<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:35:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543221" ref_strand="+" ref_description="SGN-E543221 [TUS-64-O20]">
      <seq>actgaattcatttgtagttccaaaattacttctctcagacttacaatagtaatgaactgttgttctgatccgattcgagttgattcattttaagttttaagcaactcccaaattagtactgaggttaatgggcttgaagggtttgacactataccatttgaagagtcatttgcagaagtatagacttggacagctggcgaagaaacaaaatgcagccgaggcaaacaaagagaacagcggggactcctctggacagtttggtttgcattcctcaggccccagtacctcttcattaagtatgaactttatgcaaggagaggtcccaaccacggaggcagtaatgtctcagattcaagttcagaaaatattacaggagcagcttcaggtgcaacagaaactgcaaatgcgaatagaagcacaaggaagcaacaacctctcatctccctgctttcgattcacctctgtcaaatttaatggattatggagagaaccgggactacaacatagagctaccaacgtctagttacatcgtggagaaagaacaaaagaaggatatgaatctttataagctcaaagaagattccattaatttcgatttgaactccagaagtagctatatatgatttttgtcaataattgttctgttcacacaagattattacatagtacattatttgctgaatttttcattcattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24555" stop="22167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24255" g_stop="24158" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24157" i_stop="23698" i_length="460">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23697" g_stop="23621" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="175" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23620" i_stop="23533" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23532" g_stop="23469" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23468" i_stop="23294" i_length="175">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23293" g_stop="23218" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="315" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23217" i_stop="23094" i_length="124">
            <donor d_prob="0.543" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23093" g_stop="23024" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="385" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23023" i_stop="22860" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22859" g_stop="22823" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="422" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22822" i_stop="22749" i_length="74">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22748" g_stop="22466" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="705" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E543221" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24255" e_stop="24158"/>
          <exon e_start="23697" e_stop="23621"/>
          <exon e_start="23532" e_stop="23469"/>
          <exon e_start="23293" e_stop="23218"/>
          <exon e_start="23093" e_stop="23024"/>
          <exon e_start="22859" e_stop="22823"/>
          <exon e_start="22748" e_stop="22466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTTGTAAGTTGGTTTGTAGTGATTTTTGATATATGCAGTAAAGTTGGACCATCAGCTTCATTAAGATTGTTTGGATAAAATAGTAGTGTCTGCAGTCCTTTTTAGCTCTTGATTGTTATAACCTTATCAATTGAATTGAGTATTTTCTATGTTATATTGTTATAACCTTAATGAGTCAACCATTAGATTGATCCAATTCTGTTTCTGGATATCCTGTTATATTCATTGAAGTGATCCTGTTTTAGATCGATGTCCTTTTTGAGATAAAAATTGTTAGTTGGGTGACCATATGAGAATATGTGGAAAGTACCAAAATCATGTCAAGGCTGTCAATTCTGCAAATTGGAGTATCCTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGAAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAGGTAAAAGTTTATTACTGCGCCTTGTTTTTTTTCAATTTATTCGTTCTCTGGTAATTACTTTCGATGTCTTTTTACCTTGTGTTTTCAGAAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCGGTGAGTTTGCTATAATTTTGAGAATTTCCAACAAATAGCATAGTACTGTGCTACAGAAACCCTTGCCTATTTGATTGTAGAAATAGTCAACTTGTAGGTTCATAAAAGCTTCTCGTGTGTTGATTCGTTATGATGAAATCTTATCATGATTGCATTGTGTTCTGCGATTTCACAGGGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGGGTAGGTAACATGTTGTGTGCATTTGGTTTGCTAATGCCTCAATACACCTTATCATTAGGCTATATTTTACTCTGTTAATCAATTGACTTCTCGCTAATGAATGGCTTCATCTCTGTCTAAACAGAGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAGGTATGCATACACTTGTTTGCTAGCACTATTCGTATTCCTAATGCGTGTAAACCATGAAAACTTACAAACGCTGGATGTGATGATCCTAATCCTGTTCTCCTAGCTATACATTTATTGGCTTTAGTTCGCCCATTCTAATAGCAAGATTAACTCTCGCTAATCAGGTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAGGTAAGTATTTGCAAGCAATATTAGATAAAGCTAAGAAGAGCCTCCCAGACAACATGAACTCTCCTAATGCACAGGAAGCAACAACCTCTCATCTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACTCCAGAAGTAGCTATATATGATTTTTGTCAATAATTGTTCTGTTCACACAAGATTATTACATAGTACATTATTTGCTGAATTTTTCATTCATTGAAAAAACAC</genome_strand>
        <mrna_strand>ACTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAG........................................................................................AAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCG...............................................................................................................................................................................GGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGG............................................................................................................................AGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAG....................................................................................................................................................................GTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAG..........................................................................GAAGCAACAACCTCTCATCTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACTCCAGAAGTAGCTATATATGATTTTTGTCAATAATTGTTCTGTTCACACAAGATTATTACATAGTACATTATTTGCTGAATTTTTCATTCATTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543220" ref_strand="+" ref_description="SGN-E543220 [TUS-64-O20](-)">
      <seq>actgaattcatttgtagttccaaaattacttctctcagacttacaatagtaatgaactgttgttctgatccgattcgagttgattcattttaagttttaagcaactcccaaattagtactgaggttaatgggcttgaagggtttgacactataccatttgaagagtcatttgcagaagtatagacttggacagctggcgaagaaacaaaatgcagccgaggcaaacaaagagaacagcggggactcctctggacagtttggtttgcattcctcaggccccagtacctcttcattaagtatgaactttatgcaaggagaggtcccaaccacggaggcagtaatgtctcagattcaagttcagaaaatattacaggagcagcttcaggtgcaacagaaactgcaaatgcgaatagaagcacaaggaagcaacaacctctcatctccctgctttcgattcacctctgtcaaatttaatggattatggagagaaccgggactacaacatagagctaccaacgtctagttacatcgtggagaaagaacaaaagaaggatatgaatctttataagctcaaagaagattccattaatttcgatttgaactccagaagtagctatatatgatttttgtcaataattgttctgttcacacaagattattacatagtacattatttgctgaatttttcattcatgaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24555" stop="22162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24255" g_stop="24158" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24157" i_stop="23698" i_length="460">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23697" g_stop="23621" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="175" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23620" i_stop="23533" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23532" g_stop="23469" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23468" i_stop="23294" i_length="175">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23293" g_stop="23218" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="315" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23217" i_stop="23094" i_length="124">
            <donor d_prob="0.543" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23093" g_stop="23024" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="385" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23023" i_stop="22860" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22859" g_stop="22823" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="422" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22822" i_stop="22749" i_length="74">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22748" g_stop="22469" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="701" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="714"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E543220" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24255" e_stop="24158"/>
          <exon e_start="23697" e_stop="23621"/>
          <exon e_start="23532" e_stop="23469"/>
          <exon e_start="23293" e_stop="23218"/>
          <exon e_start="23093" e_stop="23024"/>
          <exon e_start="22859" e_stop="22823"/>
          <exon e_start="22748" e_stop="22469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTTGTAAGTTGGTTTGTAGTGATTTTTGATATATGCAGTAAAGTTGGACCATCAGCTTCATTAAGATTGTTTGGATAAAATAGTAGTGTCTGCAGTCCTTTTTAGCTCTTGATTGTTATAACCTTATCAATTGAATTGAGTATTTTCTATGTTATATTGTTATAACCTTAATGAGTCAACCATTAGATTGATCCAATTCTGTTTCTGGATATCCTGTTATATTCATTGAAGTGATCCTGTTTTAGATCGATGTCCTTTTTGAGATAAAAATTGTTAGTTGGGTGACCATATGAGAATATGTGGAAAGTACCAAAATCATGTCAAGGCTGTCAATTCTGCAAATTGGAGTATCCTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGAAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAGGTAAAAGTTTATTACTGCGCCTTGTTTTTTTTCAATTTATTCGTTCTCTGGTAATTACTTTCGATGTCTTTTTACCTTGTGTTTTCAGAAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCGGTGAGTTTGCTATAATTTTGAGAATTTCCAACAAATAGCATAGTACTGTGCTACAGAAACCCTTGCCTATTTGATTGTAGAAATAGTCAACTTGTAGGTTCATAAAAGCTTCTCGTGTGTTGATTCGTTATGATGAAATCTTATCATGATTGCATTGTGTTCTGCGATTTCACAGGGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGGGTAGGTAACATGTTGTGTGCATTTGGTTTGCTAATGCCTCAATACACCTTATCATTAGGCTATATTTTACTCTGTTAATCAATTGACTTCTCGCTAATGAATGGCTTCATCTCTGTCTAAACAGAGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAGGTATGCATACACTTGTTTGCTAGCACTATTCGTATTCCTAATGCGTGTAAACCATGAAAACTTACAAACGCTGGATGTGATGATCCTAATCCTGTTCTCCTAGCTATACATTTATTGGCTTTAGTTCGCCCATTCTAATAGCAAGATTAACTCTCGCTAATCAGGTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAGGTAAGTATTTGCAAGCAATATTAGATAAAGCTAAGAAGAGCCTCCCAGACAACATGAACTCTCCTAATGCACAGGAAGCAACAACCTCTCATCTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACTCCAGAAGTAGCTATATATGATTTTTGTCAATAATTGTTCTGTTCACACAAGATTATTACATAGTACATTATTTGCTGAATTTTTCATTCATTGAAAAAA</genome_strand>
        <mrna_strand>ACTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAG........................................................................................AAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCG...............................................................................................................................................................................GGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGG............................................................................................................................AGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAG....................................................................................................................................................................GTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAG..........................................................................GAAGCAACAACCTCTCATCTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACTCCAGAAGTAGCTATATATGATTTTTGTCAATAATTGTTCTGTTCACACAAGATTATTACATAGTACATTATTTGCTGAATTTTTCATTCA-TGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303876" ref_strand="+" ref_description="SGN-E303876 [cLEX-4-K1]">
      <seq>ctgaattcatttgtagttccaaaattacttctctcagacttacaatagtaatgaactgttgttctgatccgattcgagttgattcattttaagttttaagcaactcccaaattagtactgaggttaatgggcttgaagggtttgacactataccatttgaagagtcatttgcagaagtatagacttggacagctggcgaagaaacaaaatgcagccgaggcaaacaaagagaacagcggggactcctctggacagtttggtttgcattcctcaggccccagtacctcttcattaagtatgaactttatgcaaggagaggtcccaaccacggaggcagtaatgtctcagattcaagttcagaaaatattacaggagcagcttcaggtgcaacagaaactgcaaatgcgaatagaagcacaaggaagcaacaacctctcatcttccctgctttcgattcacctctgtcaaatttaatggattatggagagaaccgggactacaacatagagctaccaacgtctagttacatcgtggagaaagaacaaaagaaggatatgaatctttataagctcaaagaagattccattaatttcgatttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24554" stop="22268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24254" g_stop="24158" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24157" i_stop="23698" i_length="460">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23697" g_stop="23621" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="174" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23620" i_stop="23533" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23532" g_stop="23469" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="238" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23468" i_stop="23294" i_length="175">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23293" g_stop="23218" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="314" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23217" i_stop="23094" i_length="124">
            <donor d_prob="0.543" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23093" g_stop="23024" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="384" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23023" i_stop="22860" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22859" g_stop="22823" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="421" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22822" i_stop="22749" i_length="74">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22748" g_stop="22568" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="603" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E303876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24254" e_stop="24158"/>
          <exon e_start="23697" e_stop="23621"/>
          <exon e_start="23532" e_stop="23469"/>
          <exon e_start="23293" e_stop="23218"/>
          <exon e_start="23093" e_stop="23024"/>
          <exon e_start="22859" e_stop="22823"/>
          <exon e_start="22748" e_stop="22568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTTGTAAGTTGGTTTGTAGTGATTTTTGATATATGCAGTAAAGTTGGACCATCAGCTTCATTAAGATTGTTTGGATAAAATAGTAGTGTCTGCAGTCCTTTTTAGCTCTTGATTGTTATAACCTTATCAATTGAATTGAGTATTTTCTATGTTATATTGTTATAACCTTAATGAGTCAACCATTAGATTGATCCAATTCTGTTTCTGGATATCCTGTTATATTCATTGAAGTGATCCTGTTTTAGATCGATGTCCTTTTTGAGATAAAAATTGTTAGTTGGGTGACCATATGAGAATATGTGGAAAGTACCAAAATCATGTCAAGGCTGTCAATTCTGCAAATTGGAGTATCCTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGAAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAGGTAAAAGTTTATTACTGCGCCTTGTTTTTTTTCAATTTATTCGTTCTCTGGTAATTACTTTCGATGTCTTTTTACCTTGTGTTTTCAGAAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCGGTGAGTTTGCTATAATTTTGAGAATTTCCAACAAATAGCATAGTACTGTGCTACAGAAACCCTTGCCTATTTGATTGTAGAAATAGTCAACTTGTAGGTTCATAAAAGCTTCTCGTGTGTTGATTCGTTATGATGAAATCTTATCATGATTGCATTGTGTTCTGCGATTTCACAGGGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGGGTAGGTAACATGTTGTGTGCATTTGGTTTGCTAATGCCTCAATACACCTTATCATTAGGCTATATTTTACTCTGTTAATCAATTGACTTCTCGCTAATGAATGGCTTCATCTCTGTCTAAACAGAGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAGGTATGCATACACTTGTTTGCTAGCACTATTCGTATTCCTAATGCGTGTAAACCATGAAAACTTACAAACGCTGGATGTGATGATCCTAATCCTGTTCTCCTAGCTATACATTTATTGGCTTTAGTTCGCCCATTCTAATAGCAAGATTAACTCTCGCTAATCAGGTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAGGTAAGTATTTGCAAGCAATATTAGATAAAGCTAAGAAGAGCCTCCCAGACAACATGAACTCTCCTAATGCACAGGAAGCAACAACCTCTCATC-TCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACT</genome_strand>
        <mrna_strand>CTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAG........................................................................................AAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCG...............................................................................................................................................................................GGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGG............................................................................................................................AGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAG....................................................................................................................................................................GTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAG..........................................................................GAAGCAACAACCTCTCATCTTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723073" ref_strand="+" ref_description="SGN-E723073 [FC19BB05]">
      <seq>gggcgattggcggcaaatcggccgaattgaatgatggtgtgtcgtctctcctgttggctcttacaatcgaaagcaaaaaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctggtcttgttggttatcctctcgaatcagtgcagtgtagaagatttttttcaaggcaaacatataacatgttctgttcaggtcttttgtgacaaagctgctgttagtctatttctttggcaaatgggtatggagtttgatagttcttgtaagaacaaataaaaatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32261" stop="38992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32564" g_stop="32859" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="325" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="438" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="523" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38692" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="833" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E723073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32564" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGGTGTGTCGTCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAA</genome_strand>
        <mrna_strand>AATGATGGTGTGTCGTCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275938" ref_strand="+" ref_description="SGN-E275938 [cLEN-12-B11]">
      <seq>gtctctcctgttggctcttacaatcgaaagcaaaaaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32278" stop="33814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32578" g_stop="32859" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="395" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33514" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="468" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E275938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32578" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAAT</genome_strand>
        <mrna_strand>GTCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268715" ref_strand="+" ref_description="SGN-E268715 [cLEM-16-J5]">
      <seq>gctctcctgtaggctcttacaatctaaagcaaaaaaacctaagtcccaaatagagagcaaagatgcagaatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggttcatcactgctatacagaggaaaaggaagttgaaaagcaagaagcccatgactccaatcacatctaaagtcaagaaaatcaaaatgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32280" stop="33657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32579" g_stop="32859" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33357" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="388" r_length="108" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E268715" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32579" e_stop="32859"/>
          <exon e_start="33250" e_stop="33357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTT</genome_strand>
        <mrna_strand>GCTCTCCTGTAGGCTCTTACAATCTAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGA-ATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTTCATCACTGCTATACAGAGGAAAAGGAAGTTGAAAAGCAAGAAGCCCATGACTCCAATCACATCTAAAGTCAAGAAAATCAAAATGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270079" ref_strand="+" ref_description="SGN-E270079 [cLEM-7-O5]">
      <seq>tctcctgttggctcttacaatctaaagcaaaaaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32281" stop="38825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32581" g_stop="32859" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="392" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="477" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38525" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="620" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E270079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32581" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTG</genome_strand>
        <mrna_strand>TCTCCTGTTGGCTCTTACAATCTAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268240" ref_strand="+" ref_description="SGN-E268240 [cLEM-3-E24]">
      <seq>tctcctgttggctcttacaatcgaaagcaaaaaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32281" stop="38805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32581" g_stop="32859" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="392" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="477" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38505" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="600" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E268240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32581" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCA</genome_strand>
        <mrna_strand>TCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276083" ref_strand="+" ref_description="SGN-E276083 [cLEN-12-D7]">
      <seq>ctgttggctcttacaatcgaaagcaagaaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggaggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32285" stop="33830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32585" g_stop="32859" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="388" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="473" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E276083" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32585" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG</genome_strand>
        <mrna_strand>CTGTTGGCTCTTACAATCGAAAGCAAGAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGAGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274269" ref_strand="+" ref_description="SGN-E274269 [cLEN-15-H1]">
      <seq>aaaacctaagtcccaaatagagagcatagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcacgaaaatcaaagtgaaattttattcgtcttacaaggacagatttcgcgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtccgctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttgtggtcttgttggttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32312" stop="38839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32612" g_stop="32859" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38539" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="603" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E274269" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32612" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTAT</genome_strand>
        <mrna_strand>AAAACCTAAGTCCCAAATAGAGAGCATAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCACGAAAATCAAAGTGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGCGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCCGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTGTGGTCTTGTTGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274262" ref_strand="+" ref_description="SGN-E274262 [cLEN-15-F1]">
      <seq>aaaacctaagtcccaaatagagagcaaagatgcagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaagatggccagattaagcgctggaaggaggggaagagacatcatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacagtccctttggcttatgcaaaagtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32312" stop="38749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32612" g_stop="32859" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38449" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E274262" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32612" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGA</genome_strand>
        <mrna_strand>AAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAAGATGGCCAGATTAAGCGCTGGAAGGAGGGGAAGAGACATCATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACAGTCCCTTTGGCTTATGCAAAAGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274336" ref_strand="+" ref_description="SGN-E274336 [cLEN-15-F13]">
      <seq>aaaacctaagtcccaaatagagagcaaagatgcagagatggttctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32312" stop="38749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32612" g_stop="32859" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38449" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E274336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32612" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGA</genome_strand>
        <mrna_strand>AAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTTCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542325" ref_strand="+" ref_description="SGN-E542325 [TUS-63-J5]">
      <seq>cagagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctggtcttgttggttatcctctcgaatcagtgcagtgtagaagatttttttcaaggcaaacatataacatgttctgttcaggtcttttgtgacaaagctgctgttagtctatttctttggcaaatgggtatggagtttgatagttcttggtagaacaaataaaaatacaagagatgatctaaggagaaaggtgcaaggacaaaaaaatttgtatcaggtatccaagtgaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32344" stop="39057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32644" g_stop="32859" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="329" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="414" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38757" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="789" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E542325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32644" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAAC</genome_strand>
        <mrna_strand>CAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGGTAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300321" ref_strand="+" ref_description="SGN-E300321 [cLEW-17-M20]">
      <seq>agagatggtgctctaagctccggtccctcgccgctctccgtgcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32345" stop="38825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32645" g_stop="32859" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="413" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38525" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="556" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E300321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32645" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTG</genome_strand>
        <mrna_strand>AGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTGCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300290" ref_strand="+" ref_description="SGN-E300290 [cLEW-17-M19]">
      <seq>agagatggtgctctaagctccggtccctcgccgctctccgttcaactccaaatgcccatcactaccctcttactcctcatcgtcttctccacactgctaccaatcccattattaacaaacccttcacacagtcaatactctctcccacctttaaacccctttgccatggtggccctgtttcgttccccactcactcgtctctcctccctctttctttcatgcaagtgcggtacatcactgcaaaacagaggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaagcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32345" stop="38794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32645" g_stop="32859" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="413" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38383" g_stop="38494" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="525" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E300290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32645" e_stop="32859"/>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCTGTAAGTTGCCTTCTTTATTCATTTTCATCTTATTGGAGTGTGTATTTATATTAAGTTCATAGGAGTAGTGGGTGCAATGGACCTCCAAACCCCAATTACTTGAAATCTTGGATTTGCCTATGCATATAATGCTTAAAATAGTATAATGTTCTAGTCTGATTGTTATTAATTACGGTCTAAGTGCTGGAAATGGAAGGAAAGACAAAGGGGTTAACCAAAATGTGACCTTGATTTCATATGATTGGTCTTGGGTAGTGTTGAAAATATTGTAGCTTCTCATGTATGTTTAGTGTATCTTTCTGTTATTTACTTGTTCAGTAATGATTTCTATTCTGTGTTTATTGGGATTTTCTTCTATTTACTTGTTTAGTGTTGATTGTTGATTTCTAGTTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTAC</genome_strand>
        <mrna_strand>AGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAAGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542323" ref_strand="+" ref_description="SGN-E542323 [TUS-63-J5](-)">
      <seq>ttcatgcaagtgcggtacatcactgcaaacagagggaaaaggaagttgaaaagcaggaagcccatgactccaatcacatcaaaagtcaagaaaatcaaaatgaaattttattcgtcttacaaggacagatttcgtgtgatgaaggatggccagattaggcgctggaaggaggggaagagacataatgcacatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctggtcttgttggttatcctctcgaatcagtgcagtgtagaagatttttttcaaggcaaacatataacatgttctgttcaggtcttttgtgacaaagctgctgttagtctatttctttggcaaatgggtatggagtttgatagttcttgtaagaacaaataaaaatacaagagatgatctaaggagaaaggtgcaaggacaaaaaaatttgtatcaggtatccaagtgaagaaacagtcaagttctttcttatgaattaacttatctttatcaagtcatatgatcttaatttgaaccaatcattttacttctttttagtgatttgtcaggaaatgagatgaataaactagtttgattatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32950" stop="39185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33250" g_stop="33362" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33442" g_stop="33526" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="198" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38383" g_stop="38884" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="700" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="710"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E542323" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33250" e_stop="33362"/>
          <exon e_start="33442" e_stop="33526"/>
          <exon e_start="38383" e_stop="38884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCAAGTGCGGTACATCACTGCAAAACAGA-GGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTCGTATGTATATGACTTAATTTGATTTGTCTTTAAGTTCGTGTTAGATATTGAAGATAATTAGTACTTGCTACTGGATTAGGTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAGGTTAGCTTTTCTCTTGTTCTTTTGGCAGCTTTGATTAATTAAGCGAAATACGGTATACATGGACACTCAATTGTTGTTAATATTACCTTAATGCTTGTGAGGTGGTATTTTAGGGTATAATTTCAATCACTTATGTGTTTGACTTGGTACTTGTCTTATTGTTGTTACCAGAAAACTGCTTGACTAAACTGCTTGACAGTTCGACTAATAAGGATCAATAACTGATCCCCCTTGTAACTGTTTACCAGAACTCTTCCAGGGTTTTAGGGGAGGGGTGTTGTGAAAAGAAGAATGTTTCTCTGTGAAAGCACTCATCTTTCTTCCCACCATGTAGTTAATGTTTAGCAAGGAGTTGGAATGTTCCTAGCTGTTATTGTTATTGTTACAGTCAAATTCTGTACTGTATGCTTTGCTTAACAACTCCCAAAATGCATTTCTGTTAAAGTCCAGCTATGTAGGAGTTTAAAGTTTGTAAGTTTATTGATTGTTCTAGTGGGAGGTAGTAGGTACCCTGTTGAATTGGTCGAGGTGTGCACAAGCTGGCCTAAAAACAATGGTTTATAAAAGAAATGCTTGTAAACTTCTTGAAATTGTAGGGTTAATTTTGCTCAATTCAGTGAAATGATTTAGATCCAGGACTTATTTAGGGTCCAAAGATGTGATGAACTTAAAGCTTACTGCAAATTTTGCAAGGTTTATGTCTTTAGTTGATAATTTGTGATTCCTATGTAGGAGAAAGAAATTAGGGAGTACAGAAGTTTGGTGAGATCTTCAGTTTGGGGCTTCCAAATGTTGGAGCCTAAACAGATTAGGAAATGTTGTAAGGAGAATTCTGGGAAGTGAATCTAGATATGAATCAAGAATGAGAAAGGTTGAGGTGGAACAAAAAGGCAACTCGAGGTGCTTGAGAAGGACAAAAAAGATGTTGTCAATTGTCATTGAGAAGCTACTACCTAATTGTGGTTGACTAACAAACCATTTGAAAGGAAGTGAAAACAACTAGGAACCAAATAATAAAATGTAGCCTAGAATAAGTAAAAATAAAATCTGAACTAAGAATCCAAGCCTTACAGAAGAGTGCTATAGGACCACAACTATAATGCTGCCACAGTGGTGAATAATGATTCTGCCGCACTTCTTGTCTTCCCATCTATTCTTCCATCAGCATTCAGCTCTTCTTAGGTTGGAAAAAAGAAGCTGGTGCTCAAGTCTTCACTTTCCATGCTGAGTAGGAATTAGGGCTTGTCCTTGTAATCTGTCCATCCTTTCTTCCTTTTACTTTAGTTGGCTAGCTGAAACAACTTTATATTAGTCTTTCCAAAGTTGCATCTGATACAGTTCCTATGGTAATCATAACTTTTAAGAACATTTTCTCCCCTTCCTCTGGTAAATGATAATATGATTTGATAATATGATTAAAAGTTATCATGCGTGCAAGGTCCTTCATGTCTTCACCTTTATTTGATTATTCCAGCCGAATATGACTTGATGTCCATAAAGCATCCCCAATTAAAATTGTATTTGCGTGCTTCATTGATGACATATTTTTCTTCTTAAAGATTAACTCCGACCGCATAATTGAACCTTAGACAAACTCATACTCATTATTGAGAAGCAGTTTTTTTTCCTGCCACAACTCGTATATTTTAGTAAAAAGGGGCCGGACCACAAGTATTTCCATTGTATTCTCCAGACCTGTATATTATTTGTCTGTTTGACTTGTAGAACTTTTATAAGAGTTTGAGAGCACTGGTAGTGTCTGAAAAGTTTAGTACAATCTTTTAAGAATAGGAAGTAGATCATCTTTATGGGGGATAAATATATTTAACTGGAGGATTATTCTGATATCCTGATCTAATCCTGATGTATCAGAATCAAATTCTTGAAATAGCTCATTTGATCTTCATCACAACTTCGTAGTGCTTGAAATTATTAAGATAACTATCTTTATTTTCACCATTAATTTCTTCCTCCATTATATGTGTTCATTAGGATGCTTGGTTTGTCCATCAAGTTTTGTATTGATTTCTTCAACTCCTGTTTTCCGACATGTTTGTGTAGGCCGTCTTTAGTTATGATTCCAAGTAATACATACGGGATTGTGGAAGTAGGAGTTTTACTTTGATTTATGTGAAAGCCCTCATTTCCTAAAGGCAAATAAGGGGAAATGCTTAAAAGGGTTGTTTTTAGCAAAGAATTCAACTGATTAGGAATAGAGGCTTAGTTGATTGAATAAAAAAAGTTCTGGGATACATCATCAGGACCAGAGGCAAAATATCACAGATTTTTTTCTTGATGAGTGAAATTTTATTGATTGCCCCATAAAGTGCTTCTGCATGTACATTAAAAGACTTTTCATCCCCTTAATAAAGAAGGGTTTCAAGAATCTGTCTGTTACCTTGTCAAAAAGAAAAGGGGTTCAAGAAAATTGATAAAATATCACAGATAATAAGTTGAGCAATTACAAAGCTATAATAGCTCCTTCTTTTCTTTTCTTTTTTAAATTTTAAAAGACAGCCTTTTTCCTGAAAAAAAAACTGTATTTCCAAATTCTCAAGCTTATTTAGACGAAAGATTGAGGAAGATAGGAAGTAGGAAACAGATAGTAAAAGTTACTTAAATAATCGAACCGAATTACTTACCAAAAATAAATTCAGCCCAATTAATAAACTGTCCTCTGATCTTAAAGGCACTGTCGTTGTAAAAAGTTATCTGATCTATCAACCCAAAGAAAAAAAAACCTCTGATAGATGCTGCAAAACATACGCCATGTGCTGCTATATACCAACTTAAAAAGTGCCTGGTAAATATGATTCTGTTGCAGTACTAGTTTTGATGCATCTGTCTGTGCATCATTTATCCTCTATATTCTTCACTAGAACACTTCTGTATCCCTTTATTTTTTAGGAGACTTGAACGAATAGGCATTTTAGAAATTATTAAAAATCTTCTTCATCGTGTTTTCTTCCTTTTTTTGGTTCTTTAAGATCTGTTTTCACTTCTTACTGTTTCATTTTCTTCTTTGTCGAGCCCTAAGCAAATCTTTAACATCACTATTCCTGTAGCCCTTTCAGCTACATTGCACCCATTCATCATTAGCTCCATGTGTTCAAATTGTGCACCAAAATACAAATTTTTAAGTTTTGGATATACTTGAATAGAACAGAACGGCGAAATAAAATACATATATCTGATTCAACTAATTTGAGTTTGAGGCCTGATTGATTTATTGGTTGTCATTTGTTTCTTACCTATCATCTGTCATCACTTTTTCCCTATAAGATATTGGATTGCATATAAATATGCAAAGACCAATTTCTTGTGAGGAAAGGGATTCTCTGTATACAAGCATTATACGAAAAAGTAGGGAATCTACTTCATAGTTAATTGATAGGTGAGTTTCACAAAGTATATCCGTCCCAAGCCCTGGATAAAGGATAAGAAATGTGGAGGTTGATTGTTGATGTTGACCACCAGTGTAAAGCTGTCTACCTATGATATATTCTCTGATATTAGCATTTGTAATAAACTGAATCTGAATAGAGAGGGCATGGATAAATAAGATTTAAAAAGCATAGAATAGTTAATTTTGGATTGAGAGACAGTTCATTGGTTGTTTTCTAATGGACTCATGTAGCTTGATATGGTGTACACATGTAGTTTTATATGGTAGAAGTCTGCTAGCCTTTATGTGTTATGAAGTTGTGCATTTTGCCTTCAGCGAGTAAGGGCAACATTTGAAACCATTTTTTGGGGTGGGTTGGAGAAAGGTAGGGGGGCAGAATCTTCCTGACGTGGAAAGTGGAAACTTGTGTATTTGGCAAAACATCTCTTTTTTTTGTCGTTGATAATCTTTATGTCCGGGCCAACTTGCATTCACCTAGATTAATTCCACGTGATACCTGATACCTATCACCAACATCGATATCAGGAAACCTTGTCCACCAATGCTTGGACCTACGGAAAAATTTCCCAGTGCTTTTGTGTTTTTGCCTCCACAAGAACCGGAGACCTCATGATTCTCAGTCCTCTTCATTGAGCACTAGACTGTTATGCTACTCTCTTGGGTACGGCAAAACACCATTTTTTTAAAAAAAAGTGCAGTAACGTAATTCCTGCCTGCCCTCCAGGCTAGTTATTTATTTGATAAAATTGCTTGGACCATAGTAAAATAGTTAGTAACAATATTGTGCATCACAGCTAAATGCAACTCTGTGTGCAGTAATAACAACATTTGATACTAGAAACTTAATCTTGCGATTTCTTAGGCTGAACTAGTCTAACTGCGATTTTCTTATGTTTAACTATGTGGTAATTCTGCTTGTTCAGAGGAATAGGAAGTTCAAAATTTCCTTAGCAAGGTGAAGTCTGTTGTGAGATCGCAACTTCTAAATCACTTTCTTTTATGCCTTCATTGAGTGGATTTGGAAGCTATAGCTTTTGAGATCACTTGATTTTTGAAGGCAAATCTTTGATTTTCCGGGACTTTTGGCCTTCTAAAATTAGTTCCAGCCTAACAACTTTTTGAAGGTGGCCAGCATAGCCCTTAATGCTGAGGAATACAAAATGTTTCCAGTCTTAAGTTAAAAAAAGAGTTCCAGGACTCATGGACTTGATAAGTTTGATCATCTGGTAGATTCTTGGTTGTAGAAATATAGAAAGGTCAAAATTTTCTGGAGTAAACTGCCATGTTTTCTGTTCATATAAATAAAATGACACACTTACCATTAAAATAGATTCTTGAGCATCTTCAGTTGAATTATCTGCATGTTGTTGTGTTTGTACACTTGCACTAGTTATGAACTTGAGTCATGACTTCTTCAATGGTGCTAAATGAGTTTTATTGTTTGGTGCAGTCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAACAGTCAAGTTCTTTCTTATGAATTAACTTATCTTTATCAAGTCATATGATCTTAATTTGAACCAATCATTTTACTTCTTTTTAGTGATTTGTCAGGAAATGAGATGAATAAACTAGTTTGATTATGTG</genome_strand>
        <mrna_strand>TTCATGCAAGTGCGGTACATCACTGC-AAACAGAGGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC...............................................................................GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAACAGTCAAGTTCTTTCTTATGAATTAACTTATCTTTATCAAGTCATATGATCTTAATTTGAACCAATCATTTTACTTCTTTTTAGTGATTTGTCAGGAAATGAGATGAATAAACTAGTTTGATTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335338" ref_strand="+" ref_description="SGN-E335338 [cTOE-2-C1]">
