G  R  E  Y  Y  E  E  E  Y  D  D  D  D  D  D  G  G  S  V  G  K  K  M  R  R  G  E  G  P  E  G  G  G  Y  G  Y  G  S  C  G  S  S  G  K  A  S  I  S  G  Q  L  </second_frame>
            <third_frame>   F  L  E  *  H  K  I  P  T  D  S  L  Y  F  I  E  T  Q  L  *  I  P  F  S  K  H  S  F  S  R  R  R  F  F  A  G  E  R  K  L  G  Y  S  S  P  D  S  P  L  R  W  E  A  A  A  V  A  M  *  K  R  D  S  R  S  Y  K  V  K  I  S  S  I  T  C  K  L  T  P  *  S  L  A  G  I  P  K  N  Q  R  *  M  S  T  Y  H  L  S  V  A  E  *  T  S  P  A  T  M  L  A  S  S  T  T  S  N  D  V  V  L  P  S  K  Y  W  A  K  T  G  V  Q  L  K  V  F  F  T  F  P  V  P  H  P  S  S  *  I  L  K  T  F  F  R  S  E  I  K  S  S  I  S  S  F  Q  F  V  A  S  L  V  G  P  G  D  N  M  S  M  R  I  I  Q  W  R  V  L  P  P  L  P  I  I  T  T  S  S  S  I  C  H  R  L  L  L  R  M  *  V  R  D  M  V  G  Q  *  T  R  A  Y  S  E  G  E  S  I  T  R  R  N  M  M  T  T  M  M  M  V  V  Q  *  V  R  R  *  G  G  V  K  V  L  R  V  A  A  M  G  M  V  R  V  V  P  V  G  R  L  R  F  L  G  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38856" stop="38182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVEMGSSSGSDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFQRRRFALEVLGKNGCSVEGVLHLPGTPPIKLDSQDLLQIGDKEFYFLLPIRSILGGSRGQHVNANYPVAGPAAIAHHHHQQQHLSPSPVANVGAGYGGAVNKGLFRGREYYEEEYDDDDDDGGSVGKKMRRGEGPEGGGYGYGSCGSSGKASISGQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="40502" PGL_stop="47398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40502" e_stop="40600"/>
            <exon e_start="40740" e_stop="40798"/>
            <exon e_start="41178" e_stop="41272"/>
            <exon e_start="42444" e_stop="42750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40502" e_stop="40600" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40740" e_stop="40798" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41272" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="42444" e_stop="42750" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40502" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40527" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40528" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40530" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40531" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40531" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40532" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40538" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40539" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40543" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40543" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40545" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40547" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40553" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280456" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40562" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40566" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41180" stop="41272"/>
              <exon start="42444" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41213" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAAGGGATATTGCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG : GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG : GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA : CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAACTCTGTTTCACATTTTA</gDNA_template>
            <first_frame> S  R  R  D  I  A  A  E  A  *  K  L  Q  T  *  N  *  G  F  S  K  M  I  I  P  V  R  C  F  T  C  G  K  :  V  I  G  N  K  W  D  E  Y  L  D  L  L  Q  A  D  Y  A  E  G :   D  A  L  D  A  L  N  L  V  R  Y  C  C  R  R  M  L  M  T  H  V  D  L  I  E  K  L  L  N  Y  N   : T  L  E  K  S  E  G  S  *  S  N  F  L  N  *  *  A  P  N  V  Y  I  *  T  I  Y  F  L  A  V  I  L  F  L  V  V  R  R  *  S  K  L  F  P  Y  E  G  S  L  M  N  R  V  T  S  K  Q  C  D  T  A  S  Y  S  *  C  F  V  G  S  E  S  P  G  F  L  F  N  N  I  Y  A  G  V  V  A  L  *  T  *  K  L  N  L  F  Y  K  L  C  F  T  F   </first_frame>
            <second_frame>  H  E  G  I  L  L  L  K  L  E  S  C  R  L  R  T  R  V  S  A  R  *  S  F  Q  C  A  V  S  P  A  G  R :   L  L  A  T  N  G  M  N  T  L  I  F  S  K  L  I  T  P  K   : G  M  H  L  M  H  *  I  W  L  D  I  A  V  V  E  C  L  *  L  M  L  I  S  L  R  S  F  S  T  T  T  :  H  W  R  N  L  R  E  V  E  A  I  S  *  T  N  E  L  Q  M  F  I  S  R  P  S  T  S  *  L  *  F  S  F  *  L  *  G  G  E  V  N  C  S  H  M  K  G  V  L  *  I  V  *  P  V  N  S  V  I  L  Q  A  T  L  D  V  L  L  V  L  N  L  L  V  S  Y  L  T  I  Y  M  L  V  *  W  H  S  K  L  R  S  *  T  F  S  T  N  S  V  S  H  F  </second_frame>
            <third_frame>   T  K  G  Y  C  C  *  S  L  K  V  A  D  L  E  L  G  F  Q  Q  D  D  H  S  S  A  L  F  H  L  R  E   : G  Y  W  Q  Q  M  G  *  I  P  *  S  S  P  S  *  L  R  R  R  :  G  C  T  *  C  T  E  F  G  *  I  L  L  S  *  N  A  Y  D  S  C  *  S  H  *  E  A  S  Q  L  Q  H :   T  G  E  I  *  G  K  L  K  Q  F  P  E  L  M  S  S  K  C  L  Y  L  D  H  L  L  L  S  C  N  S  L  S  S  C  K  E  V  K  *  I  V  P  I  *  R  E  S  Y  E  S  C  N  Q  *  T  V  *  Y  C  K  L  L  L  M  F  C  W  F  *  I  S  W  F  P  I  *  Q  Y  I  C  W  C  S  G  T  L  N  L  E  V  E  P  F  L  Q  T  L  F  H  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40553" stop="40600"/>
                    <exon start="40740" stop="40798"/>
                    <exon start="41178" stop="41272"/>
                    <exon start="42444" stop="42469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSKMIIPVRCFTCGKVIGNKWDEYLDLLQADYAEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSEGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40502" e_stop="40600"/>
            <exon e_start="40740" e_stop="40798"/>
            <exon e_start="41178" e_stop="41272"/>
            <exon e_start="42444" e_stop="42733"/>
            <exon e_start="47310" e_stop="47398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40502" e_stop="40600" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40740" e_stop="40798" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41272" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42444" e_stop="42733" e_length="290"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42734" i_stop="47309" i_length="4576"/>
          </intron>
          <exon e_serial="5" e_score="0.000">
            <gDNA_exon_boundary e_start="47310" e_stop="47398" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40502" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40527" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40528" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40530" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40531" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40531" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40532" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
              <exon start="47310" stop="47398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
              <exon start="47309" stop="47398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40538" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40539" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40553" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280456" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40562" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40566" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41180" stop="41272"/>
              <exon start="42444" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41213" stop="41272"/>
              <exon start="42444" stop="42733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAAGGGATATTGCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG : GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG : GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA : CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAATCTCCTGGTTTCCTATTTAACAATATATATGCTGGTGTAGTGGCACTCTAAACTTAGAAGTTGAACCTTTTCTACAAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  R  R  D  I  A  A  E  A  *  K  L  Q  T  *  N  *  G  F  S  K  M  I  I  P  V  R  C  F  T  C  G  K  :  V  I  G  N  K  W  D  E  Y  L  D  L  L  Q  A  D  Y  A  E  G :   D  A  L  D  A  L  N  L  V  R  Y  C  C  R  R  M  L  M  T  H  V  D  L  I  E  K  L  L  N  Y  N   : T  L  E  K  S  E  G  S  *  S  N  F  L  N  *  *  A  P  N  V  Y  I  *  T  I  Y  F  L  A  V  I  L  F  L  V  V  R  R  *  S  K  L  F  P  Y  E  G  S  L  M  N  R  V  T  S  K  Q  C  D  T  A  S  Y  S  *  C  F  V  G  S  E  S  P  G  F  L  F  N  N  I  Y  A  G  V  V  A  L  *  T  *  K  L  N  L  F  Y  K  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  H  E  G  I  L  L  L  K  L  E  S  C  R  L  R  T  R  V  S  A  R  *  S  F  Q  C  A  V  S  P  A  G  R :   L  L  A  T  N  G  M  N  T  L  I  F  S  K  L  I  T  P  K   : G  M  H  L  M  H  *  I  W  L  D  I  A  V  V  E  C  L  *  L  M  L  I  S  L  R  S  F  S  T  T  T  :  H  W  R  N  L  R  E  V  E  A  I  S  *  T  N  E  L  Q  M  F  I  S  R  P  S  T  S  *  L  *  F  S  F  *  L  *  G  G  E  V  N  C  S  H  M  K  G  V  L  *  I  V  *  P  V  N  S  V  I  L  Q  A  T  L  D  V  L  L  V  L  N  L  L  V  S  Y  L  T  I  Y  M  L  V  *  W  H  S  K  L  R  S  *  T  F  S  T  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   T  K  G  Y  C  C  *  S  L  K  V  A  D  L  E  L  G  F  Q  Q  D  D  H  S  S  A  L  F  H  L  R  E   : G  Y  W  Q  Q  M  G  *  I  P  *  S  S  P  S  *  L  R  R  R  :  G  C  T  *  C  T  E  F  G  *  I  L  L  S  *  N  A  Y  D  S  C  *  S  H  *  E  A  S  Q  L  Q  H :   T  G  E  I  *  G  K  L  K  Q  F  P  E  L  M  S  S  K  C  L  Y  L  D  H  L  L  L  S  C  N  S  L  S  S  C  K  E  V  K  *  I  V  P  I  *  R  E  S  Y  E  S  C  N  Q  *  T  V  *  Y  C  K  L  L  L  M  F  C  W  F  *  I  S  W  F  P  I  *  Q  Y  I  C  W  C  S  G  T  L  N  L  E  V  E  P  F  L  Q   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40553" stop="40600"/>
                    <exon start="40740" stop="40798"/>
                    <exon start="41178" stop="41272"/>
                    <exon start="42444" stop="42469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSKMIIPVRCFTCGKVIGNKWDEYLDLLQADYAEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSEGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40517" e_stop="40600"/>
            <exon e_start="40740" e_stop="40798"/>
            <exon e_start="41178" e_stop="41272"/>
            <exon e_start="42444" e_stop="42655"/>
            <exon e_start="43476" e_stop="43511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.796" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40517" e_stop="40600" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40601" i_stop="40739" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40740" e_stop="40798" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40799" i_stop="41177" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41272" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41273" i_stop="42443" i_length="1171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42444" e_stop="42655" e_length="212"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.796">
            <gDNA_intron_boundary i_start="42656" i_stop="43475" i_length="820"/>
          </intron>
          <exon e_serial="5" e_score="0.583">
            <gDNA_exon_boundary e_start="43476" e_stop="43511" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40517" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42655"/>
              <exon start="43476" stop="43511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40527" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40528" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40530" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40537" stop="40600"/>
              <exon start="40740" stop="40798"/>
              <exon start="41178" stop="41272"/>
              <exon start="42444" stop="42654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTGAAGCTTGAAAGTTGCAGACTTAGAACTAGGGTTTCAGCAAGATGATCATTCCAGTGCGCTGTTTCACCTGCGGGAAG : GTTATTGGCAACAAATGGGATGAATACCTTGATCTTCTCCAAGCTGATTACGCCGAAGG : GGATGCACTTGATGCACTGAATTTGGTTAGATATTGCTGTCGTAGAATGCTTATGACTCATGTTGATCTCATTGAGAAGCTTCTCAACTACAACA : CACTGGAGAAATCTGAGGGAAGTTGAAGCAATTTCCTGAACTAATGAGCTCCAAATGTTTATATCTAGACCATCTACTTCTTAGCTGTAATTCTCTTTCTAGTTGTAAGGAGGTGAAGTAAATTGTTCCCATATGAAGGGAGTCTTATGAATCGTGTAACCAGTAAACAGTGTGATACTGCAAGCTACTCTTGATGTTTTGTTGGTTCTGAA : CACAAACAAGGGTATAATAAAAAATGTGACCAAAAA</gDNA_template>
            <first_frame> A  A  E  A  *  K  L  Q  T  *  N  *  G  F  S  K  M  I  I  P  V  R  C  F  T  C  G  K  :  V  I  G  N  K  W  D  E  Y  L  D  L  L  Q  A  D  Y  A  E  G :   D  A  L  D  A  L  N  L  V  R  Y  C  C  R  R  M  L  M  T  H  V  D  L  I  E  K  L  L  N  Y  N   : T  L  E  K  S  E  G  S  *  S  N  F  L  N  *  *  A  P  N  V  Y  I  *  T  I  Y  F  L  A  V  I  L  F  L  V  V  R  R  *  S  K  L  F  P  Y  E  G  S  L  M  N  R  V  T  S  K  Q  C  D  T  A  S  Y  S  *  C  F  V  G  S  E  :  H  K  Q  G  Y  N  K  K  C  D  Q  K </first_frame>