      <seq>acatttaaagtctaagaaatcaaaacgtcggctcaggcaacctgctacggtccctttggcttatgcaaaagtgatgaagaagctcagtttctgttgaagcatttttagtttgatgctcttactgccactctcacttgagtggcgtttcttctggtcttgttggttatcctctcgaatcagtgcagtgtagaagatttttttcaaggcaaacatataacatgttctgttcaggtcttttgtgacaaagctgctgttagtctatttctttggcaaatgggtatggagtttgatagttcttgtaagaacaaataaaaatacaagagatgatctaaggagaaaggtgcaaggacaaaaaaatttgtatcaggtatccaagtgaagaaacagtcaagttctttcttatgaattaacttatctttatcaagtcatatgatcttaatttgaaccaatcattttacttctttttagtgatttgtcaggaaatgagatgaataaactagtttgattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38081" stop="39180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38383" g_stop="38879" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="507" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="518"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E335338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38383" e_stop="38879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAACAGTCAAGTTCTTTCTTATGAATTAACTTATCTTTATCAAGTCATATGATCTTAATTTGAACCAATCATTTTACTTCTTTTTAGTGATTTGTCAGGAAATGAGATGAATAAACTAGTTTGATT</genome_strand>
        <mrna_strand>TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAACAGTCAAGTTCTTTCTTATGAATTAACTTATCTTTATCAAGTCATATGATCTTAATTTGAACCAATCATTTTACTTCTTTTTAGTGATTTGTCAGGAAATGAGATGAATAAACTAGTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354953" ref_strand="+" ref_description="SGN-E354953 [cTOS-19-I22]">
      <seq>aacggtgaatcaggttcttggatgtgactacagacgacttgtacaattatgagggattgcgacaaagaagaaaaaatgcaaaaataaagaaggaaaaaaaatatggaaattaaagaaataaagaaggaaagaaataaagaagttaaattcaagtcaaataaggaaagaaaaaaaaggttacaattcaagtcaaataaggaaagaaataaatatagacaatttcaagaaggaaaatgatttgtaattcctttagttccttgtagaagttgatgaaggccaatcaaactctataaaaggtttaagaagttgaagaaaaaaatgtctttgcaataacataaatcgagagaatttttccagtaaaacaagaacgatagctattgcaattcacgaaatatatcttcgtgaaagcaatagttactggagaaaagttgcagagcttcgtcacagcttggtcacaacaacgtaaggaccaagatcacgagttatgttccactctgaactattgaatattgaagtctgatcaattaaattatagggttattagtctctgttgatttgttctagatttattattgagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62425" stop="63604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62726" g_stop="63304" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="583" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E354953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62726" e_stop="63304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCAGGTTCTTGGATGTGACTACAGACGACTTGTACAATTATGAGGGATTGCGACAAAGAAGAAAAAATGCAAAAATAAAGAAGGAAAAAAAATATGGAAATTAAAGAAATAAAGAAGGAAAGAAATAAAGAAGTTAAATTCAAGTCAAATAAGGAAAGAAAAAAAAGGTTACAATTCAAGTCAAATAAGGAAAGAAATAAATATAGACAATTTCAAGAAGGAAAATGATTTGTAATTCCTTTAGTTCCTTGTAGAAGTTGATGAAGGCCAATCAAACTCTATAAAAGGTTTAAGAAGTTGAAGAAAAAAATGTCTTTGCAATAACATAAATCGAGAGAATTTTTCCAGTAAAACAAGAACGATAGCTATTGCAATTCACGAAATATATCTTCGTGAAAGCAATAGTTACTGGAGAAAAGTTGCAGAGCTTCGTCACAGCTTGGTCACAACAACGTAAGGACCAAGATCACGAGTTATGTTCCACTCTGAACTATTGAATATTGAAGTCTGATCAATTAAATTATAGGGTTATTAGTCTCTGTTGATTTGTTCTAGATTTATTATTGAGTTGAAA</genome_strand>
        <mrna_strand>GTGAATCAGGTTCTTGGATGTGACTACAGACGACTTGTACAATTATGAGGGATTGCGACAAAGAAGAAAAAATGCAAAAATAAAGAAGGAAAAAAAATATGGAAATTAAAGAAATAAAGAAGGAAAGAAATAAAGAAGTTAAATTCAAGTCAAATAAGGAAAGAAAAAAAAGGTTACAATTCAAGTCAAATAAGGAAAGAAATAAATATAGACAATTTCAAGAAGGAAAATGATTTGTAATTCCTTTAGTTCCTTGTAGAAGTTGATGAAGGCCAATCAAACTCTATAAAAGGTTTAAGAAGTTGAAGAAAAAAATGTCTTTGCAATAACATAAATCGAGAGAATTTTTCCAGTAAAACAAGAACGATAGCTATTGCAATTCACGAAATATATCTTCGTGAAAGCAATAGTTACTGGAGAAAAGTTGCAGAGCTTCGTCACAGCTTGGTCACAACAACGTAAGGACCAAGATCACGAGTTATGTTCCACTCTGAACTATTGAATATTGAAGTCTGATCAATTAAATTATAGGGTTATTAGTCTCTGTTGATTTGTTCTAGATTTATTATTGAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241951" ref_strand="+" ref_description="SGN-E241951 [cLED-27-C19]">
      <seq>caaagaagaaaaaatgcaaaaataaagaaggaaaaaaaatatggaaattaaagaaataaagaaggaaagaaataaagaagttaaattcaagtcaaataaggaaagaaaaaaaaggttacaattcaagtcaaataaggaaagaaataaatatagacaatttcaagaaggaaaatgatttgtaattcctttagttccttgtagaagttgatgaaggccaatcaaactctataaaaggtttaagaagttgaagaaaaaaatgtctttgcaataacataaatcgagagaatttttccagtaaaacaagaacgatagctattgcaattcacgaaatatatcttcgtgaaagcaatagttactggagaaaagttgcagagcttcgtcacagcttggtcacaacaacgtaaggaccaagatcacgagttatgttccactctgaactattgaatattgaagtctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62484" stop="63544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62784" g_stop="63244" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E241951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62784" e_stop="63244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAAAAAATGCAAAAATAAAGAAGGAAAAAAAATATGGAAATTAAAGAAATAAAGAAGGAAAGAAATAAAGAAGTTAAATTCAAGTCAAATAAGGAAAGAAAAAAAAGGTTACAATTCAAGTCAAATAAGGAAAGAAATAAATATAGACAATTTCAAGAAGGAAAATGATTTGTAATTCCTTTAGTTCCTTGTAGAAGTTGATGAAGGCCAATCAAACTCTATAAAAGGTTTAAGAAGTTGAAGAAAAAAATGTCTTTGCAATAACATAAATCGAGAGAATTTTTCCAGTAAAACAAGAACGATAGCTATTGCAATTCACGAAATATATCTTCGTGAAAGCAATAGTTACTGGAGAAAAGTTGCAGAGCTTCGTCACAGCTTGGTCACAACAACGTAAGGACCAAGATCACGAGTTATGTTCCACTCTGAACTATTGAATATTGAAGTCTGATCA</genome_strand>
        <mrna_strand>CAAAGAAGAAAAAATGCAAAAATAAAGAAGGAAAAAAAATATGGAAATTAAAGAAATAAAGAAGGAAAGAAATAAAGAAGTTAAATTCAAGTCAAATAAGGAAAGAAAAAAAAGGTTACAATTCAAGTCAAATAAGGAAAGAAATAAATATAGACAATTTCAAGAAGGAAAATGATTTGTAATTCCTTTAGTTCCTTGTAGAAGTTGATGAAGGCCAATCAAACTCTATAAAAGGTTTAAGAAGTTGAAGAAAAAAATGTCTTTGCAATAACATAAATCGAGAGAATTTTTCCAGTAAAACAAGAACGATAGCTATTGCAATTCACGAAATATATCTTCGTGAAAGCAATAGTTACTGGAGAAAAGTTGCAGAGCTTCGTCACAGCTTGGTCACAACAACGTAAGGACCAAGATCACGAGTTATGTTCCACTCTGAACTATTGAATATTGAAGTCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362432" ref_strand="+" ref_description="SGN-E362432 [cLPP-1-I11]">
      <seq>tttccttcattcttgctgctcatcaaattaaatcaatggagatgaatttagtttcaggtctcctcttattctcattcctttttattctttttcgaaaatggagaagaagccaacaacacaatttgcctccaggtccatggagactcccactcattgggagtttgcatcacttaattagtggacataatccacatcgtatttttagagatctagctcgaaaatacggccctgtaatgtacttggaactcggggaagttcctaccgtgatcatatcatcaccttctacgtccaaacaagttttaaaaactcatgatctcgcctttgctagtaggccacaatttacatccactgatattgtcatgtacaataataaagatattgcatttgcagaatatggtgactactggaaacaaatgcgcaaaatttgtataatggaacttctaagtgccaagatggtcaagtcatttagctcaattcgaaaggatgaactctcgagtgttctctcatcaattgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73532" stop="72415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73232" g_stop="72715" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E362432" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73232" e_stop="72715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCATTCTTGTAGCTCATCAAATTAAATCAATGGATATGAATTTAGTTTCATTTATCCTCTTGTTCTCATTCCTTTTTATTATTTTTCGAAAATTGAGAAGAAGCCAAAAACAAAACTTGCCTCCAGGTCCATGGAGACTCCCACTCATTGGGAGTTTGCATCATTTAATTAGTGGACATAATCCACATCGTATTTTTAGAGACCTAGCTCGAAAATACGGCCCCGTAATGTACTTAGAACTCGGAGAAGTTCCTACCGTCATCATATCATCTCCTTCTACGTCCAAACAAGTTTTAAAAACTCATGATCTCGCCTTTGCTAGTAGGCCACAATTTACATCCACTGATATTGTCATGTACAATAATAAAGATATTGCGTTTGCAGAATATGGTGACTACTGGAAACAAATGCGTAAGATTTGCATAATGGAACTTTTAAGTGCCAAGATGGTCAAGTCATTTAGCTCAATTCGTAAGGATGAGCTCTCTAGTGTTCTCTCGTCAATTGATTCT</genome_strand>
        <mrna_strand>TTTCCTTCATTCTTGCTGCTCATCAAATTAAATCAATGGAGATGAATTTAGTTTCAGGTCTCCTCTTATTCTCATTCCTTTTTATTCTTTTTCGAAAATGGAGAAGAAGCCAACAACACAATTTGCCTCCAGGTCCATGGAGACTCCCACTCATTGGGAGTTTGCATCACTTAATTAGTGGACATAATCCACATCGTATTTTTAGAGATCTAGCTCGAAAATACGGCCCTGTAATGTACTTGGAACTCGGGGAAGTTCCTACCGTGATCATATCATCACCTTCTACGTCCAAACAAGTTTTAAAAACTCATGATCTCGCCTTTGCTAGTAGGCCACAATTTACATCCACTGATATTGTCATGTACAATAATAAAGATATTGCATTTGCAGAATATGGTGACTACTGGAAACAAATGCGCAAAATTTGTATAATGGAACTTCTAAGTGCCAAGATGGTCAAGTCATTTAGCTCAATTCGAAAGGATGAACTCTCGAGTGTTCTCTCATCAATTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353985" ref_strand="+" ref_description="SGN-E353985 [cLHT-6-I17](-)">
      <seq>gtcactgagtttgtatatcgaagaattagttctgttaagttgacaagacgagtaccattagtggatcggattgatgagaggagtctcataatctcatctttccgaattgaactaaatgacttgaccgttttggtacttaataactccgtgacacaaatattacgcatttgtctccatttatcaccgtatggtgcaaatgcaatgtccttataattataagtagtgatgtctatggatgtaagttgtggcttagtggcaaaggcgagttcatgagtttttagtatttctttcaccatattaggggatgatacgatcacagcaggaatttctccgagttgtaagtacataatcggaccatattttgttgctaaattctgtagggtacgatgtggaaataatagagcacctctcaagtgatgaagactaccaataatgggaagtctccatggacctggaggcaatttttcttttgccgttgatgattttctaagtaatttgacaaatagagtaaacaaaaagggaaagaatataagtagtagtgcaacaaagctgtaagtagaggaataaatgacctccatattttttactaaaataagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91116" stop="92306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91416" g_stop="92006" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E353985" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91416" e_stop="92006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTGAGTTTGTATATCGAAGAATTAGTTCTGTTAAGTTGACAAGACGAGTACCATTAGTGGATCGGATTGATGAGAGGAGTCTCGTAATCTCATCTTTCCGAATTGAACTAAATGACTTGACCGTTTTGGTACCTAATAACTCCGTGACACAAATATTACGCATTTGTCTCCATTTATCACCGTATGGTGCAAATGCAATGTCCTTGTAATTATAAGTAGTGATGTCTATGGATGTAAGTTGTGGCTTAGTGGCAAAGGCGAGTTCATGAGTTTTTAGTATTTCTTTCACCATAATAGGGGATGATACGATCACAGCAGGAATTTCTCCGAGTTGTAAATACATAATCGGACCATATTTTGTTGCTAAATTTTTTAGGGTACGATGTGGAAATGATAGTGCACCTCTCAAGTGATGAAGACTACCAATAATGGGAAGTCTCCATGGACCTGGAGGCAATTTTTCTTTTGCCGTTGATGATTTTCTAAGTAA--T------T-GAGTAAACAAAAAGGGAAAGAATATAAGTAGTAGTGCAACAAGGTTGTAAGAAGAGGAATAAATGACCTCCATATTTTTTACTAAAATAAGAAAG</genome_strand>
        <mrna_strand>GTCACTGAGTTTGTATATCGAAGAATTAGTTCTGTTAAGTTGACAAGACGAGTACCATTAGTGGATCGGATTGATGAGAGGAGTCTCATAATCTCATCTTTCCGAATTGAACTAAATGACTTGACCGTTTTGGTACTTAATAACTCCGTGACACAAATATTACGCATTTGTCTCCATTTATCACCGTATGGTGCAAATGCAATGTCCTTATAATTATAAGTAGTGATGTCTATGGATGTAAGTTGTGGCTTAGTGGCAAAGGCGAGTTCATGAGTTTTTAGTATTTCTTTCACCATATTAGGGGATGATACGATCACAGCAGGAATTTCTCCGAGTTGTAAGTACATAATCGGACCATATTTTGTTGCTAAATTCTGTAGGGTACGATGTGGAAATAATAGAGCACCTCTCAAGTGATGAAGACTACCAATAATGGGAAGTCTCCATGGACCTGGAGGCAATTTTTCTTTTGCCGTTGATGATTTTCTAAGTAATTTGACAAATAGAGTAAACAAAAAGGGAAAGAATATAAGTAGTAGTGCAACAAAGCTGTAAGTAGAGGAATAAATGACCTCCATATTTTTTACTAAAATAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353961" ref_strand="+" ref_description="SGN-E353961 [cLHT-6-I5](-)">
      <seq>caaatgcaatgtccttataattataagtagtgatgtctatggatgtaagttgtggcttagtgccaaaggcgagttcatgagtttttagtatttctttcaccatattaggggatgatacgatcacagcaggaatttctccgagttgtaagtacataatcggaccatattttgttgctaaattctgtagggtacgatgtggaaataatagagcacctctcaagtgatgaagactaccaataatgggaagtctccatggacctggaggcaatttttcttttgccgttgatgattttctaagtaatttgacaaatagagtaaacacaaagggaaagaatataagtagtagtgcaacaaagctgtaagtagaggaataaatgacctccatattttttactaaaataagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91309" stop="92306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91609" g_stop="92006" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E353961" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91609" e_stop="92006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCAATGTCCTTGTAATTATAAGTAGTGATGTCTATGGATGTAAGTTGTGGCTTAGTGGCAAAGGCGAGTTCATGAGTTTTTAGTATTTCTTTCACCATAATAGGGGATGATACGATCACAGCAGGAATTTCTCCGAGTTGTAAATACATAATCGGACCATATTTTGTTGCTAAATTTTTTAGGGTACGATGTGGAAATGATAGTGCACCTCTCAAGTGATGAAGACTACCAATAATGGGAAGTCTCCATGGACCTGGAGGCAATTTTTCTTTTGCCGTTGATGATTTTCTAAGTAA--T------T-GAGTAAACAAAAAGGGAAAGAATATAAGTAGTAGTGCAACAAGGTTGTAAGAAGAGGAATAAATGACCTCCATATTTTTTACTAAAATAAGAAAG</genome_strand>
        <mrna_strand>CAAATGCAATGTCCTTATAATTATAAGTAGTGATGTCTATGGATGTAAGTTGTGGCTTAGTGCCAAAGGCGAGTTCATGAGTTTTTAGTATTTCTTTCACCATATTAGGGGATGATACGATCACAGCAGGAATTTCTCCGAGTTGTAAGTACATAATCGGACCATATTTTGTTGCTAAATTCTGTAGGGTACGATGTGGAAATAATAGAGCACCTCTCAAGTGATGAAGACTACCAATAATGGGAAGTCTCCATGGACCTGGAGGCAATTTTTCTTTTGCCGTTGATGATTTTCTAAGTAATTTGACAAATAGAGTAAACACAAAGGGAAAGAATATAAGTAGTAGTGCAACAAAGCTGTAAGTAGAGGAATAAATGACCTCCATATTTTTTACTAAAATAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542838" ref_strand="+" ref_description="SGN-E542838 [TUS-64-F13]">
      <seq>caaaaatatggaactcccaatccttgttattatcttcatctcatttatcttgttcattatcaagccatatatcaattctaaacccaataaactaccaccaggtcctactggtctcccaataatcggctcactcttaaaactaggtacaaaacctaaccaatcactagccgagctagccaaaaaacatggccctctcatgactctacagctcggctcactcacaaccatagtagtctcctcagccaaagtagccaaagagattctccacaaacacgacgaaactttctcagcacgtattgtccctgtagccgtagctgctcagccgaaccatgaagacacgttagcatgggttaacggcgatcacatgtggaaaaaaaagagaaggtttctaagtacgcaaatgtttaataatcaacggcttgatttgcttcaagaactacgtcaccaaaaagcggaacaactagtgagccatataaggagccagtgtgagagtggctccgctgttgatattggacgggtcgcgttcgcgaccacgttgaatttaatatcgaacacgatattttcgatcgatatggtggaaacggaatttaaaacggctcatgagtttaaggaattggtttggacagttattgaagatgccggggtaccaaatctatctgatttttttccggttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103486" stop="104762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103786" g_stop="104462" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E542838" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103786" e_stop="104462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATATGGAACTCCCAATCCTTGTTATTATCTTCATCTCATTTATCTTGTTCATTATCAAGCCATATATCAATTCTAAACCCAATAAACTACCACCAGGTCCTACTGGTCTCCCAATAATCGGCTCACTCTTAAAACTAGGTACAAAACCTAACCAATCACTAGCCGAGCTAGCCAAAAAACATGGCCCTCTCATGACTCTACAGCTCGGCTCACTCACAACCATAGTAGTCTCCTCAGCCAAAGTAGCCAAAGAGATTCTCCACAAACACGACGAAACTTTCTCAGCACGTATTGTCCCTGTAGCCGTAGCTGCTCAGCCGAACCCTGAAGCCACGTTAGCATGGGTTAACGGCGATCACATGTGGAAAAAAAAGAGAAGGTTTCTAAGTACGCAAATGTTTAATAATCAACGGCTTGATTTGCTTCAAGAACTACGTCACCAAAAAGCGGAACAACTAGTGAGCCATATAAGGAGCCAGTGTGAGAGTGGCTCCGCTGTTGATATTGGACGGGTCGCGTTCGCGACCACGTTGAATTTAATATCGAACACGATATTTTCGATCGATATGGTGGATACGGAATTTAAAACGGCTCATGAGTTTAAGGAATTGGTTTGGACAGTTATGGAAGATGCCGGGGTACCAAATCTATCTGATTTTTTTCCGGTTTTAA</genome_strand>
        <mrna_strand>CAAAAATATGGAACTCCCAATCCTTGTTATTATCTTCATCTCATTTATCTTGTTCATTATCAAGCCATATATCAATTCTAAACCCAATAAACTACCACCAGGTCCTACTGGTCTCCCAATAATCGGCTCACTCTTAAAACTAGGTACAAAACCTAACCAATCACTAGCCGAGCTAGCCAAAAAACATGGCCCTCTCATGACTCTACAGCTCGGCTCACTCACAACCATAGTAGTCTCCTCAGCCAAAGTAGCCAAAGAGATTCTCCACAAACACGACGAAACTTTCTCAGCACGTATTGTCCCTGTAGCCGTAGCTGCTCAGCCGAACCATGAAGACACGTTAGCATGGGTTAACGGCGATCACATGTGGAAAAAAAAGAGAAGGTTTCTAAGTACGCAAATGTTTAATAATCAACGGCTTGATTTGCTTCAAGAACTACGTCACCAAAAAGCGGAACAACTAGTGAGCCATATAAGGAGCCAGTGTGAGAGTGGCTCCGCTGTTGATATTGGACGGGTCGCGTTCGCGACCACGTTGAATTTAATATCGAACACGATATTTTCGATCGATATGGTGGAAACGGAATTTAAAACGGCTCATGAGTTTAAGGAATTGGTTTGGACAGTTATTGAAGATGCCGGGGTACCAAATCTATCTGATTTTTTTCCGGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301831" ref_strand="+" ref_description="SGN-E301831 [cLEW-25-J12]">
      <seq>aaaaatatggaactcccaatccttgttattatcttcatctcatggatcttgttcattatcaagccatatatcaattctaaacccaataaactaccaccaggtcctactggtctcccaataataggctcactcttaaaactaggtacaaaacctaaccaatcactagccgagctagccaaaaaacatggccctctcatgactctacagctcggctcactcacaaccatagtagtctcctcagccaaagtagccaaagagattctccacaaacacgacgaaactttctcagcacgtattgtccctgtagccgtagctgctaagccgaaccctgaagccacgttagcatgggttaacggcgatcacatgtggaaaaaaaagagaaggtttctaagtacgcaaatgtttaataatcaacggcttgatttgcttcaagaactacgtcaccaaaaagcggaacaactagtgagccatataaggagccagtgtgagagtggctccgctgttgatattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103487" stop="104599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103787" g_stop="104299" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E301831" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103787" e_stop="104299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATGGAACTCCCAATCCTTGTTATTATCTTCATCTCATTTATCTTGTTCATTATCAAGCCATATATCAATTCTAAACCCAATAAACTACCACCAGGTCCTACTGGTCTCCCAATAATCGGCTCACTCTTAAAACTAGGTACAAAACCTAACCAATCACTAGCCGAGCTAGCCAAAAAACATGGCCCTCTCATGACTCTACAGCTCGGCTCACTCACAACCATAGTAGTCTCCTCAGCCAAAGTAGCCAAAGAGATTCTCCACAAACACGACGAAACTTTCTCAGCACGTATTGTCCCTGTAGCCGTAGCTGCTCAGCCGAACCCTGAAGCCACGTTAGCATGGGTTAACGGCGATCACATGTGGAAAAAAAAGAGAAGGTTTCTAAGTACGCAAATGTTTAATAATCAACGGCTTGATTTGCTTCAAGAACTACGTCACCAAAAAGCGGAACAACTAGTGAGCCATATAAGGAGCCAGTGTGAGAGTGGCTCCGCTGTTGATATTGGA</genome_strand>
        <mrna_strand>AAAAATATGGAACTCCCAATCCTTGTTATTATCTTCATCTCATGGATCTTGTTCATTATCAAGCCATATATCAATTCTAAACCCAATAAACTACCACCAGGTCCTACTGGTCTCCCAATAATAGGCTCACTCTTAAAACTAGGTACAAAACCTAACCAATCACTAGCCGAGCTAGCCAAAAAACATGGCCCTCTCATGACTCTACAGCTCGGCTCACTCACAACCATAGTAGTCTCCTCAGCCAAAGTAGCCAAAGAGATTCTCCACAAACACGACGAAACTTTCTCAGCACGTATTGTCCCTGTAGCCGTAGCTGCTAAGCCGAACCCTGAAGCCACGTTAGCATGGGTTAACGGCGATCACATGTGGAAAAAAAAGAGAAGGTTTCTAAGTACGCAAATGTTTAATAATCAACGGCTTGATTTGCTTCAAGAACTACGTCACCAAAAAGCGGAACAACTAGTGAGCCATATAAGGAGCCAGTGTGAGAGTGGCTCCGCTGTTGATATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542837" ref_strand="+" ref_description="SGN-E542837 [TUS-64-F13](-)">
      <seq>aaaccctgaagaactcaacaaagttcgacaagaaataatggaccaaataggtctagaaagagcagttaaagaatcagacttggccaaactcccatatcttcaagcagttgtaaaagaaacgattagacttcaccccgcagttccattactattaccgcacaaagcacaaaatgacatacaagtgttgggcttcaacgtgcctatatacagtcaagttttcgtgaatgcatgggcaatcggaagagatcccaagtcgtgggaaagggcactagagtttttgcctcaaagattcatcgaatctaacgtggattataaaggtagggattttgagtttattccatttggcgcggggaggaggatttgtcctggaataccgctggctataagaatggtgaatttaatgttggcttctgttattcaaccatttaaatggaagttacctgatggaatggctccggaggaattgaacatggaggaacaatttggagtaagtttgaggaaggctgttcctcttgttgcagttcctagtatggaagaaaaataatcttcttttaatttattcctgatttaattttaatttgcaatgattcttctttaccttgttaatgtgattgtgcgaagtgtatttatgttaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105421" stop="107970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105720" g_stop="106349" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106350" i_stop="107651" i_length="1302">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107652" g_stop="107678" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="657" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E542837" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105720" e_stop="106349"/>
          <exon e_start="107652" e_stop="107678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTGAAGAACTCAACAAAGTACGACAAGAAATAATGGAACAAATAGGTCTAGAAAGAGCAGTTAAAGAATCAGACATGGACAAACTCCCATATCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCACCCCGCAGTTCCATTACTATTACCGCACAAAGCACAAAATGACATACAAGTGTTGGGCTTCAACGTGCCTAAATACAGTCAAGTTTTCGTGAATGCATGGGCAATCGGAAGAGATCCCAAGTCGTGGGAAAGGGCACTAGAGTTTTTGCCTCAAAGATTCATCGAATCTAACGTGGATTATAAAGGTAGGGATTTTGAGTTTATTCCATTTGGCGCGGGGAGGAGGATTTGTCCTGGAATACCGCTGGCTATAAGAATGGTGAATTTAATGTTGGCTTCTGTTATTCAACCATTTAAATGGAAGTTACCTGATGGAATGGCTCCGGAGGAATTGAACATGGAGGAACAATTTGGAGTAAGTTTGAGGAAGGCTGTTCCTCTTGTTGCAGTTCCTAGTATGGAAGAAAAATAATCTTCTTTTAATTTATTCCTGATTTAATTTTAATTTGCAATTGTTCTTCTTTACCTTGTTAATGTGATTGTGCGAAGTGTATTTATGTAATGTTTGGCTTAATAATTTGTTTTTAAAAACTTTTGGAAACAAGAAACTTGAAATTAATGAGCAACTTTTGGACGTTGCCCTTGTCTACTTAATTGTTCTATCCAAAGAGAAAATTGATTTTTGCATCGGTAAACTTTGATTTTATGTTTAATTTTGAAGCCGCATTAAATAGTGGCGGACTCAGGATTTTCAATAAATGGGTTCAAAGTTCGTAGAAATAGACATACGGAGTAGCTGAAGAAGATTCCACATATACTATATATACATAAAATATTATTTTATAAATAATATAATTTTTCATCGAAAAAGGGTTCGGATGAAACCCCTTGTACCAAGGTGGCTCCGCCCCTGACAATAAATATGCATATTAACAAAAAGTGATATACTAACATTAATTAGTTAATTGTTATTGAATCCTCGCTAAAGTCAAAAGTGATATACTAGTATTAATTAATTAATTGCTTTCGGATCCTCGCTAAAGACTTTAGAAATATTTAAAGAAGTGTGTTTCTAAAGACTTCAGGAATATTAAAAAAAGTGTTATTGCCATTAAAAGAATTTACATATTAAATTACACTTAAATTATTATCGTTAATTAATTATCAATTATTTTATTATAGTGTGAACACACATGGTTTAATATTCGTATTATTATAAAGTTTTTAGAAAACAGAAATATACATAATAAAATAAGTAAGTAGAAAAGAGTTTACAAGACGACTAAGATGAGAATACCCCACTGGCCACTGTGAATACTATTCAAGGGACACTGAATGAGAATACAGGGACAGGGACTGGGACAGTGGCGAGAAATTTCATTTATTCATCATTTTAATAATTTAATTTATTTTAAAAATTCATAAAACAACATAATAAGGAAAAAAAGTCAAATTTTTTTAAAAATAATCACTAAAATGGGGCAAAAATAAAAAAAAACCGCTAAATATGACATGACAAAGTATGTTCAATTTAGCGCATGGGGAGGGGGGAAGGGGTGTTGCTCCATTTTTCCATTTACTTTTTATATGTTCAACCTCCTCCATAAAAATTCTAGCCCCTCACTGAATATAGGACACAATTTTTTTCAAATGTCAAACATAGTAATACTCGTTTTCAAAATTTTCTGGCTTGAAAACGATTTATACCTAATTACCTATAATTTTTAAATTTCAATTTTCTATATGAGATATTTAAGATCATAAGATTAAAAAATATTTTAATATTTTGCATATCCTTATTTAATTAAGACAATAAATTCATAAACCTTCTTTATTTACTTAAATTTCATTTCAAGTCAAATTAAAAAAAAAAAAGAAAAAAATAAA</genome_strand>
        <mrna_strand>AAACCCTGAAGAACTCAACAAAGTTCGACAAGAAATAATGGACCAAATAGGTCTAGAAAGAGCAGTTAAAGAATCAGACTTGGCCAAACTCCCATATCTTCAAGCAGTTGTAAAAGAAACGATTAGACTTCACCCCGCAGTTCCATTACTATTACCGCACAAAGCACAAAATGACATACAAGTGTTGGGCTTCAACGTGCCTATATACAGTCAAGTTTTCGTGAATGCATGGGCAATCGGAAGAGATCCCAAGTCGTGGGAAAGGGCACTAGAGTTTTTGCCTCAAAGATTCATCGAATCTAACGTGGATTATAAAGGTAGGGATTTTGAGTTTATTCCATTTGGCGCGGGGAGGAGGATTTGTCCTGGAATACCGCTGGCTATAAGAATGGTGAATTTAATGTTGGCTTCTGTTATTCAACCATTTAAATGGAAGTTACCTGATGGAATGGCTCCGGAGGAATTGAACATGGAGGAACAATTTGGAGTAAGTTTGAGGAAGGCTGTTCCTCTTGTTGCAGTTCCTAGTATGGAAGAAAAATAATCTTCTTTTAATTTATTCCTGATTTAATTTTAATTTGCAATGATTCTTCTTTACCTTGTTAATGTGATTGTGCGAAGTGTATTTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693580" ref_strand="+" ref_description="SGN-E693580 [LH_Ea01L02](-)">
      <seq>aaggccagcgtatttaaggttgcatgaaatatttgaagaaaatattgagaaaagagtaaaagggatgacgatgaagagagacggagattttttggatgtactacttgatcactgtaaagatgaaaatgatcgcaaaactataaagccgataatccttgatttattcattgctggaagtgacacatcggccctaacaatagaatgggcaatggcagaacttcttcgaaaacctgaagaactcaacaaagtaagacaagaaataatggaacaaatagggctagaaagggcagttaaagaatcagacatggacaaactcccataccttcaagcagttgtaaaagaaacgatgagacttcatccagcatctccattactcttacctcacaaagcccaacacgacgtacaagtgttgggatttaccgtgcccaaagacagtcaagttttagtgaatgcttgggccattggaagagatcccaagtattgggaaaggccgctagagtttctgcctggaagattcatggaatctagtgtggattataaaggtagagattttgagtttataccatttagcgcgggcaggagaatatgtccaggaatgccgctggctataagaatggtgaatttgatattggcttctattatacaaccatttaggtggaagttacctgatggaatgacaccagaaaaattggacatggaggaacagtttggagttactttaaagaaggggattcctcttattgcaatacctagtatcactacatcaaaaaggtgattaatgacaataacttaatatcgctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116654" stop="115220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116354" g_stop="116198" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116197" i_stop="116131" i_length="67">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116130" g_stop="115473" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="814" r_length="657" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E693580" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116354" e_stop="116198"/>
          <exon e_start="116130" e_stop="115473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCAGCGTATTTAAGGTTGCATGAAATATTTGAAGAAAACATTGAGAAAAGAGTAAAAGGGATGACGATGAAGAGAGACGGAGATTTTTTGGATGTACTACTTGATCACTGTAAAGATGAAAATGATCGCAAAACTATAAAGCCGATAATCCTTGTAAGCGTTTTTCTTAGTTTAAATTTGAGTTATTCGGGTACGACTTATATTTGTAATCCGTTGACAGGATTTATTCATTGCTGGAAGTGACACATCGGCCATAACAATAGAATGGGCAATGGCAGAACTTCTTCGAAAACCTGAAGAACTCAACAAAGTAGGACAAGAAATAATGGAACAAATAGGGCTAGAAAGGGCAGTTAAAGAATCAGACATGGACAAACTCCCATACCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCATCCAGCAACTCCATTACTCTTACCTCACAAAGCCCAACACGACGTACAAGTGTTGGGATTTACCGTGCCCAAAGACAGTCAAGTTTTAGTGAATGCTTGGGCCATTGGAAGAGATCCCAAGTCATGGGAAAGGCCGCTAGAGTTTCTGCCTGGAAGATTCATGGAATCTAGTGTGGATTATAAAGGTAGAGATTTTGAGTTTATACCATTTGGCGCGGGCAGGAGAATATGTCCAGGTATGCCGCTGGCTATAAGAATGGTGAATTTGATATTGGCTTCTATTATACAACCATTTAATTGGAAGTTACCAGATGGAATGACACCAGAAAAATTGGACATGGAGGAACAGTTTGGAGTTACTTTAAAGAAGGCTATTCCTCTTATTGCAATACCTAGTATCACTACATCAAACCATTGAGTAATGACAACAACTTAATTATCGCTATATATATATATAT</genome_strand>
        <mrna_strand>AAGGCCAGCGTATTTAAGGTTGCATGAAATATTTGAAGAAAATATTGAGAAAAGAGTAAAAGGGATGACGATGAAGAGAGACGGAGATTTTTTGGATGTACTACTTGATCACTGTAAAGATGAAAATGATCGCAAAACTATAAAGCCGATAATCCTT...................................................................GATTTATTCATTGCTGGAAGTGACACATCGGCCCTAACAATAGAATGGGCAATGGCAGAACTTCTTCGAAAACCTGAAGAACTCAACAAAGTAAGACAAGAAATAATGGAACAAATAGGGCTAGAAAGGGCAGTTAAAGAATCAGACATGGACAAACTCCCATACCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCATCCAGCATCTCCATTACTCTTACCTCACAAAGCCCAACACGACGTACAAGTGTTGGGATTTACCGTGCCCAAAGACAGTCAAGTTTTAGTGAATGCTTGGGCCATTGGAAGAGATCCCAAGTATTGGGAAAGGCCGCTAGAGTTTCTGCCTGGAAGATTCATGGAATCTAGTGTGGATTATAAAGGTAGAGATTTTGAGTTTATACCATTTAGCGCGGGCAGGAGAATATGTCCAGGAATGCCGCTGGCTATAAGAATGGTGAATTTGATATTGGCTTCTATTATACAACCATTTAGGTGGAAGTTACCTGATGGAATGACACCAGAAAAATTGGACATGGAGGAACAGTTTGGAGTTACTTTAAAGAAGGGGATTCCTCTTATTGCAATACCTAGTATCACTACATCAAAAAGGTGATTAATGACAATAACTTAA-TATCGCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545830" ref_strand="-" ref_description="SGN-E545830 [TUS-68-O3]">
      <seq>agtaaaagggatgacgatgaagagagacggagattttttggatgtactacttgatcactgtaaagatgaaaatgatcgcaaaactataaagccgataatccttgatttattcattgctggaagtgacacatcggccctaacaatagaatgggcaatggcagaacttcttcgaaaacctgaagaactcaacaaagtaagacaagaaataatcgaacaaatagggctagaaagggcagttaaagaatcagacatggacaaactcccataccttcaagcagttgtaaaagaaacgatgagacttcatccagcatctccattactcttacctcacaaagcccaacacgacgtacaagtgttgggatttaccgtgcccaaagacagtcaagttttagtgaatgcttgggccattggaagagatcccaagtattgggaaaggccgctagagtttctgcctggaagattcatggaatctagtgtggattataaaggtagagattttgagtttataccatttagcgcgggcaggagaatatgtccaggtatgccgctggctataagaatggtgaatttgatattggcttctattatacaaccatttagttggaagttacctgatggaatgacaccagaaaaattggacatggaggaacagtttggagttactttaaagaaggctattcctcttattgcaatacctagtatcactacatcaaaccattgattaatgacaacaatttaattatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116600" stop="115189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116300" g_stop="116198" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116197" i_stop="116131" i_length="67">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116130" g_stop="115489" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="745" r_length="642" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E545830" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545830" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="116300" e_stop="116198"/>
          <exon e_start="116130" e_stop="115489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAAGGGATGACGATGAAGAGAGACGGAGATTTTTTGGATGTACTACTTGATCACTGTAAAGATGAAAATGATCGCAAAACTATAAAGCCGATAATCCTTGTAAGCGTTTTTCTTAGTTTAAATTTGAGTTATTCGGGTACGACTTATATTTGTAATCCGTTGACAGGATTTATTCATTGCTGGAAGTGACACATCGGCCATAACAATAGAATGGGCAATGGCAGAACTTCTTCGAAAACCTGAAGAACTCAACAAAGTAGGACAAGAAATAATGGAACAAATAGGGCTAGAAAGGGCAGTTAAAGAATCAGACATGGACAAACTCCCATACCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCATCCAGCAACTCCATTACTCTTACCTCACAAAGCCCAACACGACGTACAAGTGTTGGGATTTACCGTGCCCAAAGACAGTCAAGTTTTAGTGAATGCTTGGGCCATTGGAAGAGATCCCAAGTCATGGGAAAGGCCGCTAGAGTTTCTGCCTGGAAGATTCATGGAATCTAGTGTGGATTATAAAGGTAGAGATTTTGAGTTTATACCATTTGGCGCGGGCAGGAGAATATGTCCAGGTATGCCGCTGGCTATAAGAATGGTGAATTTGATATTGGCTTCTATTATACAACCATTTAATTGGAAGTTACCAGATGGAATGACACCAGAAAAATTGGACATGGAGGAACAGTTTGGAGTTACTTTAAAGAAGGCTATTCCTCTTATTGCAATACCTAGTATCACTACATCAAACCATTGAGTAATGACAACAACTTAATTATCG</genome_strand>
        <mrna_strand>AGTAAAAGGGATGACGATGAAGAGAGACGGAGATTTTTTGGATGTACTACTTGATCACTGTAAAGATGAAAATGATCGCAAAACTATAAAGCCGATAATCCTT...................................................................GATTTATTCATTGCTGGAAGTGACACATCGGCCCTAACAATAGAATGGGCAATGGCAGAACTTCTTCGAAAACCTGAAGAACTCAACAAAGTAAGACAAGAAATAATCGAACAAATAGGGCTAGAAAGGGCAGTTAAAGAATCAGACATGGACAAACTCCCATACCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCATCCAGCATCTCCATTACTCTTACCTCACAAAGCCCAACACGACGTACAAGTGTTGGGATTTACCGTGCCCAAAGACAGTCAAGTTTTAGTGAATGCTTGGGCCATTGGAAGAGATCCCAAGTATTGGGAAAGGCCGCTAGAGTTTCTGCCTGGAAGATTCATGGAATCTAGTGTGGATTATAAAGGTAGAGATTTTGAGTTTATACCATTTAGCGCGGGCAGGAGAATATGTCCAGGTATGCCGCTGGCTATAAGAATGGTGAATTTGATATTGGCTTCTATTATACAACCATTTAGTTGGAAGTTACCTGATGGAATGACACCAGAAAAATTGGACATGGAGGAACAGTTTGGAGTTACTTTAAAGAAGGCTATTCCTCTTATTGCAATACCTAGTATCACTACATCAAACCATTGATTAATGACAACAATTTAATTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354712" ref_strand="+" ref_description="SGN-E354712 [cLHT-5-F2]">
      <seq>gataattaaattgttgtcattaatcaatggtttgatgtagtgatactaggtattgcaataagaggaatagccttctttaaagtaactccaaactgttcctccatgtccaatttttctggtgtcattccatcaggtaacttccaactaaatggttgtataatagaagccaatatcaaattcaccattcttatagccagcggcatacctggacatattctcctgcccgcgctaaatggtataaactcaaaatctctacctttataatccacactagattccatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115190" stop="116074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115490" g_stop="115774" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E354712" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115490" e_stop="115774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATTAAGTTGTTGTCATTACTCAATGGTTTGATGTAGTGATACTAGGTATTGCAATAAGAGGAATAGCCTTCTTTAAAGTAACTCCAAACTGTTCCTCCATGTCCAATTTTTCTGGTGTCATTCCATCTGGTAACTTCCAATTAAATGGTTGTATAATAGAAGCCAATATCAAATTCACCATTCTTATAGCCAGCGGCATACCTGGACATATTCTCCTGCCCGCGCCAAATGGTATAAACTCAAAATCTCTACCTTTATAATCCACACTAGATTCCATGAAT</genome_strand>
        <mrna_strand>GATAATTAAATTGTTGTCATTAATCAATGGTTTGATGTAGTGATACTAGGTATTGCAATAAGAGGAATAGCCTTCTTTAAAGTAACTCCAAACTGTTCCTCCATGTCCAATTTTTCTGGTGTCATTCCATCAGGTAACTTCCAACTAAATGGTTGTATAATAGAAGCCAATATCAAATTCACCATTCTTATAGCCAGCGGCATACCTGGACATATTCTCCTGCCCGCGCTAAATGGTATAAACTCAAAATCTCTACCTTTATAATCCACACTAGATTCCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392638" ref_strand="+" ref_description="SGN-E392638 [TUS-35-P8](-)">
      <seq>catttgaggcggagattgcattgggtgatttgtctggatggtgggagaggacgacatcaaagaattcagatatatgtcgtgatgaagtaatgaagtgttcaaagaatgagtcttgtggtgcttgtgataagagtggtgaggaagtgaaggaagagacacaagtagattatccaatggattattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaatctaatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcaggtggaatggaaaaagggtgatgctaaggctgtaaaagtatggagaaaccacctgctaccttttgatcacgggcgtaatttatttagcctagaaaaggattttcaaataaatctgggtattcaccgaggtgctattaaagggaaggctggaaagttcgcaaatgtaatgcatgtggtatcttgcttagattttcaaagttgatagctctttttgtcttagcgtcattgttaaaaacttttaaggtttgatgaaatatgattctgttaatttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122464" stop="120460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122164" g_stop="121810" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121809" i_stop="121036" i_length="774">
            <donor d_prob="0.117" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121035" g_stop="120763" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="628" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="640"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E392638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122164" e_stop="121810"/>
          <exon e_start="121035" e_stop="120763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTGCTCCTTTGCGTCATGCAGTCTATCTATTGATCAACCCCAGGAGAGAGTTGCTATCTTGTATCTTGCTATTTCACTTCATGCATCCTTTTATCGACCAACTCCAACAATTTAGGTGCAAGCCCAGCTGTCCAAATTTATTCCTTAGTTCCAGCAGAAACAGTATATTTTTTTTTTAAAGAACAGTCTGCCACTTTGTTAAGATATTTAATAGGTAAAATACAGCGGGCTTTTGGGGAAGGCTTAGATCTAGTGAATCATTATGGTGACAAAGTAATCCGTCTTCGTGATAGACTCGTCCTAGAATGTGAGGGATCCGGTTGCATTATATATATATATATATATATATATATATATATATATTCTTTTTCTTTCATTTCTTTCTACATTCCTATTGTTGTAACTTCCTTGCATCACATAGGTCAAGAGATGCGAGATATAGAGATCTGCTGAGTGATGGTATATTATGTCTCTTAAAAGGTTGATGACATAAAAAACTGGGCTTCTCTGTTTCTTATAATCCATGTTATATGCTTGTTGTTAGGGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</genome_strand>
        <mrna_strand>CATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392571" ref_strand="+" ref_description="SGN-E392571 [TUS-35-O8](-)">
      <seq>aaatgagtattgtggtgattgtgataagagtggtgaggaagtgaaggaagagacacaagtccccccccccccccctattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaatctaatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcaggtggaatggaaaaagggtgatgctaaggctgtaaaagtatggagaaaccacctgctaccttttgatcacgggcgtaatttatttagcctagaaaaggattttcaaataaatctgggtattcaccgaggtgctattaaagggaaggctggaaagttcgcaaatgtaatgcatgtggtatcttgcttagattttcaaagttgatagctctttttgtcttagcgtcattgttaaaaacttttaaggtttgatgaaatatgattctgttaatttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122360" stop="120460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122061" g_stop="121810" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121809" i_stop="121036" i_length="774">
            <donor d_prob="0.117" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121035" g_stop="120763" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="524" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="536"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E392571" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122061" e_stop="121810"/>
          <exon e_start="121035" e_stop="120763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTGCTCCTTTGCGTCATGCAGTCTATCTATTGATCAACCCCAGGAGAGAGTTGCTATCTTGTATCTTGCTATTTCACTTCATGCATCCTTTTATCGACCAACTCCAACAATTTAGGTGCAAGCCCAGCTGTCCAAATTTATTCCTTAGTTCCAGCAGAAACAGTATATTTTTTTTTTAAAGAACAGTCTGCCACTTTGTTAAGATATTTAATAGGTAAAATACAGCGGGCTTTTGGGGAAGGCTTAGATCTAGTGAATCATTATGGTGACAAAGTAATCCGTCTTCGTGATAGACTCGTCCTAGAATGTGAGGGATCCGGTTGCATTATATATATATATATATATATATATATATATATATATTCTTTTTCTTTCATTTCTTTCTACATTCCTATTGTTGTAACTTCCTTGCATCACATAGGTCAAGAGATGCGAGATATAGAGATCTGCTGAGTGATGGTATATTATGTCTCTTAAAAGGTTGATGACATAAAAAACTGGGCTTCTCTGTTTCTTATAATCCATGTTATATGCTTGTTGTTAGGGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</genome_strand>
        <mrna_strand>AAATGAGTATTGTGGTGATTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGT-CCCCCCCCCCCCCCCTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392332" ref_strand="+" ref_description="SGN-E392332 [TUS-35-O6](-)">
      <seq>gagtggtgaggaagtgaaggaagagacacaagtagcccccccccccctctattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaataataatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcaggtggaatggaaaaagggtgatgctaaggctgtaaaagtatggagaaaccacctgctaccttttgatcacgggcgtaatttatttagcctagaaaaggattttcaaataaatctgggtattcaccgaggtgctattaaagggaaggctggaaagttcgcaaatgtaatgcatgtggtatcttgcttagattttcaaagttgatagctctttttgtcttagcgtcagggttacaaacttttaaggtttgatgaaatatgattctgttaatttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122334" stop="120460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122034" g_stop="121810" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121809" i_stop="121036" i_length="774">
            <donor d_prob="0.117" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121035" g_stop="120763" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="499" r_length="273" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="511"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E392332" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122034" e_stop="121810"/>
          <exon e_start="121035" e_stop="120763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAAT-CTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTGCTCCTTTGCGTCATGCAGTCTATCTATTGATCAACCCCAGGAGAGAGTTGCTATCTTGTATCTTGCTATTTCACTTCATGCATCCTTTTATCGACCAACTCCAACAATTTAGGTGCAAGCCCAGCTGTCCAAATTTATTCCTTAGTTCCAGCAGAAACAGTATATTTTTTTTTTAAAGAACAGTCTGCCACTTTGTTAAGATATTTAATAGGTAAAATACAGCGGGCTTTTGGGGAAGGCTTAGATCTAGTGAATCATTATGGTGACAAAGTAATCCGTCTTCGTGATAGACTCGTCCTAGAATGTGAGGGATCCGGTTGCATTATATATATATATATATATATATATATATATATATATTCTTTTTCTTTCATTTCTTTCTACATTCCTATTGTTGTAACTTCCTTGCATCACATAGGTCAAGAGATGCGAGATATAGAGATCTGCTGAGTGATGGTATATTATGTCTCTTAAAAGGTTGATGACATAAAAAACTGGGCTTCTCTGTTTCTTATAATCCATGTTATATGCTTGTTGTTAGGGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</genome_strand>