            <second_frame>  L  L  K  L  E  S  C  R  L  R  T  R  V  S  A  R  *  S  F  Q  C  A  V  S  P  A  G  R :   L  L  A  T  N  G  M  N  T  L  I  F  S  K  L  I  T  P  K   : G  M  H  L  M  H  *  I  W  L  D  I  A  V  V  E  C  L  *  L  M  L  I  S  L  R  S  F  S  T  T  T  :  H  W  R  N  L  R  E  V  E  A  I  S  *  T  N  E  L  Q  M  F  I  S  R  P  S  T  S  *  L  *  F  S  F  *  L  *  G  G  E  V  N  C  S  H  M  K  G  V  L  *  I  V  *  P  V  N  S  V  I  L  Q  A  T  L  D  V  L  L  V  L  N :   T  N  K  G  I  I  K  N  V  T  K   </second_frame>
            <third_frame>   C  *  S  L  K  V  A  D  L  E  L  G  F  Q  Q  D  D  H  S  S  A  L  F  H  L  R  E   : G  Y  W  Q  Q  M  G  *  I  P  *  S  S  P  S  *  L  R  R  R  :  G  C  T  *  C  T  E  F  G  *  I  L  L  S  *  N  A  Y  D  S  C  *  S  H  *  E  A  S  Q  L  Q  H :   T  G  E  I  *  G  K  L  K  Q  F  P  E  L  M  S  S  K  C  L  Y  L  D  H  L  L  L  S  C  N  S  L  S  S  C  K  E  V  K  *  I  V  P  I  *  R  E  S  Y  E  S  C  N  Q  *  T  V  *  Y  C  K  L  L  L  M  F  C  W  F  *   : T  Q  T  R  V  *  *  K  M  *  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40553" stop="40600"/>
                    <exon start="40740" stop="40798"/>
                    <exon start="41178" stop="41272"/>
                    <exon start="42444" stop="42469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSKMIIPVRCFTCGKVIGNKWDEYLDLLQADYAEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSEGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="47457" PGL_stop="48668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47457" e_stop="47496"/>
            <exon e_start="47594" e_stop="48337"/>
            <exon e_start="48409" e_stop="48668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.673" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.974" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47457" e_stop="47496" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.673">
            <gDNA_intron_boundary i_start="47497" i_stop="47593" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="47594" e_stop="48337" e_length="744"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.974">
            <gDNA_intron_boundary i_start="48338" i_stop="48408" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48409" e_stop="48668" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47457" stop="47496"/>
              <exon start="47594" stop="48321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47457" stop="47496"/>
              <exon start="47594" stop="48210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47633" stop="48337"/>
              <exon start="48409" stop="48423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48002" stop="48337"/>
              <exon start="48409" stop="48668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249174" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATATTAAGCTAACAAATTATCGTCCATAGTTCAATCAG : GATTTTTATTTAGAGCTATTTATCTTTAGATCTGTGCTTTGCTGTTGGAGAATCAAGAATGTCTCATATCCTTCTGATATGTTTCTTTCTTTTCTCTGATTTATGTAAAAATTAGAGCTTTCTCTACTAATTTCATTTTCTTTCTGTCCAAATCTAATTGTTGTAGTTTTGATAGTCATATTTTTGAGATATTATTGTCCCTGTCATCGTATTTTGGAGATATTGGTACTGCTGCCGTTATACTTTGGGGACGTTGATGTTCCTGTTCTTTCATGCATATATGTTCTAATTTATGGACATTAATGTATTAATGTTTCAAAAGAATGATGGAGAATATTTGCATACCAGTTTGGGGATATATTTGTGCTTTTTTCCTAAAATAAAAGAACTTTTTGCTCCTGTTGGTTGCTAAAAAGGGGGCGGAAGTAAAATTTTAGCTTAAGTCTAAAGTAATGTCAAGCTGATTCGAGGCAAATGCAGCCTAACATTGAACATGTATTTACCTGTAATCCGATAGTACAAAGCATCAATGGTTTAAATTGTGTGTTTGCCTCAGCCTGAGTCCTTATCTTCCTTGAGCTTTGGTTTCCAAAATGTTGTTGATCCCTGCCTGTTTTTGGCCTTTAACTTGAGCTAACGCGGGAACCAGAGAGATCGAGATCGTGAAAGGGCACAAGCCAGGGGAAATCACAAGTCCAAGACACCTAAAAATGATGGATTAACTCCTGAACAACGAAGAGAAAG : GGATGCAAAGGCACTTCAAGAGAAGGCGAAAAAGAAAGCAGCACAGGCGGAAGATGGATGGAATATCAACAAATCGGAAAGCCATAACATCAAGAAGAAATAGATTCATGACGAGTTTCATGGAACTTTTTATCCTCAGTAATTCTGGCATGTATTGTTTGGCTTTTGTACCTTTGATTTGTGTCTTCATCTGCAATGAAATTTACTCACTCTTCACATTGTTGGAAAGAAATATATATTGATCAAAGAAATTTGAATTG</gDNA_template>
            <first_frame> Q  Y  *  A  N  K  L  S  S  I  V  Q  S   : G  F  L  F  R  A  I  Y  L  *  I  C  A  L  L  L  E  N  Q  E  C  L  I  S  F  *  Y  V  S  F  F  S  L  I  Y  V  K  I  R  A  F  S  T  N  F  I  F  F  L  S  K  S  N  C  C  S  F  D  S  H  I  F  E  I  L  L  S  L  S  S  Y  F  G  D  I  G  T  A  A  V  I  L  W  G  R  *  C  S  C  S  F  M  H  I  C  S  N  L  W  T  L  M  Y  *  C  F  K  R  M  M  E  N  I  C  I  P  V  W  G  Y  I  C  A  F  F  L  K  *  K  N  F  L  L  L  L  V  A  K  K  G  A  E  V  K  F  *  L  K  S  K  V  M  S  S  *  F  E  A  N  A  A  *  H  *  T  C  I  Y  L  *  S  D  S  T  K  H  Q  W  F  K  L  C  V  C  L  S  L  S  P  Y  L  P  *  A  L  V  S  K  M  L  L  I  P  A  C  F  W  P  L  T  *  A  N  A  G  T  R  E  I  E  I  V  K  G  H  K  P  G  E  I  T  S  P  R  H  L  K  M  M  D  *  L  L  N  N  E  E  K   : G  M  Q  R  H  F  K  R  R  R  K  R  K  Q  H  R  R  K  M  D  G  I  S  T  N  R  K  A  I  T  S  R  R  N  R  F  M  T  S  F  M  E  L  F  I  L  S  N  S  G  M  Y  C  L  A  F  V  P  L  I  C  V  F  I  C  N  E  I  Y  S  L  F  T  L  L  E  R  N  I  Y  *  S  K  K  F  E  L </first_frame>
            <second_frame>  N  I  K  L  T  N  Y  R  P  *  F  N  Q  :  D  F  Y  L  E  L  F  I  F  R  S  V  L  C  C  W  R  I  K  N  V  S  Y  P  S  D  M  F  L  S  F  L  *  F  M  *  K  L  E  L  S  L  L  I  S  F  S  F  C  P  N  L  I  V  V  V  L  I  V  I  F  L  R  Y  Y  C  P  C  H  R  I  L  E  I  L  V  L  L  P  L  Y  F  G  D  V  D  V  P  V  L  S  C  I  Y  V  L  I  Y  G  H  *  C  I  N  V  S  K  E  *  W  R  I  F  A  Y  Q  F  G  D  I  F  V  L  F  S  *  N  K  R  T  F  C  S  C  W  L  L  K  R  G  R  K  *  N  F  S  L  S  L  K  *  C  Q  A  D  S  R  Q  M  Q  P  N  I  E  H  V  F  T  C  N  P  I  V  Q  S  I  N  G  L  N  C  V  F  A  S  A  *  V  L  I  F  L  E  L  W  F  P  K  C  C  *  S  L  P  V  F  G  L  *  L  E  L  T  R  E  P  E  R  S  R  S  *  K  G  T  S  Q  G  K  S  Q  V  Q  D  T  *  K  *  W  I  N  S  *  T  T  K  R  K  :  G  C  K  G  T  S  R  E  G  E  K  E  S  S  T  G  G  R  W  M  E  Y  Q  Q  I  G  K  P  *  H  Q  E  E  I  D  S  *  R  V  S  W  N  F  L  S  S  V  I  L  A  C  I  V  W  L  L  Y  L  *  F  V  S  S  S  A  M  K  F  T  H  S  S  H  C  W  K  E  I  Y  I  D  Q  R  N  L  N   </second_frame>
            <third_frame>   I  L  S  *  Q  I  I  V  H  S  S  I  R :   I  F  I  *  S  Y  L  S  L  D  L  C  F  A  V  G  E  S  R  M  S  H  I  L  L  I  C  F  F  L  F  S  D  L  C  K  N  *  S  F  L  Y  *  F  H  F  L  S  V  Q  I  *  L  L  *  F  *  *  S  Y  F  *  D  I  I  V  P  V  I  V  F  W  R  Y  W  Y  C  C  R  Y  T  L  G  T  L  M  F  L  F  F  H  A  Y  M  F  *  F  M  D  I  N  V  L  M  F  Q  K  N  D  G  E  Y  L  H  T  S  L  G  I  Y  L  C  F  F  P  K  I  K  E  L  F  A  P  V  G  C  *  K  G  G  G  S  K  I  L  A  *  V  *  S  N  V  K  L  I  R  G  K  C  S  L  T  L  N  M  Y  L  P  V  I  R  *  Y  K  A  S  M  V  *  I  V  C  L  P  Q  P  E  S  L  S  S  L  S  F  G  F  Q  N  V  V  D  P  C  L  F  L  A  F  N  L  S  *  R  G  N  Q  R  D  R  D  R  E  R  A  Q  A  R  G  N  H  K  S  K  T  P  K  N  D  G  L  T  P  E  Q  R  R  E  R :   D  A  K  A  L  Q  E  K  A  K  K  K  A  A  Q  A  E  D  G  W  N  I  N  K  S  E  S  H  N  I  K  K  K  *  I  H  D  E  F  H  G  T  F  Y  P  Q  *  F  W  H  V  L  F  G  F  C  T  F  D  L  C  L  H  L  Q  *  N  L  L  T  L  H  I  V  G  K  K  Y  I  L  I  K  E  I  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48316" stop="48337"/>
                    <exon start="48409" stop="48650"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNNEEKGMQRHFKRRRKRKQHRRKMDGISTNRKAITSRRNRFMTSFMELFILSNSGMYCLAFVPLICVFICNEIYSLFTLLERNIY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48231" stop="48337"/>
                    <exon start="48409" stop="48511"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGNQRDRDRERAQARGNHKSKTPKNDGLTPEQRRERDAKALQEKAKKKAAQAEDGWNINKSESHNIKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47702" stop="47896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLELSLLISFSFCPNLIVVVLIVIFLRYYCPCHRILEILVLLPLYFGDVDVPVLSCIYVLIYGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53809" PGL_stop="54308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53809" e_stop="54308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53809" e_stop="54308" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53809" stop="54308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTGGTAATGATAGGGGCTATAGACATCCCAGTAGGAGCAATGTTACTCCATCAGGGCAGTCCTCTAAGTTTGAGGAAAGTCAAAATGCAAAAGAATTAGGTAAGTCTACTGCTTTTGGCATCCCTAAAAAAGCATACAAGCGAAGATACAGGCCCCGGCCAAATCGTGACAGTGCTAGATCAAGTTCATCTGATATAGCTCGTGGTGGTCATGACACATCTTTGCCTTCACAACATTTTCCCAAAGATGTAAAAGGACTTGTTTCTGATTTAGATAAGGATCAAAACTCGTCGTTGAACATTGCACAGACTCTTAGTCCAAATGGTGGTATGGCTCTCCAGACTATGCCGTCTGATAATCAGCTGGACTTAGAAGTAGATGGTGTTAAAGCTGCAGAGTCAACTACTGACTTTAAGAAAGATGATATGCTGGATACTGTTCCTGATGCTAGTGCTTCTAGAGGTTTACTCGATAACCAACATAATCAGAACCCTCT</gDNA_template>
            <first_frame> F  V  G  N  D  R  G  Y  R  H  P  S  R  S  N  V  T  P  S  G  Q  S  S  K  F  E  E  S  Q  N  A  K  E  L  G  K  S  T  A  F  G  I  P  K  K  A  Y  K  R  R  Y  R  P  R  P  N  R  D  S  A  R  S  S  S  S  D  I  A  R  G  G  H  D  T  S  L  P  S  Q  H  F  P  K  D  V  K  G  L  V  S  D  L  D  K  D  Q  N  S  S  L  N  I  A  Q  T  L  S  P  N  G  G  M  A  L  Q  T  M  P  S  D  N  Q  L  D  L  E  V  D  G  V  K  A  A  E  S  T  T  D  F  K  K  D  D  M  L  D  T  V  P  D  A  S  A  S  R  G  L  L  D  N  Q  H  N  Q  N  P   </first_frame>
            <second_frame>  L  L  V  M  I  G  A  I  D  I  P  V  G  A  M  L  L  H  Q  G  S  P  L  S  L  R  K  V  K  M  Q  K  N  *  V  S  L  L  L  L  A  S  L  K  K  H  T  S  E  D  T  G  P  G  Q  I  V  T  V  L  D  Q  V  H  L  I  *  L  V  V  V  M  T  H  L  C  L  H  N  I  F  P  K  M  *  K  D  L  F  L  I  *  I  R  I  K  T  R  R  *  T  L  H  R  L  L  V  Q  M  V  V  W  L  S  R  L  C  R  L  I  I  S  W  T  *  K  *  M  V  L  K  L  Q  S  Q  L  L  T  L  R  K  M  I  C  W  I  L  F  L  M  L  V  L  L  E  V  Y  S  I  T  N  I  I  R  T  L  </second_frame>
            <third_frame>   C  W  *  *  *  G  L  *  T  S  Q  *  E  Q  C  Y  S  I  R  A  V  L  *  V  *  G  K  S  K  C  K  R  I  R  *  V  Y  C  F  W  H  P  *  K  S  I  Q  A  K  I  Q  A  P  A  K  S  *  Q  C  *  I  K  F  I  *  Y  S  S  W  W  S  *  H  I  F  A  F  T  T  F  S  Q  R  C  K  R  T  C  F  *  F  R  *  G  S  K  L  V  V  E  H  C  T  D  S  *  S  K  W  W  Y  G  S  P  D  Y  A  V  *  *  S  A  G  L  R  S  R  W  C  *  S  C  R  V  N  Y  *  L  *  E  R  *  Y  A  G  Y  C  S  *  C  *  C  F  *  R  F  T  R  *  P  T  *  S  E  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53809" stop="54306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVGNDRGYRHPSRSNVTPSGQSSKFEESQNAKELGKSTAFGIPKKAYKRRYRPRPNRDSARSSSSDIARGGHDTSLPSQHFPKDVKGLVSDLDKDQNSSLNIAQTLSPNGGMALQTMPSDNQLDLEVDGVKAAESTTDFKKDDMLDTVPDASASRGLLDNQHNQNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="59362" PGL_stop="65531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59362" e_stop="59620"/>
            <exon e_start="59745" e_stop="59820"/>
            <exon e_start="59924" e_stop="60035"/>
            <exon e_start="61087" e_stop="61136"/>
            <exon e_start="61229" e_stop="61477"/>
            <exon e_start="62673" e_stop="62741"/>
            <exon e_start="62973" e_stop="63194"/>
            <exon e_start="63384" e_stop="63525"/>
            <exon e_start="63604" e_stop="63710"/>
            <exon e_start="63950" e_stop="64099"/>
            <exon e_start="64300" e_stop="64455"/>
            <exon e_start="64547" e_stop="64666"/>
            <exon e_start="64800" e_stop="64997"/>
            <exon e_start="65118" e_stop="65531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.806" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.985" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.733" acc_prob="0.096" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="59362" e_stop="59620" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.806" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59621" i_stop="59744" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59745" e_stop="59820" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.944">
            <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59924" e_stop="60035" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.013" acc_prob="0.686">
            <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61087" e_stop="61136" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61229" e_stop="61477" e_length="249"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61478" i_stop="62672" i_length="1195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62673" e_stop="62741" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62742" i_stop="62972" i_length="231"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62973" e_stop="63194" e_length="222"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63195" i_stop="63383" i_length="189"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63384" e_stop="63525" e_length="142"/>
          </exon>
          <intron i_serial="8" don_prob="0.733" acc_prob="0.096">
            <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63604" e_stop="63710" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63711" i_stop="63949" i_length="239"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63950" e_stop="64099" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.823" acc_prob="0.990">
            <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64300" e_stop="64455" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.886" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64456" i_stop="64546" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64547" e_stop="64666" e_length="120"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.934">
            <gDNA_intron_boundary i_start="64667" i_stop="64799" i_length="133"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="64800" e_stop="64997" e_length="198"/>
          </exon>
          <intron i_serial="13" don_prob="0.795" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="65118" e_stop="65531" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59362" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59507" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61477"/>
              <exon start="62673" stop="62741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59934" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61477"/>
              <exon start="62673" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61453" stop="61477"/>
              <exon start="62673" stop="62741"/>
              <exon start="62973" stop="63194"/>
              <exon start="63384" stop="63525"/>
              <exon start="63604" stop="63706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63188" stop="63194"/>
              <exon start="63384" stop="63525"/>
              <exon start="63604" stop="63710"/>
              <exon start="63950" stop="64099"/>
              <exon start="64300" stop="64428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63465" stop="63525"/>
              <exon start="63604" stop="63710"/>
              <exon start="63950" stop="64099"/>
              <exon start="64300" stop="64339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63981" stop="64099"/>
              <exon start="64300" stop="64455"/>
              <exon start="64547" stop="64666"/>
              <exon start="64800" stop="64997"/>
              <exon start="65118" stop="65349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64099"/>
              <exon start="64300" stop="64440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64800" stop="64997"/>
              <exon start="65118" stop="65531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64952" stop="64997"/>
              <exon start="65118" stop="65511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64959" stop="64997"/>
              <exon start="65118" stop="65525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCCTCCCTTGCGTGGTCCTATAAGCGCTATAAACTCGGAAGGCGGCATGATGGGGCAACCATCTGCTAGTGTTTTGGCCATGAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACG : CCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG : GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG : GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT : GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAG : ATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAG : AATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTG : GATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG : GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAG : GCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT : CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAG : CAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATCAGATAAGGTGGTATCCATCTTTGATGTCGAAAATGACAGGCAACTGCAGTCTTTCCAG : GGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG : TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTACAATATTC</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  S  L  P  C  V  V  L  *  A  L  *  T  R  K  A  A  *  W  G  N  H  L  L  V  F  W  P  *  K  C  T  R  N  K  *  S  T  L  I  P  W  T  Q  R  H  L  R  L  L  L  I  P  I  G  W  H  F  S  S  L  H  L  I  I  N   : A  S  W  Y  K  A  I  R  G  A  C  L  Q  H  C  S  K  C  K  G  A  L  R  W  L  R :   I  L  K  R  K  *  T  *  V  V  L  R  N  L  C  P  W  I  L  H  Q  F  M  G  K  L  F  Y  S  R  S  Q  D  S  A  V  Q  :  A  *  I  K  V  *  L  V  Y  H  *  R  A  G  R  *  L :   E  L  T  I  *  G  Q  V  W  V  C  K  Y  R  S  P  I  Y  R  T  K  I  N  I  F  W  H  H  N  N  S  S  R  L  L  H  R  L  K  H  K  V  T  *  I  P  L  A  M  D  M  V  D  Y  Q  E  V  T  S  M  Q  K  M  V  S  H  R  E  M  T  D  P  Y  A  L  Q  Y  N  Q  I  H  Q  R :   *  K  W  P  K  F  H  N  P  P  L  N  N  R  T  S  C  S  S  N  C  H  R :   M  E  E  K  G  S  S  I  R  R  L  D  L  P  I  V  L  A  P  E  I  L  L  A  L  H  Q  A  H  Q  H  Q  L  I  H  L  V  T  G  *  L  V  P  V  V  C  S  M  L  A  V  C  Q  K  A  *  *  C  M  E  E  M  E  L  V  V  *  H  P  L  Q  I  S  W :   M  T  W  R  R  L  E  T  L  V  P  W  K  I  T  W  S  H  F  Y  Q  M  M  G  E  M  V  I  S  M  E  Q  *  N  K  R  L  L  S  T  N  L  S  L  L  K  A  :  G  S  P  S  V  K  L  V  V  Y  A  Q  G  I  K  S  L  A  A  I  S  H  Q  M  E  S  C  S  L  V  P  D  M  T  K  R :   L  F  C  G  T  W  I  P  Y  K  R  R  P  P  Q  K  N  I  N  S  *  L  Q  M  S  G  S  G  L  I  R  L  S  L  Q  L  L  H  L  I  S  L  *  D  C  G  M  L  P  I :   L  A  T  V  *  I  H  T  P  G  I  L  L  M  L  C  R  W  I  S  I  R  K  R  M  I  C  S  V  S  V  I  A  T  M  R  F  G  T  G  L  L  V  H  S  H  V  L  E  C  Q  S :   K  E  A  V  H  K  *  D  S  S  Q  *  L  V  S  C  W  Q  L  H  Q  I  R  W  Y  P  S  L  M  S  K  M  T  G  N  C  S  L  S  R :   D  I  L  E  W  *  T  T  F  V  G  I  S  M  V  I  Y  W  H  Q  *  V  R  S  L  S  K  F  G  H  *  T  L  V  I  A  S  T  S  *  V  Q  T  E  I  S  S  T  L  V  Y  F  T  L  V  I  Q  L  Y  W  *  L  E  E  *  G :   L  W  S  C  G  T  W  L  R  I  K  A  *  Q  F  Q  H  M  K  T  L  S  P  L  *  H  S  H  Q  *  V  E  W  L  L  L  Q  V  M  T  V  L  *  S  Y  G  N  K  T  R  R  G  F  D  A  A  I  Y  M  R  F  R  C  *  G  K  V  R  L  C  C  F  S  V  L  L  I  R  K  Y  Q  F  F  C  L  L  V  I  T  L  E  F  G  L  L  K  A  S  *  A  Y  *  L  L  S  N  G  S  V  V  *  C  L  Q  L  F  S  V  I  N  N  *  *  *  H  D  I  K  F  K  L  I  S  A  V  Q  Y   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  N  P  S  L  A  W  S  Y  K  R  Y  K  L  G  R  R  H  D  G  A  T  I  C  *  C  F  G  H  E  N  V  R  G  T  N  E  A  P  S  F  L  G  L  R  D  I  F  A  S  Y  *  S  Q  *  D  G  T  S  Q  V  C  I  *  S  S  T  :  P  V  G  T  R  Q  F  G  E  H  V  C  S  I  A  A  N  A  R  A  P  S  D  G  C   : G  Y  *  N  G  S  E  L  E  W  Y  S  E  I  F  A  H  G  S  F  I  N  L  W  A  S  Y  S  T  V  E  V  R  T  Q  R  C  R :   L  K  S  R  Y  D  W  F  T  I  E  G  L  A  V  N   : W  N  *  P  F  E  A  K  C  G  F  A  S  T  E  A  Q  Y  T  E  P  K  S  I  S  F  G  I  T  T  T  A  A  G  S  C  T  G  S  S  T  R  *  P  E  F  P  *  L  W  I  W  W  I  T  K  R  *  L  Q  C  K  R  W  S  A  T  E  K  *  R  I  H  M  L  S  S  T  I  K  F  T  K   : D  E  N  G  P  N  S  T  I  L  L  S  T  T  G  P  V  A  A  A  T  A  T   : E  W  K  K  K  E  A  A  F  V  V  W  T  C  Q  *  Y  W  H  R  K  Y  C  W  P  F  T  K  L  T  S  I  N  S  Y  T  W  *  R  D  D  *  C  Q  *  S  A  A  C  W  Q  C  V  K  K  H  D  D  V  W  R  R  W  N  W  W  Y  S  I  L  Y  K  S  A   : G  *  L  G  D  V  W  R  H  W  F  P  G  R  *  R  G  V  I  F  I  K  *  W  G  R  W  *  Y  L  W  S  N  E  T  N  D  Y  *  A  Q  T  *  V  F  *  R  R :   V  L  L  R  *  S  W  L  Y  T  H  K  E  *  S  H  L  L  P  F  L  I  R  W  K  A  A  R  *  C  R  T  *  Q  K   : G  C  S  V  E  H  G  Y  L  T  N  G  D  H  P  R  R  T  S  I  L  D  Y  R  C  P  V  Q  A  *  F  D  S  A  C  N  C  F  I  *  *  V  C  E  I  V  G  C  C  Q   : S  W  L  L  F  E  F  I  H  R  A  F  F  S  C  Y  V  A  G  F  P  S  E  K  E  *  S  V  L  F  L  *  *  Q  R  *  D  S  V  L  D  Y  *  S  I  L  M  Y  S  S  V  K   : A  R  R  Q  C  T  S  E  I  P  A  N  N  W  S  A  A  G  S  C  I  R  *  G  G  I  H  L  *  C  R  K  *  Q  A  T  A  V  F  P   : G  T  Y  W  S  G  E  L  P  L  L  G  S  Q  W  *  S  T  G  I  S  K  *  G  V  C  Q  S  L  V  T  E  H  W  *  L  H  P  R  A  K  F  K  R  K  S  V  P  L  L  C  I  S  P  *  L  F  S  S  I  G  D  W  R  N  E   : V  F  G  A  V  E  H  G  *  E  *  K  H  D  N  S  S  T  *  K  H  C  R  R  S  S  T  V  T  S  E  W  N  G  C  F  C  K  S  *  Q  F  C  E  V  M  E  I  K  L  G  E  D  L  M  P  R  Y  I  C  A  S  G  V  R  E  K  S  V  Y  V  V  L  V  Y  C  *  S  E  N  I  N  F  S  A  C  *  S  S  H  *  S  L  V  C  L  K  Q  V  E  H  T  D  C  *  A  M  V  R  *  C  N  V  C  N  C  S  Q  *  L  T  T  N  N  N  M  I  S  S  L  S  L  F  R  L  Y  N  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  I  P  P  L  R  G  P  I  S  A  I  N  S  E  G  G  M  M  G  Q  P  S  A  S  V  L  A  M  K  M  Y  E  E  Q  M  K  H  P  H  S  L  D  S  E  T  S  S  P  L  I  D  P  N  R  M  A  L  L  K  S  A  S  N  H  Q  R :   Q  L  V  Q  G  N  S  G  S  M  S  A  A  L  Q  Q  M  Q  G  R  P  Q  M  A  A  :  D  I  K  T  E  V  N  L  S  G  T  Q  K  S  L  P  M  D  P  S  S  I  Y  G  Q  A  I  L  Q  S  K  S  G  L  S  G  A   : G  L  N  Q  G  M  T  G  L  P  L  K  G  W  P  L  T  :  G  I  D  H  L  R  P  S  V  G  L  Q  V  Q  K  P  N  I  Q  N  Q  N  Q  Y  L  L  A  S  Q  Q  Q  Q  Q  A  L  A  Q  A  Q  A  Q  G  N  L  N  S  P  S  Y  G  Y  G  G  L  P  R  G  N  F  N  A  K  D  G  Q  P  P  R  N  D  G  S  I  C  S  P  V  Q  S  N  S  P  K  :  M  K  M  A  Q  I  P  Q  S  S  S  Q  Q  Q  D  Q  L  Q  Q  Q  L  P  Q  :  N  G  R  K  R  K  Q  H  S  S  S  G  P  A  N  S  T  G  T  G  N  T  V  G  P  S  P  S  S  P  A  S  T  H  T  P  G  D  G  M  T  S  A  S  S  L  Q  H  V  G  S  V  S  K  S  M  M  M  Y  G  G  D  G  T  G  G  I  A  S  S  T  N  Q  L  :  D  D  L  E  T  F  G  D  I  G  S  L  E  D  N  V  E  S  F  L  S  N  D  G  G  D  G  N  I  Y  G  A  M  K  Q  T  I  T  E  H  K  P  E  S  S  K  G   : G  F  S  F  G  E  V  G  C  I  R  T  R  N  K  V  T  C  C  H  F  S  S  D  G  K  L  L  A  S  A  G  H  D  K  K  :  A  V  L  W  N  M  D  T  L  Q  T  E  T  T  P  E  E  H  Q  F  L  I  T  D  V  R  F  R  P  N  S  T  Q  L  A  T  A  S  F  D  K  S  V  R  L  W  D  A  A  N  :  P  G  Y  C  L  N  S  Y  T  G  H  S  S  H  V  M  S  L  D  F  H  P  K  K  N  D  L  F  C  F  C  D  S  N  D  E  I  R  Y  W  T  I  S  P  F  S  C  T  R  V  S  K  :  Q  G  G  S  A  Q  V  R  F  Q  P  I  T  G  Q  L  L  A  A  A  S  D  K  V  V  S  I  F  D  V  E  N  D  R  Q  L  Q  S  F  Q  :  G  H  T  G  V  V  N  Y  L  C  W  D  L  N  G  D  L  L  A  S  V  S  E  E  S  V  K  V  W  S  L  N  T  G  D  C  I  H  E  L  S  S  N  G  N  Q  F  H  S  C  V  F  H  P  S  Y  S  A  L  L  V  I  G  G  M  R  :  S  L  E  L  W  N  M  V  E  N  K  S  M  T  I  P  A  H  E  N  I  V  A  A  L  A  Q  S  P  V  S  G  M  V  A  S  A  S  H  D  S  S  V  K  L  W  K  *  N  *  E  R  I  *  C  R  D  I  Y  A  L  Q  V  L  G  K  S  P  S  M  L  F  *  C  I  V  D  Q  K  I  S  I  F  L  L  V  S  H  H  I  R  V  W  F  A  *  S  K  L  S  I  L  I  A  E  Q  W  F  G  S  V  M  S  A  T  V  L  S  D  *  Q  L  I  I  T  *  Y  Q  V  *  A  Y  F  G  C  T  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59364" stop="59620"/>
                    <exon start="59745" stop="59820"/>
                    <exon start="59924" stop="60035"/>
                    <exon start="61087" stop="61136"/>
                    <exon start="61229" stop="61477"/>
                    <exon start="62673" stop="62741"/>
                    <exon start="62973" stop="63194"/>
                    <exon start="63384" stop="63525"/>
                    <exon start="63604" stop="63710"/>
                    <exon start="63950" stop="64099"/>
                    <exon start="64300" stop="64455"/>
                    <exon start="64547" stop="64666"/>
                    <exon start="64800" stop="64997"/>
                    <exon start="65118" stop="65261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2049</number_coding_nucleotides>
                  <number_encoded_amino_acids>683</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFKIPPLRGPISAINSEGGMMGQPSASVLAMKMYEEQMKHPHSLDSETSSPLIDPNRMALLKSASNHQRQLVQGNSGSMSAALQQMQGRPQMAADIKTEVNLSGTQKSLPMDPSSIYGQAILQSKSGLSGAGLNQGMTGLPLKGWPLTGIDHLRPSVGLQVQKPNIQNQNQYLLASQQQQQALAQAQAQGNLNSPSYGYGGLPRGNFNAKDGQPPRNDGSICSPVQSNSPKMKMAQIPQSSSQQQDQLQQQLPQNGRKRKQHSSSGPANSTGTGNTVGPSPSSPASTHTPGDGMTSASSLQHVGSVSKSMMMYGGDGTGGIASSTNQLDDLETFGDIGSLEDNVESFLSNDGGDGNIYGAMKQTITEHKPESSKGGFSFGEVGCIRTRNKVTCCHFSSDGKLLASAGHDKKAVLWNMDTLQTETTPEEHQFLITDVRFRPNSTQLATASFDKSVRLWDAANPGYCLNSYTGHSSHVMSLDFHPKKNDLFCFCDSNDEIRYWTISPFSCTRVSKQGGSAQVRFQPITGQLLAAASDKVVSIFDVENDRQLQSFQGHTGVVNYLCWDLNGDLLASVSEESVKVWSLNTGDCIHELSSNGNQFHSCVFHPSYSALLVIGGMRSLELWNMVENKSMTIPAHENIVAALAQSPVSGMVASASHDSSVKLWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59362" e_stop="59620"/>
            <exon e_start="59745" e_stop="59820"/>
            <exon e_start="59924" e_stop="60035"/>
            <exon e_start="61087" e_stop="61136"/>
            <exon e_start="61229" e_stop="61477"/>
            <exon e_start="62673" e_stop="62741"/>
            <exon e_start="62958" e_stop="63194"/>
            <exon e_start="63384" e_stop="63525"/>
            <exon e_start="63604" e_stop="63710"/>
            <exon e_start="63950" e_stop="64099"/>
            <exon e_start="64300" e_stop="64455"/>