        <mrna_strand>GAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGCCCCCCCCCCCCTCTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATAATAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCAGGGTTACAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539911" ref_strand="+" ref_description="SGN-E539911 [TUS-59-O17](-)">
      <seq>cgaggattgcattgtttgaggatgcagtggatgcctggattcagattgcttgtccgaggttgtcaattgattggggagatgcatttaaaaagcctttgctaacaccatttgaggcggagattgcattgggtgatttgtctggatggtgggagaggacgacatcaaagaattcagatatatgtcgtgatgaagtaatgaagtgttcaaagaatgagtcttgtggtgcttgtgataagagtggtgaggaagtgaaggaagagacacaagtagattatccaatggattattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaatctaatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcagtgagtacctccctcgtattttctgttgaggccttttagctcaagtctccatgcccgtaaaattttttataaatatatttatttgttttacaggacttgtttggaatattatctttaacactttagtggtgttattttcctatccttatgtgagttatatctatgtatcttggtgtcaaaactctaattatgcgagacaataacaaagttttttaaaaaaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122569" stop="121282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122269" g_stop="121577" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E539911" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122269" e_stop="121577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTG</genome_strand>
        <mrna_strand>CGAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539914" ref_strand="+" ref_description="SGN-E539914 [TUS-59-O17]">
      <seq>cgaggattgcattgtttgaggatgcagtggatgcctggattcagattgcttgtccgaggttgtcaattgattggggagatgcatttaaaaagcctttgctaacaccatttgaggcggagattgcattgggtgatttgtctggatggtgggagaggacgacatcaaagaattcagatatatgtcgtgatgaagtaatgaagtgttcaaagaatgagtcttgtggtgcttgtgataagagtggtgaggaagtgaaggaagagacacaagtagattatccaatggattattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaatctaatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcagtgagtacctccctcgtattttctgttgaggccttttagctcaagtctccatgcccgtaaaattttttataaatatatttatttgttttacaggacttgtttggaatattatctttaacactttagtggtgttattttcctatccttatgtgagttatatctatgtatcttggtgtcaaaactctaattatgcgagacaataacaaagttttttaaaaaaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122569" stop="121282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122269" g_stop="121577" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E539914" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122269" e_stop="121577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTG</genome_strand>
        <mrna_strand>CGAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288093" ref_strand="+" ref_description="SGN-E288093 [cLES-7-E23]">
      <seq>gaggattgcattgtttgaggatgcagtggatgcctggattcagattgcttgtccgaggttgtcaattgattggggagatgcatttaaaaagcctttgctaacaccatttgaggcggagattgcattgggtgatttgtctggatggtgggagaggacgacatcaaagaattcagatatatgtcgtgatgaagtaatgaagtgttcaaagaatgagtcttgtggtgcttgtgataagagtggtgaggaagtgaaggaagagacacaagtagattatccaatggattattatgctcaggatggtggggagtggaattcttgctactccaagaagcctgctagactttcacaaagaaatagccaatcttgtaatggtgccactgccatcaaatctaatagctgagctaacttgttccagctggacatattactgccatcgtaaatggagtttacacttctgcagtgagtacctccctcgtattttctgttgaggccttttagctcaaatctccatgcccgtaaaatnttttataaatatatttatttgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122568" stop="121420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122268" g_stop="121720" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E288093" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122268" e_stop="121720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTA</genome_strand>
        <mrna_strand>GAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAATCTCCATGCCCGTAAAATNTTTTATAAATATATTTATTTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273678" ref_strand="+" ref_description="SGN-E273678 [cLEN-6-F24]">
      <seq>acaattcaatttgcttgtgcaattcgggcggttaagcccgaacttgaaaaattggggtctagtattttgattcctcaagctaaaccgttatcagctggggaggtactcggctgtactgccccgagtgttaataacagattttctgatggagagaatgtagttttgatatttgtggctgacggtaggtttcatttggaggcgtttatgatagcgaatccggggataaagacttacagatatgatccgtttatagggaagttgtttgtggaggagtatgatcataatggaatgaaggatgataggaagagagcgattgaaaaagccaggggggcgaagaattgggggatagtgcttgggacattaggtacgcaagggaatccaaggatattggataggttagagaagaaaatgtccgaaaaggggattacttggacagatgtgttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123032" stop="121984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122732" g_stop="122284" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E273678" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122732" e_stop="122284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGTATGATCATAAGGGAATGAAGGAGGAGAGGAAGAGAGCGATTGAAAAAGCCAGGGGGGCGAAGAATTGGGGGATAGTGCTTGGGACATTAGGTAGGCAAGGGAATCCAAGGATATTGGATAGGTTAGAGAAGAAAATGTCCGAAAAGGGGATGACTTGGACAGTTGTGTTGATGTC</genome_strand>
        <mrna_strand>ACAATTCAATTTGCTTGTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTCTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAATAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGTATGATCATAATGGAATGAAGGATGATAGGAAGAGAGCGATTGAAAAAGCCAGGGGGGCGAAGAATTGGGGGATAGTGCTTGGGACATTAGGTACGCAAGGGAATCCAAGGATATTGGATAGGTTAGAGAAGAAAATGTCCGAAAAGGGGATTACTTGGACAGATGTGTTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254008" ref_strand="+" ref_description="SGN-E254008 [cLEG-34-O11]">
      <seq>tttgatatttgtggctgacggtaggtttcatttggaggcgtttatgatagcgaatccggggataaagacttacagatatgatccgtttatagggaagttgtttgtggaggagtatgatcataagggaatgaaggaggagaggaagagagcgattgaaaaagccaggggggcgaaaaattgggggatagtgcttgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122871" stop="122073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122571" g_stop="122373" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E254008" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122571" e_stop="122373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGTATGATCATAAGGGAATGAAGGAGGAGAGGAAGAGAGCGATTGAAAAAGCCAGGGGGGCGAAGAATTGGGGGATAGTGCTTGGGACA</genome_strand>
        <mrna_strand>TTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGTATGATCATAAGGGAATGAAGGAGGAGAGGAAGAGAGCGATTGAAAAAGCCAGGGGGGCGAAAAATTGGGGGATAGTGCTTGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397880" ref_strand="+" ref_description="SGN-E397880 [TUS-35-P8]">
      <seq>gacaattcaatttgcttctgcaattcgggcggttaagcccgaacttgaaaaattggggtttagtattttgattcctcaagctaaaccgttatcagctggggaggtactcggctgtactgccccgagtgttaagaacagattttctgatggagagaatgtagttttgatatttgtggctgacggtaggtttcatttggaggcgtttatgatagcgaatccggggataaagacttacagatatgatccgtttatagggaagttgtttgtgcaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123033" stop="122159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122733" g_stop="122459" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E397880" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122733" e_stop="122459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGT</genome_strand>
        <mrna_strand>GACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGCAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397870" ref_strand="+" ref_description="SGN-E397870 [TUS-35-O6]">
      <seq>gacaattcaatttgcttctgcaattcgggcggttaagcccgaacttgaaaaattggggtttagtattttgattcctcaagctaaaccgttatcagctggggaggtactcggctgtactgccccgagtgttaagaacagattttctgatggagagaatgtagttttgatatttgtggctgacggtaggtttcatttggaggcgtttatgatagcgaatccggggataaagacttacagatatgatccgtttatagggaagttgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123033" stop="122167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122733" g_stop="122467" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E397870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122733" e_stop="122467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGT</genome_strand>
        <mrna_strand>GACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332438" ref_strand="+" ref_description="SGN-E332438 [cTOD-17-D15]">
      <seq>tcaacccggccgcgtccgaagaggttcgtgaagaaccaaataccagactccatcctaaacgatgcagcactcaacgccgccatatcacttttacctcaaaactacaacttcgaaatccacaagtgtgtatggcgagtgcgaacttcaagtgccaagcgtgtggccctgcagttccctgagggtctcctcatgtactcactcatcatctccgatatactctccacattcacttccgccactcactgtttcatcctcggcgacgtgactttcggcgcgtgttgcgttgacgacctctcggcgggagcgctttccgctgatctcctcattcatttcggccatagctgcctcgtgcctattgattccaccactatcccatgcctttatatattcgtcgaaatctcaatcgatgttcacaggttgttgaatgaactcaaactcaatttttataattccgatacgtatgacaatatcattatggctgggacaattcaatttgcttctgcaattcgggcggttaagcccgaacttgaaaaattggggtttagtattttgattcctcaagctaaaccgttatcagctggggaggtactcggctgtactgccccgagtgttaagaacagattttctgatggagagaatgtagttttgatatttgtggctgacggtaggtttcatttggaggcgtttatgatagcgaatccggggataaagacttacagatatgatccgtttatagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123515" stop="122176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123215" g_stop="122476" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E332438" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123215" e_stop="122476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAA</genome_strand>
        <mrna_strand>TCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212219" ref_strand="+" ref_description="SGN-E212219 [cLEC-75-A4]">
      <seq>agaaagaacacggcggccttctcccactgaaccctactccggcggcggcggcgtcagcgacgaccgcagttgacgctggagatcagcagtcactgcagcagtcaacccggccgcgtccgaagaggttcgtgaagaaccaaataccagactccatcctaaacgatgcagcactcaacgccgccatatcacttttacctcaaaactacaacttcgaaatccacaagtgtgtatggcgagtgcgaacttcaagtgccaagcgtgtggccctgcagttccctgagggtctcctcatgtactcactcatcatctccgatatactctccacattcacttccgccactcactgtttcatcctcggcgacgtgactttcggcgcgtgttgcgttgacgacctctcggcgggagcgctttccgctgatctcctcattcatttcggccatagctgcctcgtgcctattgattccaccactatcccatgcctttatatattcgtcgaaatctcaatcgatgttcacaggttgttgaatgaactcaaactcaatttttataattccgatacgtatgacaatatcattatggctgggacaattcaatttgcttctgcaattcgggcggttaagcccgaacttgaaaaattggggtttagtattttgattcctcaagctaaaccgttatcagctggggaggtactcggctgtactgccccgagtgttaagacagattttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123616" stop="122286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123316" g_stop="122586" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E212219" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123316" e_stop="122586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAACACGGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGAT</genome_strand>
        <mrna_strand>AGAAAGAACACGGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAG-ACAGATTTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325279" ref_strand="+" ref_description="SGN-E325279 [cTOC-1-D1]">
      <seq>ggcggccttctcccactgaaccctactccggcggcggcggcgtcagcgacgaccgcagttgacgctggagatcagcagtcactgcagcagtcaacccggccgcgtccgaagaggttcgtgaagaaccaaataccagactccatcctaaacgatgcagcactcaacgccgccatatcacttttacctcaaaactacaacttcgaaatccacaagtgtgtatggcgagtgcgaacttcaagtgccaagcgtgtggccctgcagttccctgagggtctcctcatgtactcactcatcatctccgatatactctccacattcacttccgccactcactgtttcatcctcggcgacgtgactttcggcgcgtgttgcgttgacgacctctcggcgggagcgctttccgctgatctcctcattcatttcggccatagctgcctcgtgcctatggattccaccactatcccatgcctttatatattcgtcgaaatctcaatcgatgttcacaggttgttgaatgaactcaaactcaatttttataattccgatacgtatgacaatatcattatggctgggacaattcaatttgcttctgcaattcgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123605" stop="122403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123305" g_stop="122703" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E325279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123305" e_stop="122703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCG</genome_strand>
        <mrna_strand>GGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATGGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320494" ref_strand="+" ref_description="SGN-E320494 [cTOB-22-C9]">
      <seq>cttctcccactgaaccctactccggcggcggcggcgtcagcgacgaccgcagttgacgctggagatcagcagtcactgcagcagtcaacccggccgcgtccgaagaggttcgtgaagaaccaaataccagactccatcctaaacgatgcagcactcaacgccgccatatcacttttacctcaaaactacaacttcgaaatccacaagtgtgtatggcgagtgcgaacttcaagtgccaagcgtgtggccctgcagttccctgagggtctcctcatgtactcactcatcatctccgatatactctccacattcacttccgccactcactgtttcatcctcggcgacgtgactttcggcgcgtgttgcgttgacgacctctcggcgggagcgctttccgctgatctcctcattcatttcggncatagctgcctcgtgcctattgattccaccactatcccatgcctttatatattcgtcgaaatctcaatcgatgttcacaggttgttgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123599" stop="122487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123299" g_stop="122787" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E320494" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123299" e_stop="122787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAA</genome_strand>
        <mrna_strand>CTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGNCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331262" ref_strand="+" ref_description="SGN-E331262 [cTOD-6-F19]">
      <seq>aaactatggagaaagaacacggcggccttctcccactgaaccctactccggcggcggcggcgtcagcgacgaccgcagttgacgctggagatcagcagtcactgcagcagtcaacccggccgcgtccgaagaggttcgtgaagaaccaaataccagactccatcctaaacgatgcagcactcaacgccgccatatcacttttacctcaaaactacaacttcgaaatccacaagtgtgtatggcgagtgcgaacttcaagtgccaagcgtgtggccctgcagttccctgagggtctcctcatgtactcactcatcatctccgatatactctccacattcacttccgccactcactgtttcatcctcggcgacgtgactttcggcgcgtgttgcgttgacgacctctcggcgggagcgctttccgctgatctcctcattcatttcggccatagctgcctcgtgcctattgattccaccactatcccatgcctttatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123625" stop="122528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123325" g_stop="122828" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E331262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123325" e_stop="122828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATGGAGAAAGAACACGGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATAT</genome_strand>
        <mrna_strand>AAACTATGGAGAAAGAACACGGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698460" ref_strand="+" ref_description="SGN-E698460 [FA06BG01]">
      <seq>cgctatgcttggaatcaggtattatatgcgcaaaatgggagaggctgcaggaattccgatagaacctgaatcacaaactcaccttctggatacaacgatgagtatggagggggttctgttggctggtgttcctggtgctggtggttttgatgcggtctttgctgtcactttgggggcttcaagcaaaaatgtgacaaaaacttggagttcactcaatgttcttgctatgctagttacggaagatccccgcggtgtatctttggaagagcatgatcctcgagcaaaggaaattactgcagctgtttcttcaatccaacttcaataatgatctgcatgtataggatattatatccaatggatatattatgacttcaacatcagattttacaacacaaaaaggatatattagagctctgaattgtaacgtcagaatcactttcatcaataagcacctaatgagagcctgttgtatttttacccaaaactttgatcttgttagaattagttccattttacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="124951" stop="123720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124652" g_stop="124595" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124594" i_stop="124485" i_length="110">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124484" g_stop="124014" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="529" r_length="471" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E698460" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124652" e_stop="124595"/>
          <exon e_start="124484" e_stop="124014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATGCTTGGAATCAGGTATTATATGCGCAAAATGGGAGAGGCTGCAGGAATTCCGGTAAGTTTGTCGCTACCATGTACTTAAAATCAAAAGCTCTTAAGAGTCAGCTGCATTGCTGTCTTCTCCCATTTTTTTAAACCATCCTTCACCATGTGTTAAATTCACAGATAGAACCTGAATCACAAACTCACCTTCTGGATACAACGATGAGTATGGAGGGGGTTCTGTTGGCTGGTGTTCCTGGTGCTGGTGGTTTTGATGCGGTCTTTGCTGTCACTTTGGGGGCTTCAAGCAAAAATGTGACAAAAACTTGGAGTTCACTCAATGTTCTTGCTATGCTAGTTACGGAAGATCCCCGCGGTGTATCTTTGGAAGAGCATGATCCTCGAGCAAAGGAAATTACTGCAGCTGTTTCTTCAATCCAACTTCAATAATGATCTGCATGTATAGGATATTATATCCAATGGATATATTATGACTTCAACATCAGATTTTACAACACAAAAAGGATATATTAGAGCTCTGAATTGTAACGTCAGAATCACTTTCATCAATAAGCACCTAATGAGAGCCTGTTGTATTTTTACCCAAAACTTTGATCTTGTTAGAATTAGTTCCATTTTACTTCAGAACTCTGT</genome_strand>
        <mrna_strand>CGCTATGCTTGGAATCAGGTATTATATGCGCAAAATGGGAGAGGCTGCAGGAATTCCG..............................................................................................................ATAGAACCTGAATCACAAACTCACCTTCTGGATACAACGATGAGTATGGAGGGGGTTCTGTTGGCTGGTGTTCCTGGTGCTGGTGGTTTTGATGCGGTCTTTGCTGTCACTTTGGGGGCTTCAAGCAAAAATGTGACAAAAACTTGGAGTTCACTCAATGTTCTTGCTATGCTAGTTACGGAAGATCCCCGCGGTGTATCTTTGGAAGAGCATGATCCTCGAGCAAAGGAAATTACTGCAGCTGTTTCTTCAATCCAACTTCAATAATGATCTGCATGTATAGGATATTATATCCAATGGATATATTATGACTTCAACATCAGATTTTACAACACAAAAAGGATATATTAGAGCTCTGAATTGTAACGTCAGAATCACTTTCATCAATAAGCACCTAATGAGAGCCTGTTGTATTTTTACCCAAAACTTTGATCTTGTTAGAATTAGTTCCATTTTACTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219779" ref_strand="+" ref_description="SGN-E219779 [cLEL-24-C7](-)">
      <seq>ggcaccagcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134137" stop="5841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133843" g_stop="133612" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133611" i_stop="133208" i_length="404">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133207" g_stop="133190" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="250" r_length="18" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E219779" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133843" e_stop="133612"/>
          <exon e_start="133207" e_stop="133190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATTGTTGTTATTCCTCCAAATTTGCCGACTGAGTGGGGACTCCTTCCTCTAACAATGGCGGTATTGTCAAGCGCTGGAAATGGAGAATCTTTTGGCAGGAAGCACTTCACCCTTTTTAATGGGCTTACCTCGTCATTTGACGACTCAGTGCATGGGTGTTACGAGTCCATTCCATTGACTAGGGATATAATAATTCAATATATTGAATGTGAATTATAGTTAGATTTTGAAGTATTTTAATAGTTAAACCAAAGACTATGA</genome_strand>
        <mrna_strand>GGCACCAGCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGT....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219923" ref_strand="+" ref_description="SGN-E219923 [cLEL-24-C7](-)">
      <seq>ggcaccagcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134137" stop="5841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133843" g_stop="133612" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133611" i_stop="133208" i_length="404">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133207" g_stop="133190" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="250" r_length="18" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E219923" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133843" e_stop="133612"/>
          <exon e_start="133207" e_stop="133190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATTGTTGTTATTCCTCCAAATTTGCCGACTGAGTGGGGACTCCTTCCTCTAACAATGGCGGTATTGTCAAGCGCTGGAAATGGAGAATCTTTTGGCAGGAAGCACTTCACCCTTTTTAATGGGCTTACCTCGTCATTTGACGACTCAGTGCATGGGTGTTACGAGTCCATTCCATTGACTAGGGATATAATAATTCAATATATTGAATGTGAATTATAGTTAGATTTTGAAGTATTTTAATAGTTAAACCAAAGACTATGA</genome_strand>
        <mrna_strand>GGCACCAGCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGT....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349097" ref_strand="+" ref_description="SGN-E349097 [cTOS-2-D15]">
      <seq>tgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgctgttttcctgaagctctttagctaggttttctaccctttcatttgcttgtttagtattattagcttgtgagttgagacaaagatcttattcttctccagaaggcaaattgtactttttcctgttttagactaaacaaagtatttctcaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134346" stop="5841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134046" g_stop="133448" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133447" i_stop="133208" i_length="240">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133207" g_stop="133196" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="611" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E349097" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134046" e_stop="133448"/>
          <exon e_start="133207" e_stop="133196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATTGTTGTTATTCCTCCAAATTTGCCGACTGAGTGGGGACTCCTTCCTCTAACAATGGCGGTATTGTCAAGCGCTGGAAATGGAGAATCTTTTGGCAGGAAGCACTTCACCCTTTTTAATGGGCTTACCTCGTCATTTGACGACTCAGTGCATGGGTGTTACGAGTCCATTCCATTGACTAGGGATATAATAATTCAATATATTGAATGTGAATTATAGTTAGATTTTGAAGTATTTTAATAGTTAAACCAAAGA</genome_strand>
        <mrna_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTAAAAAA................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352527" ref_strand="+" ref_description="SGN-E352527 [cTOS-9-M16]">
      <seq>tgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgctgttttcctgaagctctttagctaggttttctaccctttcatttgcttgtttagtattattagcttgtgagttgagacaaagatcttattcttctccagaaggcaaattgtactttttcctgttttagactaaacaaagtatttctcaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134346" stop="5841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134046" g_stop="133448" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133447" i_stop="133208" i_length="240">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133207" g_stop="133196" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="611" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E352527" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134046" e_stop="133448"/>
          <exon e_start="133207" e_stop="133196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATTGTTGTTATTCCTCCAAATTTGCCGACTGAGTGGGGACTCCTTCCTCTAACAATGGCGGTATTGTCAAGCGCTGGAAATGGAGAATCTTTTGGCAGGAAGCACTTCACCCTTTTTAATGGGCTTACCTCGTCATTTGACGACTCAGTGCATGGGTGTTACGAGTCCATTCCATTGACTAGGGATATAATAATTCAATATATTGAATGTGAATTATAGTTAGATTTTGAAGTATTTTAATAGTTAAACCAAAGA</genome_strand>
        <mrna_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTAAAAAA................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239017" ref_strand="-" ref_description="SGN-E239017 [cLEL-9-B1](-)">
      <seq>tttttttttttttttttttttttttttttttacttgagaaatgctttgtttaatctaaaacggggaaaagtacaatttgccttttggagaagaataagatctttgtcttaactcacaagcttataatactaaacaagcaaatgaaagggtagaaaacctagctaaagagcttcaggaaaacagcataatacatgccaaacggcaataatatattattccaagttgcgcatcacccatagcaacagccatgacttccattacaccaatgacttggaaacttattagggaaccaaaattaatgggttttagcgacacaccaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5841" stop="134048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133233" g_stop="133262" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.467"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133263" i_stop="133452" i_length="190">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133453" g_stop="133748" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="326" r_length="296" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E239017" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239017" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133233" e_stop="133262"/>
          <exon e_start="133453" e_stop="133748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATTCACATTCAATATATTGAATTATTATATCCCTAGTCAATGGAATGGACTCGTAACACCCATGCACTGAGTCGTCAAATGACGAGGTAAGCCCATTAAAAAGGGTGAAGTGCTTCCTGCCAAAAGATTCTCCATTTCCAGCGCTTGACAATACCGCCATTGTTAGAGGAAGGAGTCCCCACTCAGTCGGCAAATTTGGAGGAATAACAACAATAGTACTTGAGAAATACTTTGTTTAGTCTAAAACAGGAAAAAGTACAATTTGCCTTCTGGAGAAGAATAAGATCTTTGTCTCAACTCACAAGCTAATAATACTAAACAAGCAAATGAAAGGGTAGAAAACCTAGCTAAAGAGCTTCAGGAAAACAGCATAATACATGCCAAACGGCAATAATATAGTATTCCAAGTTGCGCATCACCCATAGCAACAGCCATGACTTCCATTACACCAATGACTTGGAAACTTATTAGGGAACCAAAATTAATGGGTATCAGCGACACACCAACATGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................TACTTGAGAAATGCTTTGTTTAATCTAAAACGGGGAAAAGTACAATTTGCCTTTTGGAGAAGAATAAGATCTTTGTCTTAACTCACAAGCTTATAATACTAAACAAGCAAATGAAAGGGTAGAAAACCTAGCTAAAGAGCTTCAGGAAAACAGCATAATACATGCCAAACGGCAATAATATATTATTCCAAGTTGCGCATCACCCATAGCAACAGCCATGACTTCCATTACACCAATGACTTGGAAACTTATTAGGGAACCAAAATTAATGGGTTTTAGCGACACACCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228391" ref_strand="+" ref_description="SGN-E228391 [cLED-3-D20]">
      <seq>taggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgctgttttcctgaagctctttagctaggttttctaccctttcatttgcttgtttagtattattagcttgtgagttgagacaaagatcttattcttctccagaaggcaaattgtactttttcctgttttagactaaacaaagtatttctcaagtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134311" stop="133153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134011" g_stop="133448" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E228391" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134011" e_stop="133448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATT</genome_strand>
        <mrna_strand>TAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744543" ref_strand="+" ref_description="SGN-E744543 [GI|399601]">
      <seq>tgacatagtactattactctccagaaggcaaattgtactttttcctgttttagactaaacaaagtatttctcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="133829" stop="133154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133530" g_stop="133454" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E744543" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>77</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133530" e_stop="133454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGT</genome_strand>
        <mrna_strand>TGACATAG-TACTATTACTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356973" ref_strand="+" ref_description="SGN-E356973 [cTOS-22-N6]">
      <seq>tgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttcaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgctgttttcctgaaagctcttagctangttttctaccctttcatttgcttgtttagtattattagcttgtgangtgagaacaagatcttattctttctcagaagggcaattgtactttttcctgtttagactaaacaagtattttctcagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134346" stop="133153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134046" g_stop="133467" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="604"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E356973" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134046" e_stop="133467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTG-AAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAA</genome_strand>
        <mrna_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTT-CAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAAGCTC-TTAGCTANGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGANGTGAGAACAAGATCTTATTCTTTCTCAGAAGGGCAATTGTACTTTTTCCTG-TTTAGACTAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206940" ref_strand="+" ref_description="SGN-E206940 [cLEC-33-K17]">
      <seq>tagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgctgttttcctgaagctctttagctaggttttctaccctttcatttgcttgtttagtattattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135027" stop="133241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134727" g_stop="134682" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134107" g_stop="133541" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="613" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E206940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134727" e_stop="134682"/>
          <exon e_start="134107" e_stop="133541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGC</genome_strand>
        <mrna_strand>TAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210983" ref_strand="+" ref_description="SGN-E210983 [cLEC-69-F16]">
      <seq>gacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttgggatactatattattgccgtttggcatgtattatgctgttttcctgaagctctttagctaggttttctaccctttcatttgcttggttagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135281" stop="133246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134981" g_stop="134950" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="186" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134107" g_stop="133546" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="748" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E210983" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134981" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="133546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTA</genome_strand>
        <mrna_strand>GACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGGATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGGTTAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354069" ref_strand="+" ref_description="SGN-E354069 [cTOS-16-M8]">
      <seq>tgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaagatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctggtgctatgggtgatgcgcaacttggaatactatattattgcccgttggcatgtattatgctgttttcctgaagctctttagctagggtttctaccccttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134346" stop="133261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134046" g_stop="133561" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E354069" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134046" e_stop="133561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTT</genome_strand>
        <mrna_strand>TGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAAGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGGTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCCGTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGGTTTCTACCCCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299253" ref_strand="+" ref_description="SGN-E299253 [cLET-43-G16]">
      <seq>tttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgcctcgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134302" stop="133304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134002" g_stop="133604" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E299253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134002" e_stop="133604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCT</genome_strand>
        <mrna_strand>TTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTCGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374208" ref_strand="+" ref_description="SGN-E374208 [TUS-33-H15](-)">
      <seq>ttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggttggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135319" stop="133311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135115" g_stop="135108" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="74" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="228" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134107" g_stop="133618" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="718" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E374208" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135115" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="133618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTG</genome_strand>
        <mrna_strand>TTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGTTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390707" ref_strand="+" ref_description="SGN-E390707 [TUS-46-N6](-)">
      <seq>ggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattattgccgtttggcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135133" stop="133311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134833" g_stop="134682" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134107" g_stop="133618" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="642" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="658"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E390707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134833" e_stop="134682"/>
          <exon e_start="134107" e_stop="133618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTG</genome_strand>
        <mrna_strand>GGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726297" ref_strand="+" ref_description="SGN-E726297 [LA11BF09]">
      <seq>agactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136065" stop="133327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135765" g_stop="135719" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="139" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="359" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134107" g_stop="133627" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="840" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E726297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135765" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="133627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTAT</genome_strand>
        <mrna_strand>AGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202623" ref_strand="+" ref_description="SGN-E202623 [cLEC-19-H22]">
      <seq>tagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaataagtttccaagtcattggtgtaatggaagtcatggctgttgctatgggtgatgcgcaacttggaatactatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135027" stop="133328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134727" g_stop="134682" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134107" g_stop="133628" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="526" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E202623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134727" e_stop="134682"/>
          <exon e_start="134107" e_stop="133628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTA</genome_strand>
        <mrna_strand>TAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251948" ref_strand="+" ref_description="SGN-E251948 [cLEG-14-J15]">
      <seq>acgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgattaaatggtgccgcatgttatctacttatattattccttccttagcagctttctgaggatggcttcttccttataacatgttggtgtgtcgctgatacccattaattttggttccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135280" stop="133403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134980" g_stop="134950" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="185" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134107" g_stop="133703" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="590" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E251948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134980" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="133703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAAT</genome_strand>
        <mrna_strand>ACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208839" ref_strand="+" ref_description="SGN-E208839 [cLEC-51-K17]">
      <seq>agacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgagtgtggagggtcgtggcatggtgaagtacctctaggctgtgtttattgtgcttgcccttgttagggtaaatagcctgttggctctgctacacaaggatgggtgttcttctgagcttcgtatctggacagtggctaatcaaagtgccttgtgaatgtgggatcatttttgaaattagtttgagggcttctagtatgttatgctgatgatcagtcgtcattgatttaaatggtgccggaatgtacctacttatattattccttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135464" stop="133480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135164" g_stop="135108" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="123" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="277" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134107" g_stop="133780" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="606" r_length="329" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E208839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135164" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="133780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGA-TTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTT</genome_strand>