            <exon e_start="64547" e_stop="64666"/>
            <exon e_start="64800" e_stop="64997"/>
            <exon e_start="65118" e_stop="65531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.806" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.985" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.733" acc_prob="0.096" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="59362" e_stop="59620" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.806" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59621" i_stop="59744" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59745" e_stop="59820" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.944">
            <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59924" e_stop="60035" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.013" acc_prob="0.686">
            <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61087" e_stop="61136" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61229" e_stop="61477" e_length="249"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61478" i_stop="62672" i_length="1195"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="62673" e_stop="62741" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62742" i_stop="62957" i_length="216"/>
          </intron>
          <exon e_serial="7" e_score="0.966">
            <gDNA_exon_boundary e_start="62958" e_stop="63194" e_length="237"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63195" i_stop="63383" i_length="189"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63384" e_stop="63525" e_length="142"/>
          </exon>
          <intron i_serial="8" don_prob="0.733" acc_prob="0.096">
            <gDNA_intron_boundary i_start="63526" i_stop="63603" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63604" e_stop="63710" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63711" i_stop="63949" i_length="239"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63950" e_stop="64099" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.823" acc_prob="0.990">
            <gDNA_intron_boundary i_start="64100" i_stop="64299" i_length="200"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64300" e_stop="64455" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.886" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64456" i_stop="64546" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64547" e_stop="64666" e_length="120"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.934">
            <gDNA_intron_boundary i_start="64667" i_stop="64799" i_length="133"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="64800" e_stop="64997" e_length="198"/>
          </exon>
          <intron i_serial="13" don_prob="0.795" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64998" i_stop="65117" i_length="120"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="65118" e_stop="65531" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59362" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59507" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59620"/>
              <exon start="59745" stop="59820"/>
              <exon start="59924" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61477"/>
              <exon start="62673" stop="62741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59934" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61477"/>
              <exon start="62673" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62699" stop="62741"/>
              <exon start="62958" stop="63194"/>
              <exon start="63384" stop="63525"/>
              <exon start="63604" stop="63710"/>
              <exon start="63950" stop="64099"/>
              <exon start="64300" stop="64455"/>
              <exon start="64547" stop="64608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63188" stop="63194"/>
              <exon start="63384" stop="63525"/>
              <exon start="63604" stop="63710"/>
              <exon start="63950" stop="64099"/>
              <exon start="64300" stop="64428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63465" stop="63525"/>
              <exon start="63604" stop="63710"/>
              <exon start="63950" stop="64099"/>
              <exon start="64300" stop="64339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63981" stop="64099"/>
              <exon start="64300" stop="64455"/>
              <exon start="64547" stop="64666"/>
              <exon start="64800" stop="64997"/>
              <exon start="65118" stop="65349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64099"/>
              <exon start="64300" stop="64440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64800" stop="64997"/>
              <exon start="65118" stop="65531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64952" stop="64997"/>
              <exon start="65118" stop="65511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64959" stop="64997"/>
              <exon start="65118" stop="65525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCCTCCCTTGCGTGGTCCTATAAGCGCTATAAACTCGGAAGGCGGCATGATGGGGCAACCATCTGCTAGTGTTTTGGCCATGAAAATGTACGAGGAACAAATGAAGCACCCTCATTCCTTGGACTCAGAGACATCTTCGCCTCTTATTGATCCCAATAGGATGGCACTTCTCAAGTCTGCATCTAATCATCAACG : CCAGTTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG : GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG : GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT : GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAG : ATGAAAATGGCCCAAATTCCACAATCCTCCTCTCAACAACAGGACCAGTTGCAGCAGCAACTGCCACAG : CCTCCTGTGATTCAGAATGGAAGAAAAAGGAAGCAGCATTCGTCGTCTGGACCTGCCAATAGTACTGGCACCGGAAATACTGTTGGCCCTTCACCAAGCTCACCAGCATCAACTCATACACCTGGTGACGGGATGACTAGTGCCAGTAGTCTGCAGCATGTTGGCAGTGTGTCAAAAAGCATGATGATGTATGGAGGAGATGGAACTGGTGGTATAGCATCCTCTACAAATCAGCTG : GATGACTTGGAGACGTTTGGAGACATTGGTTCCCTGGAAGATAACGTGGAGTCATTTTTATCAAATGATGGGGGAGATGGTAATATCTATGGAGCAATGAAACAAACGATTACTGAGCACAAACCTGAGTCTTCTAAAGGCG : GGTTCTCCTTCGGTGAAGTTGGTTGTATACGCACAAGGAATAAAGTCACTTGCTGCCATTTCTCATCAGATGGAAAGCTGCTCGCTAGTGCCGGACATGACAAAAAG : GCTGTTCTGTGGAACATGGATACCTTACAAACGGAGACCACCCCAGAAGAACATCAATTCTTGATTACAGATGTCCGGTTCAGGCCTAATTCGACTCAGCTTGCAACTGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCTGCCAAT : CCTGGCTACTGTTTGAATTCATACACCGGGCATTCTTCTCATGTTATGTCGCTGGATTTCCATCCGAAAAAGAATGATCTGTTCTGTTTCTGTGATAGCAACGATGAGATTCGGTACTGGACTATTAGTCCATTCTCATGTACTCGAGTGTCAAAG : CAAGGAGGCAGTGCACAAGTGAGATTCCAGCCAATAACTGGTCAGCTGCTGGCAGCTGCATCAGATAAGGTGGTATCCATCTTTGATGTCGAAAATGACAGGCAACTGCAGTCTTTCCAG : GGACATACTGGAGTGGTGAACTACCTTTGTTGGGATCTCAATGGTGATCTACTGGCATCAGTAAGTGAGGAGTCTGTCAAAGTTTGGTCACTGAACACTGGTGATTGCATCCACGAGCTAAGTTCAAACGGAAATCAGTTCCACTCTTGTGTATTTCACCCTAGTTATTCAGCTCTATTGGTGATTGGAGGAATGAGG : TCTTTGGAGCTGTGGAACATGGTTGAGAATAAAAGCATGACAATTCCAGCACATGAAAACATTGTCGCCGCTCTAGCACAGTCACCAGTGAGTGGAATGGTTGCTTCTGCAAGTCATGACAGTTCTGTGAAGTTATGGAAATAAAACTAGGAGAGGATTTGATGCCGCGATATATATGCGCTTCAGGTGTTAGGGAAAAGTCCGTCTATGTTGTTTTAGTGTATTGTTGATCAGAAAATATCAATTTTTCTGCTTGTTAGTCATCACATTAGAGTTTGGTTTGCTTAAAGCAAGTTGAGCATACTGATTGCTGAGCAATGGTTCGGTAGTGTAATGTCTGCAACTGTTCTCAGTGATTAACAACTAATAATAACATGATATCAAGTTTAAGCTTATTTCGGCTGTACAATATTC</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  S  L  P  C  V  V  L  *  A  L  *  T  R  K  A  A  *  W  G  N  H  L  L  V  F  W  P  *  K  C  T  R  N  K  *  S  T  L  I  P  W  T  Q  R  H  L  R  L  L  L  I  P  I  G  W  H  F  S  S  L  H  L  I  I  N   : A  S  W  Y  K  A  I  R  G  A  C  L  Q  H  C  S  K  C  K  G  A  L  R  W  L  R :   I  L  K  R  K  *  T  *  V  V  L  R  N  L  C  P  W  I  L  H  Q  F  M  G  K  L  F  Y  S  R  S  Q  D  S  A  V  Q  :  A  *  I  K  V  *  L  V  Y  H  *  R  A  G  R  *  L :   E  L  T  I  *  G  Q  V  W  V  C  K  Y  R  S  P  I  Y  R  T  K  I  N  I  F  W  H  H  N  N  S  S  R  L  L  H  R  L  K  H  K  V  T  *  I  P  L  A  M  D  M  V  D  Y  Q  E  V  T  S  M  Q  K  M  V  S  H  R  E  M  T  D  P  Y  A  L  Q  Y  N  Q  I  H  Q  R :   *  K  W  P  K  F  H  N  P  P  L  N  N  R  T  S  C  S  S  N  C  H  S :   L  L  *  F  R  M  E  E  K  G  S  S  I  R  R  L  D  L  P  I  V  L  A  P  E  I  L  L  A  L  H  Q  A  H  Q  H  Q  L  I  H  L  V  T  G  *  L  V  P  V  V  C  S  M  L  A  V  C  Q  K  A  *  *  C  M  E  E  M  E  L  V  V  *  H  P  L  Q  I  S  W :   M  T  W  R  R  L  E  T  L  V  P  W  K  I  T  W  S  H  F  Y  Q  M  M  G  E  M  V  I  S  M  E  Q  *  N  K  R  L  L  S  T  N  L  S  L  L  K  A  :  G  S  P  S  V  K  L  V  V  Y  A  Q  G  I  K  S  L  A  A  I  S  H  Q  M  E  S  C  S  L  V  P  D  M  T  K  R :   L  F  C  G  T  W  I  P  Y  K  R  R  P  P  Q  K  N  I  N  S  *  L  Q  M  S  G  S  G  L  I  R  L  S  L  Q  L  L  H  L  I  S  L  *  D  C  G  M  L  P  I :   L  A  T  V  *  I  H  T  P  G  I  L  L  M  L  C  R  W  I  S  I  R  K  R  M  I  C  S  V  S  V  I  A  T  M  R  F  G  T  G  L  L  V  H  S  H  V  L  E  C  Q  S :   K  E  A  V  H  K  *  D  S  S  Q  *  L  V  S  C  W  Q  L  H  Q  I  R  W  Y  P  S  L  M  S  K  M  T  G  N  C  S  L  S  R :   D  I  L  E  W  *  T  T  F  V  G  I  S  M  V  I  Y  W  H  Q  *  V  R  S  L  S  K  F  G  H  *  T  L  V  I  A  S  T  S  *  V  Q  T  E  I  S  S  T  L  V  Y  F  T  L  V  I  Q  L  Y  W  *  L  E  E  *  G :   L  W  S  C  G  T  W  L  R  I  K  A  *  Q  F  Q  H  M  K  T  L  S  P  L  *  H  S  H  Q  *  V  E  W  L  L  L  Q  V  M  T  V  L  *  S  Y  G  N  K  T  R  R  G  F  D  A  A  I  Y  M  R  F  R  C  *  G  K  V  R  L  C  C  F  S  V  L  L  I  R  K  Y  Q  F  F  C  L  L  V  I  T  L  E  F  G  L  L  K  A  S  *  A  Y  *  L  L  S  N  G  S  V  V  *  C  L  Q  L  F  S  V  I  N  N  *  *  *  H  D  I  K  F  K  L  I  S  A  V  Q  Y   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  N  P  S  L  A  W  S  Y  K  R  Y  K  L  G  R  R  H  D  G  A  T  I  C  *  C  F  G  H  E  N  V  R  G  T  N  E  A  P  S  F  L  G  L  R  D  I  F  A  S  Y  *  S  Q  *  D  G  T  S  Q  V  C  I  *  S  S  T  :  P  V  G  T  R  Q  F  G  E  H  V  C  S  I  A  A  N  A  R  A  P  S  D  G  C   : G  Y  *  N  G  S  E  L  E  W  Y  S  E  I  F  A  H  G  S  F  I  N  L  W  A  S  Y  S  T  V  E  V  R  T  Q  R  C  R :   L  K  S  R  Y  D  W  F  T  I  E  G  L  A  V  N   : W  N  *  P  F  E  A  K  C  G  F  A  S  T  E  A  Q  Y  T  E  P  K  S  I  S  F  G  I  T  T  T  A  A  G  S  C  T  G  S  S  T  R  *  P  E  F  P  *  L  W  I  W  W  I  T  K  R  *  L  Q  C  K  R  W  S  A  T  E  K  *  R  I  H  M  L  S  S  T  I  K  F  T  K   : D  E  N  G  P  N  S  T  I  L  L  S  T  T  G  P  V  A  A  A  T  A  T   : A  S  C  D  S  E  W  K  K  K  E  A  A  F  V  V  W  T  C  Q  *  Y  W  H  R  K  Y  C  W  P  F  T  K  L  T  S  I  N  S  Y  T  W  *  R  D  D  *  C  Q  *  S  A  A  C  W  Q  C  V  K  K  H  D  D  V  W  R  R  W  N  W  W  Y  S  I  L  Y  K  S  A   : G  *  L  G  D  V  W  R  H  W  F  P  G  R  *  R  G  V  I  F  I  K  *  W  G  R  W  *  Y  L  W  S  N  E  T  N  D  Y  *  A  Q  T  *  V  F  *  R  R :   V  L  L  R  *  S  W  L  Y  T  H  K  E  *  S  H  L  L  P  F  L  I  R  W  K  A  A  R  *  C  R  T  *  Q  K   : G  C  S  V  E  H  G  Y  L  T  N  G  D  H  P  R  R  T  S  I  L  D  Y  R  C  P  V  Q  A  *  F  D  S  A  C  N  C  F  I  *  *  V  C  E  I  V  G  C  C  Q   : S  W  L  L  F  E  F  I  H  R  A  F  F  S  C  Y  V  A  G  F  P  S  E  K  E  *  S  V  L  F  L  *  *  Q  R  *  D  S  V  L  D  Y  *  S  I  L  M  Y  S  S  V  K   : A  R  R  Q  C  T  S  E  I  P  A  N  N  W  S  A  A  G  S  C  I  R  *  G  G  I  H  L  *  C  R  K  *  Q  A  T  A  V  F  P   : G  T  Y  W  S  G  E  L  P  L  L  G  S  Q  W  *  S  T  G  I  S  K  *  G  V  C  Q  S  L  V  T  E  H  W  *  L  H  P  R  A  K  F  K  R  K  S  V  P  L  L  C  I  S  P  *  L  F  S  S  I  G  D  W  R  N  E   : V  F  G  A  V  E  H  G  *  E  *  K  H  D  N  S  S  T  *  K  H  C  R  R  S  S  T  V  T  S  E  W  N  G  C  F  C  K  S  *  Q  F  C  E  V  M  E  I  K  L  G  E  D  L  M  P  R  Y  I  C  A  S  G  V  R  E  K  S  V  Y  V  V  L  V  Y  C  *  S  E  N  I  N  F  S  A  C  *  S  S  H  *  S  L  V  C  L  K  Q  V  E  H  T  D  C  *  A  M  V  R  *  C  N  V  C  N  C  S  Q  *  L  T  T  N  N  N  M  I  S  S  L  S  L  F  R  L  Y  N  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  I  P  P  L  R  G  P  I  S  A  I  N  S  E  G  G  M  M  G  Q  P  S  A  S  V  L  A  M  K  M  Y  E  E  Q  M  K  H  P  H  S  L  D  S  E  T  S  S  P  L  I  D  P  N  R  M  A  L  L  K  S  A  S  N  H  Q  R :   Q  L  V  Q  G  N  S  G  S  M  S  A  A  L  Q  Q  M  Q  G  R  P  Q  M  A  A  :  D  I  K  T  E  V  N  L  S  G  T  Q  K  S  L  P  M  D  P  S  S  I  Y  G  Q  A  I  L  Q  S  K  S  G  L  S  G  A   : G  L  N  Q  G  M  T  G  L  P  L  K  G  W  P  L  T  :  G  I  D  H  L  R  P  S  V  G  L  Q  V  Q  K  P  N  I  Q  N  Q  N  Q  Y  L  L  A  S  Q  Q  Q  Q  Q  A  L  A  Q  A  Q  A  Q  G  N  L  N  S  P  S  Y  G  Y  G  G  L  P  R  G  N  F  N  A  K  D  G  Q  P  P  R  N  D  G  S  I  C  S  P  V  Q  S  N  S  P  K  :  M  K  M  A  Q  I  P  Q  S  S  S  Q  Q  Q  D  Q  L  Q  Q  Q  L  P  Q  :  P  P  V  I  Q  N  G  R  K  R  K  Q  H  S  S  S  G  P  A  N  S  T  G  T  G  N  T  V  G  P  S  P  S  S  P  A  S  T  H  T  P  G  D  G  M  T  S  A  S  S  L  Q  H  V  G  S  V  S  K  S  M  M  M  Y  G  G  D  G  T  G  G  I  A  S  S  T  N  Q  L  :  D  D  L  E  T  F  G  D  I  G  S  L  E  D  N  V  E  S  F  L  S  N  D  G  G  D  G  N  I  Y  G  A  M  K  Q  T  I  T  E  H  K  P  E  S  S  K  G   : G  F  S  F  G  E  V  G  C  I  R  T  R  N  K  V  T  C  C  H  F  S  S  D  G  K  L  L  A  S  A  G  H  D  K  K  :  A  V  L  W  N  M  D  T  L  Q  T  E  T  T  P  E  E  H  Q  F  L  I  T  D  V  R  F  R  P  N  S  T  Q  L  A  T  A  S  F  D  K  S  V  R  L  W  D  A  A  N  :  P  G  Y  C  L  N  S  Y  T  G  H  S  S  H  V  M  S  L  D  F  H  P  K  K  N  D  L  F  C  F  C  D  S  N  D  E  I  R  Y  W  T  I  S  P  F  S  C  T  R  V  S  K  :  Q  G  G  S  A  Q  V  R  F  Q  P  I  T  G  Q  L  L  A  A  A  S  D  K  V  V  S  I  F  D  V  E  N  D  R  Q  L  Q  S  F  Q  :  G  H  T  G  V  V  N  Y  L  C  W  D  L  N  G  D  L  L  A  S  V  S  E  E  S  V  K  V  W  S  L  N  T  G  D  C  I  H  E  L  S  S  N  G  N  Q  F  H  S  C  V  F  H  P  S  Y  S  A  L  L  V  I  G  G  M  R  :  S  L  E  L  W  N  M  V  E  N  K  S  M  T  I  P  A  H  E  N  I  V  A  A  L  A  Q  S  P  V  S  G  M  V  A  S  A  S  H  D  S  S  V  K  L  W  K  *  N  *  E  R  I  *  C  R  D  I  Y  A  L  Q  V  L  G  K  S  P  S  M  L  F  *  C  I  V  D  Q  K  I  S  I  F  L  L  V  S  H  H  I  R  V  W  F  A  *  S  K  L  S  I  L  I  A  E  Q  W  F  G  S  V  M  S  A  T  V  L  S  D  *  Q  L  I  I  T  *  Y  Q  V  *  A  Y  F  G  C  T  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59364" stop="59620"/>