        <mrna_strand>AGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTTAAATGGTGCCGGAATGTACCTACTTATATTATTCCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204470" ref_strand="+" ref_description="SGN-E204470 [cLEC-24-G5]">
      <seq>agacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaatggttcaagaccagcgccgaatgaagatgaataagaaactgcagcagttaaaagctcccaaaaagaagaaactccaagccacaaaactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="135464" stop="133743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135164" g_stop="135108" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="123" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="277" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134107" g_stop="134043" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E204470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135164" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="134043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAG</genome_strand>
        <mrna_strand>AGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374209" ref_strand="+" ref_description="SGN-E374209 [TUS-33-H15]">
      <seq>ctcgtgccgaaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagcgctagagcaatggttcaagaccagcgccgaatgaagatgaatatgaaactgcagcagttaaaagctcccaaaaagaggaaactccaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136620" stop="133754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136330" g_stop="136276" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="184" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="247" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="325" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="417" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="483" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134835" g_stop="134682" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="637" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="134107" g_stop="134054" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="691" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E374209" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136330" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134682"/>
          <exon e_start="134107" e_stop="134054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAGGTGTGTACGTCTTGCTAAGTAAATTTGAATTTATATTATTTTCTTCATTTCACTCTCCTCCATTTTTTAGTTTCTTTGCACTAAAGATAAATAAGAATAAAAAGGATCTTGATGCCTTATTAATGAAGCTTCTTATTTTTTTAAAAAAGGAACAGAAGGGGGATGCTTTTTAGAAAAAGGCTCCTGACATCCTTATCAGAGGAGCCAGTAATAGCTTTTTGCCTATAAAATGAAGTGCTCAATTTGGTGCTTGTCTTGGAATCCCTCCTAACTTAGATACTCCTGTGAAATTCTTTAATTCAGGGGAAATGATGTAAATTATAATGCTGGAGTCTCTCCTAGTTGTGGTTTCAGTGAATAGATCTTGTTGTGCGTGGGACATGAGATTAATCATCCTCTGGTATTCTTAGTTTCAGTGAGTGGGTTTTATGGCGTGAGATGACCCTATATTTTTCTCCTACTGAGTACTAATTTTATCTCTGGAGTTTGATCTTGTTACGATGTTAGTGCCTTTGCTGCTATGTATTACGAATGATTCTGATCTAACACTGAAATATTGGTATTTTCATTGCAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCC</genome_strand>
        <mrna_strand>CTCGTGC-CGAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGCGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATATGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAGGAAACTCCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240301" ref_strand="+" ref_description="SGN-E240301 [cLED-25-A19]">
      <seq>gatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctagagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136234" stop="134408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135934" g_stop="135881" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="224" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134835" g_stop="134708" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="418" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E240301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135934" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAA</genome_strand>
        <mrna_strand>GATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305595" ref_strand="+" ref_description="SGN-E305595 [cLEX-14-I14]">
      <seq>ctcgtgccgaaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggattttgtggtgcgtccacagtctaagattgatcctgacgaagttagggccagggctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136620" stop="134413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136330" g_stop="136276" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="184" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="247" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="325" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="417" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="483" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134835" g_stop="134713" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="606" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E305595" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136330" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAG</genome_strand>
        <mrna_strand>CTCGTGC-CGAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213120" ref_strand="+" ref_description="SGN-E213120 [cLEC-72-E23]">
      <seq>aagcgacaatgaaccactgtctcccagcaatgctccacaggctgaagaaggggaagaggatgacgaaatcaagcagctcttcaagggaggcaagaagaaaaagaaaactgaaaagagtgcagcagaaattgcattgctagtagagaatgttatggctgagttggaagttgttgccgaggaggatgccgaactgaatagacattccaaacctgctataaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatgggatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggtcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137047" stop="134466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136747" g_stop="136708" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136496" g_stop="136276" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="261" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="391" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="454" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="532" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="624" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="690" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="134835" g_stop="134766" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="760" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E213120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136747" e_stop="136708"/>
          <exon e_start="136496" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAGGTAGAATTTTGGATACTTGTAGTTCCTTCCTGCTATATTTGCTTATCATAATTTCCCAACATTGCGGATGCTTTATGCACGGTGTTTTGTAAAAATCTACAGAAGAGTGCTGATTTTGAAGCTTTCTTGCTTTTATCTGGAATACATTAGACGCTTGTGAAGCCAATTGGTGGTATGGATGGTATATTTATTCTAATTTTATTCTTTTCAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTT</genome_strand>
        <mrna_strand>AAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG...................................................................................................................................................................................................................GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGGATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205433" ref_strand="+" ref_description="SGN-E205433 [cLEC-28-L17]">
      <seq>agatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagctgctcaatacaggcggcccttgaaaaaacccatgaataaagcatcaggaatggaatccagagacgatgaccttgacttggctggatattcacaagggcaaaaatctggcagtcatctggtaggcaacttacatcaaggcctgaagcaatgtcaatggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136482" stop="134466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136290" g_stop="136276" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="145" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="208" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="286" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135199" g_stop="135108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="378" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135015" g_stop="134950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="444" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134835" g_stop="134766" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="513" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E205433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136290" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135108"/>
          <exon e_start="135015" e_stop="134950"/>
          <exon e_start="134835" e_stop="134766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAGTATTGATTATTTTCAGTACTTCTACTGGTCCTCGTACCAGTTGTAGTCTGAATATTTACCATCCATAACTATATTTTCTATGTTGTCACAGACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACAGTAAGATGTTCTGACTTCACACCTTTTGATCCAAGTATCTTTGGATTGGGTGCTGTGAGTTGTCTGCTGCATCCTTATTTTTTCTCGTGGCTTAATATGCTTGCAAATTCGCAGAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTT</genome_strand>
        <mrna_strand>AGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA............................................................................................ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA..................................................................................................................AGGGCAAAAATCTGG-CAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253944" ref_strand="+" ref_description="SGN-E253944 [cLEG-28-L21]">
      <seq>gatgacgaaatcaagcagctcttcaagggaggcaagaagaaaaagaaaactgaaaagagtgcagcagaaattgcattgctagtagagaatgttatggctgagttggaagttgttgccgaggaggatgccgaactgaatagacattccaaacctgctataaataaactaaaaaaactccctcnttctcaatttttagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaacaggaaacttgccaaggatttggttgacaaatggagtcgaccaatattcaacaagagtacacggtttgaagacatgagaaatctagaggatgagagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136778" stop="134834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136478" g_stop="136276" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.73"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="339" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="402" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135796" g_stop="135719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="480" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135199" g_stop="135134" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="546" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E253944" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136478" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135719"/>
          <exon e_start="135199" e_stop="135134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTC-TTCTC-A----TAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGGTAAGATGGATTTAACTATTTATTAATTTCTTCTTTCCCTTTGTGAAAGGAATTATAAAAGGAGGGATTCTCTGTTGAGGGCCTGGGGCTTAGCTTTCTCCACGTCTTGGAGTGTTAATGATCTTTTGTCCGCTAAATTGCTGAGTTGGTTTCCAAGTTCATTACAGTATCTTGAGAATATATTAGGCAAACATCTTTCCAGCTTTAGCTTATTTTGTCATTCAGCTATATACTCTTCTGTTTTTCTGGGGAGGTGGGAGACTGCAACTCATGCTGTCTAGGTAACTATGTATTTGGTATTTCAATATAAAATGGGGTTATAGGATTTTATTTATTTTTGTATAGGTCCTATCTTTTTAATAGAATTATCCTTATATATGTATATTTACAATAGGGCATCTTAGTACTGGCAAATTTTTCACCGAAGAACATAAAACATTATTATCTGTATTTGGTTATTGCACAGAATAGATGCTTATCAACATGAAAAAGCTGACATTTGATTGTTTTTTTATTCAGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCT</genome_strand>
        <mrna_strand>GATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCNTTCTCAATTTTTAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390708" ref_strand="+" ref_description="SGN-E390708 [TUS-46-N6]">
      <seq>cctcttgccgaaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactacatctaatttgttatttgccaaggatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136620" stop="135453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136331" g_stop="136276" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="185" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135796" g_stop="135729" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="316" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E390708" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136331" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGT</genome_strand>
        <mrna_strand>CCTCTTGC-CGAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAATTTGTTATTTGCCAAGGATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337421" ref_strand="+" ref_description="SGN-E337421 [cTOE-18-M24]">
      <seq>gaaggtccaaagaatgccgatgatgataacttcattgatgatagtggtgtagatccagctgacaggtatggaagcgacaatgaaccactgtctcccagcaatgctccacaggctgaagaaggggaagaggatgacgaaatcaagcagctcttcaagggaggcaagaagaaaaagaaaactgaaaagagtgcagcagaaattgcattgctagtagagaatgttatggctgagttggaagttgttgccgaggaggatgccgaactgaatagacattccaaacctgctataaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgttgaaaaagagtggtcttggaaaggttattatgttcctctcgaaatcagatgaggagactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137118" stop="135459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136818" g_stop="136708" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136496" g_stop="136276" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="332" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="462" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="525" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135796" g_stop="135759" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="563" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E337421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136818" e_stop="136708"/>
          <exon e_start="136496" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAGGTAGAATTTTGGATACTTGTAGTTCCTTCCTGCTATATTTGCTTATCATAATTTCCCAACATTGCGGATGCTTTATGCACGGTGTTTTGTAAAAATCTACAGAAGAGTGCTGATTTTGAAGCTTTCTTGCTTTTATCTGGAATACATTAGACGCTTGTGAAGCCAATTGGTGGTATGGATGGTATATTTATTCTAATTTTATTCTTTTCAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTAC</genome_strand>
        <mrna_strand>GAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG...................................................................................................................................................................................................................GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG....................................................................................GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328098" ref_strand="+" ref_description="SGN-E328098 [cTOC-22-L7]">
      <seq>tctggaggaagcaggttaaaggaccaggagggggatcgggagatgaaggagatgtgggacaccattgctggtggtgactctgaggatgaccaagaaggtccaaagaatgccgatgatgataacttcattgatgatagtggtgtagatccagctgacaggtatggaagcgacaatgaaccactgtctcccagcaatgctccacaggctgaagaaggggaagaggatgacgaaatcaagcagctcttcaagggaggcaagaagaaaaagaaaactgaaaagagtgcagcagaaattgcattgctagtagagaatgttatggctgagttggaagttgttgccgaggaggatgccgaactgaatagacattccaaacctgctataaataaactaaaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatcttgagcagtatgatagaagagagatgtttgaaaagagtggtctggnaaagggtattatgttcctctcgaaatcagatgaggagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137469" stop="135460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137169" g_stop="137086" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137085" i_stop="136828" i_length="258">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136827" g_stop="136708" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="204" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136496" g_stop="136276" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="425" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="555" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135943" g_stop="135881" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="618" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84">
            <donor d_prob="0.616" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135796" g_stop="135760" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="655" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E328098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137169" e_stop="137086"/>
          <exon e_start="136827" e_stop="136708"/>
          <exon e_start="136496" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135881"/>
          <exon e_start="135796" e_stop="135760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAGGTTTGGCCAATTATCTCTGTTATCATCTTTCAAATAGTTTTGTAATTCTTCACGTATCACAAGAAACTCTTTTTCTTTTCCTTCTTTGGGGATACTGATTTGAATATGAGTTACTGAAATTTCCTTGTCAGGAAAAGCAAGTTTTACTAATGATGTTAGTTTAGTCTGTAGGAGCTAATAGAGTTGAGTGGATATCCAAATTGAAGGCAGTTTGGTTTTAATGACATGTTTTGTGATGGTCTTTGTTTTCAAATGTAGGATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAGGTAGAATTTTGGATACTTGTAGTTCCTTCCTGCTATATTTGCTTATCATAATTTCCCAACATTGCGGATGCTTTATGCACGGTGTTTTGTAAAAATCTACAGAAGAGTGCTGATTTTGAAGCTTTCTTGCTTTTATCTGGAATACATTAGACGCTTGTGAAGCCAATTGGTGGTATGGATGGTATATTTATTCTAATTTTATTCTTTTCAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTACCTTTCATGTAGAACTAGTAGCGTAATAGCTTCCAAGATGGAGGTACATGGGGGAGACTTATTGTTACTTACTTGATGTAGGTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTA</genome_strand>
        <mrna_strand>TCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAG..................................................................................................................................................................................................................................................................GATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG...................................................................................................................................................................................................................GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTTGAAAAGAGTGGTCTGGNAAAG....................................................................................GGTATTATGTTCCTCTCGAAATCAGATGAGGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256190" ref_strand="+" ref_description="SGN-E256190 [cLEG-37-G8]">
      <seq>aaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaagcctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="136610" stop="135744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136310" g_stop="136276" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="165" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135943" g_stop="135931" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="178" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E256190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136310" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAATTGATC</genome_strand>
        <mrna_strand>AAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702947" ref_strand="+" ref_description="SGN-E702947 [FA20AE11]">
      <seq>gatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggtggtccttcatcttcctctgctggtggtggaaagaggaagaggtttggcatggagtttagtgaagagaagaggaaggagaagaaggggagagagaaaggagagaagaaatttaagttgaggaaaaatgggggttactctggaggaagcaggttaaaggaccaggagggggatcgggagatgaaggagatgtgggacaccattgctggtggtgactctgaggatgaccaagaaggtccaaagaatgccgatgatgataacttcattgatgatagtggtgtagatccagctgacaggtatggaagcgacaatgaaccactgtctcccagcaatgctccacaggctgaagaaggggaagaggatgacgaaatcaagcagctcttcaagggaggcaagaagaaaaagaaaactgaaaagagtgcagcagaaattgcattgctagtagagaatgttatggctgagttggaagttgttgccgaggaggatgccgaactgaatagacattccaaacctgctataaataaactanaaaaactccctcttctcatagatgtcctgtctaagaagcaacttcagcaagaatttttagatcatggagtgttgactcttttgaggacttggcttgaaccccttccagatggaaacctgcccaacataaacattcgtgctgcgatcctaaagatccttactgattatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="137763" stop="135744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137463" g_stop="137086" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137085" i_stop="136828" i_length="258">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136827" g_stop="136708" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="498" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136496" g_stop="136276" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="719" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98">
            <donor d_prob="0.736" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136177" g_stop="136048" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="849" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135943" g_stop="135936" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="857" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E702947" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137463" e_stop="137086"/>
          <exon e_start="136827" e_stop="136708"/>
          <exon e_start="136496" e_stop="136276"/>
          <exon e_start="136177" e_stop="136048"/>
          <exon e_start="135943" e_stop="135936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAGGTTTGGCCAATTATCTCTGTTATCATCTTTCAAATAGTTTTGTAATTCTTCACGTATCACAAGAAACTCTTTTTCTTTTCCTTCTTTGGGGATACTGATTTGAATATGAGTTACTGAAATTTCCTTGTCAGGAAAAGCAAGTTTTACTAATGATGTTAGTTTAGTCTGTAGGAGCTAATAGAGTTGAGTGGATATCCAAATTGAAGGCAGTTTGGTTTTAATGACATGTTTTGTGATGGTCTTTGTTTTCAAATGTAGGATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAGGTAGAATTTTGGATACTTGTAGTTCCTTCCTGCTATATTTGCTTATCATAATTTCCCAACATTGCGGATGCTTTATGCACGGTGTTTTGTAAAAATCTACAGAAGAGTGCTGATTTTGAAGCTTTCTTGCTTTTATCTGGAATACATTAGACGCTTGTGAAGCCAATTGGTGGTATGGATGGTATATTTATTCTAATTTTATTCTTTTCAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGTGAGTGAGCTTGTCATTTATTTTCATGGCAGTAACTGAATTTTCTTTTTGGAGGCTAATAGATGTACATTGACACTTCCCAATTTCTCAATTTGCAGGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGATGTATGACCATGCTTTCTAGATTCGACTTAGTTGTTTATCTGTTTGCAACTTTGTATTTTGTGTTATCTGACTTGACACTTCTATGTTTCGTGATGATCCTGTAGTATCCAAT</genome_strand>
        <mrna_strand>GATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAG..................................................................................................................................................................................................................................................................GATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG...................................................................................................................................................................................................................GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTANAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA..................................................................................................GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAACCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT........................................................................................................TATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720181" ref_strand="+" ref_description="SGN-E720181 [FC10AC02]">
      <seq>aatcggccgaattatctaactatctttttccctctgcgccgttgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggtggtccttcatcttcctctgctggtggtggaaagaggaagaggtttggcatggagtttagtgaagagaagaggaaggagaagaaggggagagagaaaggagagaagaaatttaagttgaggaaaaatgggggttactctggaggaagcaggttaaaggaccaggagggggatcgggagatgaaggagatgtgggacaccattgctggtggtgactctgaggatgaccaagaaggtccaaagaatgccgatgatgataacttcattgatgatagtggtgtagatccagctgacaggtatggaagcgacaatgaaccactgtctcccagcaatgctccacaggctgaagaaggggaagaggatgacgaaatcaagcagctcttcaagggaggcaagaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138649" stop="136136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138349" g_stop="138288" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="75" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137086" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="604" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137085" i_stop="136828" i_length="258">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136827" g_stop="136708" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="724" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136496" g_stop="136436" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="785" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E720181" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138349" e_stop="138288"/>
          <exon e_start="137614" e_stop="137086"/>
          <exon e_start="136827" e_stop="136708"/>
          <exon e_start="136496" e_stop="136436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAGGTTTGGCCAATTATCTCTGTTATCATCTTTCAAATAGTTTTGTAATTCTTCACGTATCACAAGAAACTCTTTTTCTTTTCCTTCTTTGGGGATACTGATTTGAATATGAGTTACTGAAATTTCCTTGTCAGGAAAAGCAAGTTTTACTAATGATGTTAGTTTAGTCTGTAGGAGCTAATAGAGTTGAGTGGATATCCAAATTGAAGGCAGTTTGGTTTTAATGACATGTTTTGTGATGGTCTTTGTTTTCAAATGTAGGATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAGGTAGAATTTTGGATACTTGTAGTTCCTTCCTGCTATATTTGCTTATCATAATTTCCCAACATTGCGGATGCTTTATGCACGGTGTTTTGTAAAAATCTACAGAAGAGTGCTGATTTTGAAGCTTTCTTGCTTTTATCTGGAATACATTAGACGCTTGTGAAGCCAATTGGTGGTATGGATGGTATATTTATTCTAATTTTATTCTTTTCAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAA</genome_strand>
        <mrna_strand>ATCTAACTATCTTTTTCCCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAG..................................................................................................................................................................................................................................................................GATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG...................................................................................................................................................................................................................GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333608" ref_strand="+" ref_description="SGN-E333608 [cTOD-22-D3]">
      <seq>tgccttcacaagtagagtaaacaaagtccgaaaacctccatcgtttcatagcctatagaatttgattgagctacccctacttcacaaatcatctatatatataatctacttttccagacatacccatctaactatctttttctctctgcgccgttgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggtggtccttcatcttcctctgctggtggtggaaagaggaagagtttggcatggagtttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138774" stop="136943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138474" g_stop="138288" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137243" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="558" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E333608" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138474" e_stop="138288"/>
          <exon e_start="137614" e_stop="137243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGA</genome_strand>
        <mrna_strand>TGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGA-GTTTGGCATGGAGTTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314316" ref_strand="+" ref_description="SGN-E314316 [cTOA-21-M20]">
      <seq>cttcacaagtagagtaaacaaagtccgaaaacctccatcgtttcatagcctatagaatttgattgagctacccctacttcacaaatcatctatatatataatctacttttccagacatacccatctaactatctttttctctctgcgccgttgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggtggtccttcatcttcctctgctggtggtggaaagaggaagaggtttggcatggagtttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138771" stop="136943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138471" g_stop="138288" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137243" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="556" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E314316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138471" e_stop="138288"/>
          <exon e_start="137614" e_stop="137243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGA</genome_strand>
        <mrna_strand>CTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333889" ref_strand="+" ref_description="SGN-E333889 [cTOD-24-G4]">
      <seq>tgccttcacaagtagagtaaacaaagtccgaaaacctccatcgtttcatagcctatagaatttgattgagctacccctacttcacaaatcatctatatatataatctacttttccagacatacccatctaactatctttttctctctgcgccgttgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggtggtccttcatcttcctctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138774" stop="136983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138474" g_stop="138288" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137283" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="519" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E333889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138474" e_stop="138288"/>
          <exon e_start="137614" e_stop="137283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTG</genome_strand>
        <mrna_strand>TGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332983" ref_strand="+" ref_description="SGN-E332983 [cTOD-19-D12]">
      <seq>aaaacctccatcgtttcatagcctatagaatttgattgagctacccctacttcacaaatcatctatatatataatctacttttccagacatacccatctaactatctttttctctctgcgccgttgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcggggggccttcatcttcctctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138744" stop="136983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138444" g_stop="138288" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137283" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="489" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E332983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138444" e_stop="138288"/>
          <exon e_start="137614" e_stop="137283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTG</genome_strand>
        <mrna_strand>AAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGGGGGCCTTCATCTTCCTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202146" ref_strand="+" ref_description="SGN-E202146 [cLEC-7-I14]">
      <seq>agcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgtccgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcggtcaccgaccccagtatatgatgatcttaacaagtctaagcccaggaagcggttaattaagaaatcttcagctagagaaaacacaccggatattgggctaggagatgaggaggatgcttatggtggtgctgctgctgatgacatgactggcaatatgcatgatgagtttgacggcgggggtccttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138617" stop="136995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138317" g_stop="138288" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137295" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="350" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E202146" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138317" e_stop="138288"/>
          <exon e_start="137614" e_stop="137295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCAT</genome_strand>
        <mrna_strand>AGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGGGGTCCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289964" ref_strand="+" ref_description="SGN-E289964 [cLET-9-B16]">
      <seq>acaagtgtaggtatatctggtgacaataaataaggcaatcacaaaatgaagttagaaatttgaccgcgttgattgctgccttcacaagtagagtaaacagagtccgaaaacctccatcggttcatagcctatagaatttgattgagctacccctacttcacaaatcatctatatatataatctacttttccagacatacccatctaactatctttttctctctgcgccgctgtagcgttcaagatgagttacaacaacgatccgtacatagatgaggatggagaggcattggtggattttgatgaggatgttcgatcagataacgagcaacaggaacaatttcttggtgacaatctggacgatgatgatgcatggaatcagagacagcgagagcgggcaccgaccccagtatatgatgatcttaacaagtctaagccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="-" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138850" stop="137139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138550" g_stop="138288" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137614" g_stop="137439" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="439" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="-" ref_id="SGN-E289964" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138550" e_stop="138288"/>
          <exon e_start="137614" e_stop="137439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTGTAGGCATATCTGGTCACAATAAATAAGGCAATCACAAAATGAAGTTAGAAATTTGACCGCGTTGATTGCTGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTAAGTTTTTGCTTTTATTTTCCGCGAGAAGTTAAAGGGTTACGTTTCGATTGTTTTGATTTTGATTTAATGTTTGTAGTTGTGTTGTTTTTGGTGGATTTGGGTGTTTTTTTGGATGACCCTTTTGGTGATGAGATGAATTGGAGTTTCTGATGATGAAATTGATCGGGATTTTGGGGATTTTTGGTTGGTTTGGGTTGTTTTTGGATGACCCATTTTTGTGATAAGTCGAGTTTGGTTTTGTGGTTGATGAATTGATCTAGATTTGTGTTGTTTATTTCTCGACAGGTTGTTTTCTGGATGACCCGTTTCGATGATGAGTTGAATTAGGGTTCTGATGACGATTTGATCAGAAAGTTTGTGGCTTTTTGTGTTGCTTTTGTGTCGATTTTGGATGACGCCTTTTGGTGTGTTGAGTTGAATTAGGGTTTCCAATAATGAATTCGTTGAGATTTCTTATGGATCTTTTTTTTGGGGGCGTCTGCTCCTTTCTTTTGATCCATTTTGAACAACAGCAAAAGTTATGGTTACTAATGAAGATTTTGTCTGGAATTTTTTTGTATATTCCGTGATTTTCTGTGGGTCTGTGTTGTTTGGGATTTTGATCCTTTTTGGGGATGAGCTGAAATTGGATTTCAGATGGTGTATTGATTGGAATTTTTTCATCTTCCAGGTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCA</genome_strand>
        <mrna_strand>ACAAGTGTAGGTATATCTGGTGACAATAAATAAGGCAATCACAAAATGAAGTTAGAAATTTGACCGCGTTGATTGCTGCCTTCACAAGTAGAGTAAACAGAGTCCGAAAACCTCCATCGGTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGCTGTAGCGTTCAAGATGAGTTACAACAACGATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTTCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGGCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272134" ref_strand="+" ref_description="SGN-E272134 [cLEN-4-A3]">
      <seq>ctgctttactttgctttgttttctccgctctgcgctttgataattttttttttttaatcaatgaaggatatctattatcgtgaggaagccaattagattatatctgttagtttagcattgtgcaaaaggtaagaatttgttgacttgacaccgactttatggagaaaattgacttgtacagcaatcgccgtgcagtgcagaaggcggttttgcattttcttcaatatgatgtagcttcccggaaatttatcacagatggtttttactattagtatttagcctttttttggtacttgtaaatagatagttatatctgtagataaaatggaaccaaagggggttggatttttagatagtggccgtaggactgtggttggagaaaagagtaaagtggttactcagaatttggcacatctgcttagagccagcagtgagaaaatatcaattcaatccaactgtgatagaaagctagagaagaggaaaaggatcgttcactgcgagtctaatagtcaatcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="144475" stop="146959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144775" g_stop="144856" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144857" i_stop="145822" i_length="966">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.393" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145823" g_stop="145946" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="206" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145947" i_stop="146345" i_length="399">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146346" g_stop="146659" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="520" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E272134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144775" e_stop="144856"/>
          <exon e_start="145823" e_stop="145946"/>
          <exon e_start="146346" e_stop="146659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTACTTTGCTTTGTTTTCTCCGCTCTGCGCTTTGATAATTTTTTTTTTTTAATCAATGAAGGATATCTATTATCGTGGTAAGAATCCCTTGTTCATGTTTTTTTCTTGTAAAAGTTTAGGGATCTGAATTTATCTGTTTCGATTTGCTTTATTCTGGAAATGTTGTGAGCTGAATTTGATTTTCTGGGAGTATTTGCTTGCATTTTAGTTTTTTCTGGGATTAATTTTGCGATTTAATTGAGTTTAGTTGCTTGTTTATGACTGATTTCCTATTTGGGTGGTACCTTTTTTTGCTTTTTCTATATGGTGGTGTTATTAGACTGGGAGCATTTTAAGATGTTGAATTTTGATTTCTTTATTATACTAGTGATTTGAAAGTTAGGGTTTGGTTGAGAAAGTAATAATCGAGGTTAAAAAAATTGAATTGTAGGTGGTTTATCTGTGGAAGATCTTTTCCTAACCTACATTTTTGTAATAATTTAAATTCGTGAATTTTTTTTTTGAAGTAGTTTTGAAATGGGAATGAGTTCAAACCCTAGGGAGTATTTTTCAAATGTTTTTTGAGGATTAAGCAGTATTAAAAAGAACTACTACTTCTTTAATGTTAAAGGCTTATAGTTGGAAACAATTGCCAACTTTACTTATGAATTTTTTAAGTTACAATTATTTTGGGACAATTTTTTTGAGTTAAACGACAGGTAAAATGGGAGAGAGGAAGGGGAGTGTGTATGCATTGGAGAGTTCTAAGCAAGGATGTCTTTCGCATTAGAATAATATGATAGGATGAAGGGATGGATGGATTGGGATAGAGAAAAATCTTCTCTCTTTGAGAAGAGAAATGGTGGACTATGACGTGGGATCAATATATTTAGGAGAATACTGATGGAGGAGGACATTGACCTCTCTTCTTTTTTTAAAAAAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTTTTGATTTGGAAACTGACAAAATTTACATTTCAGAGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCGGTCAGTATCTCAAACTAACCTATGTTCTGCGCACACTTTCTTTCTCCGCTTAGGATAAAATATATCTTTGTTTTCAAAAATGGTAAATGGTTTGTGACTTCAGTTGGATGCATTTCAATGTTTTATCTTCTCACCTTTCCTGTGGTCAAGTATACGTTTGTGTTAGAAACTTAGACCAATAAGCTATTCAAGTCACTTGGCATCGGTTGCTTTAGTAGTATGTATGGACTTCTATATTTCTACGGAATGCCTTTGTTCAATTTGTCAAGTATCTGCTTTCTAAAAAAAATTAAAGCTGGACAAAGCCCTTTAAGTTGCAGTCAACTGATATATTCATGAAGATGCTGTTATTGTTTCCTATTTTGACTGATTGACTTCCTATTTGTTTTTCTTTGCTAGGTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGTTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTAGATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATAGAAAGCTTGAGAAGAGGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATC</genome_strand>
        <mrna_strand>CTGCTTTACTTTGCTTTGTTTTCTCCGCTCTGCGCTTTGATAATTTTTTTTTTTTAATCAATGAAGGATATCTATTATCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGTTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTAGATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATAGAAAGCTAGAGAAGAGGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329345" ref_strand="+" ref_description="SGN-E329345 [cTOD-2-L18]">
      <seq>tgggatcaatatatttaggagaatactgatggaggaggacattgacctctcttctttttttaaaaaaaaaaattgttgtttcttttccaattatgtattgcattgtagtgcagaagtttgaattcagacatttatttatgaattatgcatttgcttttgatttggaaactgacaaaatttacatttcagaggaagccaattagattatatctgttagtttagcattgtgcaaaaggtaagaatttgttgacttgacaccgactttatggagaaaattgacttgtacagcaatcgccgtgcagtgcagaaggcggtcagtatctcaaactaacctatgttctgcgcacactttctttctccgcttaggataaaatatatctttgttttcaaaaatggtaaatggtttgtgacttcagttggatgcatttcaatgttttatcttctcacctttcctgtggtcaagtatacgtttgtgttagaaacttagaccaataagctattcaagtcacttggcatcggttgctttagtagtatgtatggacttctatatttctacggaatgcctttgttcaatttgtcaagtatctgctttctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="145334" stop="146534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145634" g_stop="146234" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E329345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145634" e_stop="146234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCAATATATTTAGGAGAATACTGATGGAGGAGGACATTGACCTCTCTTCTTTTTTTAAAAAAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTTTTGATTTGGAAACTGACAAAATTTACATTTCAGAGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCGGTCAGTATCTCAAACTAACCTATGTTCTGCGCACACTTTCTTTCTCCGCTTAGGATAAAATATATCTTTGTTTTCAAAAATGGTAAATGGTTTGTGACTTCAGTTGGATGCATTTCAATGTTTTATCTTCTCACCTTTCCTGTGGTCAAGTATACGTTTGTGTTAGAAACTTAGACCAATAAGCTATTCAAGTCACTTGGCATCGGTTGCTTTAGTAGTATGTATGGACTTCTATATTTCTACGGAATGCCTTTGTTCAATTTGTCAAGTATCTGCTTTCTAAAAAAA</genome_strand>
        <mrna_strand>TGGGATCAATATATTTAGGAGAATACTGATGGAGGAGGACATTGACCTCTCTTCTTTTTTTAAAAAAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTTTTGATTTGGAAACTGACAAAATTTACATTTCAGAGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCGGTCAGTATCTCAAACTAACCTATGTTCTGCGCACACTTTCTTTCTCCGCTTAGGATAAAATATATCTTTGTTTTCAAAAATGGTAAATGGTTTGTGACTTCAGTTGGATGCATTTCAATGTTTTATCTTCTCACCTTTCCTGTGGTCAAGTATACGTTTGTGTTAGAAACTTAGACCAATAAGCTATTCAAGTCACTTGGCATCGGTTGCTTTAGTAGTATGTATGGACTTCTATATTTCTACGGAATGCCTTTGTTCAATTTGTCAAGTATCTGCTTTCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329269" ref_strand="+" ref_description="SGN-E329269 [cTOD-2-L20]">
      <seq>aaaaccaaaaaattgttgtttcttttccaattatgtattgcattgtagtgcagaagtttgaattcagacatttatttatgaattatgcatttgctattgatttggaaactgacaaaatttacatttcacaggaagccaattagattatatctgttagtttaacattgtgcaaaaaggaagaatttgatgacttgacacctactttatggagaaaattgacttgtgcagcaatcgccgtgcagttcaaaatgatgtcagtatcttaaactaacatatgttatgagcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="145395" stop="146282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145694" g_stop="145982" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E329269" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145694" e_stop="145982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTTTTGATTTGGAAACTGACAAAATTTACATTTCAGAGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCGGTCAGTATCTCAAACTAACCTATGTTCTGCGCACAC</genome_strand>
        <mrna_strand>AAAACCAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTATTGATTTGGAAACTGACAAAATTTACATTTCACAGGAAGCCAATTAGATTATATCTGTTAGTTTAACATTGTGCAAAAAGGAAGAATTTGATGACTTGACACCTACTTTATGGAGAAAATTGACTTGTGCAGCAATCGCCGTGCAGTTCAAAATGATGTCAGTATCTTAAACTAACATATGTTATGAGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248807" ref_strand="+" ref_description="SGN-E248807 [cLEG-5-M16]">
      <seq>gaagatgctgttattgtttcctattttgactgattgacttcctatttgtttttggttgctaggttttgcattttcttcaatatgatgtagcttcccggaaatttatcacagatgggttttactattagtatttagcctttttttggtacttgtaaatagatagttatatctgtagataaaatggaaccaaagggggttggatttttacatagtggccgtaggactgtggttggagaaaagagtaaagtggttactcagaatttggcacatctgcttagagccagcagtgagaaaatatcaattcaatccaactgtgattgaaagcttgaaaagaggaaaaggatcgttcactgggagtctaatagtcaatcacatctcaggatatatgaacacaagaactacctgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="145984" stop="146994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146284" g_stop="146694" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E248807" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146284" e_stop="146694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCTGTTATTGTTTCCTATTTTGACTGATTGACTTCCTATTTGTTTTTCTTTGCTAGGTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGTTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTAGATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATAGAAAGCTTGAGAAGAGGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTT</genome_strand>
        <mrna_strand>GAAGATGCTGTTATTGTTTCCTATTTTGACTGATTGACTTCCTATTTGTTTTTGGTTGCTAGGTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGGTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTACATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATTGAAAGCTTGAAAAGAGGAAAAGGATCGTTCACTGGGAGTCTAATAGTCAATCACATCTCAGGATATATGAACACAAGAACTACCTGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333337" ref_strand="+" ref_description="SGN-E333337 [cTOD-20-H22]">
      <seq>ggaaaaggatcgttcactgcgagtctaatagtcaatcacatctcaggatatctgaacacaagaactacctgaactttaagagaagcagactgccgctacgtgtactgttttatcagaacggtgaatggaccgacttccctcaagatattattcctatagttaaagaagattttcgggcgaaaaagactgttattgaggtgaaagtttgtgactttcatataattcttgatattctacatatggttcaaatagatgtaataaatggtttacagaaacctattgcctggatagatgaagtaggtaggtgtttcttccctgagtcttatcttatcagtagtgaaatgcttgggaattttgaaaccctgtcaaagagaactgaagagtttatgacaactgagccagataggataactgatatgaagttgcaactcgacactgacttaaatggactggataatcgcaatttggaagaagatgtggaagagtcaaatattggttacaagaggaataaagtatgtcctcttaaagacagtcaagaagttgctgattataaaaaatcagatgcaaaaattgcacaagttgcagaaaataaacagaaccaagaaacaccgtctcctgacttagaangctagcctgaatttgtgaatgcagaatctgtcaaaaatatgtttattatgggaatgaatgttaacccctaacaagtgtgagatcaaaattaacaaatgctcctagtaattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="146318" stop="147656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146618" g_stop="147357" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E333337" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146618" e_stop="147357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTGCACAAGTTGCAGAAAATAAACAGAACCAAGAAACACCGTCTCCTGACTTAGAA-GCTAGCCTGAAATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAA-CCCTAACAAGTGTGAGATCAAAATTAACAAATGCT-CTAGTAATTATTTG</genome_strand>
        <mrna_strand>GGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTGCACAAGTTGCAGAAAATAAACAGAACCAAGAAACACCGTCTCCTGACTTAGAANGCTAGCCTG-AATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAACCCCTAACAAGTGTGAGATCAAAATTAACAAATGCTCCTAGTAATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333935" ref_strand="+" ref_description="SGN-E333935 [cTOD-24-F7]">
      <seq>ggaaaaggatcgttcactgcgagtctaatagtcaatcacatctcaggatatctgaacacaagaactacctgaactttaagagaagcagactgccgctacgtgtactgttttatcagaacggtgaatggaccgacttccctcaagatattattcctatagttaaagaagattttcgggcgaaaaagactgttattgaggtgaaagtttgtgactttcatataattcttgatattctacatatggttcaaatagatgtaataaatggtttacagaaacctattgcctggatagatgaagtaggtaggtgtttcttccctgagtcttatcttatcagtagtgaaatgcttgggaattttgaaaccctgtcaaagagaactgaagagtttatgacaactgagccagataggataactgatatgaagttgcaactcgacactgacttaaatggactggataatcgcaatttggaagaagatgtggaagagtcaaatattggttacaagaggaataaagtatgtcctcttaaagacagtcaagaagttgctgattataaaaaatcagatgcaaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="146318" stop="147490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146618" g_stop="147190" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E333935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146618" e_stop="147190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTG</genome_strand>
        <mrna_strand>GGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249690" ref_strand="+" ref_description="SGN-E249690 [cLEF-56-P23]">
      <seq>tagcctgaaatttgtgaatgcagaatctgtcaaaaatatgtttattatgggaatgaatgttaaccctaacaagtgtgagatcaaaattaacaaatgctctagtaattatttgacaactcgcttagaactctttgagaagcaggttgaaataacgcaaaaatatcgtggaaactcaaatgttcgatatgcatggcttgccgcttctaaagatttgatatctacaattatgaagtacggccttgcacctggaggatctaagtataggcctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="146946" stop="147816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147246" g_stop="147516" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E249690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147246" e_stop="147516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCTGAAATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAACCCTAACAAGTGTGAGATCAAAATTAACAAATGCTCTAGTAATTATTTGACAACTCGCTTAGAACTCTTTGAGAAGCAGGTTGAAATAACGCAAAAATATCGTGGAAACTCAAATGTTCGATATGCATGGCTTGCCGCTTCTAAAGATTTGATATCTACAATTATGAAGTACGGCCTTGCACCTGGAGGATCTAAGTATAGGCCTAAA</genome_strand>
        <mrna_strand>TAGCCTGAAATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAACCCTAACAAGTGTGAGATCAAAATTAACAAATGCTCTAGTAATTATTTGACAACTCGCTTAGAACTCTTTGAGAAGCAGGTTGAAATAACGCAAAAATATCGTGGAAACTCAAATGTTCGATATGCATGGCTTGCCGCTTCTAAAGATTTGATATCTACAATTATGAAGTACGGCCTTGCACCTGGAGGATCTAAGTATAGGCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738691" ref_strand="+" ref_description="SGN-E738691 [LC14CE08]">
      <seq>gcgatgctgatgaaaatggcgtacattacatggtttttgctcgtgtgattttgggtaatatggaacctttacactgcggatctgaacaatggcatcccagtgatgaaaaatatgatagtggagttgatgatctcgagaatcctactcattatgttatttggaatatgaatttgaacacacatatatacccagtgtgtgttgtgagcttcagaattcctccaggagctgaaggaccccgcgttggaaatgatagtcggattgatgtctcaggtgtcaatacttgtcctcggggccctgtggaacaggtacccacaaatacatttccgaaggacttgggaagtttagctacaatattgtacacttaggttgttggggggattttattatatgatcttcattaaactataagatgggggagttgtgagagacagtgttggacatgcaacaaaatcgatttttgaaataaatttaggattttgaaaatttttaaagaaatcaagcacaataggcaaagaagaggaacatgaagttcactaattcgaaaggccatgtcttgagtttctttggcaaaatgagtgaacatcaaaagaactgtaagttactttatatgctttgacatgtttgttgcgcttatatttattgtgtcgatttatcttcttgatcaatggttgagttacttcctcagatgcatgctagttatctaggaaaacattgatgccataggcacttgataaagtactctctagaagattgtttgatattatttaacgggtttgcaacaaataatctgcatccactactgaaaaggcatagtaattgctcttgcacatgctttaacaccggtattcttcatctgccgcacaagtaacatttctgttttacatgtcctacaagaaacatgtctgttttgcagccttgctgggattgtatctgttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147647" stop="149991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147947" g_stop="148177" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148178" i_stop="148982" i_length="805">
            <donor d_prob="0.242" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148983" g_stop="149691" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="940" r_length="709" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E738691" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147947" e_stop="148177"/>
          <exon e_start="148983" e_stop="149691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGCTGATGAAAATGGCGTACATTACATGGTTTTTGCTCGTGTGATTTTGGGTAATATGGAACCTTTACACTGCGGATCTGAACAATGGCATCCCAGTGATGAAAAATATGATAGTGGAGTTGATGATCTCGAGAATCCTACTCATTATGTTATTTGGAATATGAATTTGAACACACATATATACCCAGTGTGTGTTGTGAGCTTCAGAATTCCTCCAGGAGCTGAAGGTAATCTCCACTTTGTTCCTATATTGAAGGATTAGGATGACACCATCCGTACTGGTCTTATAACTCTTTAACAATTTTTGTTTGAAACTGTTGTTAGTGTCTATAGCCATGGAGCCTGCTTCACATTACTCTCTCTTTACATGCCGTGCCATTCCCACGTCTCTTTCCTTGTAATGGAAACTTCACCCTTATTCATTAAACTTTTCAGAAGTATCATATTCACTTTTATCTTTGTGAAAGTCAAATGCCAGAAAAAAAGTACAGTATCTTAACTCTACTCTGAGCCCTAGTTTTCCTCATAACCAAATTCTTCTCAATGAATTTTTGGAGTTAAAATTGAATTTCAAGTTAGTTAGTATTTTGGAAATAAGATTTAGTTATTTAGTAAGTGTGTCGAAAGTATACAAGCAACATTTGTGTCATATCAAAGTAACAAGAAGTATTTATGCGTTAGTGAAGGATTATTCATTTGACTGGGAAGTGAAATAGGAGAACCAATTTTGGTTTAGACACGGTATATGATATACTCTTATTTTTCCAATTTATGATCAATTATAGTATATTTCCTTTGAGACATCTGCTTTCTGGAAAAACTTTGAATATAAGAATTATGCGGTGAAATTCTCAATGTTCTCTAGATCTGTGAAATAAATGAAGTGGCAAGTTTGTTGCTGATTTCAGATTCCTTTTGTTCATTTTCTCTTTTATTTTTATTTTTAGCATTTTAAAAATTGCGGAAAACTTTAAATATTTTTCATTGAAAAATCATGCAGCACTTGAATTAACGCTTCCACGCTTTTTACAGGACCCCGCGTTGGAAATGATAGTCGGATTGATGTCTCAGGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCACAAGTAACATTTCTGTTTTACATGTCCTACAAGAAACATGTCTGTTTTGCAGCCTTGCTGGAATTGTATCTGTTCATCA</genome_strand>
        <mrna_strand>GCGATGCTGATGAAAATGGCGTACATTACATGGTTTTTGCTCGTGTGATTTTGGGTAATATGGAACCTTTACACTGCGGATCTGAACAATGGCATCCCAGTGATGAAAAATATGATAGTGGAGTTGATGATCTCGAGAATCCTACTCATTATGTTATTTGGAATATGAATTTGAACACACATATATACCCAGTGTGTGTTGTGAGCTTCAGAATTCCTCCAGGAGCTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCCGCGTTGGAAATGATAGTCGGATTGATGTCTCAGGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCACAAGTAACATTTCTGTTTTACATGTCCTACAAGAAACATGTCTGTTTTGCAGCCTTGCTGGGATTGTATCTGTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736701" ref_strand="+" ref_description="SGN-E736701 [LC06DD04]">
      <seq>gcgatgctgatgaaaatggcgtacattacatggtttttgctcgtgtgattttgggtaatatggaacctttacactgcggatctgaacaatggcatcccagtgatgaaaaatatgatagtggagttgatgatctcgagaatcctactcattatgttatttggaatatgaatttgaacacacatatatacccagtgtgtgttgtgagcttcagaattcctccaggagctgaaggaccccgcgttggaaatgatagtcggattgatgtctcaggtgtcaatacttgtcctcggggccctgtggaacaggtacccacaaatacatttccgaaggacttgggaagtttagctacaatattgtacacttaggttgttggggggattttattatatgatcttcattaaactataagatgggggagttgtgagagacagtgttggacatgcaacaaaatcgatttttgaaataaatttaggattttgaaaatttttaaagaaatcaagcacaataggcaaagaagaggaacatgaagttcactaattcgaaaggccatgtcttgagtttctttggcaaaatgagtgaacatcaaaagaactgtaagttactttatatgctttgacatgtttgttgcgcttatatttattgtgtcgatttatcttcttgatcaatggttgagttacttcctcagatgcatgctagttatctaggaaaacattgatgccataggcacttgataaagtactctctagaagattgtttgatattatttaacgggtttgcaacaaataatctgcatcccctactgaaaaggcatagtaattgctcttgcacatgctttaacaccggtattcttcatctgccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147647" stop="149912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147947" g_stop="148177" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148178" i_stop="148982" i_length="805">
            <donor d_prob="0.242" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148983" g_stop="149612" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="861" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E736701" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147947" e_stop="148177"/>
          <exon e_start="148983" e_stop="149612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGCTGATGAAAATGGCGTACATTACATGGTTTTTGCTCGTGTGATTTTGGGTAATATGGAACCTTTACACTGCGGATCTGAACAATGGCATCCCAGTGATGAAAAATATGATAGTGGAGTTGATGATCTCGAGAATCCTACTCATTATGTTATTTGGAATATGAATTTGAACACACATATATACCCAGTGTGTGTTGTGAGCTTCAGAATTCCTCCAGGAGCTGAAGGTAATCTCCACTTTGTTCCTATATTGAAGGATTAGGATGACACCATCCGTACTGGTCTTATAACTCTTTAACAATTTTTGTTTGAAACTGTTGTTAGTGTCTATAGCCATGGAGCCTGCTTCACATTACTCTCTCTTTACATGCCGTGCCATTCCCACGTCTCTTTCCTTGTAATGGAAACTTCACCCTTATTCATTAAACTTTTCAGAAGTATCATATTCACTTTTATCTTTGTGAAAGTCAAATGCCAGAAAAAAAGTACAGTATCTTAACTCTACTCTGAGCCCTAGTTTTCCTCATAACCAAATTCTTCTCAATGAATTTTTGGAGTTAAAATTGAATTTCAAGTTAGTTAGTATTTTGGAAATAAGATTTAGTTATTTAGTAAGTGTGTCGAAAGTATACAAGCAACATTTGTGTCATATCAAAGTAACAAGAAGTATTTATGCGTTAGTGAAGGATTATTCATTTGACTGGGAAGTGAAATAGGAGAACCAATTTTGGTTTAGACACGGTATATGATATACTCTTATTTTTCCAATTTATGATCAATTATAGTATATTTCCTTTGAGACATCTGCTTTCTGGAAAAACTTTGAATATAAGAATTATGCGGTGAAATTCTCAATGTTCTCTAGATCTGTGAAATAAATGAAGTGGCAAGTTTGTTGCTGATTTCAGATTCCTTTTGTTCATTTTCTCTTTTATTTTTATTTTTAGCATTTTAAAAATTGCGGAAAACTTTAAATATTTTTCATTGAAAAATCATGCAGCACTTGAATTAACGCTTCCACGCTTTTTACAGGACCCCGCGTTGGAAATGATAGTCGGATTGATGTCTCAGGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCA</genome_strand>
        <mrna_strand>GCGATGCTGATGAAAATGGCGTACATTACATGGTTTTTGCTCGTGTGATTTTGGGTAATATGGAACCTTTACACTGCGGATCTGAACAATGGCATCCCAGTGATGAAAAATATGATAGTGGAGTTGATGATCTCGAGAATCCTACTCATTATGTTATTTGGAATATGAATTTGAACACACATATATACCCAGTGTGTGTTGTGAGCTTCAGAATTCCTCCAGGAGCTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCCGCGTTGGAAATGATAGTCGGATTGATGTCTCAGGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCCCTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691337" ref_strand="+" ref_description="SGN-E691337 [LH_Ea05N15]">
      <seq>cgttcaatacttgtcctcggggccctgtggaacagggaagtcatcgttttcaaatatcactagttaagttggccctggaagaggctgcgaggattccaaagtccagtggggtgccattctccttgttgattgatgcaatctccaatgtagtaaatgccgagaaaatgaaccatgttactagaagttatgagttgcttgggttcaagaagatatgtagggatgaatttgagaaacggttggttgcaatcgtaggccttactctgttgaagtccacaacgaaaagtttgctgtgcaagatacaatcaaaacccattgaaatggttcagccaaagcaagagccacaaagtgctgacttcaaaggaaatactgccctattccattggctagagccacagaccgagtaactgtgtttatgtggaacaccttctctctgttgtagtgagatcgtttagatggttggatttcctttcctactgtaatgtgatagtaaaagcatctgttcttttgtcctagaatatggattcgtgaagtagttagtttcttttatttgaactggttaaaaacggtttagtttcagctactctttgaagtgaatgcttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="148722" stop="151098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149021" g_stop="149056" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149057" i_stop="149740" i_length="684">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149741" g_stop="149905" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="200" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149906" i_stop="150015" i_length="110">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150016" g_stop="150111" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="296" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150112" i_stop="150493" i_length="382">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="150494" g_stop="150806" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="612" r_length="316" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E691337" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149021" e_stop="149056"/>
          <exon e_start="149741" e_stop="149905"/>
          <exon e_start="150016" e_stop="150111"/>
          <exon e_start="150494" e_stop="150806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCACAAGTAACATTTCTGTTTTACATGTCCTACAAGAAACATGTCTGTTTTGCAGCCTTGCTGGAATTGTATCTGTTCATCAATTAACTGCAGATCTTTTTAGGTGACAGTTTTTGTGTTTTCATCTTTAGGGAAGTCATCGTTTTCAAGTATCACTAGTTAAGTTGGCCCTGGAAGAGGCTGCGAGGATTCCAAAGTCCAGTGGGGTGCCATTCTCCTTGTTGATTGATGCAATCTCCAATGTAGTAAATGCCGAGAAAATGAACCATGTTACTAGAAGTTATGAGTTGCTTGGGGTTTGTATATATACAGAATCTTTTCCTCTCATTTTACACCTGAATTTTGTATTTCATCTTGTTGTTCTAATGATTTTCTTCTCTTATGGTTTCTTCTCCGACATTGATAGTTCAAGAAGATATGTAGGGATGAATTTGAGAAACGGTTGGTTGCAATCGTAGGCCTTACTCTGTTGAAGTCCACAACGAAAAGTTTGCTGTGCAAGGTATGTCCTGTGCCTTGTATCTTGAGAATTTGTGAAGTTACATGTCAAGTGACCTCTTGTCTAAATTAAAAGCTGCCTTATATTTATAAGCTGGCTTATATTTATTTTTTAAAGTAAAAATGGATATAAGGGTATTTGCACTATTTTAGATATTCTAATAAATGCATTTTCTCACTCTATATTTTATCCCTCCGCATTAATTAATTACATATTGCATGAGTTACTTACAAGGGCATGAAATTGGTATCCAGTTACCTTGGTTTATGCCGAGATCATCTTTTCTTCTTTGCAAAGTCAAATGAGCCGAAGTGTTCCTTCTTTTACTTTTTTTTAATCTTATCTTATTGTTTGTTTACTTCTTTGTTTTGTTTCTCTTTGGCAGATACAATCAAAACCCATTGAAATGGTTCAGCCAAAGCAAGAGCCACAAAGTGCTGACTTCAAAGGAAATACTGCCCTATTCCATTGGATAGAGCCACAGACCGAGTAACTGTGTTTATGTGGAACACCTTCTCTCTGTTGTAGTGAGATCGTTTAGATGGTTGGATTTCCTTTTCTACTGGAATGTGATAGT---AGCATCTGTTCTTTTGTCCTAGAATATGGATTCGTGAAGTAGTTAGTTTCTTTTATTTGAACTGGTTAAAAACAGTTTAGTTTCAGCTACTCTTTGAAGTGAATGCTTATGAAGTTTATAT</genome_strand>
        <mrna_strand>CGT-TCAATACTTGTCCTCGGGGCCCTGTGGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCATCGTTTTCAAATATCACTAGTTAAGTTGGCCCTGGAAGAGGCTGCGAGGATTCCAAAGTCCAGTGGGGTGCCATTCTCCTTGTTGATTGATGCAATCTCCAATGTAGTAAATGCCGAGAAAATGAACCATGTTACTAGAAGTTATGAGTTGCTTGGG..............................................................................................................TTCAAGAAGATATGTAGGGATGAATTTGAGAAACGGTTGGTTGCAATCGTAGGCCTTACTCTGTTGAAGTCCACAACGAAAAGTTTGCTGTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................ATACAATCAAAACCCATTGAAATGGTTCAGCCAAAGCAAGAGCCACAAAGTGCTGACTTCAAAGGAAATACTGCCCTATTCCATTGGCTAGAGCCACAGACCGAGTAACTGTGTTTATGTGGAACACCTTCTCTCTGTTGTAGTGAGATCGTTTAGATGGTTGGATTTCCTTTCCTACTGTAATGTGATAGTAAAAGCATCTGTTCTTTTGTCCTAGAATATGGATTCGTGAAGTAGTTAGTTTCTTTTATTTGAACTGGTTAAAAACGGTTTAGTTTCAGCTACTCTTTGAAGTGAATGCTTATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695177" ref_strand="+" ref_description="SGN-E695177 [LH_Ea05N15](-)">
      <seq>gtcaatacttgtcctcggggccctgtggaacagggaagtcatcgttttcaaatatcactagttaagttggccctggaagaggctgcgaggattccaaagtccagtggggtgccattctccttgttgattgatgcaatctccaatgtagtaaatgccgagaaaatgaaccatgttactagaagttatgagttgcttgggttcaagaagatatgtagggatgaatttgagaaacggttggttgcaatcgtaggccttactctgttgaagtccacaacgaaaagtttgctgtgcaagatacaatcaaaacccattgaaatggttcagccaaagcaagagccacaaagtgctgacttcaaaggaaatactgccctattccattggctagagccacagaccgagtaactgtgtttatgtggaacaccttctctctgttgtagtgagatcgtttagatggttggatttcctttcctactgtaatgtgatagtaaaagcatctgttcttttgtcctagaatatggattcgtgaagtagttagtttcttttatttgaactggttaaaaacggatatggtttcagctactctttgaagtgaatgcttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0042L06-fdGwD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0042L06.1" temp_strand="+" temp_description="C06HBa0042L06.1  AC232856.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0042L06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="148724" stop="151098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149024" g_stop="149056" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149057" i_stop="149740" i_length="684">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149741" g_stop="149905" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149906" i_stop="150015" i_length="110">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150016" g_stop="150111" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="294" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150112" i_stop="150493" i_length="382">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="150494" g_stop="150798" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="603" r_length="309" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="617"/>
      <MATCH_line gen_id="C06HBa0042L06.1" gen_strand="+" ref_id="SGN-E695177" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0042L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149024" e_stop="149056"/>
          <exon e_start="149741" e_stop="149905"/>
          <exon e_start="150016" e_stop="150111"/>
          <exon e_start="150494" e_stop="150798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCACAAGTAACATTTCTGTTTTACATGTCCTACAAGAAACATGTCTGTTTTGCAGCCTTGCTGGAATTGTATCTGTTCATCAATTAACTGCAGATCTTTTTAGGTGACAGTTTTTGTGTTTTCATCTTTAGGGAAGTCATCGTTTTCAAGTATCACTAGTTAAGTTGGCCCTGGAAGAGGCTGCGAGGATTCCAAAGTCCAGTGGGGTGCCATTCTCCTTGTTGATTGATGCAATCTCCAATGTAGTAAATGCCGAGAAAATGAACCATGTTACTAGAAGTTATGAGTTGCTTGGGGTTTGTATATATACAGAATCTTTTCCTCTCATTTTACACCTGAATTTTGTATTTCATCTTGTTGTTCTAATGATTTTCTTCTCTTATGGTTTCTTCTCCGACATTGATAGTTCAAGAAGATATGTAGGGATGAATTTGAGAAACGGTTGGTTGCAATCGTAGGCCTTACTCTGTTGAAGTCCACAACGAAAAGTTTGCTGTGCAAGGTATGTCCTGTGCCTTGTATCTTGAGAATTTGTGAAGTTACATGTCAAGTGACCTCTTGTCTAAATTAAAAGCTGCCTTATATTTATAAGCTGGCTTATATTTATTTTTTAAAGTAAAAATGGATATAAGGGTATTTGCACTATTTTAGATATTCTAATAAATGCATTTTCTCACTCTATATTTTATCCCTCCGCATTAATTAATTACATATTGCATGAGTTACTTACAAGGGCATGAAATTGGTATCCAGTTACCTTGGTTTATGCCGAGATCATCTTTTCTTCTTTGCAAAGTCAAATGAGCCGAAGTGTTCCTTCTTTTACTTTTTTTTAATCTTATCTTATTGTTTGTTTACTTCTTTGTTTTGTTTCTCTTTGGCAGATACAATCAAAACCCATTGAAATGGTTCAGCCAAAGCAAGAGCCACAAAGTGCTGACTTCAAAGGAAATACTGCCCTATTCCATTGGATAGAGCCACAGACCGAGTAACTGTGTTTATGTGGAACACCTTCTCTCTGTTGTAGTGAGATCGTTTAGATGGTTGGATTTCCTTTTCTACTGGAATGTGATAGT---AGCATCTGTTCTTTTGTCCTAGAATATGGATTCGTGAAGTAGTTAGTTTCTTTTATTTGAACTGGTTAAAAACAG-TTTAGTTTCAGCTACTCTTTGAAGTGAATGCTTATGAA</genome_strand>
        <mrna_strand>GTCAATACTTGTCCTCGGGGCCCTGTGGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCATCGTTTTCAAATATCACTAGTTAAGTTGGCCCTGGAAGAGGCTGCGAGGATTCCAAAGTCCAGTGGGGTGCCATTCTCCTTGTTGATTGATGCAATCTCCAATGTAGTAAATGCCGAGAAAATGAACCATGTTACTAGAAGTTATGAGTTGCTTGGG..............................................................................................................TTCAAGAAGATATGTAGGGATGAATTTGAGAAACGGTTGGTTGCAATCGTAGGCCTTACTCTGTTGAAGTCCACAACGAAAAGTTTGCTGTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................ATACAATCAAAACCCATTGAAATGGTTCAGCCAAAGCAAGAGCCACAAAGTGCTGACTTCAAAGGAAATACTGCCCTATTCCATTGGCTAGAGCCACAGACCGAGTAACTGTGTTTATGTGGAACACCTTCTCTCTGTTGTAGTGAGATCGTTTAGATGGTTGGATTTCCTTTCCTACTGTAATGTGATAGTAAAAGCATCTGTTCTTTTGTCCTAGAATATGGATTCGTGAAGTAGTTAGTTTCTTTTATTTGAACTGGTTAAAAACGGATATGGTTTCAGCTACTCTTTGAAGTGAATGCTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>92</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="24255" PGL_stop="22466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24255" e_stop="24158"/>
            <exon e_start="23697" e_stop="23621"/>
            <exon e_start="23532" e_stop="23469"/>
            <exon e_start="23293" e_stop="23218"/>
            <exon e_start="23093" e_stop="23024"/>
            <exon e_start="22859" e_stop="22823"/>
            <exon e_start="22748" e_stop="22466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.543" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24255" e_stop="24158" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24157" i_stop="23698" i_length="460"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23697" e_stop="23621" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23620" i_stop="23533" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23532" e_stop="23469" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.991">
            <gDNA_intron_boundary i_start="23468" i_stop="23294" i_length="175"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23293" e_stop="23218" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.543" acc_prob="0.871">
            <gDNA_intron_boundary i_start="23217" i_stop="23094" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23093" e_stop="23024" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.683">
            <gDNA_intron_boundary i_start="23023" i_stop="22860" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22859" e_stop="22823" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22822" i_stop="22749" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="22748" e_stop="22466" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24255" stop="24158"/>
              <exon start="23697" stop="23621"/>
              <exon start="23532" stop="23469"/>
              <exon start="23293" stop="23218"/>
              <exon start="23093" stop="23024"/>
              <exon start="22859" stop="22823"/>
              <exon start="22748" stop="22466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24255" stop="24158"/>
              <exon start="23697" stop="23621"/>
              <exon start="23532" stop="23469"/>
              <exon start="23293" stop="23218"/>
              <exon start="23093" stop="23024"/>
              <exon start="22859" stop="22823"/>
              <exon start="22748" stop="22469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24254" stop="24158"/>
              <exon start="23697" stop="23621"/>
              <exon start="23532" stop="23469"/>
              <exon start="23293" stop="23218"/>
              <exon start="23093" stop="23024"/>
              <exon start="22859" stop="22823"/>
              <exon start="22748" stop="22568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATTCATTTGTAGTTCCAAAATTACTTCTCTCAGACTTACAATAGTAATGAACTGTTGTTCTGATCCGATTCGAGTTGATTCATTTTAAGTTTT : AAGCAACTCCCAAATTAGTACTGAGGTTAATGGGCTTGAAGGGTTTGACACTATACCATTTGAAGAGTCATTTGCAG : AAGTATAGACTTGGACAGCTGGCGAAGAAACAAAATGCAGCCGAGGCAAACAAAGAGAACAGCG : GGGACTCCTCTGGACAGTTTGGTTTGCATTCCTCAGGCCCCAGTACCTCTTCATTAAGTATGAACTTTATGCAAGG : AGAGGTCCCAACCACGGAGGCAGTAATGTCTCAGATTCAAGTTCAGAAAATATTACAGGAGCAGCTTCAG : GTGCAACAGAAACTGCAAATGCGAATAGAAGCACAAG : GAAGCAACAACCTCTCATCTCCCTGCTTTCGATTCACCTCTGTCAAATTTAATGGATTATGGAGAGAACCGGGACTACAACATAGAGCTACCAACGTCTAGTTACATCGTGGAGAAAGAACAAAAGAAGGATATGAATCTTTATAAGCTCAAAGAAGATTCCATTAATTTCGATTTGAACTCCAGAAGTAGCTATATATGATTTTTGTCAATAATTGTTCTGTTCACACAAGATTATTACATAGTACATTATTTGCTGAATTTTTCATTCATTGAAAAAACAC</gDNA_template>
            <first_frame> T  E  F  I  C  S  S  K  I  T  S  L  R  L  T  I  V  M  N  C  C  S  D  P  I  R  V  D  S  F  *  V  L :   S  N  S  Q  I  S  T  E  V  N  G  L  E  G  F  D  T  I  P  F  E  E  S  F  A   : E  V  *  T  W  T  A  G  E  E  T  K  C  S  R  G  K  Q  R  E  Q  R :   G  L  L  W  T  V  W  F  A  F  L  R  P  Q  Y  L  F  I  K  Y  E  L  Y  A  R  :  R  G  P  N  H  G  G  S  N  V  S  D  S  S  S  E  N  I  T  G  A  A  S   : G  A  T  E  T  A  N  A  N  R  S  T  R :   K  Q  Q  P  L  I  S  L  L  S  I  H  L  C  Q  I  *  W  I  M  E  R  T  G  T  T  T  *  S  Y  Q  R  L  V  T  S  W  R  K  N  K  R  R  I  *  I  F  I  S  S  K  K  I  P  L  I  S  I  *  T  P  E  V  A  I  Y  D  F  C  Q  *  L  F  C  S  H  K  I  I  T  *  Y  I  I  C  *  I  F  H  S  L  K  K  H </first_frame>
            <second_frame>  L  N  S  F  V  V  P  K  L  L  L  S  D  L  Q  *  *  *  T  V  V  L  I  R  F  E  L  I  H  F  K  F   : *  A  T  P  K  L  V  L  R  L  M  G  L  K  G  L  T  L  Y  H  L  K  S  H  L  Q  :  K  Y  R  L  G  Q  L  A  K  K  Q  N  A  A  E  A  N  K  E  N  S   : G  D  S  S  G  Q  F  G  L  H  S  S  G  P  S  T  S  S  L  S  M  N  F  M  Q  G :   E  V  P  T  T  E  A  V  M  S  Q  I  Q  V  Q  K  I  L  Q  E  Q  L  Q  :  V  Q  Q  K  L  Q  M  R  I  E  A  Q   : G  S  N  N  L  S  S  P  C  F  R  F  T  S  V  K  F  N  G  L  W  R  E  P  G  L  Q  H  R  A  T  N  V  *  L  H  R  G  E  R  T  K  E  G  Y  E  S  L  *  A  Q  R  R  F  H  *  F  R  F  E  L  Q  K  *  L  Y  M  I  F  V  N  N  C  S  V  H  T  R  L  L  H  S  T  L  F  A  E  F  F  I  H  *  K  N   </second_frame>
            <third_frame>   *  I  H  L  *  F  Q  N  Y  F  S  Q  T  Y  N  S  N  E  L  L  F  *  S  D  S  S  *  F  I  L  S  F  :  K  Q  L  P  N  *  Y  *  G  *  W  A  *  R  V  *  H  Y  T  I  *  R  V  I  C  R :   S  I  D  L  D  S  W  R  R  N  K  M  Q  P  R  Q  T  K  R  T  A  :  G  T  P  L  D  S  L  V  C  I  P  Q  A  P  V  P  L  H  *  V  *  T  L  C  K   : E  R  S  Q  P  R  R  Q  *  C  L  R  F  K  F  R  K  Y  Y  R  S  S  F  R :   C  N  R  N  C  K  C  E  *  K  H  K  :  E  A  T  T  S  H  L  P  A  F  D  S  P  L  S  N  L  M  D  Y  G  E  N  R  D  Y  N  I  E  L  P  T  S  S  Y  I  V  E  K  E  Q  K  K  D  M  N  L  Y  K  L  K  E  D  S  I  N  F  D  L  N  S  R  S  S  Y  I  *  F  L  S  I  I  V  L  F  T  Q  D  Y  Y  I  V  H  Y  L  L  N  F  S  F  I  E  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23695" stop="23621"/>
                    <exon start="23532" stop="23469"/>
                    <exon start="23293" stop="23218"/>
                    <exon start="23093" stop="23024"/>
                    <exon start="22859" stop="22823"/>
                    <exon start="22748" stop="22648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATPKLVLRLMGLKGLTLYHLKSHLQKYRLGQLAKKQNAAEANKENSGDSSGQFGLHSSGPSTSSLSMNFMQGEVPTTEAVMSQIQVQKILQEQLQVQQKLQMRIEAQGSNNLSSPCFRFTSVKFNGLWREPGLQHRATNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32564" PGL_stop="38884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32564" e_stop="32859"/>
            <exon e_start="33250" e_stop="33362"/>
            <exon e_start="33442" e_stop="33526"/>
            <exon e_start="38383" e_stop="38884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32564" e_stop="32859" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32860" i_stop="33249" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33250" e_stop="33362" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.986">
            <gDNA_intron_boundary i_start="33363" i_stop="33441" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33442" e_stop="33526" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33527" i_stop="38382" i_length="4856"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38383" e_stop="38884" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32578" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32579" stop="32859"/>
              <exon start="33250" stop="33357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32581" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32581" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32585" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32612" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32612" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32612" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32644" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32645" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32645" stop="32859"/>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33250" stop="33362"/>
              <exon start="33442" stop="33526"/>