                    <exon start="59745" stop="59820"/>
                    <exon start="59924" stop="60035"/>
                    <exon start="61087" stop="61136"/>
                    <exon start="61229" stop="61477"/>
                    <exon start="62673" stop="62741"/>
                    <exon start="62958" stop="63194"/>
                    <exon start="63384" stop="63525"/>
                    <exon start="63604" stop="63710"/>
                    <exon start="63950" stop="64099"/>
                    <exon start="64300" stop="64455"/>
                    <exon start="64547" stop="64666"/>
                    <exon start="64800" stop="64997"/>
                    <exon start="65118" stop="65261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2064</number_coding_nucleotides>
                  <number_encoded_amino_acids>688</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFKIPPLRGPISAINSEGGMMGQPSASVLAMKMYEEQMKHPHSLDSETSSPLIDPNRMALLKSASNHQRQLVQGNSGSMSAALQQMQGRPQMAADIKTEVNLSGTQKSLPMDPSSIYGQAILQSKSGLSGAGLNQGMTGLPLKGWPLTGIDHLRPSVGLQVQKPNIQNQNQYLLASQQQQQALAQAQAQGNLNSPSYGYGGLPRGNFNAKDGQPPRNDGSICSPVQSNSPKMKMAQIPQSSSQQQDQLQQQLPQPPVIQNGRKRKQHSSSGPANSTGTGNTVGPSPSSPASTHTPGDGMTSASSLQHVGSVSKSMMMYGGDGTGGIASSTNQLDDLETFGDIGSLEDNVESFLSNDGGDGNIYGAMKQTITEHKPESSKGGFSFGEVGCIRTRNKVTCCHFSSDGKLLASAGHDKKAVLWNMDTLQTETTPEEHQFLITDVRFRPNSTQLATASFDKSVRLWDAANPGYCLNSYTGHSSHVMSLDFHPKKNDLFCFCDSNDEIRYWTISPFSCTRVSKQGGSAQVRFQPITGQLLAAASDKVVSIFDVENDRQLQSFQGHTGVVNYLCWDLNGDLLASVSEESVKVWSLNTGDCIHELSSNGNQFHSCVFHPSYSALLVIGGMRSLELWNMVENKSMTIPAHENIVAALAQSPVSGMVASASHDSSVKLWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59614" e_stop="59620"/>
            <exon e_start="59749" e_stop="59820"/>
            <exon e_start="59924" e_stop="60035"/>
            <exon e_start="61087" e_stop="61136"/>
            <exon e_start="61229" e_stop="61477"/>
            <exon e_start="61686" e_stop="61693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.806" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59614" e_stop="59620" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.806" acc_prob="0.982">
            <gDNA_intron_boundary i_start="59621" i_stop="59748" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59749" e_stop="59820" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.944">
            <gDNA_intron_boundary i_start="59821" i_stop="59923" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59924" e_stop="60035" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.013" acc_prob="0.686">
            <gDNA_intron_boundary i_start="60036" i_stop="61086" i_length="1051"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61087" e_stop="61136" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61137" i_stop="61228" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61229" e_stop="61477" e_length="249"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61478" i_stop="61685" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="61686" e_stop="61693" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59614" stop="59620"/>
              <exon start="59749" stop="59820"/>
              <exon start="59924" stop="60035"/>
              <exon start="61087" stop="61136"/>
              <exon start="61229" stop="61477"/>
              <exon start="61686" stop="61693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAACG : TTGGTACAAGGCAATTCGGGGAGCATGTCTGCAGCATTGCAGCAAATGCAAGGGCGCCCTCAGATGGCTGCG : GATATTAAAACGGAAGTGAACTTGAGTGGTACTCAGAAATCTTTGCCCATGGATCCTTCATCAATTTATGGGCAAGCTATTCTACAGTCGAAGTCAGGACTCAGCGGTGCAG : GCTTAAATCAAGGTATGACTGGTTTACCATTGAAGGGCTGGCCGTTAACT : GGAATTGACCATTTGAGGCCAAGTGTGGGTTTGCAAGTACAGAAGCCCAATATACAGAACCAAAATCAATATCTTTTGGCATCACAACAACAGCAGCAGGCTCTTGCACAGGCTCAAGCACAAGGTAACCTGAATTCCCCTAGCTATGGATATGGTGGATTACCAAGAGGTAACTTCAATGCAAAAGATGGTCAGCCACCGAGAAATGACGGATCCATATGCTCTCCAGTACAATCAAATTCACCAAAG : AGCTAAAA</gDNA_template>
            <first_frame> I  N   : V  G  T  R  Q  F  G  E  H  V  C  S  I  A  A  N  A  R  A  P  S  D  G  C   : G  Y  *  N  G  S  E  L  E  W  Y  S  E  I  F  A  H  G  S  F  I  N  L  W  A  S  Y  S  T  V  E  V  R  T  Q  R  C  R :   L  K  S  R  Y  D  W  F  T  I  E  G  L  A  V  N   : W  N  *  P  F  E  A  K  C  G  F  A  S  T  E  A  Q  Y  T  E  P  K  S  I  S  F  G  I  T  T  T  A  A  G  S  C  T  G  S  S  T  R  *  P  E  F  P  *  L  W  I  W  W  I  T  K  R  *  L  Q  C  K  R  W  S  A  T  E  K  *  R  I  H  M  L  S  S  T  I  K  F  T  K   : E  L  K </first_frame>
            <second_frame>  S  T  :  L  V  Q  G  N  S  G  S  M  S  A  A  L  Q  Q  M  Q  G  R  P  Q  M  A  A  :  D  I  K  T  E  V  N  L  S  G  T  Q  K  S  L  P  M  D  P  S  S  I  Y  G  Q  A  I  L  Q  S  K  S  G  L  S  G  A   : G  L  N  Q  G  M  T  G  L  P  L  K  G  W  P  L  T  :  G  I  D  H  L  R  P  S  V  G  L  Q  V  Q  K  P  N  I  Q  N  Q  N  Q  Y  L  L  A  S  Q  Q  Q  Q  Q  A  L  A  Q  A  Q  A  Q  G  N  L  N  S  P  S  Y  G  Y  G  G  L  P  R  G  N  F  N  A  K  D  G  Q  P  P  R  N  D  G  S  I  C  S  P  V  Q  S  N  S  P  K  :  S  *   </second_frame>
            <third_frame>   Q  R :   W  Y  K  A  I  R  G  A  C  L  Q  H  C  S  K  C  K  G  A  L  R  W  L  R :   I  L  K  R  K  *  T  *  V  V  L  R  N  L  C  P  W  I  L  H  Q  F  M  G  K  L  F  Y  S  R  S  Q  D  S  A  V  Q  :  A  *  I  K  V  *  L  V  Y  H  *  R  A  G  R  *  L :   E  L  T  I  *  G  Q  V  W  V  C  K  Y  R  S  P  I  Y  R  T  K  I  N  I  F  W  H  H  N  N  S  S  R  L  L  H  R  L  K  H  K  V  T  *  I  P  L  A  M  D  M  V  D  Y  Q  E  V  T  S  M  Q  K  M  V  S  H  R  E  M  T  D  P  Y  A  L  Q  Y  N  Q  I  H  Q  R :   A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59615" stop="59620"/>
                    <exon start="59749" stop="59820"/>
                    <exon start="59924" stop="60035"/>
                    <exon start="61087" stop="61136"/>
                    <exon start="61229" stop="61477"/>
                    <exon start="61686" stop="61691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLVQGNSGSMSAALQQMQGRPQMAADIKTEVNLSGTQKSLPMDPSSIYGQAILQSKSGLSGAGLNQGMTGLPLKGWPLTGIDHLRPSVGLQVQKPNIQNQNQYLLASQQQQQALAQAQAQGNLNSPSYGYGGLPRGNFNAKDGQPPRNDGSICSPVQSNSPKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="70849" PGL_stop="72793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70849" e_stop="70967"/>
            <exon e_start="72334" e_stop="72793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70849" e_stop="70967" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.994">
            <gDNA_intron_boundary i_start="70968" i_stop="72333" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72334" e_stop="72793" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70849" stop="70967"/>
              <exon start="72334" stop="72553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70854" stop="70967"/>
              <exon start="72334" stop="72585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70854" stop="70967"/>
              <exon start="72334" stop="72553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70859" stop="70967"/>
              <exon start="72334" stop="72793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70887" stop="70967"/>
              <exon start="72334" stop="72510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAACAAAGCAAAAATTAGGGTTTTCTTTGTGTTGCCGACCAACGACGATGATTTACGACGTGAATTCGCCGCTTTTCCGATCCTTCCTCAGCCAGAAGGGAGGCGCATCTGACAAGAG : GAAAACCGAAGAGCAGAAGCCCAAGGAACAGAGGCCAAAAGCAAGTGAAAACAAACCTGTTATGAATGAGTGAAAGCTGCCAGATGTTTAACTTATTTTAGCATATCTGGAATGTTGTTAAGCAACTCTTTTACAAGATGTGGAATATGTACTGAATTTGACATTTAAATGGATCATATATCTTTTAAGATATTTGATCCTTTACTTCTATTGGTTTTAAATTTGCGATCCAAGCTTTTGATTTTGGCACCAATTAGTGTCACGCCGGTGGTTTGACTAAGTTTTACAACTTGAGAATCAGTAGGGTAACCGTTGGAAGGAAGATCTTCTTTCTTTCTTTTTTTTAGGAATCACAAAACCGGTTTAGGCTTCTTTTAGTGCATTTAATTTAGGCTTCTTTCACTGATCGCATCGAGTATAATTTTAAGTGGGGATGATTGATTATTCCTCATATGAATTA</gDNA_template>
            <first_frame> *  T  K  Q  K  L  G  F  S  L  C  C  R  P  T  T  M  I  Y  D  V  N  S  P  L  F  R  S  F  L  S  Q  K  G  G  A  S  D  K  R :   K  T  E  E  Q  K  P  K  E  Q  R  P  K  A  S  E  N  K  P  V  M  N  E  *  K  L  P  D  V  *  L  I  L  A  Y  L  E  C  C  *  A  T  L  L  Q  D  V  E  Y  V  L  N  L  T  F  K  W  I  I  Y  L  L  R  Y  L  I  L  Y  F  Y  W  F  *  I  C  D  P  S  F  *  F  W  H  Q  L  V  S  R  R  W  F  D  *  V  L  Q  L  E  N  Q  *  G  N  R  W  K  E  D  L  L  S  F  F  F  L  G  I  T  K  P  V  *  A  S  F  S  A  F  N  L  G  F  F  H  *  S  H  R  V  *  F  *  V  G  M  I  D  Y  S  S  Y  E  L </first_frame>
            <second_frame>  E  Q  S  K  N  *  G  F  L  C  V  A  D  Q  R  R  *  F  T  T  *  I  R  R  F  S  D  P  S  S  A  R  R  E  A  H  L  T  R   : G  K  P  K  S  R  S  P  R  N  R  G  Q  K  Q  V  K  T  N  L  L  *  M  S  E  S  C  Q  M  F  N  L  F  *  H  I  W  N  V  V  K  Q  L  F  Y  K  M  W  N  M  Y  *  I  *  H  L  N  G  S  Y  I  F  *  D  I  *  S  F  T  S  I  G  F  K  F  A  I  Q  A  F  D  F  G  T  N  *  C  H  A  G  G  L  T  K  F  Y  N  L  R  I  S  R  V  T  V  G  R  K  I  F  F  L  S  F  F  *  E  S  Q  N  R  F  R  L  L  L  V  H  L  I  *  A  S  F  T  D  R  I  E  Y  N  F  K  W  G  *  L  I  I  P  H  M  N   </second_frame>
            <third_frame>   N  K  A  K  I  R  V  F  F  V  L  P  T  N  D  D  D  L  R  R  E  F  A  A  F  P  I  L  P  Q  P  E  G  R  R  I  *  Q  E  :  E  N  R  R  A  E  A  Q  G  T  E  A  K  S  K  *  K  Q  T  C  Y  E  *  V  K  A  A  R  C  L  T  Y  F  S  I  S  G  M  L  L  S  N  S  F  T  R  C  G  I  C  T  E  F  D  I  *  M  D  H  I  S  F  K  I  F  D  P  L  L  L  L  V  L  N  L  R  S  K  L  L  I  L  A  P  I  S  V  T  P  V  V  *  L  S  F  T  T  *  E  S  V  G  *  P  L  E  G  R  S  S  F  F  L  F  F  R  N  H  K  T  G  L  G  F  F  *  C  I  *  F  R  L  L  S  L  I  A  S  S  I  I  L  S  G  D  D  *  L  F  L  I  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0034C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="79663" PGL_stop="78968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79663" e_stop="79573"/>
            <exon e_start="79367" e_stop="78968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79663" e_stop="79573" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79572" i_stop="79368" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79367" e_stop="78968" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79663" stop="79573"/>
              <exon start="79367" stop="78968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGACTGGACTGAGGTACACACAAAACATCAAGGGTTGCTCCTTCGCAGCTTGTCATTCCTTCAGCATGCCTTTGAAACAACAACTTATAG : ACAAAGCTCGTTGTGCCTGAGGGTATCACATTGGGATGAGAAGGTGAACTTCCAGATTTTGGGAGCGAAGAGGGTGGTCAGCTCAAATTTTGTGTTGTGTATAGTATTTGTTGCCCTAGAGCCTCAGTAAGGTAGGAACAGATGTAGAGGTAGGTGTACAGGGTCTCTCTCTTCTCTTAGCTCTTTTAAATTACAGCTCATTTTTCTTAAATCCCCTTTCCACCTGCTCACCAAGGGAGGGCCTATTTGATTTTGTCCCCGTAGTCATCCCATGTATTATAGCCCTTTTTATATTCAATGGGGTAGTTTATCATTTTTATGGCCTAAGGCTGTGGAAAGTCTTGTAAATATTAGAGGCATGTGTATGCTCCATATTTGTCAATACAGTCATCATTTATGA</gDNA_template>
            <first_frame> *  T  G  L  R  Y  T  Q  N  I  K  G  C  S  F  A  A  C  H  S  F  S  M  P  L  K  Q  Q  L  I   : D  K  A  R  C  A  *  G  Y  H  I  G  M  R  R  *  T  S  R  F  W  E  R  R  G  W  S  A  Q  I  L  C  C  V  *  Y  L  L  P  *  S  L  S  K  V  G  T  D  V  E  V  G  V  Q  G  L  S  L  L  L  A  L  L  N  Y  S  S  F  F  L  N  P  L  S  T  C  S  P  R  E  G  L  F  D  F  V  P  V  V  I  P  C  I  I  A  L  F  I  F  N  G  V  V  Y  H  F  Y  G  L  R  L  W  K  V  L  *  I  L  E  A  C  V  C  S  I  F  V  N  T  V  I  I  Y   </first_frame>
            <second_frame>  R  L  D  *  G  T  H  K  T  S  R  V  A  P  S  Q  L  V  I  P  S  A  C  L  *  N  N  N  L  *  :  T  K  L  V  V  P  E  G  I  T  L  G  *  E  G  E  L  P  D  F  G  S  E  E  G  G  Q  L  K  F  C  V  V  Y  S  I  C  C  P  R  A  S  V  R  *  E  Q  M  *  R  *  V  Y  R  V  S  L  F  S  *  L  F  *  I  T  A  H  F  S  *  I  P  F  P  P  A  H  Q  G  R  A  Y  L  I  L  S  P  *  S  S  H  V  L  *  P  F  L  Y  S  M  G  *  F  I  I  F  M  A  *  G  C  G  K  S  C  K  Y  *  R  H  V  Y  A  P  Y  L  S  I  Q  S  S  F  M  </second_frame>