              <exon start="38383" stop="38884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38383" stop="38879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATGGTGTGTCGTCTCTCCTGTTGGCTCTTACAATCGAAAGCAAAAAAACCTAAGTCCCAAATAGAGAGCAAAGATGCAGAGATGGTGCTCTAAGCTCCGGTCCCTCGCCGCTCTCCGTTCAACTCCAAATGCCCATCACTACCCTCTTACTCCTCATCGTCTTCTCCACACTGCTACCAATCCCATTATTAACAAACCCTTCACACAGTCAATACTCTCTCCCACCTTTAAACCCCTTTGCCATGGTGGCCCTGTTTCGTTCCCCACTCACTCGTCTCTCCTCCCTCTTTCT : TTCATGCAAGTGCGGTACATCACTGCAAAACAGAGGAAAAGGAAGTTGAAAAGCAGGAAGCCCATGACTCCAATCACATCAAAAGTCAAGAAAATCAAAATGAAATTTTATTC : GTCTTACAAGGACAGATTTCGTGTGATGAAGGATGGCCAGATTAGGCGCTGGAAGGAGGGGAAGAGACATAATGCACATTTAAAG : TCTAAGAAATCAAAACGTCGGCTCAGGCAACCTGCTACGGTCCCTTTGGCTTATGCAAAAGTGATGAAGAAGCTCAGTTTCTGTTGAAGCATTTTTAGTTTGATGCTCTTACTGCCACTCTCACTTGAGTGGCGTTTCTTCTGGTCTTGTTGGTTATCCTCTCGAATCAGTGCAGTGTAGAAGATTTTTTTCAAGGCAAACATATAACATGTTCTGTTCAGGTCTTTTGTGACAAAGCTGCTGTTAGTCTATTTCTTTGGCAAATGGGTATGGAGTTTGATAGTTCTTGTAAGAACAAATAAAAATACAAGAGATGATCTAAGGAGAAAGGTGCAAGGACAAAAAAATTTGTATCAGGTATCCAAGTGAAGAAACAGTCAAGTTCTTTCTTATGAATTAACTTATCTTTATCAAGTCATATGATCTTAATTTGAACCAATCATTTTACTTCTTTTTAGTGATTTGTCAGGAAATGAGATGAATAAACTAGTTTGATTATGTG</gDNA_template>
            <first_frame> N  D  G  V  S  S  L  L  L  A  L  T  I  E  S  K  K  T  *  V  P  N  R  E  Q  R  C  R  D  G  A  L  S  S  G  P  S  P  L  S  V  Q  L  Q  M  P  I  T  T  L  L  L  L  I  V  F  S  T  L  L  P  I  P  L  L  T  N  P  S  H  S  Q  Y  S  L  P  P  L  N  P  F  A  M  V  A  L  F  R  S  P  L  T  R  L  S  S  L  F  L :   S  C  K  C  G  T  S  L  Q  N  R  G  K  G  S  *  K  A  G  S  P  *  L  Q  S  H  Q  K  S  R  K  S  K  *  N  F  I   : R  L  T  R  T  D  F  V  *  *  R  M  A  R  L  G  A  G  R  R  G  R  D  I  M  H  I  *  S :   L  R  N  Q  N  V  G  S  G  N  L  L  R  S  L  W  L  M  Q  K  *  *  R  S  S  V  S  V  E  A  F  L  V  *  C  S  Y  C  H  S  H  L  S  G  V  S  S  G  L  V  G  Y  P  L  E  S  V  Q  C  R  R  F  F  S  R  Q  T  Y  N  M  F  C  S  G  L  L  *  Q  S  C  C  *  S  I  S  L  A  N  G  Y  G  V  *  *  F  L  *  E  Q  I  K  I  Q  E  M  I  *  G  E  R  C  K  D  K  K  I  C  I  R  Y  P  S  E  E  T  V  K  F  F  L  M  N  *  L  I  F  I  K  S  Y  D  L  N  L  N  Q  S  F  Y  F  F  L  V  I  C  Q  E  M  R  *  I  N  *  F  D  Y  V </first_frame>
            <second_frame>  M  M  V  C  R  L  S  C  W  L  L  Q  S  K  A  K  K  P  K  S  Q  I  E  S  K  D  A  E  M  V  L  *  A  P  V  P  R  R  S  P  F  N  S  K  C  P  S  L  P  S  Y  S  S  S  S  S  P  H  C  Y  Q  S  H  Y  *  Q  T  L  H  T  V  N  T  L  S  H  L  *  T  P  L  P  W  W  P  C  F  V  P  H  S  L  V  S  P  P  S  F   : F  H  A  S  A  V  H  H  C  K  T  E  E  K  E  V  E  K  Q  E  A  H  D  S  N  H  I  K  S  Q  E  N  Q  N  E  I  L  F  :  V  L  Q  G  Q  I  S  C  D  E  G  W  P  D  *  A  L  E  G  G  E  E  T  *  C  T  F  K   : V  *  E  I  K  T  S  A  Q  A  T  C  Y  G  P  F  G  L  C  K  S  D  E  E  A  Q  F  L  L  K  H  F  *  F  D  A  L  T  A  T  L  T  *  V  A  F  L  L  V  L  L  V  I  L  S  N  Q  C  S  V  E  D  F  F  Q  G  K  H  I  T  C  S  V  Q  V  F  C  D  K  A  A  V  S  L  F  L  W  Q  M  G  M  E  F  D  S  S  C  K  N  K  *  K  Y  K  R  *  S  K  E  K  G  A  R  T  K  K  F  V  S  G  I  Q  V  K  K  Q  S  S  S  F  L  *  I  N  L  S  L  S  S  H  M  I  L  I  *  T  N  H  F  T  S  F  *  *  F  V  R  K  *  D  E  *  T  S  L  I  M   </second_frame>
            <third_frame>   *  W  C  V  V  S  P  V  G  S  Y  N  R  K  Q  K  N  L  S  P  K  *  R  A  K  M  Q  R  W  C  S  K  L  R  S  L  A  A  L  R  S  T  P  N  A  H  H  Y  P  L  T  P  H  R  L  L  H  T  A  T  N  P  I  I  N  K  P  F  T  Q  S  I  L  S  P  T  F  K  P  L  C  H  G  G  P  V  S  F  P  T  H  S  S  L  L  P  L  S  :  F  M  Q  V  R  Y  I  T  A  K  Q  R  K  R  K  L  K  S  R  K  P  M  T  P  I  T  S  K  V  K  K  I  K  M  K  F  Y  S :   S  Y  K  D  R  F  R  V  M  K  D  G  Q  I  R  R  W  K  E  G  K  R  H  N  A  H  L  K  :  S  K  K  S  K  R  R  L  R  Q  P  A  T  V  P  L  A  Y  A  K  V  M  K  K  L  S  F  C  *  S  I  F  S  L  M  L  L  L  P  L  S  L  E  W  R  F  F  W  S  C  W  L  S  S  R  I  S  A  V  *  K  I  F  F  K  A  N  I  *  H  V  L  F  R  S  F  V  T  K  L  L  L  V  Y  F  F  G  K  W  V  W  S  L  I  V  L  V  R  T  N  K  N  T  R  D  D  L  R  R  K  V  Q  G  Q  K  N  L  Y  Q  V  S  K  *  R  N  S  Q  V  L  S  Y  E  L  T  Y  L  Y  Q  V  I  *  S  *  F  E  P  I  I  L  L  L  F  S  D  L  S  G  N  E  M  N  K  L  V  *  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32632" stop="32859"/>
                    <exon start="33250" stop="33362"/>
                    <exon start="33442" stop="33526"/>
                    <exon start="38383" stop="38469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKMQRWCSKLRSLAALRSTPNAHHYPLTPHRLLHTATNPIINKPFTQSILSPTFKPLCHGGPVSFPTHSSLLPLSFMQVRYITAKQRKRKLKSRKPMTPITSKVKKIKMKFYSSYKDRFRVMKDGQIRRWKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLSFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="62726" PGL_stop="63304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62726" e_stop="63304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62726" e_stop="63304" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62726" stop="63304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62784" stop="63244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAATCAGGTTCTTGGATGTGACTACAGACGACTTGTACAATTATGAGGGATTGCGACAAAGAAGAAAAAATGCAAAAATAAAGAAGGAAAAAAAATATGGAAATTAAAGAAATAAAGAAGGAAAGAAATAAAGAAGTTAAATTCAAGTCAAATAAGGAAAGAAAAAAAAGGTTACAATTCAAGTCAAATAAGGAAAGAAATAAATATAGACAATTTCAAGAAGGAAAATGATTTGTAATTCCTTTAGTTCCTTGTAGAAGTTGATGAAGGCCAATCAAACTCTATAAAAGGTTTAAGAAGTTGAAGAAAAAAATGTCTTTGCAATAACATAAATCGAGAGAATTTTTCCAGTAAAACAAGAACGATAGCTATTGCAATTCACGAAATATATCTTCGTGAAAGCAATAGTTACTGGAGAAAAGTTGCAGAGCTTCGTCACAGCTTGGTCACAACAACGTAAGGACCAAGATCACGAGTTATGTTCCACTCTGAACTATTGAATATTGAAGTCTGATCAATTAAATTATAGGGTTATTAGTCTCTGTTGATTTGTTCTAGATTTATTATTGAGTTGAAA</gDNA_template>
            <first_frame> V  N  Q  V  L  G  C  D  Y  R  R  L  V  Q  L  *  G  I  A  T  K  K  K  K  C  K  N  K  E  G  K  K  I  W  K  L  K  K  *  R  R  K  E  I  K  K  L  N  S  S  Q  I  R  K  E  K  K  G  Y  N  S  S  Q  I  R  K  E  I  N  I  D  N  F  K  K  E  N  D  L  *  F  L  *  F  L  V  E  V  D  E  G  Q  S  N  S  I  K  G  L  R  S  *  R  K  K  C  L  C  N  N  I  N  R  E  N  F  S  S  K  T  R  T  I  A  I  A  I  H  E  I  Y  L  R  E  S  N  S  Y  W  R  K  V  A  E  L  R  H  S  L  V  T  T  T  *  G  P  R  S  R  V  M  F  H  S  E  L  L  N  I  E  V  *  S  I  K  L  *  G  Y  *  S  L  L  I  C  S  R  F  I  I  E  L  K </first_frame>
            <second_frame>  *  I  R  F  L  D  V  T  T  D  D  L  Y  N  Y  E  G  L  R  Q  R  R  K  N  A  K  I  K  K  E  K  K  Y  G  N  *  R  N  K  E  G  K  K  *  R  S  *  I  Q  V  K  *  G  K  K  K  K  V  T  I  Q  V  K  *  G  K  K  *  I  *  T  I  S  R  R  K  M  I  C  N  S  F  S  S  L  *  K  L  M  K  A  N  Q  T  L  *  K  V  *  E  V  E  E  K  N  V  F  A  I  T  *  I  E  R  I  F  P  V  K  Q  E  R  *  L  L  Q  F  T  K  Y  I  F  V  K  A  I  V  T  G  E  K  L  Q  S  F  V  T  A  W  S  Q  Q  R  K  D  Q  D  H  E  L  C  S  T  L  N  Y  *  I  L  K  S  D  Q  L  N  Y  R  V  I  S  L  C  *  F  V  L  D  L  L  L  S  *   </second_frame>
            <third_frame>   E  S  G  S  W  M  *  L  Q  T  T  C  T  I  M  R  D  C  D  K  E  E  K  M  Q  K  *  R  R  K  K  N  M  E  I  K  E  I  K  K  E  R  N  K  E  V  K  F  K  S  N  K  E  R  K  K  R  L  Q  F  K  S  N  K  E  R  N  K  Y  R  Q  F  Q  E  G  K  *  F  V  I  P  L  V  P  C  R  S  *  *  R  P  I  K  L  Y  K  R  F  K  K  L  K  K  K  M  S  L  Q  *  H  K  S  R  E  F  F  Q  *  N  K  N  D  S  Y  C  N  S  R  N  I  S  S  *  K  Q  *  L  L  E  K  S  C  R  A  S  S  Q  L  G  H  N  N  V  R  T  K  I  T  S  Y  V  P  L  *  T  I  E  Y  *  S  L  I  N  *  I  I  G  L  L  V  S  V  D  L  F  *  I  Y  Y  *  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0042L06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="73232" PGL_stop="72715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73232" e_stop="72715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="73232" e_stop="72715" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73232" stop="72715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCATCATTCTTGTAGCTCATCAAATTAAATCAATGGATATGAATTTAGTTTCATTTATCCTCTTGTTCTCATTCCTTTTTATTATTTTTCGAAAATTGAGAAGAAGCCAAAAACAAAACTTGCCTCCAGGTCCATGGAGACTCCCACTCATTGGGAGTTTGCATCATTTAATTAGTGGACATAATCCACATCGTATTTTTAGAGACCTAGCTCGAAAATACGGCCCCGTAATGTACTTAGAACTCGGAGAAGTTCCTACCGTCATCATATCATCTCCTTCTACGTCCAAACAAGTTTTAAAAACTCATGATCTCGCCTTTGCTAGTAGGCCACAATTTACATCCACTGATATTGTCATGTACAATAATAAAGATATTGCGTTTGCAGAATATGGTGACTACTGGAAACAAATGCGTAAGATTTGCATAATGGAACTTTTAAGTGCCAAGATGGTCAAGTCATTTAGCTCAATTCGTAAGGATGAGCTCTCTAGTGTTCTCTCGTCAATTGATTCT</gDNA_template>
            <first_frame> F  S  S  F  L  *  L  I  K  L  N  Q  W  I  *  I  *  F  H  L  S  S  C  S  H  S  F  L  L  F  F  E  N  *  E  E  A  K  N  K  T  C  L  Q  V  H  G  D  S  H  S  L  G  V  C  I  I  *  L  V  D  I  I  H  I  V  F  L  E  T  *  L  E  N  T  A  P  *  C  T  *  N  S  E  K  F  L  P  S  S  Y  H  L  L  L  R  P  N  K  F  *  K  L  M  I  S  P  L  L  V  G  H  N  L  H  P  L  I  L  S  C  T  I  I  K  I  L  R  L  Q  N  M  V  T  T  G  N  K  C  V  R  F  A  *  W  N  F  *  V  P  R  W  S  S  H  L  A  Q  F  V  R  M  S  S  L  V  F  S  R  Q  L  I   </first_frame>
            <second_frame>  F  H  H  S  C  S  S  S  N  *  I  N  G  Y  E  F  S  F  I  Y  P  L  V  L  I  P  F  Y  Y  F  S  K  I  E  K  K  P  K  T  K  L  A  S  R  S  M  E  T  P  T  H  W  E  F  A  S  F  N  *  W  T  *  S  T  S  Y  F  *  R  P  S  S  K  I  R  P  R  N  V  L  R  T  R  R  S  S  Y  R  H  H  I  I  S  F  Y  V  Q  T  S  F  K  N  S  *  S  R  L  C  *  *  A  T  I  Y  I  H  *  Y  C  H  V  Q  *  *  R  Y  C  V  C  R  I  W  *  L  L  E  T  N  A  *  D  L  H  N  G  T  F  K  C  Q  D  G  Q  V  I  *  L  N  S  *  G  *  A  L  *  C  S  L  V  N  *  F  </second_frame>
            <third_frame>   F  I  I  L  V  A  H  Q  I  K  S  M  D  M  N  L  V  S  F  I  L  L  F  S  F  L  F  I  I  F  R  K  L  R  R  S  Q  K  Q  N  L  P  P  G  P  W  R  L  P  L  I  G  S  L  H  H  L  I  S  G  H  N  P  H  R  I  F  R  D  L  A  R  K  Y  G  P  V  M  Y  L  E  L  G  E  V  P  T  V  I  I  S  S  P  S  T  S  K  Q  V  L  K  T  H  D  L  A  F  A  S  R  P  Q  F  T  S  T  D  I  V  M  Y  N  N  K  D  I  A  F  A  E  Y  G  D  Y  W  K  Q  M  R  K  I  C  I  M  E  L  L  S  A  K  M  V  K  S  F  S  S  I  R  K  D  E  L  S  S  V  L  S  S  I  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73230" stop="72715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIILVAHQIKSMDMNLVSFILLFSFLFIIFRKLRRSQKQNLPPGPWRLPLIGSLHHLISGHNPHRIFRDLARKYGPVMYLELGEVPTVIISSPSTSKQVLKTHDLAFASRPQFTSTDIVMYNNKDIAFAEYGDYWKQMRKICIMELLSAKMVKSFSSIRKDELSSVLSSIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="91416" PGL_stop="92006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91416" e_stop="92006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="91416" e_stop="92006" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91416" stop="92006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91609" stop="92006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCACTGAGTTTGTATATCGAAGAATTAGTTCTGTTAAGTTGACAAGACGAGTACCATTAGTGGATCGGATTGATGAGAGGAGTCTCGTAATCTCATCTTTCCGAATTGAACTAAATGACTTGACCGTTTTGGTACCTAATAACTCCGTGACACAAATATTACGCATTTGTCTCCATTTATCACCGTATGGTGCAAATGCAATGTCCTTGTAATTATAAGTAGTGATGTCTATGGATGTAAGTTGTGGCTTAGTGGCAAAGGCGAGTTCATGAGTTTTTAGTATTTCTTTCACCATAATAGGGGATGATACGATCACAGCAGGAATTTCTCCGAGTTGTAAATACATAATCGGACCATATTTTGTTGCTAAATTTTTTAGGGTACGATGTGGAAATGATAGTGCACCTCTCAAGTGATGAAGACTACCAATAATGGGAAGTCTCCATGGACCTGGAGGCAATTTTTCTTTTGCCGTTGATGATTTTCTAAGTAATTGAGTAAACAAAAAGGGAAAGAATATAAGTAGTAGTGCAACAAGGTTGTAAGAAGAGGAATAAATGACCTCCATATTTTTTACTAAAATAAGAAAG</gDNA_template>
            <first_frame> V  T  E  F  V  Y  R  R  I  S  S  V  K  L  T  R  R  V  P  L  V  D  R  I  D  E  R  S  L  V  I  S  S  F  R  I  E  L  N  D  L  T  V  L  V  P  N  N  S  V  T  Q  I  L  R  I  C  L  H  L  S  P  Y  G  A  N  A  M  S  L  *  L  *  V  V  M  S  M  D  V  S  C  G  L  V  A  K  A  S  S  *  V  F  S  I  S  F  T  I  I  G  D  D  T  I  T  A  G  I  S  P  S  C  K  Y  I  I  G  P  Y  F  V  A  K  F  F  R  V  R  C  G  N  D  S  A  P  L  K  *  *  R  L  P  I  M  G  S  L  H  G  P  G  G  N  F  S  F  A  V  D  D  F  L  S  N  *  V  N  K  K  G  K  N  I  S  S  S  A  T  R  L  *  E  E  E  *  M  T  S  I  F  F  T  K  I  R  K </first_frame>
            <second_frame>  S  L  S  L  Y  I  E  E  L  V  L  L  S  *  Q  D  E  Y  H  *  W  I  G  L  M  R  G  V  S  *  S  H  L  S  E  L  N  *  M  T  *  P  F  W  Y  L  I  T  P  *  H  K  Y  Y  A  F  V  S  I  Y  H  R  M  V  Q  M  Q  C  P  C  N  Y  K  *  *  C  L  W  M  *  V  V  A  *  W  Q  R  R  V  H  E  F  L  V  F  L  S  P  *  *  G  M  I  R  S  Q  Q  E  F  L  R  V  V  N  T  *  S  D  H  I  L  L  L  N  F  L  G  Y  D  V  E  M  I  V  H  L  S  S  D  E  D  Y  Q  *  W  E  V  S  M  D  L  E  A  I  F  L  L  P  L  M  I  F  *  V  I  E  *  T  K  R  E  R  I  *  V  V  V  Q  Q  G  C  K  K  R  N  K  *  P  P  Y  F  L  L  K  *  E   </second_frame>
            <third_frame>   H  *  V  C  I  S  K  N  *  F  C  *  V  D  K  T  S  T  I  S  G  S  D  *  *  E  E  S  R  N  L  I  F  P  N  *  T  K  *  L  D  R  F  G  T  *  *  L  R  D  T  N  I  T  H  L  S  P  F  I  T  V  W  C  K  C  N  V  L  V  I  I  S  S  D  V  Y  G  C  K  L  W  L  S  G  K  G  E  F  M  S  F  *  Y  F  F  H  H  N  R  G  *  Y  D  H  S  R  N  F  S  E  L  *  I  H  N  R  T  I  F  C  C  *  I  F  *  G  T  M  W  K  *  *  C  T  S  Q  V  M  K  T  T  N  N  G  K  S  P  W  T  W  R  Q  F  F  F  C  R  *  *  F  S  K  *  L  S  K  Q  K  G  K  E  Y  K  *  *  C  N  K  V  V  R  R  G  I  N  D  L  H  I  F  Y  *  N  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91416" stop="91628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTEFVYRRISSVKLTRRVPLVDRIDERSLVISSFRIELNDLTVLVPNNSVTQILRICLHLSPYGANAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="103786" PGL_stop="104462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103786" e_stop="104462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="103786" e_stop="104462" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103786" stop="104462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103787" stop="104299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATATGGAACTCCCAATCCTTGTTATTATCTTCATCTCATTTATCTTGTTCATTATCAAGCCATATATCAATTCTAAACCCAATAAACTACCACCAGGTCCTACTGGTCTCCCAATAATCGGCTCACTCTTAAAACTAGGTACAAAACCTAACCAATCACTAGCCGAGCTAGCCAAAAAACATGGCCCTCTCATGACTCTACAGCTCGGCTCACTCACAACCATAGTAGTCTCCTCAGCCAAAGTAGCCAAAGAGATTCTCCACAAACACGACGAAACTTTCTCAGCACGTATTGTCCCTGTAGCCGTAGCTGCTCAGCCGAACCCTGAAGCCACGTTAGCATGGGTTAACGGCGATCACATGTGGAAAAAAAAGAGAAGGTTTCTAAGTACGCAAATGTTTAATAATCAACGGCTTGATTTGCTTCAAGAACTACGTCACCAAAAAGCGGAACAACTAGTGAGCCATATAAGGAGCCAGTGTGAGAGTGGCTCCGCTGTTGATATTGGACGGGTCGCGTTCGCGACCACGTTGAATTTAATATCGAACACGATATTTTCGATCGATATGGTGGATACGGAATTTAAAACGGCTCATGAGTTTAAGGAATTGGTTTGGACAGTTATGGAAGATGCCGGGGTACCAAATCTATCTGATTTTTTTCCGGTTTTAA</gDNA_template>
            <first_frame> Q  K  Y  G  T  P  N  P  C  Y  Y  L  H  L  I  Y  L  V  H  Y  Q  A  I  Y  Q  F  *  T  Q  *  T  T  T  R  S  Y  W  S  P  N  N  R  L  T  L  K  T  R  Y  K  T  *  P  I  T  S  R  A  S  Q  K  T  W  P  S  H  D  S  T  A  R  L  T  H  N  H  S  S  L  L  S  Q  S  S  Q  R  D  S  P  Q  T  R  R  N  F  L  S  T  Y  C  P  C  S  R  S  C  S  A  E  P  *  S  H  V  S  M  G  *  R  R  S  H  V  E  K  K  E  K  V  S  K  Y  A  N  V  *  *  S  T  A  *  F  A  S  R  T  T  S  P  K  S  G  T  T  S  E  P  Y  K  E  P  V  *  E  W  L  R  C  *  Y  W  T  G  R  V  R  D  H  V  E  F  N  I  E  H  D  I  F  D  R  Y  G  G  Y  G  I  *  N  G  S  *  V  *  G  I  G  L  D  S  Y  G  R  C  R  G  T  K  S  I  *  F  F  S  G  F   </first_frame>
            <second_frame>  K  N  M  E  L  P  I  L  V  I  I  F  I  S  F  I  L  F  I  I  K  P  Y  I  N  S  K  P  N  K  L  P  P  G  P  T  G  L  P  I  I  G  S  L  L  K  L  G  T  K  P  N  Q  S  L  A  E  L  A  K  K  H  G  P  L  M  T  L  Q  L  G  S  L  T  T  I  V  V  S  S  A  K  V  A  K  E  I  L  H  K  H  D  E  T  F  S  A  R  I  V  P  V  A  V  A  A  Q  P  N  P  E  A  T  L  A  W  V  N  G  D  H  M  W  K  K  K  R  R  F  L  S  T  Q  M  F  N  N  Q  R  L  D  L  L  Q  E  L  R  H  Q  K  A  E  Q  L  V  S  H  I  R  S  Q  C  E  S  G  S  A  V  D  I  G  R  V  A  F  A  T  T  L  N  L  I  S  N  T  I  F  S  I  D  M  V  D  T  E  F  K  T  A  H  E  F  K  E  L  V  W  T  V  M  E  D  A  G  V  P  N  L  S  D  F  F  P  V  L  </second_frame>
            <third_frame>   K  I  W  N  S  Q  S  L  L  L  S  S  S  H  L  S  C  S  L  S  S  H  I  S  I  L  N  P  I  N  Y  H  Q  V  L  L  V  S  Q  *  S  A  H  S  *  N  *  V  Q  N  L  T  N  H  *  P  S  *  P  K  N  M  A  L  S  *  L  Y  S  S  A  H  S  Q  P  *  *  S  P  Q  P  K  *  P  K  R  F  S  T  N  T  T  K  L  S  Q  H  V  L  S  L  *  P  *  L  L  S  R  T  L  K  P  R  *  H  G  L  T  A  I  T  C  G  K  K  R  E  G  F  *  V  R  K  C  L  I  I  N  G  L  I  C  F  K  N  Y  V  T  K  K  R  N  N  *  *  A  I  *  G  A  S  V  R  V  A  P  L  L  I  L  D  G  S  R  S  R  P  R  *  I  *  Y  R  T  R  Y  F  R  S  I  W  W  I  R  N  L  K  R  L  M  S  L  R  N  W  F  G  Q  L  W  K  M  P  G  Y  Q  I  Y  L  I  F  F  R  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103787" stop="104461"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMELPILVIIFISFILFIIKPYINSKPNKLPPGPTGLPIIGSLLKLGTKPNQSLAELAKKHGPLMTLQLGSLTTIVVSSAKVAKEILHKHDETFSARIVPVAVAAQPNPEATLAWVNGDHMWKKKRRFLSTQMFNNQRLDLLQELRHQKAEQLVSHIRSQCESGSAVDIGRVAFATTLNLISNTIFSIDMVDTEFKTAHEFKELVWTVMEDAGVPNLSDFFPVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="105720" PGL_stop="107678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105720" e_stop="106349"/>
            <exon e_start="107652" e_stop="107678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="105720" e_stop="106349" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106350" i_stop="107651" i_length="1302"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="107652" e_stop="107678" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105720" stop="106349"/>
              <exon start="107652" stop="107678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCTGAAGAACTCAACAAAGTACGACAAGAAATAATGGAACAAATAGGTCTAGAAAGAGCAGTTAAAGAATCAGACATGGACAAACTCCCATATCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCACCCCGCAGTTCCATTACTATTACCGCACAAAGCACAAAATGACATACAAGTGTTGGGCTTCAACGTGCCTAAATACAGTCAAGTTTTCGTGAATGCATGGGCAATCGGAAGAGATCCCAAGTCGTGGGAAAGGGCACTAGAGTTTTTGCCTCAAAGATTCATCGAATCTAACGTGGATTATAAAGGTAGGGATTTTGAGTTTATTCCATTTGGCGCGGGGAGGAGGATTTGTCCTGGAATACCGCTGGCTATAAGAATGGTGAATTTAATGTTGGCTTCTGTTATTCAACCATTTAAATGGAAGTTACCTGATGGAATGGCTCCGGAGGAATTGAACATGGAGGAACAATTTGGAGTAAGTTTGAGGAAGGCTGTTCCTCTTGTTGCAGTTCCTAGTATGGAAGAAAAATAATCTTCTTTTAATTTATTCCTGATTTAATTTTAATTTGCAATTGTTCTTCTTTACCTTGTTAATGTGATTGTGCGAAGTGTATTTAT : ATTAAAAAAAAAAAAGAAAAAAATAAA</gDNA_template>
            <first_frame> K  T  *  R  T  Q  Q  S  T  T  R  N  N  G  T  N  R  S  R  K  S  S  *  R  I  R  H  G  Q  T  P  I  S  S  S  S  C  K  R  N  D  E  T  S  P  R  S  S  I  T  I  T  A  Q  S  T  K  *  H  T  S  V  G  L  Q  R  A  *  I  Q  S  S  F  R  E  C  M  G  N  R  K  R  S  Q  V  V  G  K  G  T  R  V  F  A  S  K  I  H  R  I  *  R  G  L  *  R  *  G  F  *  V  Y  S  I  W  R  G  E  E  D  L  S  W  N  T  A  G  Y  K  N  G  E  F  N  V  G  F  C  Y  S  T  I  *  M  E  V  T  *  W  N  G  S  G  G  I  E  H  G  G  T  I  W  S  K  F  E  E  G  C  S  S  C  C  S  S  *  Y  G  R  K  I  I  F  F  *  F  I  P  D  L  I  L  I  C  N  C  S  S  L  P  C  *  C  D  C  A  K  C  I  Y  :  I  K  K  K  K  E  K  N  K </first_frame>
            <second_frame>  K  P  E  E  L  N  K  V  R  Q  E  I  M  E  Q  I  G  L  E  R  A  V  K  E  S  D  M  D  K  L  P  Y  L  Q  A  V  V  K  E  T  M  R  L  H  P  A  V  P  L  L  L  P  H  K  A  Q  N  D  I  Q  V  L  G  F  N  V  P  K  Y  S  Q  V  F  V  N  A  W  A  I  G  R  D  P  K  S  W  E  R  A  L  E  F  L  P  Q  R  F  I  E  S  N  V  D  Y  K  G  R  D  F  E  F  I  P  F  G  A  G  R  R  I  C  P  G  I  P  L  A  I  R  M  V  N  L  M  L  A  S  V  I  Q  P  F  K  W  K  L  P  D  G  M  A  P  E  E  L  N  M  E  E  Q  F  G  V  S  L  R  K  A  V  P  L  V  A  V  P  S  M  E  E  K  *  S  S  F  N  L  F  L  I  *  F  *  F  A  I  V  L  L  Y  L  V  N  V  I  V  R  S  V  F  I :   L  K  K  K  K  K  K  I   </second_frame>
            <third_frame>   N  L  K  N  S  T  K  Y  D  K  K  *  W  N  K  *  V  *  K  E  Q  L  K  N  Q  T  W  T  N  S  H  I  F  K  Q  L  *  K  K  R  *  D  F  T  P  Q  F  H  Y  Y  Y  R  T  K  H  K  M  T  Y  K  C  W  A  S  T  C  L  N  T  V  K  F  S  *  M  H  G  Q  S  E  E  I  P  S  R  G  K  G  H  *  S  F  C  L  K  D  S  S  N  L  T  W  I  I  K  V  G  I  L  S  L  F  H  L  A  R  G  G  G  F  V  L  E  Y  R  W  L  *  E  W  *  I  *  C  W  L  L  L  F  N  H  L  N  G  S  Y  L  M  E  W  L  R  R  N  *  T  W  R  N  N  L  E  *  V  *  G  R  L  F  L  L  L  Q  F  L  V  W  K  K  N  N  L  L  L  I  Y  S  *  F  N  F  N  L  Q  L  F  F  F  T  L  L  M  *  L  C  E  V  Y  L   : Y  *  K  K  K  R  K  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105721" stop="106263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPEELNKVRQEIMEQIGLERAVKESDMDKLPYLQAVVKETMRLHPAVPLLLPHKAQNDIQVLGFNVPKYSQVFVNAWAIGRDPKSWERALEFLPQRFIESNVDYKGRDFEFIPFGAGRRICPGIPLAIRMVNLMLASVIQPFKWKLPDGMAPEELNMEEQFGVSLRKAVPLVAVPSMEEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="116354" PGL_stop="115473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116354" e_stop="116198"/>
            <exon e_start="116130" e_stop="115473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.915" acc_prob="0.993" e_score="0.994"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="116354" e_stop="116198" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.915" acc_prob="0.993">
            <gDNA_intron_boundary i_start="116197" i_stop="116131" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="116130" e_stop="115473" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116354" stop="116198"/>
              <exon start="116130" stop="115473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116300" stop="116198"/>
              <exon start="116130" stop="115489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545830" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGCCAGCGTATTTAAGGTTGCATGAAATATTTGAAGAAAACATTGAGAAAAGAGTAAAAGGGATGACGATGAAGAGAGACGGAGATTTTTTGGATGTACTACTTGATCACTGTAAAGATGAAAATGATCGCAAAACTATAAAGCCGATAATCCTT : GATTTATTCATTGCTGGAAGTGACACATCGGCCATAACAATAGAATGGGCAATGGCAGAACTTCTTCGAAAACCTGAAGAACTCAACAAAGTAGGACAAGAAATAATGGAACAAATAGGGCTAGAAAGGGCAGTTAAAGAATCAGACATGGACAAACTCCCATACCTTCAAGCAGTTGTAAAAGAAACGATGAGACTTCATCCAGCAACTCCATTACTCTTACCTCACAAAGCCCAACACGACGTACAAGTGTTGGGATTTACCGTGCCCAAAGACAGTCAAGTTTTAGTGAATGCTTGGGCCATTGGAAGAGATCCCAAGTCATGGGAAAGGCCGCTAGAGTTTCTGCCTGGAAGATTCATGGAATCTAGTGTGGATTATAAAGGTAGAGATTTTGAGTTTATACCATTTGGCGCGGGCAGGAGAATATGTCCAGGTATGCCGCTGGCTATAAGAATGGTGAATTTGATATTGGCTTCTATTATACAACCATTTAATTGGAAGTTACCAGATGGAATGACACCAGAAAAATTGGACATGGAGGAACAGTTTGGAGTTACTTTAAAGAAGGCTATTCCTCTTATTGCAATACCTAGTATCACTACATCAAACCATTGAGTAATGACAACAACTTAATTATCGCTATATATATATATAT</gDNA_template>
            <first_frame> K  A  S  V  F  K  V  A  *  N  I  *  R  K  H  *  E  K  S  K  R  D  D  D  E  E  R  R  R  F  F  G  C  T  T  *  S  L  *  R  *  K  *  S  Q  N  Y  K  A  D  N  P   : *  F  I  H  C  W  K  *  H  I  G  H  N  N  R  M  G  N  G  R  T  S  S  K  T  *  R  T  Q  Q  S  R  T  R  N  N  G  T  N  R  A  R  K  G  S  *  R  I  R  H  G  Q  T  P  I  P  S  S  S  C  K  R  N  D  E  T  S  S  S  N  S  I  T  L  T  S  Q  S  P  T  R  R  T  S  V  G  I  Y  R  A  Q  R  Q  S  S  F  S  E  C  L  G  H  W  K  R  S  Q  V  M  G  K  A  A  R  V  S  A  W  K  I  H  G  I  *  C  G  L  *  R  *  R  F  *  V  Y  T  I  W  R  G  Q  E  N  M  S  R  Y  A  A  G  Y  K  N  G  E  F  D  I  G  F  Y  Y  T  T  I  *  L  E  V  T  R  W  N  D  T  R  K  I  G  H  G  G  T  V  W  S  Y  F  K  E  G  Y  S  S  Y  C  N  T  *  Y  H  Y  I  K  P  L  S  N  D  N  N  L  I  I  A  I  Y  I  Y   </first_frame>
            <second_frame>  R  P  A  Y  L  R  L  H  E  I  F  E  E  N  I  E  K  R  V  K  G  M  T  M  K  R  D  G  D  F  L  D  V  L  L  D  H  C  K  D  E  N  D  R  K  T  I  K  P  I  I  L  :  D  L  F  I  A  G  S  D  T  S  A  I  T  I  E  W  A  M  A  E  L  L  R  K  P  E  E  L  N  K  V  G  Q  E  I  M  E  Q  I  G  L  E  R  A  V  K  E  S  D  M  D  K  L  P  Y  L  Q  A  V  V  K  E  T  M  R  L  H  P  A  T  P  L  L  L  P  H  K  A  Q  H  D  V  Q  V  L  G  F  T  V  P  K  D  S  Q  V  L  V  N  A  W  A  I  G  R  D  P  K  S  W  E  R  P  L  E  F  L  P  G  R  F  M  E  S  S  V  D  Y  K  G  R  D  F  E  F  I  P  F  G  A  G  R  R  I  C  P  G  M  P  L  A  I  R  M  V  N  L  I  L  A  S  I  I  Q  P  F  N  W  K  L  P  D  G  M  T  P  E  K  L  D  M  E  E  Q  F  G  V  T  L  K  K  A  I  P  L  I  A  I  P  S  I  T  T  S  N  H  *  V  M  T  T  T  *  L  S  L  Y  I  Y  I  </second_frame>
            <third_frame>   G  Q  R  I  *  G  C  M  K  Y  L  K  K  T  L  R  K  E  *  K  G  *  R  *  R  E  T  E  I  F  W  M  Y  Y  L  I  T  V  K  M  K  M  I  A  K  L  *  S  R  *  S  L :   I  Y  S  L  L  E  V  T  H  R  P  *  Q  *  N  G  Q  W  Q  N  F  F  E  N  L  K  N  S  T  K  *  D  K  K  *  W  N  K  *  G  *  K  G  Q  L  K  N  Q  T  W  T  N  S  H  T  F  K  Q  L  *  K  K  R  *  D  F  I  Q  Q  L  H  Y  S  Y  L  T  K  P  N  T  T  Y  K  C  W  D  L  P  C  P  K  T  V  K  F  *  *  M  L  G  P  L  E  E  I  P  S  H  G  K  G  R  *  S  F  C  L  E  D  S  W  N  L  V  W  I  I  K  V  E  I  L  S  L  Y  H  L  A  R  A  G  E  Y  V  Q  V  C  R  W  L  *  E  W  *  I  *  Y  W  L  L  L  Y  N  H  L  I  G  S  Y  Q  M  E  *  H  Q  K  N  W  T  W  R  N  S  L  E  L  L  *  R  R  L  F  L  L  L  Q  Y  L  V  S  L  H  Q  T  I  E  *  *  Q  Q  L  N  Y  R  Y  I  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116353" stop="116198"/>
                    <exon start="116130" stop="115513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPAYLRLHEIFEENIEKRVKGMTMKRDGDFLDVLLDHCKDENDRKTIKPIILDLFIAGSDTSAITIEWAMAELLRKPEELNKVGQEIMEQIGLERAVKESDMDKLPYLQAVVKETMRLHPATPLLLPHKAQHDVQVLGFTVPKDSQVLVNAWAIGRDPKSWERPLEFLPGRFMESSVDYKGRDFEFIPFGAGRRICPGMPLAIRMVNLILASIIQPFNWKLPDGMTPEKLDMEEQFGVTLKKAIPLIAIPSITTSNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="115490" PGL_stop="115774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115490" e_stop="115774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="115490" e_stop="115774" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115490" stop="115774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATTAAGTTGTTGTCATTACTCAATGGTTTGATGTAGTGATACTAGGTATTGCAATAAGAGGAATAGCCTTCTTTAAAGTAACTCCAAACTGTTCCTCCATGTCCAATTTTTCTGGTGTCATTCCATCTGGTAACTTCCAATTAAATGGTTGTATAATAGAAGCCAATATCAAATTCACCATTCTTATAGCCAGCGGCATACCTGGACATATTCTCCTGCCCGCGCCAAATGGTATAAACTCAAAATCTCTACCTTTATAATCCACACTAGATTCCATGAAT</gDNA_template>
            <first_frame> D  N  *  V  V  V  I  T  Q  W  F  D  V  V  I  L  G  I  A  I  R  G  I  A  F  F  K  V  T  P  N  C  S  S  M  S  N  F  S  G  V  I  P  S  G  N  F  Q  L  N  G  C  I  I  E  A  N  I  K  F  T  I  L  I  A  S  G  I  P  G  H  I  L  L  P  A  P  N  G  I  N  S  K  S  L  P  L  *  S  T  L  D  S  M  N </first_frame>
            <second_frame>  I  I  K  L  L  S  L  L  N  G  L  M  *  *  Y  *  V  L  Q  *  E  E  *  P  S  L  K  *  L  Q  T  V  P  P  C  P  I  F  L  V  S  F  H  L  V  T  S  N  *  M  V  V  *  *  K  P  I  S  N  S  P  F  L  *  P  A  A  Y  L  D  I  F  S  C  P  R  Q  M  V  *  T  Q  N  L  Y  L  Y  N  P  H  *  I  P  *   </second_frame>
            <third_frame>   *  L  S  C  C  H  Y  S  M  V  *  C  S  D  T  R  Y  C  N  K  R  N  S  L  L  *  S  N  S  K  L  F  L  H  V  Q  F  F  W  C  H  S  I  W  *  L  P  I  K  W  L  Y  N  R  S  Q  Y  Q  I  H  H  S  Y  S  Q  R  H  T  W  T  Y  S  P  A  R  A  K  W  Y  K  L  K  I  S  T  F  I  I  H  T  R  F  H  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115499" stop="115753"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVVITQWFDVVILGIAIRGIAFFKVTPNCSSMSNFSGVIPSGNFQLNGCIIEANIKFTILIASGIPGHILLPAPNGINSKSLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="122269" PGL_stop="120763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122164" e_stop="121810"/>
            <exon e_start="121035" e_stop="120763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.117" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122164" e_stop="121810" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.117" acc_prob="0.980">
            <gDNA_intron_boundary i_start="121809" i_stop="121036" i_length="774"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121035" e_stop="120763" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122164" stop="121810"/>
              <exon start="121035" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122061" stop="121810"/>
              <exon start="121035" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122034" stop="121810"/>
              <exon start="121035" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCA : GGTGGAATGGAAAAAGGGTGATGCTAAGGCTGTAAAAGTATGGAGAAACCACCTGCTACCTTTTGATCACGGGCGTAATTTATTTAGCCTAGAAAAGGATTTTCAAATAAATCTGGGTATTCACCGAGGTGCTATTAAAGGGAAGGCTGGAAAGTTCGCAAATGTAATGCATGTGGTATCTTGCTTAGATTTTCAAAGTTGATAGCTCTTTTTGTCTTAGCGTCATTGTTAAAAACTTTTAAGGTTTGATGAAATATGATTCTGTTAATTTGT</gDNA_template>
            <first_frame> H  L  R  R  R  L  H  W  V  I  C  L  D  G  G  R  G  R  H  Q  R  I  Q  I  Y  V  V  M  K  *  *  S  V  Q  R  M  S  L  V  V  L  V  I  R  V  V  R  K  *  R  K  R  H  K  *  I  I  Q  W  I  I  M  L  R  M  V  G  S  G  I  L  A  T  P  R  S  L  L  D  F  H  K  E  I  A  N  L  V  M  V  P  L  P  S  N  L  I  A  E  L  T  C  S  S  W  T  Y  Y  C  H  R  K  W  S  L  H  F  C   : R  W  N  G  K  R  V  M  L  R  L  *  K  Y  G  E  T  T  C  Y  L  L  I  T  G  V  I  Y  L  A  *  K  R  I  F  K  *  I  W  V  F  T  E  V  L  L  K  G  R  L  E  S  S  Q  M  *  C  M  W  Y  L  A  *  I  F  K  V  D  S  S  F  C  L  S  V  I  V  K  N  F  *  G  L  M  K  Y  D  S  V  N  L  </first_frame>
            <second_frame>  I  *  G  G  D  C  I  G  *  F  V  W  M  V  G  E  D  D  I  K  E  F  R  Y  M  S  *  *  S  N  E  V  F  K  E  *  V  L  W  C  L  *  *  E  W  *  G  S  E  G  R  D  T  S  R  L  S  N  G  L  L  C  S  G  W  W  G  V  E  F  L  L  L  Q  E  A  C  *  T  F  T  K  K  *  P  I  L  *  W  C  H  C  H  Q  I  *  *  L  S  *  L  V  P  A  G  H  I  T  A  I  V  N  G  V  Y  T  S  A  :  G  G  M  E  K  G  *  C  *  G  C  K  S  M  E  K  P  P  A  T  F  *  S  R  A  *  F  I  *  P  R  K  G  F  S  N  K  S  G  Y  S  P  R  C  Y  *  R  E  G  W  K  V  R  K  C  N  A  C  G  I  L  L  R  F  S  K  L  I  A  L  F  V  L  A  S  L  L  K  T  F  K  V  *  *  N  M  I  L  L  I  C </second_frame>
            <third_frame>   F  E  A  E  I  A  L  G  D  L  S  G  W  W  E  R  T  T  S  K  N  S  D  I  C  R  D  E  V  M  K  C  S  K  N  E  S  C  G  A  C  D  K  S  G  E  E  V  K  E  E  T  Q  V  D  Y  P  M  D  Y  Y  A  Q  D  G  G  E  W  N  S  C  Y  S  K  K  P  A  R  L  S  Q  R  N  S  Q  S  C  N  G  A  T  A  I  K  S  N  S  *  A  N  L  F  Q  L  D  I  L  L  P  S  *  M  E  F  T  L  L  Q :   V  E  W  K  K  G  D  A  K  A  V  K  V  W  R  N  H  L  L  P  F  D  H  G  R  N  L  F  S  L  E  K  D  F  Q  I  N  L  G  I  H  R  G  A  I  K  G  K  A  G  K  F  A  N  V  M  H  V  V  S  C  L  D  F  Q  S  *  *  L  F  L  S  *  R  H  C  *  K  L  L  R  F  D  E  I  *  F  C  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122162" stop="121869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEAEIALGDLSGWWERTTSKNSDICRDEVMKCSKNESCGACDKSGEEVKEETQVDYPMDYYAQDGGEWNSCYSKKPARLSQRNSQSCNGATAIKSNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121999" stop="121810"/>
                    <exon start="121035" stop="121001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIQWIIMLRMVGSGILATPRSLLDFHKEIANLVMVPLPSNLIAELTCSSWTYYCHRKWSLHFCRWNGKRVMLRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121829" stop="121810"/>
                    <exon start="121035" stop="120834"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEFTLLQVEWKKGDAKAVKVWRNHLLPFDHGRNLFSLEKDFQINLGIHRGAIKGKAGKFANVMHVVSCLDFQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122269" e_stop="121577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="122269" e_stop="121577" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122269" stop="121577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122269" stop="121577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122268" stop="121720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGATTGCATTGTTTGAGGATGCAGTGGATGCCTGGATTCAGATTGCTTGTCCGAGGTTGTCAATTGATTGGGGAGATGCATTTAAAAAGCCTTTGCTAACACCATTTGAGGCGGAGATTGCATTGGGTGATTTGTCTGGATGGTGGGAGAGGACGACATCAAAGAATTCAGATATATGTCGTGATGAAGTAATGAAGTGTTCAAAGAATGAGTCTTGTGGTGCTTGTGATAAGAGTGGTGAGGAAGTGAAGGAAGAGACACAAGTAGATTATCCAATGGATTATTATGCTCAGGATGGTGGGGAGTGGAATTCTTGCTACTCCAAGAAGCCTGCTAGACTTTCACAAAGAAATAGCCAATCTTGTAATGGTGCCACTGCCATCAAATCTAATAGCTGAGCTAACTTGTTCCAGCTGGACATATTACTGCCATCGTAAATGGAGTTTACACTTCTGCAGTGAGTACCTCCCTCGTATTTTCTGTTGAGGCCTTTTAGCTCAAGTCTCCATGCCCGTAAAATTTTTTATAAATATATTTATTTGTTTTACAGGACTTGTTTGGAATATTATCTTTAACACTTTAGTGGTGTTATTTTCCTATCCTTATGTGAGTTATATCTATGTATCTTGGTGTCAAAACTCTAATTATGCGAGACAATAACAAAGTTTTTTAAAAAAAGCATATATCGTG</gDNA_template>
            <first_frame> R  G  L  H  C  L  R  M  Q  W  M  P  G  F  R  L  L  V  R  G  C  Q  L  I  G  E  M  H  L  K  S  L  C  *  H  H  L  R  R  R  L  H  W  V  I  C  L  D  G  G  R  G  R  H  Q  R  I  Q  I  Y  V  V  M  K  *  *  S  V  Q  R  M  S  L  V  V  L  V  I  R  V  V  R  K  *  R  K  R  H  K  *  I  I  Q  W  I  I  M  L  R  M  V  G  S  G  I  L  A  T  P  R  S  L  L  D  F  H  K  E  I  A  N  L  V  M  V  P  L  P  S  N  L  I  A  E  L  T  C  S  S  W  T  Y  Y  C  H  R  K  W  S  L  H  F  C  S  E  Y  L  P  R  I  F  C  *  G  L  L  A  Q  V  S  M  P  V  K  F  F  I  N  I  F  I  C  F  T  G  L  V  W  N  I  I  F  N  T  L  V  V  L  F  S  Y  P  Y  V  S  Y  I  Y  V  S  W  C  Q  N  S  N  Y  A  R  Q  *  Q  S  F  L  K  K  A  Y  I  V </first_frame>
            <second_frame>  E  D  C  I  V  *  G  C  S  G  C  L  D  S  D  C  L  S  E  V  V  N  *  L  G  R  C  I  *  K  A  F  A  N  T  I  *  G  G  D  C  I  G  *  F  V  W  M  V  G  E  D  D  I  K  E  F  R  Y  M  S  *  *  S  N  E  V  F  K  E  *  V  L  W  C  L  *  *  E  W  *  G  S  E  G  R  D  T  S  R  L  S  N  G  L  L  C  S  G  W  W  G  V  E  F  L  L  L  Q  E  A  C  *  T  F  T  K  K  *  P  I  L  *  W  C  H  C  H  Q  I  *  *  L  S  *  L  V  P  A  G  H  I  T  A  I  V  N  G  V  Y  T  S  A  V  S  T  S  L  V  F  S  V  E  A  F  *  L  K  S  P  C  P  *  N  F  L  *  I  Y  L  F  V  L  Q  D  L  F  G  I  L  S  L  T  L  *  W  C  Y  F  P  I  L  M  *  V  I  S  M  Y  L  G  V  K  T  L  I  M  R  D  N  N  K  V  F  *  K  K  H  I  S   </second_frame>
            <third_frame>   R  I  A  L  F  E  D  A  V  D  A  W  I  Q  I  A  C  P  R  L  S  I  D  W  G  D  A  F  K  K  P  L  L  T  P  F  E  A  E  I  A  L  G  D  L  S  G  W  W  E  R  T  T  S  K  N  S  D  I  C  R  D  E  V  M  K  C  S  K  N  E  S  C  G  A  C  D  K  S  G  E  E  V  K  E  E  T  Q  V  D  Y  P  M  D  Y  Y  A  Q  D  G  G  E  W  N  S  C  Y  S  K  K  P  A  R  L  S  Q  R  N  S  Q  S  C  N  G  A  T  A  I  K  S  N  S  *  A  N  L  F  Q  L  D  I  L  L  P  S  *  M  E  F  T  L  L  Q  *  V  P  P  S  Y  F  L  L  R  P  F  S  S  S  L  H  A  R  K  I  F  Y  K  Y  I  Y  L  F  Y  R  T  C  L  E  Y  Y  L  *  H  F  S  G  V  I  F  L  S  L  C  E  L  Y  L  C  I  L  V  S  K  L  *  L  C  E  T  I  T  K  F  F  K  K  S  I  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122267" stop="121869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIALFEDAVDAWIQIACPRLSIDWGDAFKKPLLTPFEAEIALGDLSGWWERTTSKNSDICRDEVMKCSKNESCGACDKSGEEVKEETQVDYPMDYYAQDGGEWNSCYSKKPARLSQRNSQSCNGATAIKSNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="123325" PGL_stop="122284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123325" e_stop="122284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="123325" e_stop="122284" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123325" stop="122828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123316" stop="122586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123305" stop="122703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123299" stop="122787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123215" stop="122476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122733" stop="122459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122733" stop="122467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122732" stop="122284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122571" stop="122373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTATGGAGAAAGAACACGGCGGCCTTCTCCCACTGAACCCTACTCCGGCGGCGGCGGCGTCAGCGACGACCGCAGTTGACGCTGGAGATCAGCAGTCACTGCAGCAGTCAACCCGGCCGCGTCCGAAGAGGTTCGTGAAGAACCAAATACCAGACTCCATCCTAAACGATGCAGCACTCAACGCCGCCATATCACTTTTACCTCAAAACTACAACTTCGAAATCCACAAGTGTGTATGGCGAGTGCGAACTTCAAGTGCCAAGCGTGTGGCCCTGCAGTTCCCTGAGGGTCTCCTCATGTACTCACTCATCATCTCCGATATACTCTCCACATTCACTTCCGCCACTCACTGTTTCATCCTCGGCGACGTGACTTTCGGCGCGTGTTGCGTTGACGACCTCTCGGCGGGAGCGCTTTCCGCTGATCTCCTCATTCATTTCGGCCATAGCTGCCTCGTGCCTATTGATTCCACCACTATCCCATGCCTTTATATATTCGTCGAAATCTCAATCGATGTTCACAGGTTGTTGAATGAACTCAAACTCAATTTTTATAATTCCGATACGTATGACAATATCATTATGGCTGGGACAATTCAATTTGCTTCTGCAATTCGGGCGGTTAAGCCCGAACTTGAAAAATTGGGGTTTAGTATTTTGATTCCTCAAGCTAAACCGTTATCAGCTGGGGAGGTACTCGGCTGTACTGCCCCGAGTGTTAAGAACAGATTTTCTGATGGAGAGAATGTAGTTTTGATATTTGTGGCTGACGGTAGGTTTCATTTGGAGGCGTTTATGATAGCGAATCCGGGGATAAAGACTTACAGATATGATCCGTTTATAGGGAAGTTGTTTGTGGAGGAGTATGATCATAAGGGAATGAAGGAGGAGAGGAAGAGAGCGATTGAAAAAGCCAGGGGGGCGAAGAATTGGGGGATAGTGCTTGGGACATTAGGTAGGCAAGGGAATCCAAGGATATTGGATAGGTTAGAGAAGAAAATGTCCGAAAAGGGGATGACTTGGACAGTTGTGTTGATGTC</gDNA_template>
            <first_frame> K  L  W  R  K  N  T  A  A  F  S  H  *  T  L  L  R  R  R  R  R  Q  R  R  P  Q  L  T  L  E  I  S  S  H  C  S  S  Q  P  G  R  V  R  R  G  S  *  R  T  K  Y  Q  T  P  S  *  T  M  Q  H  S  T  P  P  Y  H  F  Y  L  K  T  T  T  S  K  S  T  S  V  Y  G  E  C  E  L  Q  V  P  S  V  W  P  C  S  S  L  R  V  S  S  C  T  H  S  S  S  P  I  Y  S  P  H  S  L  P  P  L  T  V  S  S  S  A  T  *  L  S  A  R  V  A  L  T  T  S  R  R  E  R  F  P  L  I  S  S  F  I  S  A  I  A  A  S  C  L  L  I  P  P  L  S  H  A  F  I  Y  S  S  K  S  Q  S  M  F  T  G  C  *  M  N  S  N  S  I  F  I  I  P  I  R  M  T  I  S  L  W  L  G  Q  F  N  L  L  L  Q  F  G  R  L  S  P  N  L  K  N  W  G  L  V  F  *  F  L  K  L  N  R  Y  Q  L  G  R  Y  S  A  V  L  P  R  V  L  R  T  D  F  L  M  E  R  M  *  F  *  Y  L  W  L  T  V  G  F  I  W  R  R  L  *  *  R  I  R  G  *  R  L  T  D  M  I  R  L  *  G  S  C  L  W  R  S  M  I  I  R  E  *  R  R  R  G  R  E  R  L  K  K  P  G  G  R  R  I  G  G  *  C  L  G  H  *  V  G  K  G  I  Q  G  Y  W  I  G  *  R  R  K  C  P  K  R  G  *  L  G  Q  L  C  *  C  </first_frame>
            <second_frame>  N  Y  G  E  R  T  R  R  P  S  P  T  E  P  Y  S  G  G  G  G  V  S  D  D  R  S  *  R  W  R  S  A  V  T  A  A  V  N  P  A  A  S  E  E  V  R  E  E  P  N  T  R  L  H  P  K  R  C  S  T  Q  R  R  H  I  T  F  T  S  K  L  Q  L  R  N  P  Q  V  C  M  A  S  A  N  F  K  C  Q  A  C  G  P  A  V  P  *  G  S  P  H  V  L  T  H  H  L  R  Y  T  L  H  I  H  F  R  H  S  L  F  H  P  R  R  R  D  F  R  R  V  L  R  *  R  P  L  G  G  S  A  F  R  *  S  P  H  S  F  R  P  *  L  P  R  A  Y  *  F  H  H  Y  P  M  P  L  Y  I  R  R  N  L  N  R  C  S  Q  V  V  E  *  T  Q  T  Q  F  L  *  F  R  Y  V  *  Q  Y  H  Y  G  W  D  N  S  I  C  F  C  N  S  G  G  *  A  R  T  *  K  I  G  V  *  Y  F  D  S  S  S  *  T  V  I  S  W  G  G  T  R  L  Y  C  P  E  C  *  E  Q  I  F  *  W  R  E  C  S  F  D  I  C  G  *  R  *  V  S  F  G  G  V  Y  D  S  E  S  G  D  K  D  L  Q  I  *  S  V  Y  R  E  V  V  C  G  G  V  *  S  *  G  N  E  G  G  E  E  E  S  D  *  K  S  Q  G  G  E  E  L  G  D  S  A  W  D  I  R  *  A  R  E  S  K  D  I  G  *  V  R  E  E  N  V  R  K  G  D  D  L  D  S  C  V  D  V </second_frame>
            <third_frame>   T  M  E  K  E  H  G  G  L  L  P  L  N  P  T  P  A  A  A  A  S  A  T  T  A  V  D  A  G  D  Q  Q  S  L  Q  Q  S  T  R  P  R  P  K  R  F  V  K  N  Q  I  P  D  S  I  L  N  D  A  A  L  N  A  A  I  S  L  L  P  Q  N  Y  N  F  E  I  H  K  C  V  W  R  V  R  T  S  S  A  K  R  V  A  L  Q  F  P  E  G  L  L  M  Y  S  L  I  I  S  D  I  L  S  T  F  T  S  A  T  H  C  F  I  L  G  D  V  T  F  G  A  C  C  V  D  D  L  S  A  G  A  L  S  A  D  L  L  I  H  F  G  H  S  C  L  V  P  I  D  S  T  T  I  P  C  L  Y  I  F  V  E  I  S  I  D  V  H  R  L  L  N  E  L  K  L  N  F  Y  N  S  D  T  Y  D  N  I  I  M  A  G  T  I  Q  F  A  S  A  I  R  A  V  K  P  E  L  E  K  L  G  F  S  I  L  I  P  Q  A  K  P  L  S  A  G  E  V  L  G  C  T  A  P  S  V  K  N  R  F  S  D  G  E  N  V  V  L  I  F  V  A  D  G  R  F  H  L  E  A  F  M  I  A  N  P  G  I  K  T  Y  R  Y  D  P  F  I  G  K  L  F  V  E  E  Y  D  H  K  G  M  K  E  E  R  K  R  A  I  E  K  A  R  G  A  K  N  W  G  I  V  L  G  T  L  G  R  Q  G  N  P  R  I  L  D  R  L  E  K  K  M  S  E  K  G  M  T  W  T  V  V  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123323" stop="122286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEKEHGGLLPLNPTPAAAASATTAVDAGDQQSLQQSTRPRPKRFVKNQIPDSILNDAALNAAISLLPQNYNFEIHKCVWRVRTSSAKRVALQFPEGLLMYSLIISDILSTFTSATHCFILGDVTFGACCVDDLSAGALSADLLIHFGHSCLVPIDSTTIPCLYIFVEISIDVHRLLNELKLNFYNSDTYDNIIMAGTIQFASAIRAVKPELEKLGFSILIPQAKPLSAGEVLGCTAPSVKNRFSDGENVVLIFVADGRFHLEAFMIANPGIKTYRYDPFIGKLFVEEYDHKGMKEERKRAIEKARGAKNWGIVLGTLGRQGNPRILDRLEKKMSEKGMTWTVVLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="124652" PGL_stop="124014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124652" e_stop="124595"/>
            <exon e_start="124484" e_stop="124014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.981" e_score="0.966"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="124652" e_stop="124595" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.981">
            <gDNA_intron_boundary i_start="124594" i_stop="124485" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="124484" e_stop="124014" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124652" stop="124595"/>
              <exon start="124484" stop="124014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCGATGCTTGGAATCAGGTATTATATGCGCAAAATGGGAGAGGCTGCAGGAATTCCG : ATAGAACCTGAATCACAAACTCACCTTCTGGATACAACGATGAGTATGGAGGGGGTTCTGTTGGCTGGTGTTCCTGGTGCTGGTGGTTTTGATGCGGTCTTTGCTGTCACTTTGGGGGCTTCAAGCAAAAATGTGACAAAAACTTGGAGTTCACTCAATGTTCTTGCTATGCTAGTTACGGAAGATCCCCGCGGTGTATCTTTGGAAGAGCATGATCCTCGAGCAAAGGAAATTACTGCAGCTGTTTCTTCAATCCAACTTCAATAATGATCTGCATGTATAGGATATTATATCCAATGGATATATTATGACTTCAACATCAGATTTTACAACACAAAAAGGATATATTAGAGCTCTGAATTGTAACGTCAGAATCACTTTCATCAATAAGCACCTAATGAGAGCCTGTTGTATTTTTACCCAAAACTTTGATCTTGTTAGAATTAGTTCCATTTTACTTCAGAACTCTGT</gDNA_template>
            <first_frame> C  D  A  W  N  Q  V  L  Y  A  Q  N  G  R  G  C  R  N  S   : D  R  T  *  I  T  N  S  P  S  G  Y  N  D  E  Y  G  G  G  S  V  G  W  C  S  W  C  W  W  F  *  C  G  L  C  C  H  F  G  G  F  K  Q  K  C  D  K  N  L  E  F  T  Q  C  S  C  Y  A  S  Y  G  R  S  P  R  C  I  F  G  R  A  *  S  S  S  K  G  N  Y  C  S  C  F  F  N  P  T  S  I  M  I  C  M  Y  R  I  L  Y  P  M  D  I  L  *  L  Q  H  Q  I  L  Q  H  K  K  D  I  L  E  L  *  I  V  T  S  E  S  L  S  S  I  S  T  *  *  E  P  V  V  F  L  P  K  T  L  I  L  L  E  L  V  P  F  Y  F  R  T  L  </first_frame>
            <second_frame>  A  M  L  G  I  R  Y  Y  M  R  K  M  G  E  A  A  G  I  P  :  I  E  P  E  S  Q  T  H  L  L  D  T  T  M  S  M  E  G  V  L  L  A  G  V  P  G  A  G  G  F  D  A  V  F  A  V  T  L  G  A  S  S  K  N  V  T  K  T  W  S  S  L  N  V  L  A  M  L  V  T  E  D  P  R  G  V  S  L  E  E  H  D  P  R  A  K  E  I  T  A  A  V  S  S  I  Q  L  Q  *  *  S  A  C  I  G  Y  Y  I  Q  W  I  Y  Y  D  F  N  I  R  F  Y  N  T  K  R  I  Y  *  S  S  E  L  *  R  Q  N  H  F  H  Q  *  A  P  N  E  S  L  L  Y  F  Y  P  K  L  *  S  C  *  N  *  F  H  F  T  S  E  L  C </second_frame>
            <third_frame>   R  C  L  E  S  G  I  I  C  A  K  W  E  R  L  Q  E  F  R :   *  N  L  N  H  K  L  T  F  W  I  Q  R  *  V  W  R  G  F  C  W  L  V  F  L  V  L  V  V  L  M  R  S  L  L  S  L  W  G  L  Q  A  K  M  *  Q  K  L  G  V  H  S  M  F  L  L  C  *  L  R  K  I  P  A  V  Y  L  W  K  S  M  I  L  E  Q  R  K  L  L  Q  L  F  L  Q  S  N  F  N  N  D  L  H  V  *  D  I  I  S  N  G  Y  I  M  T  S  T  S  D  F  T  T  Q  K  G  Y  I  R  A  L  N  C  N  V  R  I  T  F  I  N  K  H  L  M  R  A  C  C  I  F  T  Q  N  F  D  L  V  R  I  S  S  I  L  L  Q  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124651" stop="124595"/>
                    <exon start="124484" stop="124218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLGIRYYMRKMGEAAGIPIEPESQTHLLDTTMSMEGVLLAGVPGAGGFDAVFAVTLGASSKNVTKTWSSLNVLAMLVTEDPRGVSLEEHDPRAKEITAAVSSIQLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="138550" PGL_stop="133190"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138550" e_stop="138288"/>
            <exon e_start="137614" e_stop="137086"/>
            <exon e_start="136827" e_stop="136708"/>
            <exon e_start="136496" e_stop="136276"/>
            <exon e_start="136177" e_stop="136048"/>
            <exon e_start="135943" e_stop="135881"/>
            <exon e_start="135796" e_stop="135719"/>
            <exon e_start="135199" e_stop="135108"/>
            <exon e_start="135015" e_stop="134950"/>
            <exon e_start="134835" e_stop="134682"/>
            <exon e_start="134107" e_stop="133448"/>
            <exon e_start="133207" e_stop="133196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.736" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.930" e_score="0.993"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="138550" e_stop="138288" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.999">
            <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137614" e_stop="137086" e_length="529"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="137085" i_stop="136828" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136827" e_stop="136708" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136496" e_stop="136276" e_length="221"/>
          </exon>
          <intron i_serial="4" don_prob="0.736" acc_prob="0.978">
            <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="136177" e_stop="136048" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135943" e_stop="135881" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.616" acc_prob="0.983">
            <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="135796" e_stop="135719" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="135199" e_stop="135108" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="135015" e_stop="134950" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.947">
            <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="134835" e_stop="134682" e_length="154"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574"/>
          </intron>
          <exon e_serial="11" e_score="0.993">
            <gDNA_exon_boundary e_start="134107" e_stop="133448" e_length="660"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.930">
            <gDNA_intron_boundary i_start="133447" i_stop="133208" i_length="240"/>
          </intron>
          <exon e_serial="12" e_score="0.583">
            <gDNA_exon_boundary e_start="133207" e_stop="133196" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138550" stop="138288"/>
              <exon start="137614" stop="137439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138474" stop="138288"/>
              <exon start="137614" stop="137243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138474" stop="138288"/>
              <exon start="137614" stop="137283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138471" stop="138288"/>
              <exon start="137614" stop="137243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138444" stop="138288"/>
              <exon start="137614" stop="137283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138349" stop="138288"/>
              <exon start="137614" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138317" stop="138288"/>
              <exon start="137614" stop="137295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137463" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137169" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136818" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136747" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136478" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136331" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136330" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="134054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136330" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136310" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136290" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135934" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135765" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135164" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135164" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="134043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135115" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134981" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134980" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134833" stop="134682"/>
              <exon start="134107" stop="133618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134727" stop="134682"/>
              <exon start="134107" stop="133541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134727" stop="134682"/>
              <exon start="134107" stop="133628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134046" stop="133448"/>
              <exon start="133207" stop="133196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134046" stop="133448"/>
              <exon start="133207" stop="133196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134046" stop="133467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134046" stop="133561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134011" stop="133448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134002" stop="133604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133530" stop="133454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTGTAGGCATATCTGGTCACAATAAATAAGGCAATCACAAAATGAAGTTAGAAATTTGACCGCGTTGATTGCTGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC : GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAG : GATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG : GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA : GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT : TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG : GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG : AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA : ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA : AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG : ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTCTACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCTGTTTTAGACTAAACAAAGTATTTCTCAAGTACTATT : TTAAACCAAAGA</gDNA_template>
            <first_frame> T  S  V  G  I  S  G  H  N  K  *  G  N  H  K  M  K  L  E  I  *  P  R  *  L  L  P  S  Q  V  E  *  T  K  S  E  N  L  H  R  F  I  A  Y  R  I  *  L  S  Y  P  Y  F  T  N  H  L  Y  I  *  S  T  F  P  D  I  P  I  *  L  S  F  S  L  C  A  V  V  A  F  K  M  S  Y  N  N  D  P :   Y  I  D  E  D  G  E  A  L  V  D  F  D  E  D  V  R  S  D  N  E  Q  Q  E  Q  F  L  G  D  N  L  D  D  D  D  A  W  N  Q  R  Q  R  E  R  S  P  T  P  V  Y  D  D  L  N  K  S  K  P  R  K  R  L  I  K  K  S  S  A  R  E  N  T  P  D  I  G  L  G  D  E  E  D  A  Y  G  G  A  A  A  D  D  M  T  G  N  M  H  D  E  F  D  G  G  G  P  S  S  S  S  A  G  G  G  K  R  K  R  F  G  M  E  F  S  E  E  K  R  K  E  K  K  G  R  E  K  G  E  K  K  F  K  L  R  K  N  G  G  Y  S  G  G  S  R  L  K  D  Q  E  G  D  R  E  M  K  E  M  W  D  T  I  A  G  G  D  S  E  :  D  D  Q  E  G  P  K  N  A  D  D  D  N  F  I  D  D  S  G  V  D  P  A  D  R  Y  G  S  D  N  E  P  L  S  P  S  N  A  P  Q  :  A  E  E  G  E  E  D  D  E  I  K  Q  L  F  K  G  G  K  K  K  K  K  T  E  K  S  A  A  E  I  A  L  L  V  E  N  V  M  A  E  L  E  V  V  A  E  E  D  A  E  L  N  R  H  S  K  P  A  I  N  K  L  K  K  L  P  L  L  I  D  V  L  S  K :   K  Q  L  Q  Q  E  F  L  D  H  G  V  L  T  L  L  R  T  W  L  E  P  L  P  D  G  S  L  P  N  I  N  I  R  A  A  I  L  K  I  L  T  D  :  Y  P  I  D  L  E  Q  Y  D  R  R  E  M  L  K  K  S  G  L  G  K  :  V  I  M  F  L  S  K  S  D  E  E  T  T  S  N  R  K  L  A  K  D  L  V  D  K  W  :  S  R  P  I  F  N  K  S  T  R  F  E  D  M  R  N  L  E  D  E  R  A  A  Q  Y  R  R  P  L  K  K :   P  M  N  K  A  S  G  M  E  S  R  D  D  D  L  D  L  A  G  Y  S  Q :   G  Q  K  S  G  Q  S  S  G  R  Q  L  T  S  R  P  E  A  M  S  M  D  F  V  V  R  P  Q  S  K  I  D  P  D  E  V  R  A  R  A  R  A  M  V  Q  D  Q  R  R  M  K  :  M  N  K  K  L  Q  Q  L  K  A  P  K  K  K  K  L  Q  A  T  K  L  S  V  E  G  R  G  M  V  K  Y  L  *  A  V  F  I  V  L  A  L  V  R  V  N  S  L  L  A  L  L  H  K  D  G  C  S  S  E  L  R  I  W  T  V  A  N  Q  S  A  L  *  M  W  D  H  F  *  N  *  F  E  G  F  *  Y  V  M  L  M  I  S  R  H  *  L  N  G  A  A  C  Y  L  L  I  L  F  L  P  *  Q  L  S  E  D  G  F  F  L  I  T  C  W  C  V  A  D  T  H  *  F  W  F  P  N  K  F  P  S  H  W  C  N  G  S  H  G  C  C  Y  G  *  C  A  T  W  N  T  I  L  L  P  F  G  M  Y  Y  A  V  F  L  K  L  F  S  *  V  F  Y  P  F  I  C  L  F  S  I  I  S  L  *  V  E  T  K  I  L  F  F  S  R  R  Q  I  V  L  F  P  V  L  D  *  T  K  Y  F  S  S  T  I  :  L  N  Q  R </first_frame>
            <second_frame>  Q  V  *  A  Y  L  V  T  I  N  K  A  I  T  K  *  S  *  K  F  D  R  V  D  C  C  L  H  K  *  S  K  Q  S  P  K  T  S  I  V  S  *  P  I  E  F  D  *  A  T  P  T  S  Q  I  I  Y  I  Y  N  L  L  F  Q  T  Y  P  S  N  Y  L  F  L  S  A  P  L  *  R  S  R  *  V  T  T  T  I   : R  T  *  M  R  M  E  R  H  W  W  I  L  M  R  M  S  D  Q  I  T  S  N  R  N  N  F  L  V  T  I  W  T  M  M  M  H  G  I  R  D  S  E  S  G  H  R  P  Q  Y  M  M  I  L  T  S  L  S  P  G  S  G  *  L  R  N  L  Q  L  E  K  T  H  R  I  L  G  *  E  M  R  R  M  L  M  V  V  L  L  L  M  T  *  L  A  I  C  M  M  S  L  T  A  V  V  L  H  L  P  L  L  V  V  E  R  G  R  G  L  A  W  S  L  V  K  R  R  G  R  R  R  R  G  E  R  K  E  R  R  N  L  S  *  G  K  M  G  V  T  L  E  E  A  G  *  R  T  R  R  G  I  G  R  *  R  R  C  G  T  P  L  L  V  V  T  L  R :   M  T  K  K  V  Q  R  M  P  M  M  I  T  S  L  M  I  V  V  *  I  Q  L  T  G  M  E  A  T  M  N  H  C  L  P  A  M  L  H  R :   L  K  K  G  K  R  M  T  K  S  S  S  S  S  R  E  A  R  R  K  R  K  L  K  R  V  Q  Q  K  L  H  C  *  *  R  M  L  W  L  S  W  K  L  L  P  R  R  M  P  N  *  I  D  I  P  N  L  L  *  I  N  *  K  N  S  L  F  S  *  M  S  C  L   : R  S  N  F  S  K  N  F  *  I  M  E  C  *  L  F  *  G  L  G  L  N  P  F  Q  M  E  A  C  P  T  *  T  F  V  L  R  S  *  R  S  L  L  I :   I  Q  L  I  L  S  S  M  I  E  E  R  C  *  K  R  V  V  L  E  R :   L  L  C  S  S  R  N  Q  M  R  R  L  H  L  T  G  N  L  P  R  I  W  L  T  N  G :   V  D  Q  Y  S  T  R  V  H  G  L  K  T  *  E  I  *  R  M  R  E  L  L  N  T  G  G  P  *  K   : N  P  *  I  K  H  Q  E  W  N  P  E  T  M  T  L  T  W  L  D  I  H   : K  G  K  N  L  V  S  H  L  V  G  N  L  H  Q  G  L  K  Q  C  Q  W  I  L  W  C  V  H  S  L  R  L  I  L  T  K  L  G  P  G  L  E  Q  W  F  K  T  S  A  E  *  R :   *  I  R  N  C  S  S  *  K  L  P  K  R  R  N  S  K  P  Q  N  *  V  W  R  V  V  A  W  *  S  T  S  R  L  C  L  L  C  L  P  L  L  G  *  I  A  C  W  L  C  Y  T  R  M  G  V  L  L  S  F  V  S  G  Q  W  L  I  K  V  P  C  E  C  G  I  I  F  E  I  S  L  R  A  S  S  M  L  C  *  *  S  V  V  I  D  *  M  V  P  H  V  I  Y  L  Y  Y  S  F  L  S  S  F  L  R  M  A  S  S  L  *  H  V  G  V  S  L  I  P  I  N  F  G  S  L  I  S  F  Q  V  I  G  V  M  E  V  M  A  V  A  M  G  D  A  Q  L  G  I  L  Y  Y  C  R  L  A  C  I  M  L  F  S  *  S  S  L  A  R  F  S  T  L  S  F  A  C  L  V  L  L  A  C  E  L  R  Q  R  S  Y  S  S  P  E  G  K  L  Y  F  F  L  F  *  T  K  Q  S  I  S  Q  V  L  F :   *  T  K   </second_frame>
            <third_frame>   K  C  R  H  I  W  S  Q  *  I  R  Q  S  Q  N  E  V  R  N  L  T  A  L  I  A  A  F  T  S  R  V  N  K  V  R  K  P  P  S  F  H  S  L  *  N  L  I  E  L  P  L  L  H  K  S  S  I  Y  I  I  Y  F  S  R  H  T  H  L  T  I  F  F  S  L  R  R  C  S  V  Q  D  E  L  Q  Q  R  S  :  V  H  R  *  G  W  R  G  I  G  G  F  *  *  G  C  P  I  R  *  R  A  T  G  T  I  S  W  *  Q  S  G  R  *  *  C  M  E  S  E  T  A  R  A  V  T  D  P  S  I  *  *  S  *  Q  V  *  A  Q  E  A  V  N  *  E  I  F  S  *  R  K  H  T  G  Y  W  A  R  R  *  G  G  C  L  W  W  C  C  C  *  *  H  D  W  Q  Y  A  *  *  V  *  R  R  W  S  F  I  F  L  C  W  W  W  K  E  E  E  V  W  H  G  V  *  *  R  E  E  E  G  E  E  G  E  R  E  R  R  E  E  I  *  V  E  E  K  W  G  L  L  W  R  K  Q  V  K  G  P  G  G  G  S  G  D  E  G  D  V  G  H  H  C  W  W  *  L  *   : G  *  P  R  R  S  K  E  C  R  *  *  *  L  H  *  *  *  W  C  R  S  S  *  Q  V  W  K  R  Q  *  T  T  V  S  Q  Q  C  S  T   : G  *  R  R  G  R  G  *  R  N  Q  A  A  L  Q  G  R  Q  E  E  K  E  N  *  K  E  C  S  R  N  C  I  A  S  R  E  C  Y  G  *  V  G  S  C  C  R  G  G  C  R  T  E  *  T  F  Q  T  C  Y  K  *  T  K  K  T  P  S  S  H  R  C  P  V  *  :  E  A  T  S  A  R  I  F  R  S  W  S  V  D  S  F  E  D  L  A  *  T  P  S  R  W  K  P  A  Q  H  K  H  S  C  C  D  P  K  D  P  Y  *   : L  S  N  *  S  *  A  V  *  *  K  R  D  V  E  K  E  W  S  W  K   : G  Y  Y  V  P  L  E  I  R  *  G  D  Y  I  *  Q  E  T  C  Q  G  F  G  *  Q  M   : E  S  T  N  I  Q  Q  E  Y  T  V  *  R  H  E  K  S  R  G  *  E  S  C  S  I  Q  A  A  L  E  K  :  T  H  E  *  S  I  R  N  G  I  Q  R  R  *  P  *  L  G  W  I  F  T  :  R  A  K  I  W  S  V  I  W  *  A  T  Y  I  K  A  *  S  N  V  N  G  F  C  G  A  S  T  V  *  D  *  S  *  R  S  *  G  Q  G  *  S  N  G  S  R  P  A  P  N  E   : D  E  *  E  T  A  A  V  K  S  S  Q  K  E  E  T  P  S  H  K  T  E  C  G  G  S  W  H  G  E  V  P  L  G  C  V  Y  C  A  C  P  C  *  G  K  *  P  V  G  S  A  T  Q  G  W  V  F  F  *  A  S  Y  L  D  S  G  *  S  K  C  L  V  N  V  G  S  F  L  K  L  V  *  G  L  L  V  C  Y  A  D  D  Q  S  S  L  I  K  W  C  R  M  L  S  T  Y  I  I  P  S  L  A  A  F  *  G  W  L  L  P  Y  N  M  L  V  C  R  *  Y  P  L  I  L  V  P  *  *  V  S  K  S  L  V  *  W  K  S  W  L  L  L  W  V  M  R  N  L  E  Y  Y  I  I  A  V  W  H  V  L  C  C  F  P  E  A  L  *  L  G  F  L  P  F  H  L  L  V  *  Y  Y  *  L  V  S  *  D  K  D  L  I  L  L  Q  K  A  N  C  T  F  S  C  F  R  L  N  K  V  F  L  K  Y  Y   : F  K  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138343" stop="138288"/>
                    <exon start="137614" stop="137086"/>
                    <exon start="136827" stop="136708"/>
                    <exon start="136496" stop="136276"/>
                    <exon start="136177" stop="136048"/>
                    <exon start="135943" stop="135881"/>
                    <exon start="135796" stop="135719"/>
                    <exon start="135199" stop="135108"/>
                    <exon start="135015" stop="134950"/>
                    <exon start="134835" stop="134682"/>
                    <exon start="134107" stop="134009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFSLCAVVAFKMSYNNDPYIDEDGEALVDFDEDVRSDNEQQEQFLGDNLDDDDAWNQRQRERSPTPVYDDLNKSKPRKRLIKKSSARENTPDIGLGDEEDAYGGAAADDMTGNMHDEFDGGGPSSSSAGGGKRKRFGMEFSEEKRKEKKGREKGEKKFKLRKNGGYSGGSRLKDQEGDREMKEMWDTIAGGDSEDDQEGPKNADDDNFIDDSGVDPADRYGSDNEPLSPSNAPQAEEGEEDDEIKQLFKGGKKKKKTEKSAAEIALLVENVMAELEVVAEEDAELNRHSKPAINKLKKLPLLIDVLSKKQLQQEFLDHGVLTLLRTWLEPLPDGSLPNINIRAAILKILTDYPIDLEQYDRREMLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNLEDERAAQYRRPLKKPMNKASGMESRDDDLDLAGYSQGQKSGQSSGRQLTSRPEAMSMDFVVRPQSKIDPDEVRARARAMVQDQRRMKMNKKLQQLKAPKKKKLQATKLSVEGRGMVKYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="138550" e_stop="138288"/>
            <exon e_start="137614" e_stop="137086"/>
            <exon e_start="136827" e_stop="136708"/>
            <exon e_start="136496" e_stop="136276"/>
            <exon e_start="136177" e_stop="136048"/>
            <exon e_start="135943" e_stop="135881"/>
            <exon e_start="135796" e_stop="135719"/>
            <exon e_start="135199" e_stop="135108"/>
            <exon e_start="135015" e_stop="134950"/>
            <exon e_start="134835" e_stop="134682"/>
            <exon e_start="134107" e_stop="133612"/>
            <exon e_start="133207" e_stop="133190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.736" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="138550" e_stop="138288" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.999">
            <gDNA_intron_boundary i_start="138287" i_stop="137615" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137614" e_stop="137086" e_length="529"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="137085" i_stop="136828" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136827" e_stop="136708" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="136707" i_stop="136497" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136496" e_stop="136276" e_length="221"/>
          </exon>
          <intron i_serial="4" don_prob="0.736" acc_prob="0.978">
            <gDNA_intron_boundary i_start="136275" i_stop="136178" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="136177" e_stop="136048" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="136047" i_stop="135944" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135943" e_stop="135881" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.616" acc_prob="0.983">
            <gDNA_intron_boundary i_start="135880" i_stop="135797" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="135796" e_stop="135719" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="135718" i_stop="135200" i_length="519"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="135199" e_stop="135108" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="135107" i_stop="135016" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="135015" e_stop="134950" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.947">
            <gDNA_intron_boundary i_start="134949" i_stop="134836" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="134835" e_stop="134682" e_length="154"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134681" i_stop="134108" i_length="574"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="134107" e_stop="133612" e_length="496"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.930">
            <gDNA_intron_boundary i_start="133611" i_stop="133208" i_length="404"/>
          </intron>
          <exon e_serial="12" e_score="0.500">
            <gDNA_exon_boundary e_start="133207" e_stop="133190" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138550" stop="138288"/>
              <exon start="137614" stop="137439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138474" stop="138288"/>
              <exon start="137614" stop="137243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138474" stop="138288"/>
              <exon start="137614" stop="137283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138471" stop="138288"/>
              <exon start="137614" stop="137243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138444" stop="138288"/>
              <exon start="137614" stop="137283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138349" stop="138288"/>
              <exon start="137614" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138317" stop="138288"/>
              <exon start="137614" stop="137295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137463" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137169" stop="137086"/>
              <exon start="136827" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136818" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136747" stop="136708"/>
              <exon start="136496" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136478" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136331" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136330" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="134054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136330" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136310" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136290" stop="136276"/>
              <exon start="136177" stop="136048"/>
              <exon start="135943" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135934" stop="135881"/>
              <exon start="135796" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135765" stop="135719"/>
              <exon start="135199" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135164" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135164" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="134043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135115" stop="135108"/>
              <exon start="135015" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134980" stop="134950"/>
              <exon start="134835" stop="134682"/>
              <exon start="134107" stop="133703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134833" stop="134682"/>
              <exon start="134107" stop="133618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134727" stop="134682"/>
              <exon start="134107" stop="133628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133843" stop="133612"/>
              <exon start="133207" stop="133190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133843" stop="133612"/>
              <exon start="133207" stop="133190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTGTAGGCATATCTGGTCACAATAAATAAGGCAATCACAAAATGAAGTTAGAAATTTGACCGCGTTGATTGCTGCCTTCACAAGTAGAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAATCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCC : GTACATAGATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGACGATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTAATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATGACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTTAGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGCAGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAG : GATGACCAAGAAGGTCCAAAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGCAATGCTCCACAG : GCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGTGCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAACCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAA : GAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTGTTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACTGAT : TATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAG : GTTATTATGTTCCTCTCGAAATCAGATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGG : AGTCGACCAATATTCAACAAGAGTACACGGTTTGAAGACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAA : ACCCATGAATAAAGCATCAGGAATGGAATCCAGAGACGATGACCTTGACTTGGCTGGATATTCACA : AGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATGTCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGAATGAAG : ATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATGGTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCTGAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATGCTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTCCTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGTTGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGT : TTAAACCAAAGACTATGA</gDNA_template>
            <first_frame> T  S  V  G  I  S  G  H  N  K  *  G  N  H  K  M  K  L  E  I  *  P  R  *  L  L  P  S  Q  V  E  *  T  K  S  E  N  L  H  R  F  I  A  Y  R  I  *  L  S  Y  P  Y  F  T  N  H  L  Y  I  *  S  T  F  P  D  I  P  I  *  L  S  F  S  L  C  A  V  V  A  F  K  M  S  Y  N  N  D  P :   Y  I  D  E  D  G  E  A  L  V  D  F  D  E  D  V  R  S  D  N  E  Q  Q  E  Q  F  L  G  D  N  L  D  D  D  D  A  W  N  Q  R  Q  R  E  R  S  P  T  P  V  Y  D  D  L  N  K  S  K  P  R  K  R  L  I  K  K  S  S  A  R  E  N  T  P  D  I  G  L  G  D  E  E  D  A  Y  G  G  A  A  A  D  D  M  T  G  N  M  H  D  E  F  D  G  G  G  P  S  S  S  S  A  G  G  G  K  R  K  R  F  G  M  E  F  S  E  E  K  R  K  E  K  K  G  R  E  K  G  E  K  K  F  K  L  R  K  N  G  G  Y  S  G  G  S  R  L  K  D  Q  E  G  D  R  E  M  K  E  M  W  D  T  I  A  G  G  D  S  E  :  D  D  Q  E  G  P  K  N  A  D  D  D  N  F  I  D  D  S  G  V  D  P  A  D  R  Y  G  S  D  N  E  P  L  S  P  S  N  A  P  Q  :  A  E  E  G  E  E  D  D  E  I  K  Q  L  F  K  G  G  K  K  K  K  K  T  E  K  S  A  A  E  I  A  L  L  V  E  N  V  M  A  E  L  E  V  V  A  E  E  D  A  E  L  N  R  H  S  K  P  A  I  N  K  L  K  K  L  P  L  L  I  D  V  L  S  K :   K  Q  L  Q  Q  E  F  L  D  H  G  V  L  T  L  L  R  T  W  L  E  P  L  P  D  G  S  L  P  N  I  N  I  R  A  A  I  L  K  I  L  T  D  :  Y  P  I  D  L  E  Q  Y  D  R  R  E  M  L  K  K  S  G  L  G  K  :  V  I  M  F  L  S  K  S  D  E  E  T  T  S  N  R  K  L  A  K  D  L  V  D  K  W  :  S  R  P  I  F  N  K  S  T  R  F  E  D  M  R  N  L  E  D  E  R  A  A  Q  Y  R  R  P  L  K  K :   P  M  N  K  A  S  G  M  E  S  R  D  D  D  L  D  L  A  G  Y  S  Q :   G  Q  K  S  G  Q  S  S  G  R  Q  L  T  S  R  P  E  A  M  S  M  D  F  V  V  R  P  Q  S  K  I  D  P  D  E  V  R  A  R  A  R  A  M  V  Q  D  Q  R  R  M  K  :  M  N  K  K  L  Q  Q  L  K  A  P  K  K  K  K  L  Q  A  T  K  L  S  V  E  G  R  G  M  V  K  Y  L  *  A  V  F  I  V  L  A  L  V  R  V  N  S  L  L  A  L  L  H  K  D  G  C  S  S  E  L  R  I  W  T  V  A  N  Q  S  A  L  *  M  W  D  H  F  *  N  *  F  E  G  F  *  Y  V  M  L  M  I  S  R  H  *  L  N  G  A  A  C  Y  L  L  I  L  F  L  P  *  Q  L  S  E  D  G  F  F  L  I  T  C  W  C  V  A  D  T  H  *  F  W  F  P  N  K  F  P  S  H  W  C  N  G  S  H  G  C  C  Y  G  *  C  A  T  W  N  T  I  L  L  P  F  G  M   : F  K  P  K  T  M  </first_frame>