            <third_frame>   D  W  T  E  V  H  T  K  H  Q  G  L  L  L  R  S  L  S  F  L  Q  H  A  F  E  T  T  T  Y  R :   Q  S  S  L  C  L  R  V  S  H  W  D  E  K  V  N  F  Q  I  L  G  A  K  R  V  V  S  S  N  F  V  L  C  I  V  F  V  A  L  E  P  Q  *  G  R  N  R  C  R  G  R  C  T  G  S  L  S  S  L  S  S  F  K  L  Q  L  I  F  L  K  S  P  F  H  L  L  T  K  G  G  P  I  *  F  C  P  R  S  H  P  M  Y  Y  S  P  F  Y  I  Q  W  G  S  L  S  F  L  W  P  K  A  V  E  S  L  V  N  I  R  G  M  C  M  L  H  I  C  Q  Y  S  H  H  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79248" stop="79021"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSKVGTDVEVGVQGLSLLLALLNYSSFFLNPLSTCSPREGLFDFVPVVIPCIIALFIFNGVVYHFYGLRLWKVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79661" stop="79573"/>
                    <exon start="79367" stop="79238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DWTEVHTKHQGLLLRSLSFLQHAFETTTYRQSSLCLRVSHWDEKVNFQILGAKRVVSSNFVLCIVFVALEPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="80334" PGL_stop="79733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80334" e_stop="79733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="80334" e_stop="79733" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80334" stop="79976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80333" stop="79733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTCCTCCTAATTCTGACAGTACCAATCAAGCTCTTGCCTCATTGAGTGTATTGGGTCCTAATTTGCCCCACCAATCTGTTCCAACCTCAGTTTCCGGTTCTTCCAACCACCGGATGTTGATGCATCCACAGCAACAGGTGCAATTGCGGCCAAAGTTGACTCCTCAAAGTCAAGCAGCTCTTCAAGGTGTTCTGCAACGGAAACGTTCACTGAATTCTGAACCGTCAAACAAGTTGCAAGCTGGTGAACTTAAAAGTGAACAGCGCAATATTTGCAACACTTCACAGATAGGTAAAACGTCTCTTCAGGGCTCCAACAATTTAACTAATGCTGCAGAGGTATCTGCCGCCGGTGCTACTCAAATGAAGGTTGCAGTTCCGTCATTAGATTCAATTGGAAACCCACCAATAAATTCTGCTGCCAGCGAGACAGGGACAGAAGTCAACCAAGGAGTAAGCCAAATGCAATCTTCTGGTAAGTTGTCTCCTATTGGGCGTGATGCTGGTGTTAAATGGAAGCAAAAGTCTTCAGAGTTGCATCCTCCCTCGCTAGTGAACCAGCCCCAGTTACACCAGCAACAACAGCAGCGGCCGCTATT</gDNA_template>
            <first_frame> Q  I  P  P  N  S  D  S  T  N  Q  A  L  A  S  L  S  V  L  G  P  N  L  P  H  Q  S  V  P  T  S  V  S  G  S  S  N  H  R  M  L  M  H  P  Q  Q  Q  V  Q  L  R  P  K  L  T  P  Q  S  Q  A  A  L  Q  G  V  L  Q  R  K  R  S  L  N  S  E  P  S  N  K  L  Q  A  G  E  L  K  S  E  Q  R  N  I  C  N  T  S  Q  I  G  K  T  S  L  Q  G  S  N  N  L  T  N  A  A  E  V  S  A  A  G  A  T  Q  M  K  V  A  V  P  S  L  D  S  I  G  N  P  P  I  N  S  A  A  S  E  T  G  T  E  V  N  Q  G  V  S  Q  M  Q  S  S  G  K  L  S  P  I  G  R  D  A  G  V  K  W  K  Q  K  S  S  E  L  H  P  P  S  L  V  N  Q  P  Q  L  H  Q  Q  Q  Q  Q  R  P  L   </first_frame>
            <second_frame>  K  F  L  L  I  L  T  V  P  I  K  L  L  P  H  *  V  Y  W  V  L  I  C  P  T  N  L  F  Q  P  Q  F  P  V  L  P  T  T  G  C  *  C  I  H  S  N  R  C  N  C  G  Q  S  *  L  L  K  V  K  Q  L  F  K  V  F  C  N  G  N  V  H  *  I  L  N  R  Q  T  S  C  K  L  V  N  L  K  V  N  S  A  I  F  A  T  L  H  R  *  V  K  R  L  F  R  A  P  T  I  *  L  M  L  Q  R  Y  L  P  P  V  L  L  K  *  R  L  Q  F  R  H  *  I  Q  L  E  T  H  Q  *  I  L  L  P  A  R  Q  G  Q  K  S  T  K  E  *  A  K  C  N  L  L  V  S  C  L  L  L  G  V  M  L  V  L  N  G  S  K  S  L  Q  S  C  I  L  P  R  *  *  T  S  P  S  Y  T  S  N  N  S  S  G  R  Y  </second_frame>
            <third_frame>   N  S  S  *  F  *  Q  Y  Q  S  S  S  C  L  I  E  C  I  G  S  *  F  A  P  P  I  C  S  N  L  S  F  R  F  F  Q  P  P  D  V  D  A  S  T  A  T  G  A  I  A  A  K  V  D  S  S  K  S  S  S  S  S  R  C  S  A  T  E  T  F  T  E  F  *  T  V  K  Q  V  A  S  W  *  T  *  K  *  T  A  Q  Y  L  Q  H  F  T  D  R  *  N  V  S  S  G  L  Q  Q  F  N  *  C  C  R  G  I  C  R  R  C  Y  S  N  E  G  C  S  S  V  I  R  F  N  W  K  P  T  N  K  F  C  C  Q  R  D  R  D  R  S  Q  P  R  S  K  P  N  A  I  F  W  *  V  V  S  Y  W  A  *  C  W  C  *  M  E  A  K  V  F  R  V  A  S  S  L  A  S  E  P  A  P  V  T  P  A  T  T  A  A  A  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80334" stop="79735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPPNSDSTNQALASLSVLGPNLPHQSVPTSVSGSSNHRMLMHPQQQVQLRPKLTPQSQAALQGVLQRKRSLNSEPSNKLQAGELKSEQRNICNTSQIGKTSLQGSNNLTNAAEVSAAGATQMKVAVPSLDSIGNPPINSAASETGTEVNQGVSQMQSSGKLSPIGRDAGVKWKQKSSELHPPSLVNQPQLHQQQQQRPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87062" PGL_stop="84908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87062" e_stop="86826"/>
            <exon e_start="85888" e_stop="85822"/>
            <exon e_start="85451" e_stop="84908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87062" e_stop="86826" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86825" i_stop="85889" i_length="937"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85888" e_stop="85822" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="85451" e_stop="84908" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87062" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87062" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87054" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277873" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87025" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86826"/>
              <exon start="85888" stop="85829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86987" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86983" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="84952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86937" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86883" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350149" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86883" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86883" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86883" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350845" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86882" stop="86826"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="85822"/>
              <exon start="85451" stop="84908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTAACCCAACAACCCCTTCCTCCTATTCTACAATTTACAAACAATCATCAATACACTCCTCCCTCTTCAAGCCCTTTCTTATATAGGGTCTTGAAGAGCCAAAATCAACATCTGATTATTCTTTCTGTTTTCTAACAAAACAGAATTTGTCAATAAATGGGTAAAGTCTTCAATTTAGCTGAGGTCTCCCAGCACAACAATGCCAAGGATTGTTGGCTCATTATTAGTGGCAAG : GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG : GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAAGGAAAAATTTGTTACATGAACAACATCAAAACAACCAAACATAATTGGAAATAGATAACTTA</gDNA_template>
            <first_frame> L  L  T  Q  Q  P  L  P  P  I  L  Q  F  T  N  N  H  Q  Y  T  P  P  S  S  S  P  F  L  Y  R  V  L  K  S  Q  N  Q  H  L  I  I  L  S  V  F  *  Q  N  R  I  C  Q  *  M  G  K  V  F  N  L  A  E  V  S  Q  H  N  N  A  K  D  C  W  L  I  I  S  G  K  :  V  Y  D  V  T  K  F  L  E  D  H  P  G  G  D  D  V  L  L  S  A  T   : G  K  D  A  T  D  D  F  E  D  V  G  H  S  S  S  A  R  A  M  L  D  E  Y  Y  V  G  E  I  D  S  S  T  I  P  T  S  V  K  Y  T  P  P  K  Q  P  H  Y  N  Q  D  K  T  T  E  F  I  I  K  I  L  Q  F  L  V  P  L  I  I  L  G  G  A  V  G  L  R  F  Y  T  K  Q  S  T  S  *  R  L  N  N  R  *  C  Y  N  N  K  *  N  Q  R  D  V  T  R  T  V  S  Y  L  F  L  C  S  H  F  *  L  F  H  L  V  V  I  Y  I  N  L  R  L  V  N  L  L  Y  L  D  L  V  T  S  S  M  G  K  F  R  R  W  S  Y  N  *  *  L  Y  C  I  K  F  E  G  K  I  C  Y  M  N  N  I  K  T  T  K  H  N  W  K  *  I  T   </first_frame>
            <second_frame>  Y  *  P  N  N  P  F  L  L  F  Y  N  L  Q  T  I  I  N  T  L  L  P  L  Q  A  L  S  Y  I  G  S  *  R  A  K  I  N  I  *  L  F  F  L  F  S  N  K  T  E  F  V  N  K  W  V  K  S  S  I  *  L  R  S  P  S  T  T  M  P  R  I  V  G  S  L  L  V  A  R :   C  M  M  *  Q  N  S  W  R  I  T  Q  V  V  M  M  F  C  C  L  Q  Q  :  G  R  M  Q  L  M  I  L  R  M  S  D  T  A  V  V  L  E  Q  C  W  T  S  I  M  *  E  K  S  I  L  Q  P  S  Q  Q  V  *  S  T  L  L  Q  S  S  L  I  T  T  R  T  K  Q  Q  S  S  S  L  R  S  S  S  S  W  F  L  *  L  F  W  E  V  L  L  A  S  A  S  T  P  N  S  Q  L  L  E  D  *  I  I  G  D  A  I  T  T  N  E  I  N  E  T  L  Q  E  Q  L  A  T  F  F  S  V  P  I  F  N  F  F  I  L  L  L  Y  I  S  I  Y  A  S  *  T  C  F  I  W  I  L  S  L  P  R  W  V  N  F  V  G  G  H  I  T  N  S  F  I  A  S  N  S  K  E  K  F  V  T  *  T  T  S  K  Q  P  N  I  I  G  N  R  *  L  </second_frame>
            <third_frame>   I  N  P  T  T  P  S  S  Y  S  T  I  Y  K  Q  S  S  I  H  S  S  L  F  K  P  F  L  I  *  G  L  E  E  P  K  S  T  S  D  Y  S  F  C  F  L  T  K  Q  N  L  S  I  N  G  *  S  L  Q  F  S  *  G  L  P  A  Q  Q  C  Q  G  L  L  A  H  Y  *  W  Q   : G  V  *  C  D  K  I  L  G  G  S  P  R  W  *  *  C  F  V  V  C  N  R :   E  G  C  N  *  *  F  *  G  C  R  T  Q  Q  *  C  S  S  N  V  G  R  V  L  C  R  R  N  R  F  F  N  H  P  N  K  C  K  V  H  S  S  K  A  A  S  L  Q  P  G  Q  N  N  R  V  H  H  *  D  P  P  V  L  G  S  F  D  Y  F  G  R  C  C  W  P  P  L  L  H  Q  T  V  N  F  L  K  I  E  *  S  V  M  L  *  Q  Q  M  K  S  T  R  R  Y  K  N  S  *  L  P  F  S  L  F  P  F  L  T  F  S  S  C  C  Y  I  Y  Q  S  T  P  R  E  L  A  L  F  G  S  C  H  F  L  D  G  *  I  S  *  V  V  I  *  L  I  A  L  L  H  Q  I  R  R  K  N  L  L  H  E  Q  H  Q  N  N  Q  T  *  L  E  I  D  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86903" stop="86826"/>
                    <exon start="85888" stop="85822"/>
                    <exon start="85451" stop="85195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKVFNLAEVSQHNNAKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGEIDSSTIPTSVKYTPPKQPHYNQDKTTEFIIKILQFLVPLIILGGAVGLRFYTKQSTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86526" e_stop="86484"/>
            <exon e_start="85888" e_stop="85822"/>
            <exon e_start="85451" e_stop="84908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="0.985"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86526" e_stop="86484" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86483" i_stop="85889" i_length="595"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="85888" e_stop="85822" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85821" i_stop="85452" i_length="370"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="85451" e_stop="84908" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86526" stop="86484"/>
              <exon start="85888" stop="85822"/>
              <exon start="85451" stop="85034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="85822"/>
              <exon start="85451" stop="84908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGAGGGGTGAATGGGATAGGGTGTGGCTGATCTCTTCTT : GTGTATGATGTGACAAAATTCTTGGAGGATCACCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAG : GGAAGGATGCAACTGATGATTTTGAGGATGTCGGACACAGCAGTAGTGCTCGAGCAATGTTGGACGAGTATTATGTAGGAGAAATCGATTCTTCAACCATCCCAACAAGTGTAAAGTACACTCCTCCAAAGCAGCCTCATTACAACCAGGACAAAACAACAGAGTTCATCATTAAGATCCTCCAGTTCTTGGTTCCTTTGATTATTTTGGGAGGTGCTGTTGGCCTCCGCTTCTACACCAAACAGTCAACTTCTTGAAGATTGAATAATCGGTGATGCTATAACAACAAATGAAATCAACGAGACGTTACAAGAACAGTTAGCTACCTTTTTCTCTGTTCCCATTTTTAACTTTTTCATCTTGTTGTTATATATATCAATCTACGCCTCGTGAACTTGCTTTATTTGGATCTTGTCACTTCCTCGATGGGTAAATTTCGTAGGTGGTCATATAACTAATAGCTTTATTGCATCAAATTCGAAGGAAAAATTTGTTACATGAACAACATCAAAACAACCAAACATAATTGGAAATAGATAACTTA</gDNA_template>
            <first_frame> G  K  R  G  E  W  D  R  V  W  L  I  S  S   : C  V  *  C  D  K  I  L  G  G  S  P  R  W  *  *  C  F  V  V  C  N  R :   E  G  C  N  *  *  F  *  G  C  R  T  Q  Q  *  C  S  S  N  V  G  R  V  L  C  R  R  N  R  F  F  N  H  P  N  K  C  K  V  H  S  S  K  A  A  S  L  Q  P  G  Q  N  N  R  V  H  H  *  D  P  P  V  L  G  S  F  D  Y  F  G  R  C  C  W  P  P  L  L  H  Q  T  V  N  F  L  K  I  E  *  S  V  M  L  *  Q  Q  M  K  S  T  R  R  Y  K  N  S  *  L  P  F  S  L  F  P  F  L  T  F  S  S  C  C  Y  I  Y  Q  S  T  P  R  E  L  A  L  F  G  S  C  H  F  L  D  G  *  I  S  *  V  V  I  *  L  I  A  L  L  H  Q  I  R  R  K  N  L  L  H  E  Q  H  Q  N  N  Q  T  *  L  E  I  D  N  L </first_frame>
            <second_frame>  E  R  G  V  N  G  I  G  C  G  *  S  L  L  :  V  Y  D  V  T  K  F  L  E  D  H  P  G  G  D  D  V  L  L  S  A  T   : G  K  D  A  T  D  D  F  E  D  V  G  H  S  S  S  A  R  A  M  L  D  E  Y  Y  V  G  E  I  D  S  S  T  I  P  T  S  V  K  Y  T  P  P  K  Q  P  H  Y  N  Q  D  K  T  T  E  F  I  I  K  I  L  Q  F  L  V  P  L  I  I  L  G  G  A  V  G  L  R  F  Y  T  K  Q  S  T  S  *  R  L  N  N  R  *  C  Y  N  N  K  *  N  Q  R  D  V  T  R  T  V  S  Y  L  F  L  C  S  H  F  *  L  F  H  L  V  V  I  Y  I  N  L  R  L  V  N  L  L  Y  L  D  L  V  T  S  S  M  G  K  F  R  R  W  S  Y  N  *  *  L  Y  C  I  K  F  E  G  K  I  C  Y  M  N  N  I  K  T  T  K  H  N  W  K  *  I  T   </second_frame>
            <third_frame>   K  E  G  *  M  G  *  G  V  A  D  L  F  L :   C  M  M  *  Q  N  S  W  R  I  T  Q  V  V  M  M  F  C  C  L  Q  Q  :  G  R  M  Q  L  M  I  L  R  M  S  D  T  A  V  V  L  E  Q  C  W  T  S  I  M  *  E  K  S  I  L  Q  P  S  Q  Q  V  *  S  T  L  L  Q  S  S  L  I  T  T  R  T  K  Q  Q  S  S  S  L  R  S  S  S  S  W  F  L  *  L  F  W  E  V  L  L  A  S  A  S  T  P  N  S  Q  L  L  E  D  *  I  I  G  D  A  I  T  T  N  E  I  N  E  T  L  Q  E  Q  L  A  T  F  F  S  V  P  I  F  N  F  F  I  L  L  L  Y  I  S  I  Y  A  S  *  T  C  F  I  W  I  L  S  L  P  R  W  V  N  F  V  G  G  H  I  T  N  S  F  I  A  S  N  S  K  E  K  F  V  T  *  T  T  S  K  Q  P  N  I  I  G  N  R  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86492" stop="86484"/>
                    <exon start="85888" stop="85822"/>
                    <exon start="85451" stop="85195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGEIDSSTIPTSVKYTPPKQPHYNQDKTTEFIIKILQFLVPLIILGGAVGLRFYTKQSTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="86317" e_stop="86060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86317" e_stop="86060" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86317" stop="86060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGATGTGCACCTGGTGACATATGTTGTAGGGTGTGTCTACTATGTTTCCAAATTTTGTTTACATGCTTGACTCCTCATTCTCTACATCATTGTCCACTTACCTTTTTGCTCCAAAAGAATGTTTTCCTTCACATCAAACACATTTGAGAAAATCAGTGATAGCTAGTTTAGAAGGTTGGTTTCAAATCTTATAATTTCTGTTAATTTAAAAAGACTAATCAAGTAGCTAGCATCACCTGTCATCGACTTGGATCAC</gDNA_template>
            <first_frame> S  D  V  H  L  V  T  Y  V  V  G  C  V  Y  Y  V  S  K  F  C  L  H  A  *  L  L  I  L  Y  I  I  V  H  L  P  F  C  S  K  R  M  F  S  F  T  S  N  T  F  E  K  I  S  D  S  *  F  R  R  L  V  S  N  L  I  I  S  V  N  L  K  R  L  I  K  *  L  A  S  P  V  I  D  L  D  H </first_frame>
            <second_frame>  P  M  C  T  W  *  H  M  L  *  G  V  S  T  M  F  P  N  F  V  Y  M  L  D  S  S  F  S  T  S  L  S  T  Y  L  F  A  P  K  E  C  F  P  S  H  Q  T  H  L  R  K  S  V  I  A  S  L  E  G  W  F  Q  I  L  *  F  L  L  I  *  K  D  *  S  S  S  *  H  H  L  S  S  T  W  I   </second_frame>
            <third_frame>   R  C  A  P  G  D  I  C  C  R  V  C  L  L  C  F  Q  I  L  F  T  C  L  T  P  H  S  L  H  H  C  P  L  T  F  L  L  Q  K  N  V  F  L  H  I  K  H  I  *  E  N  Q  *  *  L  V  *  K  V  G  F  K  S  Y  N  F  C  *  F  K  K  T  N  Q  V  A  S  I  T  C  H  R  L  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0034C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92478" PGL_stop="91954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92478" e_stop="91954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="92478" e_stop="91954" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92478" stop="91954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92478" stop="91967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92478" stop="92040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCTAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTAAAAAATGTCCCTTAAAACGTATAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTTAGAGACTGGATTTCCACTGAAGGCTCTGTGACGGTCCGTTACACATGTGACGGTCCGTCCTGCCATTTCATTACGAAGTTCAGAGAGTCGATTTTCAGTACCTAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAACCTATTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACAGGTCGTTACAATA</gDNA_template>
            <first_frame> F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  K  K  C  P  L  K  R  I  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  W  I  S  T  E  G  S  V  T  V  R  Y  T  C  D  G  P  S  C  H  F  I  T  K  F  R  E  S  I  F  S  T  *  F  Q  I  F  *  V  F  *  N  E  T  L  R  R  S  V  V  S  M  T  V  R  R  G  V  R  R  L  N  L  F  F  Q  K  *  N  L  L  F  K  T  T  K  Q  V  V  T  I </first_frame>
            <second_frame>  F  L  I  P  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  L  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  A  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  L  E  T  G  F  P  L  K  A  L  *  R  S  V  T  H  V  T  V  R  P  A  I  S  L  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  R  P  C  D  G  P  S  C  P  *  R  S  V  V  G  S  V  A  S  T  Y  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  Q   </second_frame>
            <third_frame>   F  L  F  Q  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  *  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  *  K  M  S  L  K  T  Y  K  E  I  R  P  R  L  G  L  R  N  L  R  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  *  R  L  D  F  H  *  R  L  C  D  G  P  L  H  M  *  R  S  V  L  P  F  H  Y  E  V  Q  R  V  D  F  Q  Y  L  I  S  D  F  L  S  V  L  K  R  D  P  A  T  V  R  R  V  H  D  G  P  S  W  G  P  S  P  Q  P  I  F  P  E  I  K  S  A  V  Q  N  D  *  T  G  R  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92325" stop="92098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSKKCPLKRIKKSDPDWDYATCDGPSCLRRSVLQVVARFRDWISTEGSVTVRYTCDGPSCHFITKFRESIFST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="110355" PGL_stop="92561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110355" e_stop="109903"/>
            <exon e_start="92999" e_stop="92561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="110355" e_stop="109903" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109902" i_stop="93000" i_length="16903"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="92999" e_stop="92561" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110355" stop="110019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110184" stop="109903"/>
              <exon start="92999" stop="92561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCTCCTAAATCTACGTGTCGGTTCGTGACACCCGATCTCCTAAATCTACGTGTCGGTTCATGACACCCGATCCTCTAAATCTAC : GTGTCGATTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTTCCAAGGCATCATCAATCTCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATCATTAACAGAGAAATTAGGGTTTTGTAAGATTTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTACATAATTACATTCATGCAAGCATACAACTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACTGAAGACTA</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  Y  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  A  P  L  N  L  R  V  G  L  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  L  L  N  L  R  V  G  S  *  H  P  I  L  *  I  Y  :  V  S  I  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  N  L  L  L  S  I  H  Q  A  F  F  L  S  K  A  S  S  I  S  L  F  *  F  I  T  P  S  F  I  P  R  P  H  H  *  Q  R  N  *  G  F  V  R  F  W  D  S  I  T  S  S  C  L  Y  N  H  N  Y  I  I  T  F  M  Q  A  Y  N  *  A  H  S  R  V  Y  N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  R  N  H  N  L  P  P  L  K  T  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  T  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  L  P  *  I  Y  V  S  V  C  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  L  L  N  L  R  V  G  S  *  H  P  I  S  *  I  Y  V  S  V  H  D  T  R  S  S  K  S  T :   C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  I  S  F  Y  Q  F  I  K  P  S  F  F  P  R  H  H  Q  S  H  Y  F  S  S  S  R  L  L  L  Y  Q  G  L  I  I  N  R  E  I  R  V  L  *  D  F  G  I  Q  *  L  H  H  A  Y  I  I  T  I  T  *  L  H  S  C  K  H  T  T  K  H  I  A  G  F  T  I  L  S  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  E  T  I  T  Y  L  H  *  R  L </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  P  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  S  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  M  T  P  D  P  L  N  L   : R  V  D  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  S  P  S  I  N  S  S  S  L  L  S  F  Q  G  I  I  N  L  I  I  L  V  H  H  A  F  F  Y  T  K  A  S  S  L  T  E  K  L  G  F  C  K  I  L  G  F  N  N  F  I  M  L  I  *  S  Q  L  H  N  Y  I  H  A  S  I  Q  L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  E  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92935" stop="92741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYVSVRDTRSPKSTCRFVTPDPLISFYQFIKPSFFPRHHQSHYFSSSRLLLYQGLIINREIRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="92561" PGL_stop="92965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92561" e_stop="92965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="92561" e_stop="92965" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92561" stop="92965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAGTTGTATGCTTGCATGAATGTAATTATGTAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAAATCTTACAAAACCCTAATTTCTCTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGAAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  S  C  M  L  A  *  M  *  L  C  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  I  L  Q  N  P  N  F  S  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  K  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  S  L  Q  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  V  V  C  L  H  E  C  N  Y  V  I  V  I  I  *  A  *  *  S  Y  *  I  P  K  S  Y  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   V  F  S  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  M  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  N  L  T  K  P  *  F  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  E  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0034C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="96916" PGL_stop="98180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96916" e_stop="96986"/>
            <exon e_start="97329" e_stop="97545"/>
            <exon e_start="97628" e_stop="97734"/>
            <exon e_start="97943" e_stop="98180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.632" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.545" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96916" e_stop="96986" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.632" acc_prob="0.983">
            <gDNA_intron_boundary i_start="96987" i_stop="97328" i_length="342"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97329" e_stop="97545" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.545">
            <gDNA_intron_boundary i_start="97546" i_stop="97627" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97628" e_stop="97734" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="97735" i_stop="97942" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="97943" e_stop="98180" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96916" stop="96986"/>
              <exon start="97329" stop="97545"/>
              <exon start="97628" stop="97734"/>
              <exon start="97943" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96917" stop="96986"/>
              <exon start="97329" stop="97545"/>
              <exon start="97628" stop="97734"/>
              <exon start="97943" stop="98140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTAGAGACCAAAGAGTTGAGCTCATGAAAAAAGTTTCCTCTGAATTTGATGGAAAACTTAACATTCTT : ATAAACAATGTTGGAACAAACATTTGGAAACACTCTATTGATTATAATGCTGAAGATTATGCACACATGATGGCTACAAATTTAGAATCTTCATTCCATTTCAGTCAACTTGCTCATCCTCTTCTTAAATCATCTGGATCTGGAAGTATTGTTTTCACTGCCTCTGTTGCTGGTCTTGTCCATGTCTCTGGTACTTCTATTTACGGAGCAACAAAAG : CGGGAATGATTCAGCTTACACGAAATCTGGCTTGTGAATGGGGAAGAGATGGTATTCGTGTTAATGCGGTTGCACCATGTTACACAAACACACCCCTCGTGAAACAT : TTGCTCAAGGATAAAGAATTTTCGGATGCCTTAATATCAAGAGTTCCTCTTGGGCGTTCAGGAGAAGTGGAAGAAGTTTCATCTCTCATCGCATATCTCTGTCTTCCTGGTGCTTCCTATGTCACTGGACAGATTATTGCAGTTGACGGAGGATTCACAGTCTATGGCTTCCAACAGCCTGGCTATTAAGTTATACTTGTTGTTGTTTGAATAAAAGTCTTTACTTGTTGTTGTTCGA</gDNA_template>
            <first_frame> L  V  E  T  K  E  L  S  S  *  K  K  F  P  L  N  L  M  E  N  L  T  F  L :   *  T  M  L  E  Q  T  F  G  N  T  L  L  I  I  M  L  K  I  M  H  T  *  W  L  Q  I  *  N  L  H  S  I  S  V  N  L  L  I  L  F  L  N  H  L  D  L  E  V  L  F  S  L  P  L  L  L  V  L  S  M  S  L  V  L  L  F  T  E  Q  Q  K  :  R  E  *  F  S  L  H  E  I  W  L  V  N  G  E  E  M  V  F  V  L  M  R  L  H  H  V  T  Q  T  H  P  S  *  N  I :   C  S  R  I  K  N  F  R  M  P  *  Y  Q  E  F  L  L  G  V  Q  E  K  W  K  K  F  H  L  S  S  H  I  S  V  F  L  V  L  P  M  S  L  D  R  L  L  Q  L  T  E  D  S  Q  S  M  A  S  N  S  L  A  I  K  L  Y  L  L  L  F  E  *  K  S  L  L  V  V  V  R </first_frame>
            <second_frame>  L  *  R  P  K  S  *  A  H  E  K  S  F  L  *  I  *  W  K  T  *  H  S   : Y  K  Q  C  W  N  K  H  L  E  T  L  Y  *  L  *  C  *  R  L  C  T  H  D  G  Y  K  F  R  I  F  I  P  F  Q  S  T  C  S  S  S  S  *  I  I  W  I  W  K  Y  C  F  H  C  L  C  C  W  S  C  P  C  L  W  Y  F  Y  L  R  S  N  K  S :   G  N  D  S  A  Y  T  K  S  G  L  *  M  G  K  R  W  Y  S  C  *  C  G  C  T  M  L  H  K  H  T  P  R  E  T   : F  A  Q  G  *  R  I  F  G  C  L  N  I  K  S  S  S  W  A  F  R  R  S  G  R  S  F  I  S  H  R  I  S  L  S  S  W  C  F  L  C  H  W  T  D  Y  C  S  *  R  R  I  H  S  L  W  L  P  T  A  W  L  L  S  Y  T  C  C  C  L  N  K  S  L  Y  L  L  L  F   </second_frame>
            <third_frame>   C  R  D  Q  R  V  E  L  M  K  K  V  S  S  E  F  D  G  K  L  N  I  L  :  I  N  N  V  G  T  N  I  W  K  H  S  I  D  Y  N  A  E  D  Y  A  H  M  M  A  T  N  L  E  S  S  F  H  F  S  Q  L  A  H  P  L  L  K  S  S  G  S  G  S  I  V  F  T  A  S  V  A  G  L  V  H  V  S  G  T  S  I  Y  G  A  T  K   : A  G  M  I  Q  L  T  R  N  L  A  C  E  W  G  R  D  G  I  R  V  N  A  V  A  P  C  Y  T  N  T  P  L  V  K  H  :  L  L  K  D  K  E  F  S  D  A  L  I  S  R  V  P  L  G  R  S  G  E  V  E  E  V  S  S  L  I  A  Y  L  C  L  P  G  A  S  Y  V  T  G  Q  I  I  A  V  D  G  G  F  T  V  Y  G  F  Q  Q  P  G  Y  *  V  I  L  V  V  V  *  I  K  V  F  T  C  C  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96918" stop="96986"/>