            <second_frame>  Q  V  *  A  Y  L  V  T  I  N  K  A  I  T  K  *  S  *  K  F  D  R  V  D  C  C  L  H  K  *  S  K  Q  S  P  K  T  S  I  V  S  *  P  I  E  F  D  *  A  T  P  T  S  Q  I  I  Y  I  Y  N  L  L  F  Q  T  Y  P  S  N  Y  L  F  L  S  A  P  L  *  R  S  R  *  V  T  T  T  I   : R  T  *  M  R  M  E  R  H  W  W  I  L  M  R  M  S  D  Q  I  T  S  N  R  N  N  F  L  V  T  I  W  T  M  M  M  H  G  I  R  D  S  E  S  G  H  R  P  Q  Y  M  M  I  L  T  S  L  S  P  G  S  G  *  L  R  N  L  Q  L  E  K  T  H  R  I  L  G  *  E  M  R  R  M  L  M  V  V  L  L  L  M  T  *  L  A  I  C  M  M  S  L  T  A  V  V  L  H  L  P  L  L  V  V  E  R  G  R  G  L  A  W  S  L  V  K  R  R  G  R  R  R  R  G  E  R  K  E  R  R  N  L  S  *  G  K  M  G  V  T  L  E  E  A  G  *  R  T  R  R  G  I  G  R  *  R  R  C  G  T  P  L  L  V  V  T  L  R :   M  T  K  K  V  Q  R  M  P  M  M  I  T  S  L  M  I  V  V  *  I  Q  L  T  G  M  E  A  T  M  N  H  C  L  P  A  M  L  H  R :   L  K  K  G  K  R  M  T  K  S  S  S  S  S  R  E  A  R  R  K  R  K  L  K  R  V  Q  Q  K  L  H  C  *  *  R  M  L  W  L  S  W  K  L  L  P  R  R  M  P  N  *  I  D  I  P  N  L  L  *  I  N  *  K  N  S  L  F  S  *  M  S  C  L   : R  S  N  F  S  K  N  F  *  I  M  E  C  *  L  F  *  G  L  G  L  N  P  F  Q  M  E  A  C  P  T  *  T  F  V  L  R  S  *  R  S  L  L  I :   I  Q  L  I  L  S  S  M  I  E  E  R  C  *  K  R  V  V  L  E  R :   L  L  C  S  S  R  N  Q  M  R  R  L  H  L  T  G  N  L  P  R  I  W  L  T  N  G :   V  D  Q  Y  S  T  R  V  H  G  L  K  T  *  E  I  *  R  M  R  E  L  L  N  T  G  G  P  *  K   : N  P  *  I  K  H  Q  E  W  N  P  E  T  M  T  L  T  W  L  D  I  H   : K  G  K  N  L  V  S  H  L  V  G  N  L  H  Q  G  L  K  Q  C  Q  W  I  L  W  C  V  H  S  L  R  L  I  L  T  K  L  G  P  G  L  E  Q  W  F  K  T  S  A  E  *  R :   *  I  R  N  C  S  S  *  K  L  P  K  R  R  N  S  K  P  Q  N  *  V  W  R  V  V  A  W  *  S  T  S  R  L  C  L  L  C  L  P  L  L  G  *  I  A  C  W  L  C  Y  T  R  M  G  V  L  L  S  F  V  S  G  Q  W  L  I  K  V  P  C  E  C  G  I  I  F  E  I  S  L  R  A  S  S  M  L  C  *  *  S  V  V  I  D  *  M  V  P  H  V  I  Y  L  Y  Y  S  F  L  S  S  F  L  R  M  A  S  S  L  *  H  V  G  V  S  L  I  P  I  N  F  G  S  L  I  S  F  Q  V  I  G  V  M  E  V  M  A  V  A  M  G  D  A  Q  L  G  I  L  Y  Y  C  R  L  A  C  :  L  N  Q  R  L  * </second_frame>
            <third_frame>   K  C  R  H  I  W  S  Q  *  I  R  Q  S  Q  N  E  V  R  N  L  T  A  L  I  A  A  F  T  S  R  V  N  K  V  R  K  P  P  S  F  H  S  L  *  N  L  I  E  L  P  L  L  H  K  S  S  I  Y  I  I  Y  F  S  R  H  T  H  L  T  I  F  F  S  L  R  R  C  S  V  Q  D  E  L  Q  Q  R  S  :  V  H  R  *  G  W  R  G  I  G  G  F  *  *  G  C  P  I  R  *  R  A  T  G  T  I  S  W  *  Q  S  G  R  *  *  C  M  E  S  E  T  A  R  A  V  T  D  P  S  I  *  *  S  *  Q  V  *  A  Q  E  A  V  N  *  E  I  F  S  *  R  K  H  T  G  Y  W  A  R  R  *  G  G  C  L  W  W  C  C  C  *  *  H  D  W  Q  Y  A  *  *  V  *  R  R  W  S  F  I  F  L  C  W  W  W  K  E  E  E  V  W  H  G  V  *  *  R  E  E  E  G  E  E  G  E  R  E  R  R  E  E  I  *  V  E  E  K  W  G  L  L  W  R  K  Q  V  K  G  P  G  G  G  S  G  D  E  G  D  V  G  H  H  C  W  W  *  L  *   : G  *  P  R  R  S  K  E  C  R  *  *  *  L  H  *  *  *  W  C  R  S  S  *  Q  V  W  K  R  Q  *  T  T  V  S  Q  Q  C  S  T   : G  *  R  R  G  R  G  *  R  N  Q  A  A  L  Q  G  R  Q  E  E  K  E  N  *  K  E  C  S  R  N  C  I  A  S  R  E  C  Y  G  *  V  G  S  C  C  R  G  G  C  R  T  E  *  T  F  Q  T  C  Y  K  *  T  K  K  T  P  S  S  H  R  C  P  V  *  :  E  A  T  S  A  R  I  F  R  S  W  S  V  D  S  F  E  D  L  A  *  T  P  S  R  W  K  P  A  Q  H  K  H  S  C  C  D  P  K  D  P  Y  *   : L  S  N  *  S  *  A  V  *  *  K  R  D  V  E  K  E  W  S  W  K   : G  Y  Y  V  P  L  E  I  R  *  G  D  Y  I  *  Q  E  T  C  Q  G  F  G  *  Q  M   : E  S  T  N  I  Q  Q  E  Y  T  V  *  R  H  E  K  S  R  G  *  E  S  C  S  I  Q  A  A  L  E  K  :  T  H  E  *  S  I  R  N  G  I  Q  R  R  *  P  *  L  G  W  I  F  T  :  R  A  K  I  W  S  V  I  W  *  A  T  Y  I  K  A  *  S  N  V  N  G  F  C  G  A  S  T  V  *  D  *  S  *  R  S  *  G  Q  G  *  S  N  G  S  R  P  A  P  N  E   : D  E  *  E  T  A  A  V  K  S  S  Q  K  E  E  T  P  S  H  K  T  E  C  G  G  S  W  H  G  E  V  P  L  G  C  V  Y  C  A  C  P  C  *  G  K  *  P  V  G  S  A  T  Q  G  W  V  F  F  *  A  S  Y  L  D  S  G  *  S  K  C  L  V  N  V  G  S  F  L  K  L  V  *  G  L  L  V  C  Y  A  D  D  Q  S  S  L  I  K  W  C  R  M  L  S  T  Y  I  I  P  S  L  A  A  F  *  G  W  L  L  P  Y  N  M  L  V  C  R  *  Y  P  L  I  L  V  P  *  *  V  S  K  S  L  V  *  W  K  S  W  L  L  L  W  V  M  R  N  L  E  Y  Y  I  I  A  V  W  H  V :   *  T  K  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138343" stop="138288"/>
                    <exon start="137614" stop="137086"/>
                    <exon start="136827" stop="136708"/>
                    <exon start="136496" stop="136276"/>
                    <exon start="136177" stop="136048"/>
                    <exon start="135943" stop="135881"/>
                    <exon start="135796" stop="135719"/>
                    <exon start="135199" stop="135108"/>
                    <exon start="135015" stop="134950"/>
                    <exon start="134835" stop="134682"/>
                    <exon start="134107" stop="134009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFSLCAVVAFKMSYNNDPYIDEDGEALVDFDEDVRSDNEQQEQFLGDNLDDDDAWNQRQRERSPTPVYDDLNKSKPRKRLIKKSSARENTPDIGLGDEEDAYGGAAADDMTGNMHDEFDGGGPSSSSAGGGKRKRFGMEFSEEKRKEKKGREKGEKKFKLRKNGGYSGGSRLKDQEGDREMKEMWDTIAGGDSEDDQEGPKNADDDNFIDDSGVDPADRYGSDNEPLSPSNAPQAEEGEEDDEIKQLFKGGKKKKKTEKSAAEIALLVENVMAELEVVAEEDAELNRHSKPAINKLKKLPLLIDVLSKKQLQQEFLDHGVLTLLRTWLEPLPDGSLPNINIRAAILKILTDYPIDLEQYDRREMLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNLEDERAAQYRRPLKKPMNKASGMESRDDDLDLAGYSQGQKSGQSSGRQLTSRPEAMSMDFVVRPQSKIDPDEVRARARAMVQDQRRMKMNKKLQQLKAPKKKKLQATKLSVEGRGMVKYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="133233" PGL_stop="133748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133233" e_stop="133262"/>
            <exon e_start="133453" e_stop="133748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.467"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.467">
            <gDNA_exon_boundary e_start="133233" e_stop="133262" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="133263" i_stop="133452" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="133453" e_stop="133748" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133233" stop="133262"/>
              <exon start="133453" stop="133748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239017" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAATTCACATTCAATATATTGAATTATT : TACTTGAGAAATACTTTGTTTAGTCTAAAACAGGAAAAAGTACAATTTGCCTTCTGGAGAAGAATAAGATCTTTGTCTCAACTCACAAGCTAATAATACTAAACAAGCAAATGAAAGGGTAGAAAACCTAGCTAAAGAGCTTCAGGAAAACAGCATAATACATGCCAAACGGCAATAATATAGTATTCCAAGTTGCGCATCACCCATAGCAACAGCCATGACTTCCATTACACCAATGACTTGGAAACTTATTAGGGAACCAAAATTAATGGGTATCAGCGACACACCAACATGTT</gDNA_template>
            <first_frame> Y  N  S  H  S  I  Y  *  I  I  :  Y  L  R  N  T  L  F  S  L  K  Q  E  K  V  Q  F  A  F  W  R  R  I  R  S  L  S  Q  L  T  S  *  *  Y  *  T  S  K  *  K  G  R  K  P  S  *  R  A  S  G  K  Q  H  N  T  C  Q  T  A  I  I  *  Y  S  K  L  R  I  T  H  S  N  S  H  D  F  H  Y  T  N  D  L  E  T  Y  *  G  T  K  I  N  G  Y  Q  R  H  T  N  M   </first_frame>
            <second_frame>  I  I  H  I  Q  Y  I  E  L  F :   T  *  E  I  L  C  L  V  *  N  R  K  K  Y  N  L  P  S  G  E  E  *  D  L  C  L  N  S  Q  A  N  N  T  K  Q  A  N  E  R  V  E  N  L  A  K  E  L  Q  E  N  S  I  I  H  A  K  R  Q  *  Y  S  I  P  S  C  A  S  P  I  A  T  A  M  T  S  I  T  P  M  T  W  K  L  I  R  E  P  K  L  M  G  I  S  D  T  P  T  C  </second_frame>
            <third_frame>   *  F  T  F  N  I  L  N  Y   : L  L  E  K  Y  F  V  *  S  K  T  G  K  S  T  I  C  L  L  E  K  N  K  I  F  V  S  T  H  K  L  I  I  L  N  K  Q  M  K  G  *  K  T  *  L  K  S  F  R  K  T  A  *  Y  M  P  N  G  N  N  I  V  F  Q  V  A  H  H  P  *  Q  Q  P  *  L  P  L  H  Q  *  L  G  N  L  L  G  N  Q  N  *  W  V  S  A  T  H  Q  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0042L06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="144775" PGL_stop="147516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146284" e_stop="147516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="146284" e_stop="147516" e_length="1233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146284" stop="146694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146618" stop="147357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146618" stop="147190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147246" stop="147516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATGCTGTTATTGTTTCCTATTTTGACTGATTGACTTCCTATTTGTTTTTCTTTGCTAGGTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGTTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTAGATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATAGAAAGCTTGAGAAGAGGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTGCACAAGTTGCAGAAAATAAACAGAACCAAGAAACACCGTCTCCTGACTTAGAAGCTAGCCTGAAATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAACCCTAACAAGTGTGAGATCAAAATTAACAAATGCTCTAGTAATTATTTGACAACTCGCTTAGAACTCTTTGAGAAGCAGGTTGAAATAACGCAAAAATATCGTGGAAACTCAAATGTTCGATATGCATGGCTTGCCGCTTCTAAAGATTTGATATCTACAATTATGAAGTACGGCCTTGCACCTGGAGGATCTAAGTATAGGCCTAAA</gDNA_template>
            <first_frame> E  D  A  V  I  V  S  Y  F  D  *  L  T  S  Y  L  F  F  F  A  R  F  C  I  F  F  N  M  M  *  L  P  G  N  L  S  Q  M  V  F  T  I  S  I  *  P  F  F  G  T  C  K  *  I  V  I  S  V  D  K  M  E  P  K  G  V  G  F  L  D  S  G  R  R  T  V  V  G  E  K  S  K  V  V  T  Q  N  L  A  H  L  L  R  A  S  S  E  K  I  S  I  Q  S  N  C  D  R  K  L  E  K  R  K  R  I  V  H  C  E  S  N  S  Q  S  H  L  R  I  S  E  H  K  N  Y  L  N  F  K  R  S  R  L  P  L  R  V  L  F  Y  Q  N  G  E  W  T  D  F  P  Q  D  I  I  P  I  V  K  E  D  F  R  A  K  K  T  V  I  E  V  K  V  C  D  F  H  I  I  L  D  I  L  H  M  V  Q  I  D  V  I  N  G  L  Q  K  P  I  A  W  I  D  E  V  G  R  C  F  F  P  E  S  Y  L  I  S  S  E  M  L  G  N  F  E  T  L  S  K  R  T  E  E  F  M  T  T  E  P  D  R  I  T  D  M  K  L  Q  L  D  T  D  L  N  G  L  D  N  R  N  L  E  E  D  V  E  E  S  N  I  G  Y  K  R  N  K  V  C  P  L  K  D  S  Q  E  V  A  D  Y  K  K  S  D  A  K  I  A  Q  V  A  E  N  K  Q  N  Q  E  T  P  S  P  D  L  E  A  S  L  K  F  V  N  A  E  S  V  K  N  M  F  I  M  G  M  N  V  N  P  N  K  C  E  I  K  I  N  K  C  S  S  N  Y  L  T  T  R  L  E  L  F  E  K  Q  V  E  I  T  Q  K  Y  R  G  N  S  N  V  R  Y  A  W  L  A  A  S  K  D  L  I  S  T  I  M  K  Y  G  L  A  P  G  G  S  K  Y  R  P  K </first_frame>
            <second_frame>  K  M  L  L  L  F  P  I  L  T  D  *  L  P  I  C  F  S  L  L  G  F  A  F  S  S  I  *  C  S  F  P  E  I  Y  H  R  W  F  L  L  L  V  F  S  L  F  L  V  L  V  N  R  *  L  Y  L  *  I  K  W  N  Q  R  G  L  D  F  *  I  V  A  V  G  L  W  L  E  K  R  V  K  W  L  L  R  I  W  H  I  C  L  E  P  A  V  R  K  Y  Q  F  N  P  T  V  I  E  S  L  R  R  G  K  G  S  F  T  A  S  L  I  V  N  H  I  S  G  Y  L  N  T  R  T  T  *  T  L  R  E  A  D  C  R  Y  V  Y  C  F  I  R  T  V  N  G  P  T  S  L  K  I  L  F  L  *  L  K  K  I  F  G  R  K  R  L  L  L  R  *  K  F  V  T  F  I  *  F  L  I  F  Y  I  W  F  K  *  M  *  *  M  V  Y  R  N  L  L  P  G  *  M  K  *  V  G  V  S  S  L  S  L  I  L  S  V  V  K  C  L  G  I  L  K  P  C  Q  R  E  L  K  S  L  *  Q  L  S  Q  I  G  *  L  I  *  S  C  N  S  T  L  T  *  M  D  W  I  I  A  I  W  K  K  M  W  K  S  Q  I  L  V  T  R  G  I  K  Y  V  L  L  K  T  V  K  K  L  L  I  I  K  N  Q  M  Q  K  L  H  K  L  Q  K  I  N  R  T  K  K  H  R  L  L  T  *  K  L  A  *  N  L  *  M  Q  N  L  S  K  I  C  L  L  W  E  *  M  L  T  L  T  S  V  R  S  K  L  T  N  A  L  V  I  I  *  Q  L  A  *  N  S  L  R  S  R  L  K  *  R  K  N  I  V  E  T  Q  M  F  D  M  H  G  L  P  L  L  K  I  *  Y  L  Q  L  *  S  T  A  L  H  L  E  D  L  S  I  G  L   </second_frame>
            <third_frame>   R  C  C  Y  C  F  L  F  *  L  I  D  F  L  F  V  F  L  C  *  V  L  H  F  L  Q  Y  D  V  A  S  R  K  F  I  T  D  G  F  Y  Y  *  Y  L  A  F  F  W  Y  L  *  I  D  S  Y  I  C  R  *  N  G  T  K  G  G  W  I  F  R  *  W  P  *  D  C  G  W  R  K  E  *  S  G  Y  S  E  F  G  T  S  A  *  S  Q  Q  *  E  N  I  N  S  I  Q  L  *  *  K  A  *  E  E  E  K  D  R  S  L  R  V  *  *  S  I  T  S  Q  D  I  *  T  Q  E  L  P  E  L  *  E  K  Q  T  A  A  T  C  T  V  L  S  E  R  *  M  D  R  L  P  S  R  Y  Y  S  Y  S  *  R  R  F  S  G  E  K  D  C  Y  *  G  E  S  L  *  L  S  Y  N  S  *  Y  S  T  Y  G  S  N  R  C  N  K  W  F  T  E  T  Y  C  L  D  R  *  S  R  *  V  F  L  P  *  V  L  S  Y  Q  *  *  N  A  W  E  F  *  N  P  V  K  E  N  *  R  V  Y  D  N  *  A  R  *  D  N  *  Y  E  V  A  T  R  H  *  L  K  W  T  G  *  S  Q  F  G  R  R  C  G  R  V  K  Y  W  L  Q  E  E  *  S  M  S  S  *  R  Q  S  R  S  C  *  L  *  K  I  R  C  K  N  C  T  S  C  R  K  *  T  E  P  R  N  T  V  S  *  L  R  S  *  P  E  I  C  E  C  R  I  C  Q  K  Y  V  Y  Y  G  N  E  C  *  P  *  Q  V  *  D  Q  N  *  Q  M  L  *  *  L  F  D  N  S  L  R  T  L  *  E  A  G  *  N  N  A  K  I  S  W  K  L  K  C  S  I  C  M  A  C  R  F  *  R  F  D  I  Y  N  Y  E  V  R  P  C  T  W  R  I  *  V  *  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146443" stop="147516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVISVDKMEPKGVGFLDSGRRTVVGEKSKVVTQNLAHLLRASSEKISIQSNCDRKLEKRKRIVHCESNSQSHLRISEHKNYLNFKRSRLPLRVLFYQNGEWTDFPQDIIPIVKEDFRAKKTVIEVKVCDFHIILDILHMVQIDVINGLQKPIAWIDEVGRCFFPESYLISSEMLGNFETLSKRTEEFMTTEPDRITDMKLQLDTDLNGLDNRNLEEDVEESNIGYKRNKVCPLKDSQEVADYKKSDAKIAQVAENKQNQETPSPDLEASLKFVNAESVKNMFIMGMNVNPNKCEIKINKCSSNYLTTRLELFEKQVEITQKYRGNSNVRYAWLAASKDLISTIMKYGLAPGGSKYRPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="144775" e_stop="144856"/>
            <exon e_start="145823" e_stop="145946"/>
            <exon e_start="146346" e_stop="147516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.458" acc_prob="0.393" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="144775" e_stop="144856" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.458" acc_prob="0.393">
            <gDNA_intron_boundary i_start="144857" i_stop="145822" i_length="966"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145823" e_stop="145946" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.789" acc_prob="0.989">
            <gDNA_intron_boundary i_start="145947" i_stop="146345" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="146346" e_stop="147516" e_length="1171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144775" stop="144856"/>
              <exon start="145823" stop="145946"/>
              <exon start="146346" stop="146659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146618" stop="147357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146618" stop="147190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147246" stop="147516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTTTACTTTGCTTTGTTTTCTCCGCTCTGCGCTTTGATAATTTTTTTTTTTTAATCAATGAAGGATATCTATTATCGTG : AGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCG : GTTTTGCATTTTCTTCAATATGATGTAGCTTCCCGGAAATTTATCACAGATGGTTTTTACTATTAGTATTTAGCCTTTTTTTGGTACTTGTAAATAGATAGTTATATCTGTAGATAAAATGGAACCAAAGGGGGTTGGATTTTTAGATAGTGGCCGTAGGACTGTGGTTGGAGAAAAGAGTAAAGTGGTTACTCAGAATTTGGCACATCTGCTTAGAGCCAGCAGTGAGAAAATATCAATTCAATCCAACTGTGATAGAAAGCTTGAGAAGAGGAAAAGGATCGTTCACTGCGAGTCTAATAGTCAATCACATCTCAGGATATCTGAACACAAGAACTACCTGAACTTTAAGAGAAGCAGACTGCCGCTACGTGTACTGTTTTATCAGAACGGTGAATGGACCGACTTCCCTCAAGATATTATTCCTATAGTTAAAGAAGATTTTCGGGCGAAAAAGACTGTTATTGAGGTGAAAGTTTGTGACTTTCATATAATTCTTGATATTCTACATATGGTTCAAATAGATGTAATAAATGGTTTACAGAAACCTATTGCCTGGATAGATGAAGTAGGTAGGTGTTTCTTCCCTGAGTCTTATCTTATCAGTAGTGAAATGCTTGGGAATTTTGAAACCCTGTCAAAGAGAACTGAAGAGTTTATGACAACTGAGCCAGATAGGATAACTGATATGAAGTTGCAACTCGACACTGACTTAAATGGACTGGATAATCGCAATTTGGAAGAAGATGTGGAAGAGTCAAATATTGGTTACAAGAGGAATAAAGTATGTCCTCTTAAAGACAGTCAAGAAGTTGCTGATTATAAAAAATCAGATGCAAAAATTGCACAAGTTGCAGAAAATAAACAGAACCAAGAAACACCGTCTCCTGACTTAGAAGCTAGCCTGAAATTTGTGAATGCAGAATCTGTCAAAAATATGTTTATTATGGGAATGAATGTTAACCCTAACAAGTGTGAGATCAAAATTAACAAATGCTCTAGTAATTATTTGACAACTCGCTTAGAACTCTTTGAGAAGCAGGTTGAAATAACGCAAAAATATCGTGGAAACTCAAATGTTCGATATGCATGGCTTGCCGCTTCTAAAGATTTGATATCTACAATTATGAAGTACGGCCTTGCACCTGGAGGATCTAAGTATAGGCCTAAA</gDNA_template>
            <first_frame> L  L  Y  F  A  L  F  S  P  L  C  A  L  I  I  F  F  F  *  S  M  K  D  I  Y  Y  R   : E  E  A  N  *  I  I  S  V  S  L  A  L  C  K  R  *  E  F  V  D  L  T  P  T  L  W  R  K  L  T  C  T  A  I  A  V  Q  C  R  R  R :   F  C  I  F  F  N  M  M  *  L  P  G  N  L  S  Q  M  V  F  T  I  S  I  *  P  F  F  G  T  C  K  *  I  V  I  S  V  D  K  M  E  P  K  G  V  G  F  L  D  S  G  R  R  T  V  V  G  E  K  S  K  V  V  T  Q  N  L  A  H  L  L  R  A  S  S  E  K  I  S  I  Q  S  N  C  D  R  K  L  E  K  R  K  R  I  V  H  C  E  S  N  S  Q  S  H  L  R  I  S  E  H  K  N  Y  L  N  F  K  R  S  R  L  P  L  R  V  L  F  Y  Q  N  G  E  W  T  D  F  P  Q  D  I  I  P  I  V  K  E  D  F  R  A  K  K  T  V  I  E  V  K  V  C  D  F  H  I  I  L  D  I  L  H  M  V  Q  I  D  V  I  N  G  L  Q  K  P  I  A  W  I  D  E  V  G  R  C  F  F  P  E  S  Y  L  I  S  S  E  M  L  G  N  F  E  T  L  S  K  R  T  E  E  F  M  T  T  E  P  D  R  I  T  D  M  K  L  Q  L  D  T  D  L  N  G  L  D  N  R  N  L  E  E  D  V  E  E  S  N  I  G  Y  K  R  N  K  V  C  P  L  K  D  S  Q  E  V  A  D  Y  K  K  S  D  A  K  I  A  Q  V  A  E  N  K  Q  N  Q  E  T  P  S  P  D  L  E  A  S  L  K  F  V  N  A  E  S  V  K  N  M  F  I  M  G  M  N  V  N  P  N  K  C  E  I  K  I  N  K  C  S  S  N  Y  L  T  T  R  L  E  L  F  E  K  Q  V  E  I  T  Q  K  Y  R  G  N  S  N  V  R  Y  A  W  L  A  A  S  K  D  L  I  S  T  I  M  K  Y  G  L  A  P  G  G  S  K  Y  R  P  K </first_frame>
            <second_frame>  C  F  T  L  L  C  F  L  R  S  A  L  *  *  F  F  F  F  N  Q  *  R  I  S  I  I  V  :  R  K  P  I  R  L  Y  L  L  V  *  H  C  A  K  G  K  N  L  L  T  *  H  R  L  Y  G  E  N  *  L  V  Q  Q  S  P  C  S  A  E  G   : G  F  A  F  S  S  I  *  C  S  F  P  E  I  Y  H  R  W  F  L  L  L  V  F  S  L  F  L  V  L  V  N  R  *  L  Y  L  *  I  K  W  N  Q  R  G  L  D  F  *  I  V  A  V  G  L  W  L  E  K  R  V  K  W  L  L  R  I  W  H  I  C  L  E  P  A  V  R  K  Y  Q  F  N  P  T  V  I  E  S  L  R  R  G  K  G  S  F  T  A  S  L  I  V  N  H  I  S  G  Y  L  N  T  R  T  T  *  T  L  R  E  A  D  C  R  Y  V  Y  C  F  I  R  T  V  N  G  P  T  S  L  K  I  L  F  L  *  L  K  K  I  F  G  R  K  R  L  L  L  R  *  K  F  V  T  F  I  *  F  L  I  F  Y  I  W  F  K  *  M  *  *  M  V  Y  R  N  L  L  P  G  *  M  K  *  V  G  V  S  S  L  S  L  I  L  S  V  V  K  C  L  G  I  L  K  P  C  Q  R  E  L  K  S  L  *  Q  L  S  Q  I  G  *  L  I  *  S  C  N  S  T  L  T  *  M  D  W  I  I  A  I  W  K  K  M  W  K  S  Q  I  L  V  T  R  G  I  K  Y  V  L  L  K  T  V  K  K  L  L  I  I  K  N  Q  M  Q  K  L  H  K  L  Q  K  I  N  R  T  K  K  H  R  L  L  T  *  K  L  A  *  N  L  *  M  Q  N  L  S  K  I  C  L  L  W  E  *  M  L  T  L  T  S  V  R  S  K  L  T  N  A  L  V  I  I  *  Q  L  A  *  N  S  L  R  S  R  L  K  *  R  K  N  I  V  E  T  Q  M  F  D  M  H  G  L  P  L  L  K  I  *  Y  L  Q  L  *  S  T  A  L  H  L  E  D  L  S  I  G  L   </second_frame>
            <third_frame>   A  L  L  C  F  V  F  S  A  L  R  F  D  N  F  F  F  L  I  N  E  G  Y  L  L  S  * :   G  S  Q  L  D  Y  I  C  *  F  S  I  V  Q  K  V  R  I  C  *  L  D  T  D  F  M  E  K  I  D  L  Y  S  N  R  R  A  V  Q  K  A  :  V  L  H  F  L  Q  Y  D  V  A  S  R  K  F  I  T  D  G  F  Y  Y  *  Y  L  A  F  F  W  Y  L  *  I  D  S  Y  I  C  R  *  N  G  T  K  G  G  W  I  F  R  *  W  P  *  D  C  G  W  R  K  E  *  S  G  Y  S  E  F  G  T  S  A  *  S  Q  Q  *  E  N  I  N  S  I  Q  L  *  *  K  A  *  E  E  E  K  D  R  S  L  R  V  *  *  S  I  T  S  Q  D  I  *  T  Q  E  L  P  E  L  *  E  K  Q  T  A  A  T  C  T  V  L  S  E  R  *  M  D  R  L  P  S  R  Y  Y  S  Y  S  *  R  R  F  S  G  E  K  D  C  Y  *  G  E  S  L  *  L  S  Y  N  S  *  Y  S  T  Y  G  S  N  R  C  N  K  W  F  T  E  T  Y  C  L  D  R  *  S  R  *  V  F  L  P  *  V  L  S  Y  Q  *  *  N  A  W  E  F  *  N  P  V  K  E  N  *  R  V  Y  D  N  *  A  R  *  D  N  *  Y  E  V  A  T  R  H  *  L  K  W  T  G  *  S  Q  F  G  R  R  C  G  R  V  K  Y  W  L  Q  E  E  *  S  M  S  S  *  R  Q  S  R  S  C  *  L  *  K  I  R  C  K  N  C  T  S  C  R  K  *  T  E  P  R  N  T  V  S  *  L  R  S  *  P  E  I  C  E  C  R  I  C  Q  K  Y  V  Y  Y  G  N  E  C  *  P  *  Q  V  *  D  Q  N  *  Q  M  L  *  *  L  F  D  N  S  L  R  T  L  *  E  A  G  *  N  N  A  K  I  S  W  K  L  K  C  S  I  C  M  A  C  R  F  *  R  F  D  I  Y  N  Y  E  V  R  P  C  T  W  R  I  *  V  *  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146443" stop="147516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVISVDKMEPKGVGFLDSGRRTVVGEKSKVVTQNLAHLLRASSEKISIQSNCDRKLEKRKRIVHCESNSQSHLRISEHKNYLNFKRSRLPLRVLFYQNGEWTDFPQDIIPIVKEDFRAKKTVIEVKVCDFHIILDILHMVQIDVINGLQKPIAWIDEVGRCFFPESYLISSEMLGNFETLSKRTEEFMTTEPDRITDMKLQLDTDLNGLDNRNLEEDVEESNIGYKRNKVCPLKDSQEVADYKKSDAKIAQVAENKQNQETPSPDLEASLKFVNAESVKNMFIMGMNVNPNKCEIKINKCSSNYLTTRLELFEKQVEITQKYRGNSNVRYAWLAASKDLISTIMKYGLAPGGSKYRPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="145634" e_stop="146234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145634" e_stop="146234" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145634" stop="146234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145694" stop="145982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATCAATATATTTAGGAGAATACTGATGGAGGAGGACATTGACCTCTCTTCTTTTTTTAAAAAAAAAAATTGTTGTTTCTTTTCCAATTATGTATTGCATTGTAGTGCAGAAGTTTGAATTCAGACATTTATTTATGAATTATGCATTTGCTTTTGATTTGGAAACTGACAAAATTTACATTTCAGAGGAAGCCAATTAGATTATATCTGTTAGTTTAGCATTGTGCAAAAGGTAAGAATTTGTTGACTTGACACCGACTTTATGGAGAAAATTGACTTGTACAGCAATCGCCGTGCAGTGCAGAAGGCGGTCAGTATCTCAAACTAACCTATGTTCTGCGCACACTTTCTTTCTCCGCTTAGGATAAAATATATCTTTGTTTTCAAAAATGGTAAATGGTTTGTGACTTCAGTTGGATGCATTTCAATGTTTTATCTTCTCACCTTTCCTGTGGTCAAGTATACGTTTGTGTTAGAAACTTAGACCAATAAGCTATTCAAGTCACTTGGCATCGGTTGCTTTAGTAGTATGTATGGACTTCTATATTTCTACGGAATGCCTTTGTTCAATTTGTCAAGTATCTGCTTTCTAAAAAAA</gDNA_template>
            <first_frame> W  D  Q  Y  I  *  E  N  T  D  G  G  G  H  *  P  L  F  F  F  *  K  K  K  L  L  F  L  F  Q  L  C  I  A  L  *  C  R  S  L  N  S  D  I  Y  L  *  I  M  H  L  L  L  I  W  K  L  T  K  F  T  F  Q  R  K  P  I  R  L  Y  L  L  V  *  H  C  A  K  G  K  N  L  L  T  *  H  R  L  Y  G  E  N  *  L  V  Q  Q  S  P  C  S  A  E  G  G  Q  Y  L  K  L  T  Y  V  L  R  T  L  S  F  S  A  *  D  K  I  Y  L  C  F  Q  K  W  *  M  V  C  D  F  S  W  M  H  F  N  V  L  S  S  H  L  S  C  G  Q  V  Y  V  C  V  R  N  L  D  Q  *  A  I  Q  V  T  W  H  R  L  L  *  *  Y  V  W  T  S  I  F  L  R  N  A  F  V  Q  F  V  K  Y  L  L  S  K  K  </first_frame>
            <second_frame>  G  I  N  I  F  R  R  I  L  M  E  E  D  I  D  L  S  S  F  F  K  K  K  N  C  C  F  F  S  N  Y  V  L  H  C  S  A  E  V  *  I  Q  T  F  I  Y  E  L  C  I  C  F  *  F  G  N  *  Q  N  L  H  F  R  G  S  Q  L  D  Y  I  C  *  F  S  I  V  Q  K  V  R  I  C  *  L  D  T  D  F  M  E  K  I  D  L  Y  S  N  R  R  A  V  Q  K  A  V  S  I  S  N  *  P  M  F  C  A  H  F  L  S  P  L  R  I  K  Y  I  F  V  F  K  N  G  K  W  F  V  T  S  V  G  C  I  S  M  F  Y  L  L  T  F  P  V  V  K  Y  T  F  V  L  E  T  *  T  N  K  L  F  K  S  L  G  I  G  C  F  S  S  M  Y  G  L  L  Y  F  Y  G  M  P  L  F  N  L  S  S  I  C  F  L  K  K </second_frame>
            <third_frame>   G  S  I  Y  L  G  E  Y  *  W  R  R  T  L  T  S  L  L  F  L  K  K  K  I  V  V  S  F  P  I  M  Y  C  I  V  V  Q  K  F  E  F  R  H  L  F  M  N  Y  A  F  A  F  D  L  E  T  D  K  I  Y  I  S  E  E  A  N  *  I  I  S  V  S  L  A  L  C  K  R  *  E  F  V  D  L  T  P  T  L  W  R  K  L  T  C  T  A  I  A  V  Q  C  R  R  R  S  V  S  Q  T  N  L  C  S  A  H  T  F  F  L  R  L  G  *  N  I  S  L  F  S  K  M  V  N  G  L  *  L  Q  L  D  A  F  Q  C  F  I  F  S  P  F  L  W  S  S  I  R  L  C  *  K  L  R  P  I  S  Y  S  S  H  L  A  S  V  A  L  V  V  C  M  D  F  Y  I  S  T  E  C  L  C  S  I  C  Q  V  S  A  F  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0042L06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="147947" PGL_stop="150806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147947" e_stop="148177"/>
            <exon e_start="148983" e_stop="149691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.242" acc_prob="0.914" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="147947" e_stop="148177" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.242" acc_prob="0.914">
            <gDNA_intron_boundary i_start="148178" i_stop="148982" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="148983" e_stop="149691" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147947" stop="148177"/>
              <exon start="148983" stop="149691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147947" stop="148177"/>
              <exon start="148983" stop="149612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATGCTGATGAAAATGGCGTACATTACATGGTTTTTGCTCGTGTGATTTTGGGTAATATGGAACCTTTACACTGCGGATCTGAACAATGGCATCCCAGTGATGAAAAATATGATAGTGGAGTTGATGATCTCGAGAATCCTACTCATTATGTTATTTGGAATATGAATTTGAACACACATATATACCCAGTGTGTGTTGTGAGCTTCAGAATTCCTCCAGGAGCTGAAG : GACCCCGCGTTGGAAATGATAGTCGGATTGATGTCTCAGGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAGGTACCCACAAATACATTTCCGAAGGACTTGGGAAGTTTAGCTACAATATTGTACACTTAGGTTGTTGGGGGGATTTTATTATATGATCTTCATTAAACTATAAGATGGGGGAGTTGTGAGAGACAGTGTTGGACATGCAACAAAATCGATTTTTGAAATAAATTTAGGATTTTGAAAATTTTTAAAGAAATCAAGCACAATAGGCAAAGAAGAGGAACATGAAGTTCACTAATTCGAAAGGCCATGTCTTGAGTTTCTTTGGCAAAATGAGTGAACATCAAAAGAACTGTAAGTTACTTTATATGCTTTGACATGTTTGTTGCGCTTATATTTATTGTGTCGATTTATCTTCTTGATCAATGGTTGAGTTACTTCCTCAGATGCATGCTAGTTATCTAGGAAAACATTGATGCCATAGGCACTTGATAAAGTACTCTCTAGAAGATTGTTTGATATTATTTAACGGGTTTGCAACAAATAATCTGCATCCACTACTGAAAAGGCATAGTAATTGCTCTTGCACATGCTTTAACACCGGTATTCTTCATCTGCCGCACAAGTAACATTTCTGTTTTACATGTCCTACAAGAAACATGTCTGTTTTGCAGCCTTGCTGGAATTGTATCTGTTCATCA</gDNA_template>
            <first_frame> A  M  L  M  K  M  A  Y  I  T  W  F  L  L  V  *  F  W  V  I  W  N  L  Y  T  A  D  L  N  N  G  I  P  V  M  K  N  M  I  V  E  L  M  I  S  R  I  L  L  I  M  L  F  G  I  *  I  *  T  H  I  Y  T  Q  C  V  L  *  A  S  E  F  L  Q  E  L  K  :  D  P  A  L  E  M  I  V  G  L  M  S  Q  V  S  I  L  V  L  G  A  L  W  N  R  Y  P  Q  I  H  F  R  R  T  W  E  V  *  L  Q  Y  C  T  L  R  L  L  G  G  F  Y  Y  M  I  F  I  K  L  *  D  G  G  V  V  R  D  S  V  G  H  A  T  K  S  I  F  E  I  N  L  G  F  *  K  F  L  K  K  S  S  T  I  G  K  E  E  E  H  E  V  H  *  F  E  R  P  C  L  E  F  L  W  Q  N  E  *  T  S  K  E  L  *  V  T  L  Y  A  L  T  C  L  L  R  L  Y  L  L  C  R  F  I  F  L  I  N  G  *  V  T  S  S  D  A  C  *  L  S  R  K  T  L  M  P  *  A  L  D  K  V  L  S  R  R  L  F  D  I  I  *  R  V  C  N  K  *  S  A  S  T  T  E  K  A  *  *  L  L  L  H  M  L  *  H  R  Y  S  S  S  A  A  Q  V  T  F  L  F  Y  M  S  Y  K  K  H  V  C  F  A  A  L  L  E  L  Y  L  F  I  </first_frame>
            <second_frame>  R  C  *  *  K  W  R  T  L  H  G  F  C  S  C  D  F  G  *  Y  G  T  F  T  L  R  I  *  T  M  A  S  Q  *  *  K  I  *  *  W  S  *  *  S  R  E  S  Y  S  L  C  Y  L  E  Y  E  F  E  H  T  Y  I  P  S  V  C  C  E  L  Q  N  S  S  R  S  *  R :   T  P  R  W  K  *  *  S  D  *  C  L  R  C  Q  Y  L  S  S  G  P  C  G  T  G  T  H  K  Y  I  S  E  G  L  G  K  F  S  Y  N  I  V  H  L  G  C  W  G  D  F  I  I  *  S  S  L  N  Y  K  M  G  E  L  *  E  T  V  L  D  M  Q  Q  N  R  F  L  K  *  I  *  D  F  E  N  F  *  R  N  Q  A  Q  *  A  K  K  R  N  M  K  F  T  N  S  K  G  H  V  L  S  F  F  G  K  M  S  E  H  Q  K  N  C  K  L  L  Y  M  L  *  H  V  C  C  A  Y  I  Y  C  V  D  L  S  S  *  S  M  V  E  L  L  P  Q  M  H  A  S  Y  L  G  K  H  *  C  H  R  H  L  I  K  Y  S  L  E  D  C  L  I  L  F  N  G  F  A  T  N  N  L  H  P  L  L  K  R  H  S  N  C  S  C  T  C  F  N  T  G  I  L  H  L  P  H  K  *  H  F  C  F  T  C  P  T  R  N  M  S  V  L  Q  P  C  W  N  C  I  C  S  S </second_frame>
            <third_frame>   D  A  D  E  N  G  V  H  Y  M  V  F  A  R  V  I  L  G  N  M  E  P  L  H  C  G  S  E  Q  W  H  P  S  D  E  K  Y  D  S  G  V  D  D  L  E  N  P  T  H  Y  V  I  W  N  M  N  L  N  T  H  I  Y  P  V  C  V  V  S  F  R  I  P  P  G  A  E   : G  P  R  V  G  N  D  S  R  I  D  V  S  G  V  N  T  C  P  R  G  P  V  E  Q  V  P  T  N  T  F  P  K  D  L  G  S  L  A  T  I  L  Y  T  *  V  V  G  G  I  L  L  Y  D  L  H  *  T  I  R  W  G  S  C  E  R  Q  C  W  T  C  N  K  I  D  F  *  N  K  F  R  I  L  K  I  F  K  E  I  K  H  N  R  Q  R  R  G  T  *  S  S  L  I  R  K  A  M  S  *  V  S  L  A  K  *  V  N  I  K  R  T  V  S  Y  F  I  C  F  D  M  F  V  A  L  I  F  I  V  S  I  Y  L  L  D  Q  W  L  S  Y  F  L  R  C  M  L  V  I  *  E  N  I  D  A  I  G  T  *  *  S  T  L  *  K  I  V  *  Y  Y  L  T  G  L  Q  Q  I  I  C  I  H  Y  *  K  G  I  V  I  A  L  A  H  A  L  T  P  V  F  F  I  C  R  T  S  N  I  S  V  L  H  V  L  Q  E  T  C  L  F  C  S  L  A  G  I  V  S  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147949" stop="148177"/>
                    <exon start="148983" stop="149116"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DADENGVHYMVFARVILGNMEPLHCGSEQWHPSDEKYDSGVDDLENPTHYVIWNMNLNTHIYPVCVVSFRIPPGAEGPRVGNDSRIDVSGVNTCPRGPVEQVPTNTFPKDLGSLATILYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="149021" e_stop="149056"/>
            <exon e_start="149741" e_stop="149905"/>
            <exon e_start="150016" e_stop="150111"/>
            <exon e_start="150494" e_stop="150806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="149021" e_stop="149056" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.970">
            <gDNA_intron_boundary i_start="149057" i_stop="149740" i_length="684"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="149741" e_stop="149905" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.883" acc_prob="0.943">
            <gDNA_intron_boundary i_start="149906" i_stop="150015" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150016" e_stop="150111" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="150112" i_stop="150493" i_length="382"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="150494" e_stop="150806" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149021" stop="149056"/>
              <exon start="149741" stop="149905"/>
              <exon start="150016" stop="150111"/>
              <exon start="150494" stop="150806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149024" stop="149056"/>
              <exon start="149741" stop="149905"/>
              <exon start="150016" stop="150111"/>
              <exon start="150494" stop="150798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGTCAATACTTGTCCTCGGGGCCCTGTGGAACAG : GGAAGTCATCGTTTTCAAGTATCACTAGTTAAGTTGGCCCTGGAAGAGGCTGCGAGGATTCCAAAGTCCAGTGGGGTGCCATTCTCCTTGTTGATTGATGCAATCTCCAATGTAGTAAATGCCGAGAAAATGAACCATGTTACTAGAAGTTATGAGTTGCTTGGG : TTCAAGAAGATATGTAGGGATGAATTTGAGAAACGGTTGGTTGCAATCGTAGGCCTTACTCTGTTGAAGTCCACAACGAAAAGTTTGCTGTGCAAG : ATACAATCAAAACCCATTGAAATGGTTCAGCCAAAGCAAGAGCCACAAAGTGCTGACTTCAAAGGAAATACTGCCCTATTCCATTGGATAGAGCCACAGACCGAGTAACTGTGTTTATGTGGAACACCTTCTCTCTGTTGTAGTGAGATCGTTTAGATGGTTGGATTTCCTTTTCTACTGGAATGTGATAGTAGCATCTGTTCTTTTGTCCTAGAATATGGATTCGTGAAGTAGTTAGTTTCTTTTATTTGAACTGGTTAAAAACAGTTTAGTTTCAGCTACTCTTTGAAGTGAATGCTTATGAAGTTTATAT</gDNA_template>
            <first_frame> G  V  N  T  C  P  R  G  P  V  E  Q  :  G  S  H  R  F  Q  V  S  L  V  K  L  A  L  E  E  A  A  R  I  P  K  S  S  G  V  P  F  S  L  L  I  D  A  I  S  N  V  V  N  A  E  K  M  N  H  V  T  R  S  Y  E  L  L  G  :  F  K  K  I  C  R  D  E  F  E  K  R  L  V  A  I  V  G  L  T  L  L  K  S  T  T  K  S  L  L  C  K  :  I  Q  S  K  P  I  E  M  V  Q  P  K  Q  E  P  Q  S  A  D  F  K  G  N  T  A  L  F  H  W  I  E  P  Q  T  E  *  L  C  L  C  G  T  P  S  L  C  C  S  E  I  V  *  M  V  G  F  P  F  L  L  E  C  D  S  S  I  C  S  F  V  L  E  Y  G  F  V  K  *  L  V  S  F  I  *  T  G  *  K  Q  F  S  F  S  Y  S  L  K  *  M  L  M  K  F  I  </first_frame>
            <second_frame>  V  S  I  L  V  L  G  A  L  W  N  R :   E  V  I  V  F  K  Y  H  *  L  S  W  P  W  K  R  L  R  G  F  Q  S  P  V  G  C  H  S  P  C  *  L  M  Q  S  P  M  *  *  M  P  R  K  *  T  M  L  L  E  V  M  S  C  L  G :   S  R  R  Y  V  G  M  N  L  R  N  G  W  L  Q  S  *  A  L  L  C  *  S  P  Q  R  K  V  C  C  A  R :   Y  N  Q  N  P  L  K  W  F  S  Q  S  K  S  H  K  V  L  T  S  K  E  I  L  P  Y  S  I  G  *  S  H  R  P  S  N  C  V  Y  V  E  H  L  L  S  V  V  V  R  S  F  R  W  L  D  F  L  F  Y  W  N  V  I  V  A  S  V  L  L  S  *  N  M  D  S  *  S  S  *  F  L  L  F  E  L  V  K  N  S  L  V  S  A  T  L  *  S  E  C  L  *  S  L  Y </second_frame>
            <third_frame>   C  Q  Y  L  S  S  G  P  C  G  T   : G  K  S  S  F  S  S  I  T  S  *  V  G  P  G  R  G  C  E  D  S  K  V  Q  W  G  A  I  L  L  V  D  *  C  N  L  Q  C  S  K  C  R  E  N  E  P  C  Y  *  K  L  *  V  A  W   : V  Q  E  D  M  *  G  *  I  *  E  T  V  G  C  N  R  R  P  Y  S  V  E  V  H  N  E  K  F  A  V  Q   : D  T  I  K  T  H  *  N  G  S  A  K  A  R  A  T  K  C  *  L  Q  R  K  Y  C  P  I  P  L  D  R  A  T  D  R  V  T  V  F  M  W  N  T  F  S  L  L  *  *  D  R  L  D  G  W  I  S  F  S  T  G  M  *  *  *  H  L  F  F  C  P  R  I  W  I  R  E  V  V  S  F  F  Y  L  N  W  L  K  T  V  *  F  Q  L  L  F  E  V  N  A  Y  E  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0042L06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149021" stop="149056"/>
                    <exon start="149741" stop="149905"/>
                    <exon start="150016" stop="150111"/>
                    <exon start="150494" stop="150601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVNTCPRGPVEQGSHRFQVSLVKLALEEAARIPKSSGVPFSLLIDAISNVVNAEKMNHVTRSYELLGFKKICRDEFEKRLVAIVGLTLLKSTTKSLLCKIQSKPIEMVQPKQEPQSADFKGNTALFHWIEPQTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 166 chains have been computed
$ 
$ memory statistics:
$ 1464672 bytes spliced alignments in total
$ 92 spliced alignments have been stored
$ 15920 bytes was the average size of a spliced alignment
$ 25784 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1611 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 192 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:40:06
-->