                    <exon start="97329" stop="97545"/>
                    <exon start="97628" stop="97734"/>
                    <exon start="97943" stop="98131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRDQRVELMKKVSSEFDGKLNILINNVGTNIWKHSIDYNAEDYAHMMATNLESSFHFSQLAHPLLKSSGSGSIVFTASVAGLVHVSGTSIYGATKAGMIQLTRNLACEWGRDGIRVNAVAPCYTNTPLVKHLLKDKEFSDALISRVPLGRSGEVEEVSSLIAYLCLPGASYVTGQIIAVDGGFTVYGFQQPGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="103021" PGL_stop="107917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103021" e_stop="103239"/>
            <exon e_start="103625" e_stop="103832"/>
            <exon e_start="104044" e_stop="104260"/>
            <exon e_start="106154" e_stop="106260"/>
            <exon e_start="107508" e_stop="107917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="0.775"/>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.775">
            <gDNA_exon_boundary e_start="103021" e_stop="103239" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="103240" i_stop="103624" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103625" e_stop="103832" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="103833" i_stop="104043" i_length="211"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104044" e_stop="104260" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.974">
            <gDNA_intron_boundary i_start="104261" i_stop="106153" i_length="1893"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106154" e_stop="106260" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106261" i_stop="107507" i_length="1247"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="107508" e_stop="107917" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103021" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103113" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103119" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106260"/>
              <exon start="107508" stop="107646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103120" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103125" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103128" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103168" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103188" stop="103239"/>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106260"/>
              <exon start="107508" stop="107602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106260"/>
              <exon start="107508" stop="107534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103625" stop="103832"/>
              <exon start="104044" stop="104260"/>
              <exon start="106154" stop="106260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104234" stop="104260"/>
              <exon start="106154" stop="106260"/>
              <exon start="107508" stop="107917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265163" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNAAGCTTATAAGTAGTAGTATTTATAGGCCACTTAGGTAGCTTATTTTTGTAATTAAGCAATTAGTATTTTTGTAATATAGTTTCAATCAATCTCTTGAATAATCAATTAGCTATACAAAAGAAACACACAATATGGCAAAGGTTGGAGGATCCAGATGGTCACTTACTGGTTTGGTTGCTCTTGTAACTGGAGGCACTTATGGAATTGG : GCATGCAATTGTGGAGGAGCTTTGTGAACTTGGTGCAAAAGTGTATACATGTTCAAGGAATGAATCAATCCTCAATGAATGTTTGAAAAAGTGGACAGATAAAGGCCTTCAAGTAAAAGGTTGTGTATGTGATGTATCATCTAAAGAGCAAAGAGTACAACTCATGGAAAAAGTTTCCTTGGAATTTGATGGAAAACTCAACATTCTT : ATAAACAATGTTGGAACAAACATTTGGAAGCCTACTACTGAATATACTGGTGAAGATTATGCACATATGATGGCTACAAATTTAGAATCTTCATTCCATTTGAGTCAACTTGCTAATCCTCTTCTTAAATCATCTGGAGTTGGAAGTATTGTATTCTTGTCTTCTGTTGCTGGTCTTGTCCACCTATCTGGCACTTCTATTTATGGAGCAACAAAAG : GAGCAATGAATCAACTTACACGAAATTTGGCTTGTGAATGGGCAAAAGATGGAATTCGTGTTAATGGGGTTGCACCCTGGTTCATTAACACTCCCCTCGTCGAACAA : GTGCTGGGAGATAAAGAATTTCTGGAAGGGGTAGTATCAAGAACTCCTCTTAAGCGTCCTGGAGAAGTTGAAGAAGTTTCATCAATGGTAGCTTATCTTTGTCTTCCTGCTGCTTCCTATGTTACCGGTCAAGTTATTGCAGTTGATGGAGGATTCACTGTTTATGGCTTCCAACAGCCTGGCTATTAACTATTACTAGTCCGACAAAAAAAAAATTGCAATGAATTTGATAATAATGATCGAGTGATATTACTTTTTTAGCTCGAACAAATTGGGCTTGTTTGAATATGGTAGCATAGAATTTCTAGCTACCTACTAGTACTTTTGTAATAATGTTGTATTTAATTTGAGCATGTTTGGTGTGTTTTGTTTGAATTGAGGGTTTATGAGATGATCCTTTTTCCTTATTT</gDNA_template>
            <first_frame> F  F  F  *  A  Y  K  *  *  Y  L  *  A  T  *  V  A  Y  F  C  N  *  A  I  S  I  F  V  I  *  F  Q  S  I  S  *  I  I  N  *  L  Y  K  R  N  T  Q  Y  G  K  G  W  R  I  Q  M  V  T  Y  W  F  G  C  S  C  N  W  R  H  L  W  N  W  :  A  C  N  C  G  G  A  L  *  T  W  C  K  S  V  Y  M  F  K  E  *  I  N  P  Q  *  M  F  E  K  V  D  R  *  R  P  S  S  K  R  L  C  M  *  C  I  I  *  R  A  K  S  T  T  H  G  K  S  F  L  G  I  *  W  K  T  Q  H  S   : Y  K  Q  C  W  N  K  H  L  E  A  Y  Y  *  I  Y  W  *  R  L  C  T  Y  D  G  Y  K  F  R  I  F  I  P  F  E  S  T  C  *  S  S  S  *  I  I  W  S  W  K  Y  C  I  L  V  F  C  C  W  S  C  P  P  I  W  H  F  Y  L  W  S  N  K  R :   S  N  E  S  T  Y  T  K  F  G  L  *  M  G  K  R  W  N  S  C  *  W  G  C  T  L  V  H  *  H  S  P  R  R  T   : S  A  G  R  *  R  I  S  G  R  G  S  I  K  N  S  S  *  A  S  W  R  S  *  R  S  F  I  N  G  S  L  S  L  S  S  C  C  F  L  C  Y  R  S  S  Y  C  S  *  W  R  I  H  C  L  W  L  P  T  A  W  L  L  T  I  T  S  P  T  K  K  K  L  Q  *  I  *  *  *  *  S  S  D  I  T  F  L  A  R  T  N  W  A  C  L  N  M  V  A  *  N  F  *  L  P  T  S  T  F  V  I  M  L  Y  L  I  *  A  C  L  V  C  F  V  *  I  E  G  L  *  D  D  P  F  S  L  F </first_frame>
            <second_frame>  F  F  F  K  L  I  S  S  S  I  Y  R  P  L  R  *  L  I  F  V  I  K  Q  L  V  F  L  *  Y  S  F  N  Q  S  L  E  *  S  I  S  Y  T  K  E  T  H  N  M  A  K  V  G  G  S  R  W  S  L  T  G  L  V  A  L  V  T  G  G  T  Y  G  I  G :   H  A  I  V  E  E  L  C  E  L  G  A  K  V  Y  T  C  S  R  N  E  S  I  L  N  E  C  L  K  K  W  T  D  K  G  L  Q  V  K  G  C  V  C  D  V  S  S  K  E  Q  R  V  Q  L  M  E  K  V  S  L  E  F  D  G  K  L  N  I  L  :  I  N  N  V  G  T  N  I  W  K  P  T  T  E  Y  T  G  E  D  Y  A  H  M  M  A  T  N  L  E  S  S  F  H  L  S  Q  L  A  N  P  L  L  K  S  S  G  V  G  S  I  V  F  L  S  S  V  A  G  L  V  H  L  S  G  T  S  I  Y  G  A  T  K   : G  A  M  N  Q  L  T  R  N  L  A  C  E  W  A  K  D  G  I  R  V  N  G  V  A  P  W  F  I  N  T  P  L  V  E  Q  :  V  L  G  D  K  E  F  L  E  G  V  V  S  R  T  P  L  K  R  P  G  E  V  E  E  V  S  S  M  V  A  Y  L  C  L  P  A  A  S  Y  V  T  G  Q  V  I  A  V  D  G  G  F  T  V  Y  G  F  Q  Q  P  G  Y  *  L  L  L  V  R  Q  K  K  N  C  N  E  F  D  N  N  D  R  V  I  L  L  F  *  L  E  Q  I  G  L  V  *  I  W  *  H  R  I  S  S  Y  L  L  V  L  L  *  *  C  C  I  *  F  E  H  V  W  C  V  L  F  E  L  R  V  Y  E  M  I  L  F  P  Y   </second_frame>
            <third_frame>   F  F  L  S  L  *  V  V  V  F  I  G  H  L  G  S  L  F  L  *  L  S  N  *  Y  F  C  N  I  V  S  I  N  L  L  N  N  Q  L  A  I  Q  K  K  H  T  I  W  Q  R  L  E  D  P  D  G  H  L  L  V  W  L  L  L  *  L  E  A  L  M  E  L   : G  M  Q  L  W  R  S  F  V  N  L  V  Q  K  C  I  H  V  Q  G  M  N  Q  S  S  M  N  V  *  K  S  G  Q  I  K  A  F  K  *  K  V  V  Y  V  M  Y  H  L  K  S  K  E  Y  N  S  W  K  K  F  P  W  N  L  M  E  N  S  T  F  L :   *  T  M  L  E  Q  T  F  G  S  L  L  L  N  I  L  V  K  I  M  H  I  *  W  L  Q  I  *  N  L  H  S  I  *  V  N  L  L  I  L  F  L  N  H  L  E  L  E  V  L  Y  S  C  L  L  L  L  V  L  S  T  Y  L  A  L  L  F  M  E  Q  Q  K  :  E  Q  *  I  N  L  H  E  I  W  L  V  N  G  Q  K  M  E  F  V  L  M  G  L  H  P  G  S  L  T  L  P  S  S  N  K :   C  W  E  I  K  N  F  W  K  G  *  Y  Q  E  L  L  L  S  V  L  E  K  L  K  K  F  H  Q  W  *  L  I  F  V  F  L  L  L  P  M  L  P  V  K  L  L  Q  L  M  E  D  S  L  F  M  A  S  N  S  L  A  I  N  Y  Y  *  S  D  K  K  K  I  A  M  N  L  I  I  M  I  E  *  Y  Y  F  F  S  S  N  K  L  G  L  F  E  Y  G  S  I  E  F  L  A  T  Y  *  Y  F  C  N  N  V  V  F  N  L  S  M  F  G  V  F  C  L  N  *  G  F  M  R  *  S  F  F  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103133" stop="103239"/>
                    <exon start="103625" stop="103832"/>
                    <exon start="104044" stop="104260"/>
                    <exon start="106154" stop="106260"/>
                    <exon start="107508" stop="107696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISYTKETHNMAKVGGSRWSLTGLVALVTGGTYGIGHAIVEELCELGAKVYTCSRNESILNECLKKWTDKGLQVKGCVCDVSSKEQRVQLMEKVSLEFDGKLNILINNVGTNIWKPTTEYTGEDYAHMMATNLESSFHLSQLANPLLKSSGVGSIVFLSSVAGLVHLSGTSIYGATKGAMNQLTRNLACEWAKDGIRVNGVAPWFINTPLVEQVLGDKEFLEGVVSRTPLKRPGEVEEVSSMVAYLCLPAASYVTGQVIAVDGGFTVYGFQQPGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="110029" PGL_stop="110507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110029" e_stop="110507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="110029" e_stop="110507" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110029" stop="110266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110030" stop="110507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTTCGGATATCAGGGTGAGCTAATACTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  Q  T  D  T  *  I  *  G  S  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  V  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  I  T  S  D  I  R  V  S  *  Y  F  *  L  G   </first_frame>
            <second_frame>  H  K  P  T  R  R  F  R  G  A  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  W  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  T  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  E  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  G  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  I  L  A  S  L  H  Y  F  G  Y  Q  G  E  L  I  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110292" stop="110507"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAVIFDSTVILASLHYFGYQGELILLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="110821" PGL_stop="111106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110821" e_stop="111106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="110821" e_stop="111106" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110821" stop="111106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGAACAGTAGGGGGGCGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCCTTCTTTTGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCATTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  S  R  G  A  P  L  L  F  F  K  R  L  *  D  F  R  K  I  S  F  F  L  S  F  F  C  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  D  I  T  E  P  A  I  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  P  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  Q  G  R  I  *  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  E  E  Q  *  G  G  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  I  L  S  F  L  L  L  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  K  A  G  Y  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110870" stop="111082"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFPSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQQGRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="111545" PGL_stop="111113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111545" e_stop="111113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="111545" e_stop="111113" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111545" stop="111113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGGCCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGATTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCCCTTCCTCAAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTTCCGTTGCTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  F  T  A  L  V  S  D  G  L  G  A  R  P  L  P  Q  E  D  V  L  P  R  P  L  P  R  P  L  S  V  A  L  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  L  E  V  L  V  Q  K  T  L  E  V  P  G  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  D  S  L  P  *  Y  Q  M  G  *  V  L  V  P  F  L  K  R  T  S  S  H  D  L  Y  H  G  L  F  P  L  L  F </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  W  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  I  H  C  P  S  I  R  W  A  R  C  S  S  P  S  S  R  G  R  P  P  T  T  S  T  T  A  S  F  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111390" stop="111115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWRCWCRKHWRCLALIRQPTKISENLIDHLWGRLGWQFLILHLFSFPFLTLSYYFFSRWRIHCPSIRWARCSSPSSRGRPPTTSTTASFRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0034C13.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111311" stop="111114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSSFCTCSVSPSSPSLTTSSVGGGFTALVSDGLGARPLPQEDVLPRPLPRPLSVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 279 chains have been computed
$ 
$ memory statistics:
$ 592544 bytes spliced alignments in total
$ 146 spliced alignments have been stored
$ 4058 bytes was the average size of a spliced alignment
$ 37720 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1571 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 305 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-28 10:01:58
-->
